python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170KO_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586A_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170KO_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586A_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_vector_neg_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py vector_neg_2.2x36mers.hg38+mm10.unique.nochrM.dedup.hg38.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170KO_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586A_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170KO_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586A_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py stim_vector_neg_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py vector_neg_2.2x36mers.hg38+mm10.unique.nochrM.dedup.mm10.TSS_profile 100 2000 >> ATACTSSscore.txt