File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF000VXN bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF000VXQ 545266770 Michael Snyder, Stanford fb021ee56dc47b0f6b6ec52e4ae91ab4 https://www.encodeproject.org/files/ENCFF000VXN/@@download/ENCFF000VXN.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VXO bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF000VXS 578116318 Michael Snyder, Stanford 29903f63dc81d53cf9340ffecbece726 https://www.encodeproject.org/files/ENCFF000VXO/@@download/ENCFF000VXO.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VXP bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001VEN 171001 Michael Snyder, Stanford a0cec2e68229344921e2c64359305eb3 https://www.encodeproject.org/files/ENCFF000VXP/@@download/ENCFF000VXP.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VXQ fastq reads ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1083308094 Michael Snyder, Stanford d1233d875c6ad25fe3fbb11b0ca87726 https://www.encodeproject.org/files/ENCFF000VXQ/@@download/ENCFF000VXQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VXS fastq reads ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 997675357 Michael Snyder, Stanford a45e9583466938654111a9c8cc9b5f0c https://www.encodeproject.org/files/ENCFF000VXS/@@download/ENCFF000VXS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VXU bigWig signal ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VXN, ENCFF000VXO 634640473 Michael Snyder, Stanford 58f61f452aff61fcaed48749bed878a0 https://www.encodeproject.org/files/ENCFF000VXU/@@download/ENCFF000VXU.bigWig hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001VEN bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VXN, ENCFF000VXO 68569 Michael Snyder, Stanford f77d9e4af41c62fa20014e547bd3a00a https://www.encodeproject.org/files/ENCFF001VEN/@@download/ENCFF001VEN.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF469MLY bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF807MUK 1143186853 ENCODE Processing Pipeline 4652b1f1466963cf6fc29d7a3302d09f https://www.encodeproject.org/files/ENCFF469MLY/@@download/ENCFF469MLY.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF051OWS bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF807MUK 814061336 ENCODE Processing Pipeline f1b9ee1c53d67ee8b252bbf8743f3cc7 https://www.encodeproject.org/files/ENCFF051OWS/@@download/ENCFF051OWS.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF271GYL bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF807MUK 1234394775 ENCODE Processing Pipeline 968cdb3f1d105c8f6b88552983b3c77f https://www.encodeproject.org/files/ENCFF271GYL/@@download/ENCFF271GYL.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF950RDW bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF807MUK 848095635 ENCODE Processing Pipeline 04debf7c96dde160ae5529ef3ae6a2bc https://www.encodeproject.org/files/ENCFF950RDW/@@download/ENCFF950RDW.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF832UGW bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 176126593 ENCODE Processing Pipeline c906ff4d1cc5a34d42c9a7f7113bf849 https://www.encodeproject.org/files/ENCFF832UGW/@@download/ENCFF832UGW.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF600DHH bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 549627639 ENCODE Processing Pipeline e52d31a92b69f96a7ec17f381c15d0f8 https://www.encodeproject.org/files/ENCFF600DHH/@@download/ENCFF600DHH.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF122PLB bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 3763406 ENCODE Processing Pipeline 746f3e5bb9e3b409bd26d24ef85bf3fd https://www.encodeproject.org/files/ENCFF122PLB/@@download/ENCFF122PLB.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF798UYG bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF226PAC 11267306 ENCODE Processing Pipeline 894c0b16ea5034770ff460e77137436d https://www.encodeproject.org/files/ENCFF798UYG/@@download/ENCFF798UYG.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF801VTB bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 155214980 ENCODE Processing Pipeline d0009edd8ec4b7825b6dfda08bc19d68 https://www.encodeproject.org/files/ENCFF801VTB/@@download/ENCFF801VTB.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF875OHY bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 262620607 ENCODE Processing Pipeline d3c6aeb88334f0f89732a2f9e60d4f6a https://www.encodeproject.org/files/ENCFF875OHY/@@download/ENCFF875OHY.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF226PAC bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 4630641 ENCODE Processing Pipeline 07d0ff0b44c9d0d54475f76f99690bee https://www.encodeproject.org/files/ENCFF226PAC/@@download/ENCFF226PAC.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF547YFC bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 72983539 ENCODE Processing Pipeline c924e1b049ec5fce4c6cc8f7481c9756 https://www.encodeproject.org/files/ENCFF547YFC/@@download/ENCFF547YFC.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF885GJK bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF156VOX 10397058 ENCODE Processing Pipeline 9eb5d49ffc9b4765308fa27931f10e7d https://www.encodeproject.org/files/ENCFF885GJK/@@download/ENCFF885GJK.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF615MLT bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF122PLB 10192512 ENCODE Processing Pipeline 6661573303f546189e652716e02a1837 https://www.encodeproject.org/files/ENCFF615MLT/@@download/ENCFF615MLT.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF219PET bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF112CKJ 194368 ENCODE Processing Pipeline 185bc0c7f742b085b188e3db05effc11 https://www.encodeproject.org/files/ENCFF219PET/@@download/ENCFF219PET.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF689AXJ bed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF122PLB, ENCFF156VOX, ENCFF226PAC 121444 ENCODE Processing Pipeline b61b43061a198f6f74206eee7d7b8e4a https://www.encodeproject.org/files/ENCFF689AXJ/@@download/ENCFF689AXJ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF347NJW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF689AXJ 252290 ENCODE Processing Pipeline 784cfa92ae89c39a2eb1c091d5723128 https://www.encodeproject.org/files/ENCFF347NJW/@@download/ENCFF347NJW.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF019GBI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 301696667 ENCODE Processing Pipeline 6045e2d07412741fe59df2bfc25af61f https://www.encodeproject.org/files/ENCFF019GBI/@@download/ENCFF019GBI.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF156VOX bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 4127787 ENCODE Processing Pipeline 5fb4ad72b7d1e5259ddfb37a52de0c4a https://www.encodeproject.org/files/ENCFF156VOX/@@download/ENCFF156VOX.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF112CKJ bed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF122PLB, ENCFF156VOX, ENCFF226PAC 81714 ENCODE Processing Pipeline 6d4396770c9a11fb03e7c5bcb76db251 https://www.encodeproject.org/files/ENCFF112CKJ/@@download/ENCFF112CKJ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF352MFY bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF643CGH 1233826078 ENCODE Processing Pipeline aad211a42e30e28c09e8e717d5616735 https://www.encodeproject.org/files/ENCFF352MFY/@@download/ENCFF352MFY.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF294YYR bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF643CGH 1147932892 ENCODE Processing Pipeline 3553740a3d74601abc30d496c60f45cc https://www.encodeproject.org/files/ENCFF294YYR/@@download/ENCFF294YYR.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF902JQQ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF643CGH 854486716 ENCODE Processing Pipeline 6cbb5091ed4b1f3dab3ad5df860d5f99 https://www.encodeproject.org/files/ENCFF902JQQ/@@download/ENCFF902JQQ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF528OSH bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF643CGH 814099956 ENCODE Processing Pipeline 7e288a06e29b725d3d219829a007cf50 https://www.encodeproject.org/files/ENCFF528OSH/@@download/ENCFF528OSH.