## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers-trimmed.a.bam] OUTPUT=Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Cactus_mouse_Sample2404_Peromyscus_eremicus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	28943415	0	0	13277078	6859580	0.458725	30210599

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.188577
2.0	1.644561
3.0	1.819494
4.0	1.886605
5.0	1.912352
6.0	1.922229
7.0	1.926018
8.0	1.927472
9.0	1.92803
10.0	1.928244
11.0	1.928326
12.0	1.928357
13.0	1.928369
14.0	1.928374
15.0	1.928376
16.0	1.928376
17.0	1.928377
18.0	1.928377
19.0	1.928377
20.0	1.928377
21.0	1.928377
22.0	1.928377
23.0	1.928377
24.0	1.928377
25.0	1.928377
26.0	1.928377
27.0	1.928377
28.0	1.928377
29.0	1.928377
30.0	1.928377
31.0	1.928377
32.0	1.928377
33.0	1.928377
34.0	1.928377
35.0	1.928377
36.0	1.928377
37.0	1.928377
38.0	1.928377
39.0	1.928377
40.0	1.928377
41.0	1.928377
42.0	1.928377
43.0	1.928377
44.0	1.928377
45.0	1.928377
46.0	1.928377
47.0	1.928377
48.0	1.928377
49.0	1.928377
50.0	1.928377
51.0	1.928377
52.0	1.928377
53.0	1.928377
54.0	1.928377
55.0	1.928377
56.0	1.928377
57.0	1.928377
58.0	1.928377
59.0	1.928377
60.0	1.928377
61.0	1.928377
62.0	1.928377
63.0	1.928377
64.0	1.928377
65.0	1.928377
66.0	1.928377
67.0	1.928377
68.0	1.928377
69.0	1.928377
70.0	1.928377
71.0	1.928377
72.0	1.928377
73.0	1.928377
74.0	1.928377
75.0	1.928377
76.0	1.928377
77.0	1.928377
78.0	1.928377
79.0	1.928377
80.0	1.928377
81.0	1.928377
82.0	1.928377
83.0	1.928377
84.0	1.928377
85.0	1.928377
86.0	1.928377
87.0	1.928377
88.0	1.928377
89.0	1.928377
90.0	1.928377
91.0	1.928377
92.0	1.928377
93.0	1.928377
94.0	1.928377
95.0	1.928377
96.0	1.928377
97.0	1.928377
98.0	1.928377
99.0	1.928377
100.0	1.928377