## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.unique.bam] OUTPUT=Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.unique.dedup.bam METRICS_FILE=Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:25 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4146614	0	0	688256	98710	0.16598	12511858

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.020572
2.0	1.753248
3.0	2.279241
4.0	2.656856
5.0	2.927948
6.0	3.122568
7.0	3.262286
8.0	3.362591
9.0	3.434601
10.0	3.486297
11.0	3.52341
12.0	3.550054
13.0	3.569182
14.0	3.582914
15.0	3.592772
16.0	3.599849
17.0	3.60493
18.0	3.608578
19.0	3.611197
20.0	3.613077
21.0	3.614426
22.0	3.615395
23.0	3.616091
24.0	3.61659
25.0	3.616948
26.0	3.617206
27.0	3.617391
28.0	3.617523
29.0	3.617619
30.0	3.617687
31.0	3.617736
32.0	3.617771
33.0	3.617796
34.0	3.617815
35.0	3.617828
36.0	3.617837
37.0	3.617844
38.0	3.617849
39.0	3.617852
40.0	3.617855
41.0	3.617856
42.0	3.617858
43.0	3.617859
44.0	3.617859
45.0	3.61786
46.0	3.61786
47.0	3.61786
48.0	3.61786
49.0	3.617861
50.0	3.617861
51.0	3.617861
52.0	3.617861
53.0	3.617861
54.0	3.617861
55.0	3.617861
56.0	3.617861
57.0	3.617861
58.0	3.617861
59.0	3.617861
60.0	3.617861
61.0	3.617861
62.0	3.617861
63.0	3.617861
64.0	3.617861
65.0	3.617861
66.0	3.617861
67.0	3.617861
68.0	3.617861
69.0	3.617861
70.0	3.617861
71.0	3.617861
72.0	3.617861
73.0	3.617861
74.0	3.617861
75.0	3.617861
76.0	3.617861
77.0	3.617861
78.0	3.617861
79.0	3.617861
80.0	3.617861
81.0	3.617861
82.0	3.617861
83.0	3.617861
84.0	3.617861
85.0	3.617861
86.0	3.617861
87.0	3.617861
88.0	3.617861
89.0	3.617861
90.0	3.617861
91.0	3.617861
92.0	3.617861
93.0	3.617861
94.0	3.617861
95.0	3.617861
96.0	3.617861
97.0	3.617861
98.0	3.617861
99.0	3.617861
100.0	3.617861