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF095XPE bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VXQ, ENCFF643CGH 1089263985 ENCODE Processing Pipeline 4e321130283f1e808ce033f3f705a7d0 https://www.encodeproject.org/files/ENCFF095XPE/@@download/ENCFF095XPE.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF363SJZ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VXQ, ENCFF643CGH 691766560 ENCODE Processing Pipeline 6dec61e658b48a1fd09fbd4a8adb88c7 https://www.encodeproject.org/files/ENCFF363SJZ/@@download/ENCFF363SJZ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF806NRB bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VXS, ENCFF643CGH 1020722109 ENCODE Processing Pipeline 2c4dd197bcfb3fbec2e46d62d9e320f9 https://www.encodeproject.org/files/ENCFF806NRB/@@download/ENCFF806NRB.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF116MDP bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VXS, ENCFF643CGH 662602065 ENCODE Processing Pipeline c40a2b8febc44e5bef60b235885f259c https://www.encodeproject.org/files/ENCFF116MDP/@@download/ENCFF116MDP.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF133HGM bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 173234583 ENCODE Processing Pipeline c00a729412915337eb5116a155b2916b https://www.encodeproject.org/files/ENCFF133HGM/@@download/ENCFF133HGM.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF194AQI bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 72796934 ENCODE Processing Pipeline c034da117fa19acc90a5f25046abc613 https://www.encodeproject.org/files/ENCFF194AQI/@@download/ENCFF194AQI.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF308CXB bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 287026059 ENCODE Processing Pipeline c57cf03794139883504fc8c94e8410b5 https://www.encodeproject.org/files/ENCFF308CXB/@@download/ENCFF308CXB.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF100QMI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 513418516 ENCODE Processing Pipeline ab68c56253574ec68b3bff905f48e083 https://www.encodeproject.org/files/ENCFF100QMI/@@download/ENCFF100QMI.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF133RGA bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 149492814 ENCODE Processing Pipeline 84549ae63950afed6063c75fd2e04596 https://www.encodeproject.org/files/ENCFF133RGA/@@download/ENCFF133RGA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF176NQI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 244790161 ENCODE Processing Pipeline d6cc3aa9d918c58fa070956ce852a529 https://www.encodeproject.org/files/ENCFF176NQI/@@download/ENCFF176NQI.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF186AWV bed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH, ENCFF366QIF, ENCFF419RSJ, ENCFF647VGC 131726 ENCODE Processing Pipeline 7549657ec0bdc7bb4f5781b6cb97f5a0 https://www.encodeproject.org/files/ENCFF186AWV/@@download/ENCFF186AWV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF786ENY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF186AWV 265833 ENCODE Processing Pipeline 1e508e66355713547d058463b2f45800 https://www.encodeproject.org/files/ENCFF786ENY/@@download/ENCFF786ENY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF366QIF bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 3581980 ENCODE Processing Pipeline d21629a59b3e75219a6f4e4b6dea9f24 https://www.encodeproject.org/files/ENCFF366QIF/@@download/ENCFF366QIF.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF678HBY bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF366QIF 7766125 ENCODE Processing Pipeline f5d9f1340528198b25d237a797f38d13 https://www.encodeproject.org/files/ENCFF678HBY/@@download/ENCFF678HBY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF647VGC bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 4041273 ENCODE Processing Pipeline 333b31b10a21401d7dc0d9550cb9522d https://www.encodeproject.org/files/ENCFF647VGC/@@download/ENCFF647VGC.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF249GLP bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH 11082609 ENCODE Processing Pipeline e92cc3ff002f19b3b651fb05876589ff https://www.encodeproject.org/files/ENCFF249GLP/@@download/ENCFF249GLP.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF335NCG bed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH, ENCFF366QIF, ENCFF419RSJ, ENCFF647VGC 79997 ENCODE Processing Pipeline b3e824c56907b93c27efeaaf28ca0b18 https://www.encodeproject.org/files/ENCFF335NCG/@@download/ENCFF335NCG.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF237KOH bed narrowPeak peaks and background as input for IDR ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 4473460 ENCODE Processing Pipeline 62d32aa068d87fbba1d431c769835798 https://www.encodeproject.org/files/ENCFF237KOH/@@download/ENCFF237KOH.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF329MFJ bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF647VGC 10105070 ENCODE Processing Pipeline 10e640e2801334c75a69ea0d640ab46f https://www.encodeproject.org/files/ENCFF329MFJ/@@download/ENCFF329MFJ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF703OPC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF335NCG 157712 ENCODE Processing Pipeline 2212549a0b81347ec95cee445e10e2f0 https://www.encodeproject.org/files/ENCFF703OPC/@@download/ENCFF703OPC.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF434EYR fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF079KXJ 779342388 Michael Snyder, Stanford 707de45a1e9ee0cf0da09433352957ce https://www.encodeproject.org/files/ENCFF434EYR/@@download/ENCFF434EYR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF079KXJ fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF434EYR 760779845 Michael Snyder, Stanford cea3bb82ec232170786ef0f9824bb83f https://www.encodeproject.org/files/ENCFF079KXJ/@@download/ENCFF079KXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF910HKX fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF629ZTW 1133747720 Michael Snyder, Stanford ec623c6955709be8965d95c104318e33 https://www.encodeproject.org/files/ENCFF910HKX/@@download/ENCFF910HKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF629ZTW fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF910HKX 1156462092 Michael Snyder, Stanford 62fff06f78f34c94327d4a514af6aba5 https://www.encodeproject.org/files/ENCFF629ZTW/@@download/ENCFF629ZTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF393JDU fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF758PBW 2893834765 Michael Snyder, Stanford 3cc639f61a3942ddab96d0fc8e098315 SRA:SRR6213716 https://www.encodeproject.org/files/ENCFF393JDU/@@download/ENCFF393JDU.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF522PJZ fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF219PKK 4951681045 Michael Snyder, Stanford 03c608d86ef7654d4f8196ed6f3c2962 SRA:SRR6213717 https://www.encodeproject.org/files/ENCFF522PJZ/@@download/ENCFF522PJZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF219PKK fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF522PJZ 4662412169 Michael Snyder, Stanford a6c31658ad21ae0538d3149b3a718db0 SRA:SRR6213717 https://www.encodeproject.org/files/ENCFF219PKK/@@download/ENCFF219PKK.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF758PBW fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF393JDU 2753112219 Michael Snyder, Stanford 6d7b24f245d87d3ef9dfc59412afae6e SRA:SRR6213716 https://www.encodeproject.org/files/ENCFF758PBW/@@download/ENCFF758PBW.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF295PNK bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF643CGH, ENCFF758PBW 4780517353 ENCODE Processing Pipeline 2f511986efaf1f5f45dba91df1dc6560 https://www.encodeproject.org/files/ENCFF295PNK/@@download/ENCFF295PNK.