## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.unique.bam] OUTPUT=Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.unique.dedup.bam METRICS_FILE=Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:25 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7635565	0	0	1766320	321040	0.231328	15981074

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.034265
2.0	1.675668
3.0	2.073436
4.0	2.320114
5.0	2.473092
6.0	2.567961
7.0	2.626795
8.0	2.663281
9.0	2.685908
10.0	2.69994
11.0	2.708643
12.0	2.714039
13.0	2.717386
14.0	2.719461
15.0	2.720749
16.0	2.721547
17.0	2.722042
18.0	2.722349
19.0	2.722539
20.0	2.722657
21.0	2.722731
22.0	2.722776
23.0	2.722804
24.0	2.722822
25.0	2.722832
26.0	2.722839
27.0	2.722843
28.0	2.722846
29.0	2.722847
30.0	2.722848
31.0	2.722849
32.0	2.722849
33.0	2.72285
34.0	2.72285
35.0	2.72285
36.0	2.72285
37.0	2.72285
38.0	2.72285
39.0	2.72285
40.0	2.72285
41.0	2.72285
42.0	2.72285
43.0	2.72285
44.0	2.72285
45.0	2.72285
46.0	2.72285
47.0	2.72285
48.0	2.72285
49.0	2.72285
50.0	2.72285
51.0	2.72285
52.0	2.72285
53.0	2.72285
54.0	2.72285
55.0	2.72285
56.0	2.72285
57.0	2.72285
58.0	2.72285
59.0	2.72285
60.0	2.72285
61.0	2.72285
62.0	2.72285
63.0	2.72285
64.0	2.72285
65.0	2.72285
66.0	2.72285
67.0	2.72285
68.0	2.72285
69.0	2.72285
70.0	2.72285
71.0	2.72285
72.0	2.72285
73.0	2.72285
74.0	2.72285
75.0	2.72285
76.0	2.72285
77.0	2.72285
78.0	2.72285
79.0	2.72285
80.0	2.72285
81.0	2.72285
82.0	2.72285
83.0	2.72285
84.0	2.72285
85.0	2.72285
86.0	2.72285
87.0	2.72285
88.0	2.72285
89.0	2.72285
90.0	2.72285
91.0	2.72285
92.0	2.72285
93.0	2.72285
94.0	2.72285
95.0	2.72285
96.0	2.72285
97.0	2.72285
98.0	2.72285
99.0	2.72285
100.0	2.72285