## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4160-K562_0.2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4160-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4160-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:47:08 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8951802	9525364	0	440021	106348	0.049154	114276208

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011558
2.0	1.9469
3.0	2.811769
4.0	3.611474
5.0	4.350925
6.0	5.034662
7.0	5.666883
8.0	6.251469
9.0	6.792009
10.0	7.291822
11.0	7.753976
12.0	8.18131
13.0	8.576446
14.0	8.94181
15.0	9.279646
16.0	9.592027
17.0	9.880873
18.0	10.147955
19.0	10.394913
20.0	10.623265
21.0	10.834411
22.0	11.029649
23.0	11.210176
24.0	11.377101
25.0	11.53145
26.0	11.674169
27.0	11.806135
28.0	11.928157
29.0	12.040986
30.0	12.145314
31.0	12.241782
32.0	12.330981
33.0	12.413459
34.0	12.489723
35.0	12.56024
36.0	12.625445
37.0	12.685737
38.0	12.741486
39.0	12.793034
40.0	12.840699
41.0	12.884772
42.0	12.925525
43.0	12.963207
44.0	12.99805
45.0	13.030268
46.0	13.060058
47.0	13.087604
48.0	13.113074
49.0	13.136625
50.0	13.158402
51.0	13.178538
52.0	13.197157
53.0	13.214373
54.0	13.230292
55.0	13.245011
56.0	13.258622
57.0	13.271207
58.0	13.282843
59.0	13.293603
60.0	13.303552
61.0	13.312752
62.0	13.321258
63.0	13.329124
64.0	13.336397
65.0	13.343122
66.0	13.34934
67.0	13.35509
68.0	13.360406
69.0	13.365322
70.0	13.369868
71.0	13.374071
72.0	13.377957
73.0	13.381551
74.0	13.384874
75.0	13.387946
76.0	13.390787
77.0	13.393414
78.0	13.395843
79.0	13.398089
80.0	13.400166
81.0	13.402086
82.0	13.403861
83.0	13.405503
84.0	13.407021
85.0	13.408425
86.0	13.409723
87.0	13.410923
88.0	13.412033
89.0	13.413059
90.0	13.414008
91.0	13.414885
92.0	13.415696
93.0	13.416446
94.0	13.41714
95.0	13.417781
96.0	13.418374
97.0	13.418923
98.0	13.41943
99.0	13.419898
100.0	13.420332