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF685SRU bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF643CGH 7981926116 ENCODE Processing Pipeline a71bf9f23b481cd801d1b9f8f1b5c128 https://www.encodeproject.org/files/ENCFF685SRU/@@download/ENCFF685SRU.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF855SJQ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF643CGH, ENCFF758PBW 2570768417 ENCODE Processing Pipeline 5e44a5ae55b790739d1edb50096b3a8d https://www.encodeproject.org/files/ENCFF855SJQ/@@download/ENCFF855SJQ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF550TMJ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF643CGH 4765074197 ENCODE Processing Pipeline 6e4c5567a37413194ee573363b9af0df https://www.encodeproject.org/files/ENCFF550TMJ/@@download/ENCFF550TMJ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF632OPE bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 1065666158 ENCODE Processing Pipeline c63670d6e7cba57e2664cb2dcda97f30 https://www.encodeproject.org/files/ENCFF632OPE/@@download/ENCFF632OPE.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF305TQW bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 912788141 ENCODE Processing Pipeline 5e792a98813a6525c18b21cddab1219d https://www.encodeproject.org/files/ENCFF305TQW/@@download/ENCFF305TQW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF552URD bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 2088354957 ENCODE Processing Pipeline 68cae001e62649942a6b666e3be9d5df https://www.encodeproject.org/files/ENCFF552URD/@@download/ENCFF552URD.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF386YOK bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 1976816521 ENCODE Processing Pipeline ea4adf595467048487acd3bb8fb8be21 https://www.encodeproject.org/files/ENCFF386YOK/@@download/ENCFF386YOK.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF239BOX bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 1659052991 ENCODE Processing Pipeline b86dde23fd8eae3a1eeb8fe5b0b25d10 https://www.encodeproject.org/files/ENCFF239BOX/@@download/ENCFF239BOX.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF367WTF bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 2302438030 ENCODE Processing Pipeline b8fd1b5fd97964c4a1beb8b7e336e872 https://www.encodeproject.org/files/ENCFF367WTF/@@download/ENCFF367WTF.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF172RVL bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF208VBZ 13450572 ENCODE Processing Pipeline fc127d3beffe2f138f54bd6568af223b https://www.encodeproject.org/files/ENCFF172RVL/@@download/ENCFF172RVL.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF414COR bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 7117560 ENCODE Processing Pipeline 951a89accd11d8f999c61af729349e9e https://www.encodeproject.org/files/ENCFF414COR/@@download/ENCFF414COR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF169ZAN bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 7242858 ENCODE Processing Pipeline 56b2ba5cf8d5cdfadbc910ced261e823 https://www.encodeproject.org/files/ENCFF169ZAN/@@download/ENCFF169ZAN.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF208VBZ bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 6380883 ENCODE Processing Pipeline f407d7e045a9e8fbdb1034cc0709a35c https://www.encodeproject.org/files/ENCFF208VBZ/@@download/ENCFF208VBZ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF630TMV bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF414COR 13438120 ENCODE Processing Pipeline 22fc1c1e465dfea2d8b45e597b742a67 https://www.encodeproject.org/files/ENCFF630TMV/@@download/ENCFF630TMV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF275NTD bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN 13386314 ENCODE Processing Pipeline 9e657d3383fbc6c4042f628ad89c9d38 https://www.encodeproject.org/files/ENCFF275NTD/@@download/ENCFF275NTD.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF835YGE bed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN, ENCFF208VBZ, ENCFF414COR, ENCFF419RSJ 258351 ENCODE Processing Pipeline 8c3728cf92c296a8ec479e40922c1d78 https://www.encodeproject.org/files/ENCFF835YGE/@@download/ENCFF835YGE.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF115DEU bigBed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF996NBR 627430 ENCODE Processing Pipeline bfda212cfb5ffe34412803b59cb167b1 https://www.encodeproject.org/files/ENCFF115DEU/@@download/ENCFF115DEU.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF425AIW bigBed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF835YGE 516494 ENCODE Processing Pipeline 2a8aa88d999bd0eda9183c208adbaee4 https://www.encodeproject.org/files/ENCFF425AIW/@@download/ENCFF425AIW.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF996NBR bed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN, ENCFF208VBZ, ENCFF414COR, ENCFF419RSJ 333536 ENCODE Processing Pipeline 744d8c1f7188f92061c27c8bee6f4ffa https://www.encodeproject.org/files/ENCFF996NBR/@@download/ENCFF996NBR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF002ICQ bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF807MUK 7985632748 ENCODE Processing Pipeline eff5340ee5936870eaf202a219e6da95 https://www.encodeproject.org/files/ENCFF002ICQ/@@download/ENCFF002ICQ.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF195ADD bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF807MUK 4758972576 ENCODE Processing Pipeline e23d9df77784794eb6932e91e37ea62d https://www.encodeproject.org/files/ENCFF195ADD/@@download/ENCFF195ADD.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF170QJT bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF758PBW, ENCFF807MUK 2567429331 ENCODE Processing Pipeline 31ab2c31031c51a4b1715ae77271a9fa https://www.encodeproject.org/files/ENCFF170QJT/@@download/ENCFF170QJT.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF843DWJ bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF758PBW, ENCFF807MUK 4784269198 ENCODE Processing Pipeline 9b450a666c8333250946478514d3e434 https://www.encodeproject.org/files/ENCFF843DWJ/@@download/ENCFF843DWJ.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF171QIK bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 1065526331 ENCODE Processing Pipeline 33fbfeb355e6ddcd50fc9a2e6403d8bd https://www.encodeproject.org/files/ENCFF171QIK/@@download/ENCFF171QIK.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF182DTK bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 1754749945 ENCODE Processing Pipeline bb0b02c034cf10ccdcae18047645d805 https://www.encodeproject.org/files/ENCFF182DTK/@@download/ENCFF182DTK.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF519KSR bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 2174247265 ENCODE Processing Pipeline facc8e609192a102f9ab35f78c745808 https://www.encodeproject.org/files/ENCFF519KSR/@@download/ENCFF519KSR.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF064PBU bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 1071990010 ENCODE Processing Pipeline 2d17372b0eaaa52a7f2a03c03ff7c753 https://www.encodeproject.org/files/ENCFF064PBU/@@download/ENCFF064PBU.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF017TFI bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 2316579135 ENCODE Processing Pipeline 927de2f066c4d231265dae1dc6a16649 https://www.encodeproject.org/files/ENCFF017TFI/@@download/ENCFF017TFI.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF270NTV bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 7114875 ENCODE Processing Pipeline 059805cdf7eca1e7e69fced8db3c4870 https://www.encodeproject.org/files/ENCFF270NTV/@@download/ENCFF270NTV.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF445UJF bed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014TGJ, ENCFF270NTV, ENCFF310LKB 329507 ENCODE Processing Pipeline f6fdb19b8e301226eee898e1023fe74c https://www.encodeproject.org/files/ENCFF445UJF/@@download/ENCFF445UJF.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF717HFR bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 1997717337 ENCODE Processing Pipeline 7d09a224f91106f2b0d0404570045b2f https://www.encodeproject.org/files/ENCFF717HFR/@@download/ENCFF717HFR.