python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MACS2.peaks.RPM.400merge.400bp.table 0 DNAse-osteoblast-Duke-ENCSR000ELJ-ENCFF486MUG.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MACS2.peaks.RPM.400merge.400bp.DNAse-osteoblast-Duke-ENCSR000ELJ-ENCFF486MUG.RPM -RPM -uniqueBAM -singleFieldRegion
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MACS2.peaks.RPM.400merge.400bp.table 0 DNAse-left_arm_bone_male_embryo_81_days-UW-ENCSR976XOY-ENCFF046PCL.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MACS2.peaks.RPM.400merge.400bp.DNAse-left_arm_bone_male_embryo_81_days-UW-ENCSR976XOY-ENCFF046PCL.RPM -RPM -uniqueBAM -singleFieldRegion
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MACS2.peaks.RPM.400merge.400bp.table 0 DNAse-left_leg_bone_male_embryo_81_days-UW-ENCSR431UEM-ENCFF221CNW.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MACS2.peaks.RPM.400merge.400bp.DNAse-left_leg_bone_male_embryo_81_days-UW-ENCSR431UEM-ENCFF221CNW.RPM -RPM -uniqueBAM -singleFieldRegion
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MACS2.peaks.RPM.400merge.400bp.table 0 DNAse-right_arm_bone_male_embryo_81_days-UW-ENCSR274SDO-ENCFF683DNG.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MACS2.peaks.RPM.400merge.400bp.DNAse-right_arm_bone_male_embryo_81_days-UW-ENCSR274SDO-ENCFF683DNG.RPM -RPM -uniqueBAM -singleFieldRegion
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MACS2.peaks.RPM.400merge.400bp.table 0 DNAse-right_leg_bone_male_embryo_81_days-UW-ENCSR449HOQ-ENCFF858KXH.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes MACS2.peaks.RPM.400merge.400bp.DNAse-right_leg_bone_male_embryo_81_days-UW-ENCSR449HOQ-ENCFF858KXH.RPM -RPM -uniqueBAM -singleFieldRegion