## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.a.bam] OUTPUT=Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Bennetts_wallaby_ID_TCH4030_Sample2413_Macropus_rufogriseus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8006716	0	0	2118518	540610	0.264593	15075597

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.054961
2.0	1.675231
3.0	2.039922
4.0	2.254344
5.0	2.380415
6.0	2.454539
7.0	2.49812
8.0	2.523744
9.0	2.53881
10.0	2.547668
11.0	2.552876
12.0	2.555938
13.0	2.557738
14.0	2.558797
15.0	2.559419
16.0	2.559785
17.0	2.56
18.0	2.560127
19.0	2.560201
20.0	2.560245
21.0	2.560271
22.0	2.560286
23.0	2.560295
24.0	2.5603
25.0	2.560303
26.0	2.560305
27.0	2.560306
28.0	2.560307
29.0	2.560307
30.0	2.560307
31.0	2.560307
32.0	2.560307
33.0	2.560307
34.0	2.560307
35.0	2.560307
36.0	2.560307
37.0	2.560307
38.0	2.560307
39.0	2.560307
40.0	2.560307
41.0	2.560307
42.0	2.560307
43.0	2.560307
44.0	2.560307
45.0	2.560307
46.0	2.560307
47.0	2.560307
48.0	2.560307
49.0	2.560307
50.0	2.560307
51.0	2.560307
52.0	2.560307
53.0	2.560307
54.0	2.560307
55.0	2.560307
56.0	2.560307
57.0	2.560307
58.0	2.560307
59.0	2.560307
60.0	2.560307
61.0	2.560307
62.0	2.560307
63.0	2.560307
64.0	2.560307
65.0	2.560307
66.0	2.560307
67.0	2.560307
68.0	2.560307
69.0	2.560307
70.0	2.560307
71.0	2.560307
72.0	2.560307
73.0	2.560307
74.0	2.560307
75.0	2.560307
76.0	2.560307
77.0	2.560307
78.0	2.560307
79.0	2.560307
80.0	2.560307
81.0	2.560307
82.0	2.560307
83.0	2.560307
84.0	2.560307
85.0	2.560307
86.0	2.560307
87.0	2.560307
88.0	2.560307
89.0	2.560307
90.0	2.560307
91.0	2.560307
92.0	2.560307
93.0	2.560307
94.0	2.560307
95.0	2.560307
96.0	2.560307
97.0	2.560307
98.0	2.560307
99.0	2.560307
100.0	2.560307