## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_BAF170_S586A_1.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:31 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1290062	0	0	144744	17936	0.112199	5949436

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012626
2.0	1.827852
3.0	2.484158
4.0	3.012525
5.0	3.437891
6.0	3.780337
7.0	4.056027
8.0	4.277974
9.0	4.456655
10.0	4.600504
11.0	4.716311
12.0	4.809543
13.0	4.8846
14.0	4.945026
15.0	4.993672
16.0	5.032835
17.0	5.064364
18.0	5.089746
19.0	5.110181
20.0	5.126632
21.0	5.139876
22.0	5.150538
23.0	5.159122
24.0	5.166032
25.0	5.171596
26.0	5.176075
27.0	5.17968
28.0	5.182583
29.0	5.18492
30.0	5.186802
31.0	5.188316
32.0	5.189536
33.0	5.190517
34.0	5.191308
35.0	5.191944
36.0	5.192456
37.0	5.192868
38.0	5.1932
39.0	5.193468
40.0	5.193683
41.0	5.193856
42.0	5.193995
43.0	5.194108
44.0	5.194198
45.0	5.194271
46.0	5.194329
47.0	5.194377
48.0	5.194414
49.0	5.194445
50.0	5.19447
51.0	5.194489
52.0	5.194505
53.0	5.194518
54.0	5.194529
55.0	5.194537
56.0	5.194544
57.0	5.194549
58.0	5.194553
59.0	5.194557
60.0	5.19456
61.0	5.194562
62.0	5.194564
63.0	5.194565
64.0	5.194566
65.0	5.194567
66.0	5.194568
67.0	5.194569
68.0	5.194569
69.0	5.19457
70.0	5.19457
71.0	5.19457
72.0	5.19457
73.0	5.194571
74.0	5.194571
75.0	5.194571
76.0	5.194571
77.0	5.194571
78.0	5.194571
79.0	5.194571
80.0	5.194571
81.0	5.194571
82.0	5.194571
83.0	5.194571
84.0	5.194571
85.0	5.194571
86.0	5.194571
87.0	5.194571
88.0	5.194571
89.0	5.194571
90.0	5.194571
91.0	5.194571
92.0	5.194571
93.0	5.194571
94.0	5.194571
95.0	5.194571
96.0	5.194571
97.0	5.194571
98.0	5.194571
99.0	5.194571
100.0	5.194571