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF310LKB bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 6375649 ENCODE Processing Pipeline 830475561fdc0192989ad9f5baac0738 https://www.encodeproject.org/files/ENCFF310LKB/@@download/ENCFF310LKB.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF014TGJ bed narrowPeak peaks and background as input for IDR ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 7239768 ENCODE Processing Pipeline 700fc1e8997fb8def5756e52fe7293cd https://www.encodeproject.org/files/ENCFF014TGJ/@@download/ENCFF014TGJ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF647GCE bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF310LKB 13432004 ENCODE Processing Pipeline bb43a519f50ffbe3871cea925d43b3bf https://www.encodeproject.org/files/ENCFF647GCE/@@download/ENCFF647GCE.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF456ODJ bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF270NTV 13427749 ENCODE Processing Pipeline a88aba96f7d3963bd8fe5c6a3993ab4d https://www.encodeproject.org/files/ENCFF456ODJ/@@download/ENCFF456ODJ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF521DFO bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF014TGJ 13377849 ENCODE Processing Pipeline d9451eeb5c62c5d0d15908974f04280b https://www.encodeproject.org/files/ENCFF521DFO/@@download/ENCFF521DFO.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF388DPA bed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014TGJ, ENCFF270NTV, ENCFF310LKB 257624 ENCODE Processing Pipeline f530d2f41e02007060057add9d54d2df https://www.encodeproject.org/files/ENCFF388DPA/@@download/ENCFF388DPA.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF193UZT bigBed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF388DPA 514659 ENCODE Processing Pipeline 8a29abe9632358d6ec2d8857a7d082a0 https://www.encodeproject.org/files/ENCFF193UZT/@@download/ENCFF193UZT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF990GBV bigBed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF445UJF 620374 ENCODE Processing Pipeline 3057da991cc4ed0bfc6cb3d62b64aeda https://www.encodeproject.org/files/ENCFF990GBV/@@download/ENCFF990GBV.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF172ORI fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF258XJK 3684043911 Michael Snyder, Stanford dd2f6af37dfd82512907e04d19ab6c75 SRA:SRR5111987 https://www.encodeproject.org/files/ENCFF172ORI/@@download/ENCFF172ORI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF914JSK fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF394TEH 2753825174 Michael Snyder, Stanford 22a8049dcb637cb21405b20b5191fd2e SRA:SRR5111986 https://www.encodeproject.org/files/ENCFF914JSK/@@download/ENCFF914JSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking ENCFF394TEH fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF914JSK 2786851730 Michael Snyder, Stanford 12455758b53aa4e0bdff66067bb64d07 SRA:SRR5111986 https://www.encodeproject.org/files/ENCFF394TEH/@@download/ENCFF394TEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking ENCFF258XJK fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF172ORI 3633252575 Michael Snyder, Stanford 39f1276053e8a6f2fdabba3b614ce022 SRA:SRR5111987 https://www.encodeproject.org/files/ENCFF258XJK/@@download/ENCFF258XJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF856WGT bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF807MUK, ENCFF914JSK 5560471744 ENCODE Processing Pipeline c203ee66d2c56dfe1352f39dc6d9cc95 https://www.encodeproject.org/files/ENCFF856WGT/@@download/ENCFF856WGT.bam hg19 released mild to moderate bottlenecking ENCFF627EOF bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF807MUK 7124079385 ENCODE Processing Pipeline 07a2fadc2a5dcc0f81d78e181b73eef6 https://www.encodeproject.org/files/ENCFF627EOF/@@download/ENCFF627EOF.bam hg19 released mild to moderate bottlenecking ENCFF093ATD bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF807MUK, ENCFF914JSK 4292849395 ENCODE Processing Pipeline ef72fbb0565fbeeb524a41bb1df31def https://www.encodeproject.org/files/ENCFF093ATD/@@download/ENCFF093ATD.bam hg19 released mild to moderate bottlenecking ENCFF869BJB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF807MUK 5433620911 ENCODE Processing Pipeline 943e016f126c602ae61af91418eee130 https://www.encodeproject.org/files/ENCFF869BJB/@@download/ENCFF869BJB.bam hg19 released mild to moderate bottlenecking ENCFF558VPD bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF643CGH 7128681584 ENCODE Processing Pipeline a4ca3f436a1a8ccf141825ae27c4aa7a https://www.encodeproject.org/files/ENCFF558VPD/@@download/ENCFF558VPD.bam GRCh38 released mild to moderate bottlenecking ENCFF479JEE bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF643CGH, ENCFF914JSK 5565356663 ENCODE Processing Pipeline 9da09270748d05927ebed167c7a5a316 https://www.encodeproject.org/files/ENCFF479JEE/@@download/ENCFF479JEE.bam GRCh38 released mild to moderate bottlenecking ENCFF700PHB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF643CGH, ENCFF914JSK 4301687007 ENCODE Processing Pipeline 12a80c43bdbfe0d4e46eb9cebd61019d https://www.encodeproject.org/files/ENCFF700PHB/@@download/ENCFF700PHB.bam GRCh38 released mild to moderate bottlenecking ENCFF603RWK bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF643CGH 5450252101 ENCODE Processing Pipeline baf02b1e396bacf9ef264fcc2752eaf8 https://www.encodeproject.org/files/ENCFF603RWK/@@download/ENCFF603RWK.bam GRCh38 released mild to moderate bottlenecking ENCFF371DYO bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 1002123087 ENCODE Processing Pipeline 18973f6398c7b0628d4021eb69d178e7 https://www.encodeproject.org/files/ENCFF371DYO/@@download/ENCFF371DYO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF249AMY bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 970754062 ENCODE Processing Pipeline 53163bc56733f9bf0344bf61d3194190 https://www.encodeproject.org/files/ENCFF249AMY/@@download/ENCFF249AMY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF362LIB bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 2000124726 ENCODE Processing Pipeline 6ee272b6a0918aa55c5947daa839ab66 https://www.encodeproject.org/files/ENCFF362LIB/@@download/ENCFF362LIB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF740CTY bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 882301141 ENCODE Processing Pipeline e84a2c15a1aa1d01d1ef289781394e71 https://www.encodeproject.org/files/ENCFF740CTY/@@download/ENCFF740CTY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF805YAT bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 1147238618 ENCODE Processing Pipeline 51dbb21cca03c00b2fdc382bbd9fbd37 https://www.encodeproject.org/files/ENCFF805YAT/@@download/ENCFF805YAT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF040BDS bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 6844500 ENCODE Processing Pipeline dbe4ebcabd406cd58f6cadb73301dade https://www.encodeproject.org/files/ENCFF040BDS/@@download/ENCFF040BDS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF208YLJ bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 6240681 ENCODE Processing Pipeline c9ce79efd3bde39254d5a1fbeb447d18 https://www.encodeproject.org/files/ENCFF208YLJ/@@download/ENCFF208YLJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604ISL bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 2028988868 ENCODE Processing Pipeline b1ae1d5326317403540ef1b7c3572815 https://www.encodeproject.org/files/ENCFF604ISL/@@download/ENCFF604ISL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF288AAV bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 7162270 ENCODE Processing Pipeline 644c6e2b896534a37d54a2ffc512acfc https://www.encodeproject.org/files/ENCFF288AAV/@@download/ENCFF288AAV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF788VTS bed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040BDS, ENCFF208YLJ, ENCFF288AAV, ENCFF419RSJ 491068 ENCODE Processing Pipeline