Command line: /oak/stanford/groups/akundaje/marinovg/programs/SPAdes-3.15.0-Linux/bin/spades.py	--pe1-1	/oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/Squirrel_monkey_ID_2655_Sample2418.read1.paired.fastq.gz	--pe1-2	/oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/Squirrel_monkey_ID_2655_Sample2418.read2.paired.fastq.gz	-t	20	-o	/oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/SPAdes-3.15-Squirrel_monkey_ID_2655_Sample2418	

System information:
  SPAdes version: 3.15.0
  Python version: 2.7.13
  OS: Linux-3.10.0-957.27.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core

Output dir: /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/SPAdes-3.15-Squirrel_monkey_ID_2655_Sample2418
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Standard mode
  For multi-cell/isolate data we recommend to use '--isolate' option; for single-cell MDA data use '--sc'; for metagenomic data use '--meta'; for RNA-Seq use '--rna'.
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/Squirrel_monkey_ID_2655_Sample2418.read1.paired.fastq.gz']
      right reads: ['/oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/Squirrel_monkey_ID_2655_Sample2418.read2.paired.fastq.gz']
      interlaced reads: not specified
      single reads: not specified
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Assembly parameters:
  k: automatic selection based on read length
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-01-21-ATAC-seq-assembly/SPAdes-3.15-Squirrel_monkey_ID_2655_Sample2418/tmp
  Threads: 20
  Memory limit (in Gb): 250