## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Cactus_mouse_ID_2953_Sample2412_Peromyscus_collatus.2x36mers-trimmed.a.bam] OUTPUT=Cactus_mouse_ID_2953_Sample2412_Peromyscus_collatus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Cactus_mouse_ID_2953_Sample2412_Peromyscus_collatus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	29263731	0	0	16457117	2619075	0.562372	15666511

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.034379
2.0	1.194134
3.0	1.218807
4.0	1.222618
5.0	1.223207
6.0	1.223297
7.0	1.223311
8.0	1.223314
9.0	1.223314
10.0	1.223314
11.0	1.223314
12.0	1.223314
13.0	1.223314
14.0	1.223314
15.0	1.223314
16.0	1.223314
17.0	1.223314
18.0	1.223314
19.0	1.223314
20.0	1.223314
21.0	1.223314
22.0	1.223314
23.0	1.223314
24.0	1.223314
25.0	1.223314
26.0	1.223314
27.0	1.223314
28.0	1.223314
29.0	1.223314
30.0	1.223314
31.0	1.223314
32.0	1.223314
33.0	1.223314
34.0	1.223314
35.0	1.223314
36.0	1.223314
37.0	1.223314
38.0	1.223314
39.0	1.223314
40.0	1.223314
41.0	1.223314
42.0	1.223314
43.0	1.223314
44.0	1.223314
45.0	1.223314
46.0	1.223314
47.0	1.223314
48.0	1.223314
49.0	1.223314
50.0	1.223314
51.0	1.223314
52.0	1.223314
53.0	1.223314
54.0	1.223314
55.0	1.223314
56.0	1.223314
57.0	1.223314
58.0	1.223314
59.0	1.223314
60.0	1.223314
61.0	1.223314
62.0	1.223314
63.0	1.223314
64.0	1.223314
65.0	1.223314
66.0	1.223314
67.0	1.223314
68.0	1.223314
69.0	1.223314
70.0	1.223314
71.0	1.223314
72.0	1.223314
73.0	1.223314
74.0	1.223314
75.0	1.223314
76.0	1.223314
77.0	1.223314
78.0	1.223314
79.0	1.223314
80.0	1.223314
81.0	1.223314
82.0	1.223314
83.0	1.223314
84.0	1.223314
85.0	1.223314
86.0	1.223314
87.0	1.223314
88.0	1.223314
89.0	1.223314
90.0	1.223314
91.0	1.223314
92.0	1.223314
93.0	1.223314
94.0	1.223314
95.0	1.223314
96.0	1.223314
97.0	1.223314
98.0	1.223314
99.0	1.223314
100.0	1.223314