## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_BAF170_2.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_BAF170_2.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:32 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	978240	0	0	95156	12565	0.097273	5318756

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011852
2.0	1.853713
3.0	2.554142
4.0	3.136898
5.0	3.621752
6.0	4.02515
7.0	4.360777
8.0	4.640019
9.0	4.872349
10.0	5.065647
11.0	5.226471
12.0	5.360276
13.0	5.471603
14.0	5.564226
15.0	5.641289
16.0	5.705405
17.0	5.75875
18.0	5.803133
19.0	5.840059
20.0	5.870782
21.0	5.896343
22.0	5.91761
23.0	5.935305
24.0	5.950026
25.0	5.962275
26.0	5.972465
27.0	5.980944
28.0	5.987998
29.0	5.993867
30.0	5.99875
31.0	6.002813
32.0	6.006193
33.0	6.009006
34.0	6.011345
35.0	6.013292
36.0	6.014912
37.0	6.016259
38.0	6.017381
39.0	6.018313
40.0	6.01909
41.0	6.019735
42.0	6.020273
43.0	6.02072
44.0	6.021091
45.0	6.021401
46.0	6.021658
47.0	6.021873
48.0	6.022051
49.0	6.022199
50.0	6.022322
51.0	6.022425
52.0	6.02251
53.0	6.022581
54.0	6.022641
55.0	6.02269
56.0	6.022731
57.0	6.022765
58.0	6.022793
59.0	6.022817
60.0	6.022836
61.0	6.022852
62.0	6.022866
63.0	6.022877
64.0	6.022887
65.0	6.022895
66.0	6.022901
67.0	6.022906
68.0	6.022911
69.0	6.022915
70.0	6.022918
71.0	6.02292
72.0	6.022923
73.0	6.022924
74.0	6.022926
75.0	6.022927
76.0	6.022928
77.0	6.022929
78.0	6.02293
79.0	6.02293
80.0	6.022931
81.0	6.022931
82.0	6.022932
83.0	6.022932
84.0	6.022932
85.0	6.022932
86.0	6.022932
87.0	6.022933
88.0	6.022933
89.0	6.022933
90.0	6.022933
91.0	6.022933
92.0	6.022933
93.0	6.022933
94.0	6.022933
95.0	6.022933
96.0	6.022933
97.0	6.022933
98.0	6.022933
99.0	6.022933
100.0	6.022933