## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Squirrel_monkey_ID_2655_Sample2418.2x36mers-trimmed.a.bam] OUTPUT=Squirrel_monkey_ID_2655_Sample2418.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Squirrel_monkey_ID_2655_Sample2418.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:41 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12394240	0	0	1783455	217663	0.143894	43193957

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015435
2.0	1.777574
3.0	2.3496
4.0	2.778937
5.0	3.101177
6.0	3.343036
7.0	3.524564
8.0	3.66081
9.0	3.763071
10.0	3.839822
11.0	3.897429
12.0	3.940666
13.0	3.973117
14.0	3.997474
15.0	4.015755
16.0	4.029475
17.0	4.039774
18.0	4.047503
19.0	4.053304
20.0	4.057659
21.0	4.060927
22.0	4.063379
23.0	4.06522
24.0	4.066602
25.0	4.067639
26.0	4.068418
27.0	4.069002
28.0	4.06944
29.0	4.06977
30.0	4.070017
31.0	4.070202
32.0	4.070341
33.0	4.070446
34.0	4.070524
35.0	4.070583
36.0	4.070627
37.0	4.07066
38.0	4.070685
39.0	4.070704
40.0	4.070718
41.0	4.070728
42.0	4.070736
43.0	4.070742
44.0	4.070746
45.0	4.07075
46.0	4.070752
47.0	4.070754
48.0	4.070756
49.0	4.070757
50.0	4.070757
51.0	4.070758
52.0	4.070758
53.0	4.070759
54.0	4.070759
55.0	4.070759
56.0	4.070759
57.0	4.070759
58.0	4.07076
59.0	4.07076
60.0	4.07076
61.0	4.07076
62.0	4.07076
63.0	4.07076
64.0	4.07076
65.0	4.07076
66.0	4.07076
67.0	4.07076
68.0	4.07076
69.0	4.07076
70.0	4.07076
71.0	4.07076
72.0	4.07076
73.0	4.07076
74.0	4.07076
75.0	4.07076
76.0	4.07076
77.0	4.07076
78.0	4.07076
79.0	4.07076
80.0	4.07076
81.0	4.07076
82.0	4.07076
83.0	4.07076
84.0	4.07076
85.0	4.07076
86.0	4.07076
87.0	4.07076
88.0	4.07076
89.0	4.07076
90.0	4.07076
91.0	4.07076
92.0	4.07076
93.0	4.07076
94.0	4.07076
95.0	4.07076
96.0	4.07076
97.0	4.07076
98.0	4.07076
99.0	4.07076
100.0	4.07076