## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_vector_neg_1.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:31 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2024901	0	0	299114	32542	0.147718	6765354

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014012
2.0	1.765734
3.0	2.323011
4.0	2.736138
5.0	3.042404
6.0	3.269449
7.0	3.437765
8.0	3.562543
9.0	3.655046
10.0	3.723621
11.0	3.774458
12.0	3.812145
13.0	3.840084
14.0	3.860796
15.0	3.87615
16.0	3.887533
17.0	3.895971
18.0	3.902227
19.0	3.906865
20.0	3.910303
21.0	3.912851
22.0	3.914741
23.0	3.916141
24.0	3.91718
25.0	3.91795
26.0	3.91852
27.0	3.918943
28.0	3.919257
29.0	3.91949
30.0	3.919662
31.0	3.91979
32.0	3.919884
33.0	3.919955
34.0	3.920007
35.0	3.920045
36.0	3.920074
37.0	3.920095
38.0	3.920111
39.0	3.920122
40.0	3.920131
41.0	3.920137
42.0	3.920142
43.0	3.920146
44.0	3.920148
45.0	3.92015
46.0	3.920152
47.0	3.920153
48.0	3.920154
49.0	3.920154
50.0	3.920155
51.0	3.920155
52.0	3.920155
53.0	3.920155
54.0	3.920155
55.0	3.920156
56.0	3.920156
57.0	3.920156
58.0	3.920156
59.0	3.920156
60.0	3.920156
61.0	3.920156
62.0	3.920156
63.0	3.920156
64.0	3.920156
65.0	3.920156
66.0	3.920156
67.0	3.920156
68.0	3.920156
69.0	3.920156
70.0	3.920156
71.0	3.920156
72.0	3.920156
73.0	3.920156
74.0	3.920156
75.0	3.920156
76.0	3.920156
77.0	3.920156
78.0	3.920156
79.0	3.920156
80.0	3.920156
81.0	3.920156
82.0	3.920156
83.0	3.920156
84.0	3.920156
85.0	3.920156
86.0	3.920156
87.0	3.920156
88.0	3.920156
89.0	3.920156
90.0	3.920156
91.0	3.920156
92.0	3.920156
93.0	3.920156
94.0	3.920156
95.0	3.920156
96.0	3.920156
97.0	3.920156
98.0	3.920156
99.0	3.920156
100.0	3.920156