## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.a.bam] OUTPUT=Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Brazilian_tapir_Sample2410_Tapirus_terrestris.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4149253	0	0	689964	99186	0.166286	12496902

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.020653
2.0	1.752943
3.0	2.278339
4.0	2.655296
5.0	2.925752
6.0	3.119796
7.0	3.259017
8.0	3.358904
9.0	3.43057
10.0	3.481989
11.0	3.51888
12.0	3.545348
13.0	3.564339
14.0	3.577964
15.0	3.587739
16.0	3.594753
17.0	3.599785
18.0	3.603395
19.0	3.605986
20.0	3.607844
21.0	3.609178
22.0	3.610134
23.0	3.610821
24.0	3.611313
25.0	3.611666
26.0	3.61192
27.0	3.612102
28.0	3.612232
29.0	3.612326
30.0	3.612393
31.0	3.612441
32.0	3.612476
33.0	3.612501
34.0	3.612519
35.0	3.612531
36.0	3.61254
37.0	3.612547
38.0	3.612552
39.0	3.612555
40.0	3.612558
41.0	3.612559
42.0	3.612561
43.0	3.612561
44.0	3.612562
45.0	3.612563
46.0	3.612563
47.0	3.612563
48.0	3.612563
49.0	3.612563
50.0	3.612564
51.0	3.612564
52.0	3.612564
53.0	3.612564
54.0	3.612564
55.0	3.612564
56.0	3.612564
57.0	3.612564
58.0	3.612564
59.0	3.612564
60.0	3.612564
61.0	3.612564
62.0	3.612564
63.0	3.612564
64.0	3.612564
65.0	3.612564
66.0	3.612564
67.0	3.612564
68.0	3.612564
69.0	3.612564
70.0	3.612564
71.0	3.612564
72.0	3.612564
73.0	3.612564
74.0	3.612564
75.0	3.612564
76.0	3.612564
77.0	3.612564
78.0	3.612564
79.0	3.612564
80.0	3.612564
81.0	3.612564
82.0	3.612564
83.0	3.612564
84.0	3.612564
85.0	3.612564
86.0	3.612564
87.0	3.612564
88.0	3.612564
89.0	3.612564
90.0	3.612564
91.0	3.612564
92.0	3.612564
93.0	3.612564
94.0	3.612564
95.0	3.612564
96.0	3.612564
97.0	3.612564
98.0	3.612564
99.0	3.612564
100.0	3.612564