## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastroc.2x36mers.rn6.unique.nochrM.bam] OUTPUT=gastroc.2x36mers.rn6.unique.nochrM.dedup.bam METRICS_FILE=gastroc.2x36mers.rn6.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Aug 06 20:49:37 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3439101	3831676	0	5080	2747	0.001477	2529614987

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.000799
2.0	2.000238
3.0	2.998319
4.0	3.995045
5.0	4.990416
6.0	5.984435
7.0	6.977103
8.0	7.968423
9.0	8.958395
10.0	9.947023
11.0	10.934308
12.0	11.920251
13.0	12.904855
14.0	13.888121
15.0	14.870052
16.0	15.850648
17.0	16.829912
18.0	17.807845
19.0	18.78445
20.0	19.759728
21.0	20.733681
22.0	21.706311
23.0	22.67762
24.0	23.647608
25.0	24.616279
26.0	25.583634
27.0	26.549675
28.0	27.514403
29.0	28.477821
30.0	29.439929
31.0	30.400731
32.0	31.360227
33.0	32.318419
34.0	33.27531
35.0	34.2309
36.0	35.185193
37.0	36.138189
38.0	37.08989
39.0	38.040298
40.0	38.989415
41.0	39.937242
42.0	40.883782
43.0	41.829035
44.0	42.773005
45.0	43.715692
46.0	44.657098
47.0	45.597225
48.0	46.536075
49.0	47.473649
50.0	48.40995
51.0	49.344979
52.0	50.278737
53.0	51.211226
54.0	52.142449
55.0	53.072407
56.0	54.001101
57.0	54.928533
58.0	55.854705
59.0	56.779619
60.0	57.703277
61.0	58.625679
62.0	59.546828
63.0	60.466726
64.0	61.385374
65.0	62.302774
66.0	63.218928
67.0	64.133837
68.0	65.047503
69.0	65.959927
70.0	66.871112
71.0	67.781059
72.0	68.68977
73.0	69.597246
74.0	70.503489
75.0	71.408501
76.0	72.312284
77.0	73.214838
78.0	74.116166
79.0	75.01627
80.0	75.915151
81.0	76.812811
82.0	77.709251
83.0	78.604473
84.0	79.498479
85.0	80.39127
86.0	81.282849
87.0	82.173216
88.0	83.062373
89.0	83.950322
90.0	84.837065
91.0	85.722603
92.0	86.606939
93.0	87.490072
94.0	88.372006
95.0	89.252742
96.0	90.132281
97.0	91.010625
98.0	91.887776
99.0	92.763735
100.0	93.638504