f767869d412e3d7488f0cc86e922ad7d https://www.encodeproject.org/files/ENCFF788VTS/@@download/ENCFF788VTS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF335ADU bed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040BDS, ENCFF208YLJ, ENCFF288AAV, ENCFF419RSJ 652047 ENCODE Processing Pipeline 76d70517bd30cb820b113c9da5dad4e1 https://www.encodeproject.org/files/ENCFF335ADU/@@download/ENCFF335ADU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF262EYY bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040BDS 13591733 ENCODE Processing Pipeline d6a859666387952e0fd9e5063825266b https://www.encodeproject.org/files/ENCFF262EYY/@@download/ENCFF262EYY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF615OPK bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF208YLJ 13553777 ENCODE Processing Pipeline 760dda3830649875728e36a9a7a33331 https://www.encodeproject.org/files/ENCFF615OPK/@@download/ENCFF615OPK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF887VYV bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF288AAV 13501709 ENCODE Processing Pipeline 197d3e71c7e15082b6deb0da67571fef https://www.encodeproject.org/files/ENCFF887VYV/@@download/ENCFF887VYV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF794ABW bigBed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF788VTS 1096667 ENCODE Processing Pipeline 954fe121fece13ca9057ca4ac05b1d93 https://www.encodeproject.org/files/ENCFF794ABW/@@download/ENCFF794ABW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF094LJD bigBed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF335ADU 1346036 ENCODE Processing Pipeline 6b9a769b7b2c844155677764852fdbe1 https://www.encodeproject.org/files/ENCFF094LJD/@@download/ENCFF094LJD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF312OPS bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 1137687106 ENCODE Processing Pipeline e77d26fb5eda556f2e4acfae5f2a6269 https://www.encodeproject.org/files/ENCFF312OPS/@@download/ENCFF312OPS.bigWig hg19 released mild to moderate bottlenecking ENCFF930KEW bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 1061062263 ENCODE Processing Pipeline 38813fa4ca714a1576d2d0361cdf872e https://www.encodeproject.org/files/ENCFF930KEW/@@download/ENCFF930KEW.bigWig hg19 released mild to moderate bottlenecking ENCFF714IDV bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 1865768445 ENCODE Processing Pipeline 5d2429b9ac3c762f0b144edfb40471e7 https://www.encodeproject.org/files/ENCFF714IDV/@@download/ENCFF714IDV.bigWig hg19 released mild to moderate bottlenecking ENCFF505VHQ bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 1151258932 ENCODE Processing Pipeline f5d4bdb4d4c10ebbf83d5d70376c6fd9 https://www.encodeproject.org/files/ENCFF505VHQ/@@download/ENCFF505VHQ.bigWig hg19 released mild to moderate bottlenecking ENCFF261ETE bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 982406254 ENCODE Processing Pipeline a09a7f72da2850ebae15a0c45ecd9a10 https://www.encodeproject.org/files/ENCFF261ETE/@@download/ENCFF261ETE.bigWig hg19 released mild to moderate bottlenecking ENCFF837DPP bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 2055771568 ENCODE Processing Pipeline f9320e4ae4b780e4d51072ce7f050175 https://www.encodeproject.org/files/ENCFF837DPP/@@download/ENCFF837DPP.bigWig hg19 released mild to moderate bottlenecking ENCFF161FIT bigBed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF618KHI 833493 ENCODE Processing Pipeline 5440ccafd01c3cccaf15696c2a18486b https://www.encodeproject.org/files/ENCFF161FIT/@@download/ENCFF161FIT.bigBed hg19 released mild to moderate bottlenecking ENCFF221NJD bigBed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF020GMZ 1306030 ENCODE Processing Pipeline 104ce0241e552130c680df103d36b5b7 https://www.encodeproject.org/files/ENCFF221NJD/@@download/ENCFF221NJD.bigBed hg19 released mild to moderate bottlenecking ENCFF049YTC bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 6575051 ENCODE Processing Pipeline 48fe60fc518d56b3898230f0ff2c8eb2 https://www.encodeproject.org/files/ENCFF049YTC/@@download/ENCFF049YTC.bed.gz hg19 released mild to moderate bottlenecking ENCFF197JKK bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF825QFX 13423278 ENCODE Processing Pipeline f44154979999838463cf5f1e5c75e35f https://www.encodeproject.org/files/ENCFF197JKK/@@download/ENCFF197JKK.bigBed hg19 released mild to moderate bottlenecking ENCFF020GMZ bed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF049YTC, ENCFF583BIS, ENCFF825QFX 624856 ENCODE Processing Pipeline 12bb6684c3e7567ee87c6ac3c7b4af68 https://www.encodeproject.org/files/ENCFF020GMZ/@@download/ENCFF020GMZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF583BIS bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 6237077 ENCODE Processing Pipeline e4c678d2343369f34a9f466600698885 https://www.encodeproject.org/files/ENCFF583BIS/@@download/ENCFF583BIS.bed.gz hg19 released mild to moderate bottlenecking ENCFF825QFX bed narrowPeak peaks and background as input for IDR ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 7097520 ENCODE Processing Pipeline b8edfeb454745c14c293da70cd95aca7 https://www.encodeproject.org/files/ENCFF825QFX/@@download/ENCFF825QFX.bed.gz hg19 released mild to moderate bottlenecking ENCFF618KHI bed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF049YTC, ENCFF583BIS, ENCFF825QFX 472332 ENCODE Processing Pipeline a748bf20f034d371da0956242b448c51 https://www.encodeproject.org/files/ENCFF618KHI/@@download/ENCFF618KHI.bed.gz hg19 released mild to moderate bottlenecking ENCFF370LAY bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF049YTC 13277166 ENCODE Processing Pipeline f974ab49a7c123f40163ebc0ec4a00e0 https://www.encodeproject.org/files/ENCFF370LAY/@@download/ENCFF370LAY.bigBed hg19 released mild to moderate bottlenecking ENCFF443EWG bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF583BIS 13545182 ENCODE Processing Pipeline 56a2ab6289a4920a617079baf491704a https://www.encodeproject.org/files/ENCFF443EWG/@@download/ENCFF443EWG.bigBed hg19 released mild to moderate bottlenecking ENCFF318CLL bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF807MUK 1266504607 ENCODE Processing Pipeline 7ea7b7ca62c5c629d652effc2319791f https://www.encodeproject.org/files/ENCFF318CLL/@@download/ENCFF318CLL.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF638IWQ bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF807MUK 1363482903 ENCODE Processing Pipeline 9a9217e3df2f74f69d463689e8f470f7 https://www.encodeproject.org/files/ENCFF638IWQ/@@download/ENCFF638IWQ.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002ECD fastq reads ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 1 36 single-ended 1031549890 Michael Snyder, Stanford 81e9ffc677c272c9b663252b378bb01f https://www.encodeproject.org/files/ENCFF002ECD/@@download/ENCFF002ECD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002ECH fastq reads ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 1 36 single-ended 1138814369 Michael Snyder, Stanford 461ff206f6d7814834d7c3fd691625bb https://www.encodeproject.org/files/ENCFF002ECH/@@download/ENCFF002ECH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF080JID bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF807MUK 873799080 ENCODE Processing Pipeline b67e0a8d2465045cde5bbf7ebefa983c https://www.encodeproject.org/files/ENCFF080JID/@@download/ENCFF080JID.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF517IMC bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF807MUK 906767182 ENCODE Processing Pipeline 2c25c5de03fcb6a411aefbf346749b90 https://www.encodeproject.org/files/ENCFF517IMC/@@download/ENCFF517IMC.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF704DLD bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF643CGH 1270264033 ENCODE Processing Pipeline 3011ef9a2147749bce523629e6083a52 https://www.encodeproject.org/files/ENCFF704DLD/@@download/ENCFF704DLD.