## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Myotis_yumanensis_Yuma_myotisID_MYUMP4_Sample2431.2x36mers-trimmed.a.bam] OUTPUT=Myotis_yumanensis_Yuma_myotisID_MYUMP4_Sample2431.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Myotis_yumanensis_Yuma_myotisID_MYUMP4_Sample2431.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:41 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	26992818	0	0	8968349	4363596	0.332249	47772503

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.144072
2.0	1.794298
3.0	2.16385
4.0	2.373883
5.0	2.493254
6.0	2.561098
7.0	2.599656
8.0	2.621571
9.0	2.634026
10.0	2.641105
11.0	2.645128
12.0	2.647414
13.0	2.648714
14.0	2.649453
15.0	2.649872
16.0	2.650111
17.0	2.650246
18.0	2.650324
19.0	2.650367
20.0	2.650392
21.0	2.650406
22.0	2.650414
23.0	2.650419
24.0	2.650422
25.0	2.650423
26.0	2.650424
27.0	2.650424
28.0	2.650425
29.0	2.650425
30.0	2.650425
31.0	2.650425
32.0	2.650425
33.0	2.650425
34.0	2.650425
35.0	2.650425
36.0	2.650425
37.0	2.650425
38.0	2.650425
39.0	2.650425
40.0	2.650425
41.0	2.650425
42.0	2.650425
43.0	2.650425
44.0	2.650425
45.0	2.650425
46.0	2.650425
47.0	2.650425
48.0	2.650425
49.0	2.650425
50.0	2.650425
51.0	2.650425
52.0	2.650425
53.0	2.650425
54.0	2.650425
55.0	2.650425
56.0	2.650425
57.0	2.650425
58.0	2.650425
59.0	2.650425
60.0	2.650425
61.0	2.650425
62.0	2.650425
63.0	2.650425
64.0	2.650425
65.0	2.650425
66.0	2.650425
67.0	2.650425
68.0	2.650425
69.0	2.650425
70.0	2.650425
71.0	2.650425
72.0	2.650425
73.0	2.650425
74.0	2.650425
75.0	2.650425
76.0	2.650425
77.0	2.650425
78.0	2.650425
79.0	2.650425
80.0	2.650425
81.0	2.650425
82.0	2.650425
83.0	2.650425
84.0	2.650425
85.0	2.650425
86.0	2.650425
87.0	2.650425
88.0	2.650425
89.0	2.650425
90.0	2.650425
91.0	2.650425
92.0	2.650425
93.0	2.650425
94.0	2.650425
95.0	2.650425
96.0	2.650425
97.0	2.650425
98.0	2.650425
99.0	2.650425
100.0	2.650425