## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[liver.2x36mers.rn6.unique.nochrM.bam] OUTPUT=liver.2x36mers.rn6.unique.nochrM.dedup.bam METRICS_FILE=liver.2x36mers.rn6.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Aug 06 20:49:38 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2651094	3421854	0	13463	6993	0.005078	539401897

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.002638
2.0	2.000361
3.0	2.993192
4.0	3.981155
5.0	4.964274
6.0	5.942574
7.0	6.916076
8.0	7.884806
9.0	8.848787
10.0	9.808041
11.0	10.762592
12.0	11.712464
13.0	12.657678
14.0	13.598258
15.0	14.534226
16.0	15.465606
17.0	16.392419
18.0	17.314688
19.0	18.232436
20.0	19.145684
21.0	20.054454
22.0	20.958769
23.0	21.85865
24.0	22.754119
25.0	23.645198
26.0	24.531908
27.0	25.414271
28.0	26.292308
29.0	27.16604
30.0	28.035488
31.0	28.900673
32.0	29.761617
33.0	30.618339
34.0	31.470861
35.0	32.319204
36.0	33.163387
37.0	34.003431
38.0	34.839356
39.0	35.671184
40.0	36.498933
41.0	37.322623
42.0	38.142275
43.0	38.957909
44.0	39.769544
45.0	40.577199
46.0	41.380895
47.0	42.18065
48.0	42.976484
49.0	43.768416
50.0	44.556466
51.0	45.340652
52.0	46.120993
53.0	46.897509
54.0	47.670217
55.0	48.439137
56.0	49.204287
57.0	49.965685
58.0	50.723351
59.0	51.477302
60.0	52.227556
61.0	52.974132
62.0	53.717048
63.0	54.456321
64.0	55.19197
65.0	55.924012
66.0	56.652465
67.0	57.377346
68.0	58.098674
69.0	58.816465
70.0	59.530737
71.0	60.241507
72.0	60.948792
73.0	61.652609
74.0	62.352976
75.0	63.049909
76.0	63.743425
77.0	64.43354
78.0	65.120273
79.0	65.803638
80.0	66.483653
81.0	67.160334
82.0	67.833697
83.0	68.503759
84.0	69.170536
85.0	69.834044
86.0	70.494298
87.0	71.151316
88.0	71.805112
89.0	72.455703
90.0	73.103104
91.0	73.747331
92.0	74.388399
93.0	75.026325
94.0	75.661123
95.0	76.292808
96.0	76.921396
97.0	77.546903
98.0	78.169343
99.0	78.788731
100.0	79.405082