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF126UEC bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF643CGH 1369127053 ENCODE Processing Pipeline 2241c1845959b0250f94803cb752e48f https://www.encodeproject.org/files/ENCFF126UEC/@@download/ENCFF126UEC.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF302YQK bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF643CGH 907057696 ENCODE Processing Pipeline 002cb9a381fc0d1a87ddf3a18c0d34ce https://www.encodeproject.org/files/ENCFF302YQK/@@download/ENCFF302YQK.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF185OAP bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF643CGH 879964734 ENCODE Processing Pipeline 3a5b5a876fb046bf9a2f24ccdd5e19c7 https://www.encodeproject.org/files/ENCFF185OAP/@@download/ENCFF185OAP.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF473RRH bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 547411478 ENCODE Processing Pipeline 845f0e0a15908eb2a19d9400db1b6f26 https://www.encodeproject.org/files/ENCFF473RRH/@@download/ENCFF473RRH.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509SLD bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 455153611 ENCODE Processing Pipeline df3051e61bffb0d1fb47de5a99249128 https://www.encodeproject.org/files/ENCFF509SLD/@@download/ENCFF509SLD.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF849ZXL bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 1185454041 ENCODE Processing Pipeline ce7878f16fa06bc4958c90533effab69 https://www.encodeproject.org/files/ENCFF849ZXL/@@download/ENCFF849ZXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF649EHY bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 487390772 ENCODE Processing Pipeline 30594a70a93c27746c717a84a1ac8e2b https://www.encodeproject.org/files/ENCFF649EHY/@@download/ENCFF649EHY.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF735YSE bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 1044162872 ENCODE Processing Pipeline 32376074ddf24901c3cd0a4676832284 https://www.encodeproject.org/files/ENCFF735YSE/@@download/ENCFF735YSE.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF529ZOV bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 483644394 ENCODE Processing Pipeline 6f78e0120dd4c5b9ef13ad59b81294a7 https://www.encodeproject.org/files/ENCFF529ZOV/@@download/ENCFF529ZOV.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF846DZW bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF346DIU 11124211 ENCODE Processing Pipeline 8a8a9074513388cc629056de9985fa0e https://www.encodeproject.org/files/ENCFF846DZW/@@download/ENCFF846DZW.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF299BSA bed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF110RYE, ENCFF346DIU, ENCFF419RSJ, ENCFF996UMX 134310 ENCODE Processing Pipeline 2bdbcb401039f0dc85eaf894a02b01c0 https://www.encodeproject.org/files/ENCFF299BSA/@@download/ENCFF299BSA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF110RYE bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 4774664 ENCODE Processing Pipeline 570268cfa0b2eefeaec4c54027100c4c https://www.encodeproject.org/files/ENCFF110RYE/@@download/ENCFF110RYE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF346DIU bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 4561042 ENCODE Processing Pipeline 1cc47a98240db68b3f6074bb3824f201 https://www.encodeproject.org/files/ENCFF346DIU/@@download/ENCFF346DIU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF236HWP bigBed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF224WII 391387 ENCODE Processing Pipeline ed1d97ed9bc81090c56b91465542cce3 https://www.encodeproject.org/files/ENCFF236HWP/@@download/ENCFF236HWP.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF996UMX bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 5470775 ENCODE Processing Pipeline 0dfc2626613f601d3bcfd977ab3ea127 https://www.encodeproject.org/files/ENCFF996UMX/@@download/ENCFF996UMX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF565GUC bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF996UMX 10507303 ENCODE Processing Pipeline 27c7ea760ebc05ac064acfc1c2ab9bea https://www.encodeproject.org/files/ENCFF565GUC/@@download/ENCFF565GUC.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF014YXA bigBed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF299BSA 315558 ENCODE Processing Pipeline 965719d2f0ec9c8b9680d4af01324695 https://www.encodeproject.org/files/ENCFF014YXA/@@download/ENCFF014YXA.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF125PYL bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF110RYE 11129108 ENCODE Processing Pipeline 30cd16c32a067b479f067c86a6006294 https://www.encodeproject.org/files/ENCFF125PYL/@@download/ENCFF125PYL.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF224WII bed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF110RYE, ENCFF346DIU, ENCFF419RSJ, ENCFF996UMX 182392 ENCODE Processing Pipeline ad216a5240e0fec8f1ba5a20940bfdb9 https://www.encodeproject.org/files/ENCFF224WII/@@download/ENCFF224WII.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258QFZ bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 627577010 ENCODE Processing Pipeline a57751c28ec5db0508fb6003a245faa7 https://www.encodeproject.org/files/ENCFF258QFZ/@@download/ENCFF258QFZ.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF268DKR bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 502005169 ENCODE Processing Pipeline 3e6c4716d2485b9c22b3371137313858 https://www.encodeproject.org/files/ENCFF268DKR/@@download/ENCFF268DKR.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF003JQS bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 487120448 ENCODE Processing Pipeline fd221e6dc7deb84c95242b5992afe84d https://www.encodeproject.org/files/ENCFF003JQS/@@download/ENCFF003JQS.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF256WMI bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 921060231 ENCODE Processing Pipeline f0269d160e14faf00a06fe334e667deb https://www.encodeproject.org/files/ENCFF256WMI/@@download/ENCFF256WMI.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF244PCF bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 474955095 ENCODE Processing Pipeline 6bbbe0e4601725f054e4cfb9a957d6cb https://www.encodeproject.org/files/ENCFF244PCF/@@download/ENCFF244PCF.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF508ATZ bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 1051698740 ENCODE Processing Pipeline f616b382cf0e36889065f3bce2deac72 https://www.encodeproject.org/files/ENCFF508ATZ/@@download/ENCFF508ATZ.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF380MCV bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 5961157 ENCODE Processing Pipeline 07643d650a18ece194e9545c529e2ec0 https://www.encodeproject.org/files/ENCFF380MCV/@@download/ENCFF380MCV.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF772RKI bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 4773186 ENCODE Processing Pipeline 5057aa551409cf23ab7dea7c285bd7ea https://www.encodeproject.org/files/ENCFF772RKI/@@download/ENCFF772RKI.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF527IRJ bed narrowPeak peaks and background as input for IDR ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 4528877 ENCODE Processing Pipeline 5c5012d2fcd38532b8da66e0c4f14311 https://www.encodeproject.org/files/ENCFF527IRJ/@@download/ENCFF527IRJ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF677FRQ bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF772RKI 11119730 ENCODE Processing Pipeline 6f4af6514f01efc05ab25c66ae7e09bd https://www.encodeproject.org/files/ENCFF677FRQ/@@download/ENCFF677FRQ.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF124KME bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF527IRJ 11088249 ENCODE Processing Pipeline e027e28555ce9873a8eb7e0469aaef54 https://www.encodeproject.org/files/ENCFF124KME/@@download/ENCFF124KME.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF005LCQ bed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF001TDO, ENCFF380MCV, ENCFF527IRJ, ENCFF772RKI 129893 ENCODE Processing Pipeline b5b28ba9aadd76870d1cbea25c6579a0 https://www.encodeproject.org/files/ENCFF005LCQ/@@download/ENCFF005LCQ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF941JSP bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF380MCV 11496747 ENCODE Processing Pipeline 889ada35d6a05a041e78f47755498d7b https://www.encodeproject.org/files/ENCFF941JSP/@@download/ENCFF941JSP.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF998TXK bigBed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF005LCQ 254747 ENCODE Processing Pipeline e3022c4c14ea644f917ebeaed85f8b99 https://www.encodeproject.org/files/ENCFF998TXK/@@download/ENCFF998TXK.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF113FOY bigBed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF144FCI 381288 ENCODE Processing Pipeline 06a736e2dbd95b408bff1d825df361ac https://www.encodeproject.org/files/ENCFF113FOY/@@download/ENCFF113FOY.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF144FCI bed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF001TDO, ENCFF380MCV, ENCFF527IRJ, ENCFF772RKI 175071 ENCODE Processing Pipeline 725a70663ca7828abe2e411b97c0330b https://www.encodeproject.org/files/ENCFF144FCI/@@download/ENCFF144FCI.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF953TUT bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF807MUK 4542655100 ENCODE Processing Pipeline c8831742b56cc496c75444c4c90f0d21 https://www.encodeproject.org/files/ENCFF953TUT/@@download/ENCFF953TUT.bam hg19 released low read depth ENCFF955CZU bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF807MUK 3601288219 ENCODE Processing Pipeline 6e0bcbbd79793987f7366739f296d65d https://www.encodeproject.org/files/ENCFF955CZU/@@download/ENCFF955CZU.bam hg19 released low read depth ENCFF050IAW fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF243YFW 1609046183 Michael Snyder, Stanford f94a6d17083b79a91a69c244fc25eb17 SRA:SRR5112142 https://www.encodeproject.org/files/ENCFF050IAW/@@download/ENCFF050IAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released low read depth ENCFF243YFW fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF050IAW 1658382673 Michael Snyder, Stanford ef426a340e8493bbb96539726b398715 SRA:SRR5112142 https://www.encodeproject.org/files/ENCFF243YFW/@@download/ENCFF243YFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released low read depth ENCFF177PDI fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF061MAR 2060725748 Michael Snyder, Stanford af86ad9b68ac94849707a8b881faf559 SRA:SRR5112143 https://www.encodeproject.org/files/ENCFF177PDI/@@download/ENCFF177PDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released low read depth ENCFF061MAR fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF177PDI 2127193089 Michael Snyder, Stanford 69b02e62a19deb6c15ce53396dc2ea31 SRA:SRR5112143 https://www.encodeproject.org/files/ENCFF061MAR/@@download/ENCFF061MAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released low read depth ENCFF866PMJ bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF807MUK 3680830088 ENCODE Processing Pipeline 6c577faa9d34df7a78d4d84cf259e426 https://www.encodeproject.org/files/ENCFF866PMJ/@@download/ENCFF866PMJ.bam hg19 released low read depth ENCFF192BTS bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF807MUK 2960123171 ENCODE Processing Pipeline c4d8feebefafc207d4c023b6702fb659 https://www.encodeproject.org/files/ENCFF192BTS/@@download/ENCFF192BTS.bam hg19 released low read depth ENCFF423OWJ bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 1086226608 ENCODE Processing Pipeline c6435352cc95d9335ae0d83dbecb7462 https://www.encodeproject.org/files/ENCFF423OWJ/@@download/ENCFF423OWJ.bigWig hg19 released low read depth ENCFF905FVX bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 1093862927 ENCODE Processing Pipeline 3dd503e1ada54b4e18dbc305df34e530 https://www.encodeproject.org/files/ENCFF905FVX/@@download/ENCFF905FVX.bigWig hg19 released low read depth ENCFF922DYL bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 1600403980 ENCODE Processing Pipeline 16e22b375ba1327b7066b96c09390302 https://www.encodeproject.org/files/ENCFF922DYL/@@download/ENCFF922DYL.bigWig hg19 released low read depth ENCFF885AVM bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 962297444 ENCODE Processing Pipeline 1410bbd660277dc56ab225571af8fdc0 https://www.encodeproject.org/files/ENCFF885AVM/@@download/ENCFF885AVM.bigWig hg19 released low read depth ENCFF024PBR bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 1032534189 ENCODE Processing Pipeline 43ce63b2eb6b0bd5956e54ed2844460c https://www.encodeproject.org/files/ENCFF024PBR/@@download/ENCFF024PBR.bigWig hg19 released low read depth ENCFF896KWL bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 1957541686 ENCODE Processing Pipeline 3fd970811904381b17b471e5da0d8d3c https://www.encodeproject.org/files/ENCFF896KWL/@@download/ENCFF896KWL.bigWig hg19 released low read depth ENCFF543JOD bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 6550363 ENCODE Processing Pipeline 2e1060a6c0a284bd9c73fd3c8370dd29 https://www.encodeproject.org/files/ENCFF543JOD/@@download/ENCFF543JOD.bed.gz hg19 released low read depth ENCFF568AYW bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 6752047 ENCODE Processing Pipeline 6785dfddf0a1eaa0d930cc2f2123e62e https://www.encodeproject.org/files/ENCFF568AYW/@@download/ENCFF568AYW.bed.gz hg19 released low read depth ENCFF350OGU bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 7170799 ENCODE Processing Pipeline 0dc6bf569cf788a92dd40a8b9bbe95ee https://www.encodeproject.org/files/ENCFF350OGU/@@download/ENCFF350OGU.bed.gz hg19 released low read depth ENCFF668GNF bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF543JOD 13322951 ENCODE Processing Pipeline bfd87d67e9496cd7ea8d1d57a8473109 https://www.encodeproject.org/files/ENCFF668GNF/@@download/ENCFF668GNF.bigBed hg19 released low read depth ENCFF742DCO bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF350OGU 13303416 ENCODE Processing Pipeline 33100375f7d11e5df91b2e4f323135fb https://www.encodeproject.org/files/ENCFF742DCO/@@download/ENCFF742DCO.bigBed hg19 released low read depth ENCFF686VWA bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF568AYW 13390695 ENCODE Processing Pipeline 296599bcfcac6842b9dfc69d200da768 https://www.encodeproject.org/files/ENCFF686VWA/@@download/ENCFF686VWA.bigBed hg19 released low read depth ENCFF465CEB bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF643CGH 3685289463 ENCODE Processing Pipeline a17b97c68a535b2e2d71a0e7a05b3efa https://www.encodeproject.org/files/ENCFF465CEB/@@download/ENCFF465CEB.bam GRCh38 released low read depth ENCFF861ZPY bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF643CGH 3602552145 ENCODE Processing Pipeline 89bbad9017798342b1c557b4b4993686 https://www.encodeproject.org/files/ENCFF861ZPY/@@download/ENCFF861ZPY.bam GRCh38 released low read depth ENCFF692TYF bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF643CGH 4543698354 ENCODE Processing Pipeline ce5e80bae381ccb4b0937aff4ba87c74 https://www.encodeproject.org/files/ENCFF692TYF/@@download/ENCFF692TYF.bam GRCh38 released low read depth ENCFF366RSX bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF643CGH 2964004465 ENCODE Processing Pipeline 5d8201c1a5050532f85f6eb918ddbe06 https://www.encodeproject.org/files/ENCFF366RSX/@@download/ENCFF366RSX.bam GRCh38 released low read depth ENCFF559KGT bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 1020847061 ENCODE Processing Pipeline 55ad27f258dd0e668e31029b758d018a https://www.encodeproject.org/files/ENCFF559KGT/@@download/ENCFF559KGT.bigWig GRCh38 released low read depth ENCFF482YAX bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 1041914230 ENCODE Processing Pipeline d1e0296e02ed818f6b87cea187068c41 https://www.encodeproject.org/files/ENCFF482YAX/@@download/ENCFF482YAX.bigWig GRCh38 released low read depth ENCFF349CKG bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 1938819350 ENCODE Processing Pipeline 6d7b6852f44b1f7e254087732373b043 https://www.encodeproject.org/files/ENCFF349CKG/@@download/ENCFF349CKG.bigWig GRCh38 released low read depth ENCFF753XFU bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 968093732 ENCODE Processing Pipeline 039a7f29d913415d3c8e4807d7fbe727 https://www.encodeproject.org/files/ENCFF753XFU/@@download/ENCFF753XFU.bigWig GRCh38 released low read depth ENCFF560LRN bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 1019704653 ENCODE Processing Pipeline d9eb2b0ab5bfbd53d30aa17b90ef31b6 https://www.encodeproject.org/files/ENCFF560LRN/@@download/ENCFF560LRN.bigWig GRCh38 released low read depth ENCFF547HHK bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 1965239414 ENCODE Processing Pipeline a85c89e473195520e16b7451fce92c19 https://www.encodeproject.org/files/ENCFF547HHK/@@download/ENCFF547HHK.bigWig GRCh38 released low read depth ENCFF192KIS bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 6419910 ENCODE Processing Pipeline a28dafea382ebe13c819f17424d2c55f https://www.encodeproject.org/files/ENCFF192KIS/@@download/ENCFF192KIS.bed.gz GRCh38 released low read depth ENCFF836QRB bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 7190092 ENCODE Processing Pipeline 1ac867edf409b9721b741fcb97acb3b7 https://www.encodeproject.org/files/ENCFF836QRB/@@download/ENCFF836QRB.bed.gz GRCh38 released low read depth ENCFF707MEQ bed narrowPeak peaks and background as input for IDR ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 6575281 ENCODE Processing Pipeline ee9247b340bfe5f9505feb848dc83284 https://www.encodeproject.org/files/ENCFF707MEQ/@@download/ENCFF707MEQ.bed.gz GRCh38 released low read depth ENCFF227LFS bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192KIS 13303128 ENCODE Processing Pipeline 8584047e084ce0a46856613b99c1856c https://www.encodeproject.org/files/ENCFF227LFS/@@download/ENCFF227LFS.bigBed GRCh38 released low read depth ENCFF872GRS bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF707MEQ 13328592 ENCODE Processing Pipeline 43a44c867e4099badffb643ecaf84ee6 https://www.encodeproject.org/files/ENCFF872GRS/@@download/ENCFF872GRS.bigBed GRCh38 released low read depth ENCFF548HXK bed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192KIS, ENCFF419RSJ, ENCFF707MEQ, ENCFF836QRB 627440 ENCODE Processing Pipeline acb9d256f2fb68d1f20a42c771ded808 https://www.encodeproject.org/files/ENCFF548HXK/@@download/ENCFF548HXK.bed.gz GRCh38 released low read depth ENCFF639DQA bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF836QRB 13356205 ENCODE Processing Pipeline e3971d68db8b47a4a25b644dd6379ab3 https://www.encodeproject.org/files/ENCFF639DQA/@@download/ENCFF639DQA.bigBed GRCh38 released low read depth ENCFF984XXL bigBed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF548HXK 1279705 ENCODE Processing Pipeline 9fd62694778a749b248b8b36b5c3b18d https://www.encodeproject.org/files/ENCFF984XXL/@@download/ENCFF984XXL.bigBed GRCh38 released low read depth ENCFF552WAH bed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192KIS, ENCFF419RSJ, ENCFF707MEQ, ENCFF836QRB 704964 ENCODE Processing Pipeline 425bf298192d1c79a7554b17c1232b31 https://www.encodeproject.org/files/ENCFF552WAH/@@download/ENCFF552WAH.bed.gz GRCh38 released low read depth ENCFF421BTP bigBed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF552WAH 1405973 ENCODE Processing Pipeline 1d76e6a04bbbb48ce8b9ea9632b01667 https://www.encodeproject.org/files/ENCFF421BTP/@@download/ENCFF421BTP.bigBed GRCh38 released low read depth ENCFF426XYB bed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF350OGU, ENCFF543JOD, ENCFF568AYW 528427 ENCODE Processing Pipeline b8943d616c7785b27445565935cb13fd https://www.encodeproject.org/files/ENCFF426XYB/@@download/ENCFF426XYB.bed.gz hg19 released low read depth ENCFF030LQL bigBed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF426XYB 889796 ENCODE Processing Pipeline 8296c1b258cd6abe002b633328500ac1 https://www.encodeproject.org/files/ENCFF030LQL/@@download/ENCFF030LQL.bigBed hg19 released low read depth ENCFF899JBI bed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF350OGU, ENCFF543JOD, ENCFF568AYW 607627 ENCODE Processing Pipeline 9c5099c43d4fe33f42035269e73fc191 https://www.encodeproject.org/files/ENCFF899JBI/@@download/ENCFF899JBI.bed.gz hg19 released low read depth ENCFF235YRW bigBed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF899JBI 987094 ENCODE Processing Pipeline 330e76d46d3cb5de5ccdde579485666e https://www.encodeproject.org/files/ENCFF235YRW/@@download/ENCFF235YRW.bigBed hg19 released low read depth ENCFF000OFD bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OFJ 772696043 Richard Myers, HAIB 7a783a67ed7aea4391c5140cec7feafb https://www.encodeproject.org/files/ENCFF000OFD/@@download/ENCFF000OFD.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFE bigBed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZC 220909 Richard Myers, HAIB c9806203496a12e12860c7536eb37844 https://www.encodeproject.org/files/ENCFF000OFE/@@download/ENCFF000OFE.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFF bigBed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZD 293416 Richard Myers, HAIB c82737450fb21c2dd936abae594674d1 https://www.encodeproject.org/files/ENCFF000OFF/@@download/ENCFF000OFF.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFG bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OFL 1056207172 Richard Myers, HAIB 0cfa41458350658b99695d66e74f9ba3 https://www.encodeproject.org/files/ENCFF000OFG/@@download/ENCFF000OFG.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFH bigWig raw signal ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 16966639 Richard Myers, HAIB 8c4886c59dd74161b3b27a1a7c3f3b2a https://www.encodeproject.org/files/ENCFF000OFH/@@download/ENCFF000OFH.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OFI bigWig raw signal ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 19629509 Richard Myers, HAIB 235a464cdc48b70604c1b000c5fbd84f https://www.encodeproject.org/files/ENCFF000OFI/@@download/ENCFF000OFI.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OFJ fastq reads ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 751296856 Richard Myers, HAIB e72ca7d9993269eb7f40a3880299f369 https://www.encodeproject.org/files/ENCFF000OFJ/@@download/ENCFF000OFJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFL fastq reads ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1149210667 Richard Myers, HAIB 6cef27519dd36cce61c68876c5434aa6 https://www.encodeproject.org/files/ENCFF000OFL/@@download/ENCFF000OFL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001TZC bed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 99947 Richard Myers, HAIB 9a74ebe941abbbb80e37aa4a109fa516 https://www.encodeproject.org/files/ENCFF001TZC/@@download/ENCFF001TZC.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TZD bed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 143731 Richard Myers, HAIB a5699bcac0887e67d851580227431e93 https://www.encodeproject.org/files/ENCFF001TZD/@@download/ENCFF001TZD.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF987KGX bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF643CGH 928599238 ENCODE Processing Pipeline ce3d6b02d6425a80730823b05685aed6 https://www.encodeproject.org/files/ENCFF987KGX/@@download/ENCFF987KGX.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF988NFK bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF643CGH 370145429 ENCODE Processing Pipeline 51fbb4e7057f1a7f2c9e9d133a890ede https://www.encodeproject.org/files/ENCFF988NFK/@@download/ENCFF988NFK.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF549ZSD bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF643CGH 1317909816 ENCODE Processing Pipeline 4237232bd51385c1289a610e0dd8ccd9 https://www.encodeproject.org/files/ENCFF549ZSD/@@download/ENCFF549ZSD.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF274NWP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF643CGH 494421293 ENCODE Processing Pipeline cbaddc5924c465b299a5240202eda3fc https://www.encodeproject.org/files/ENCFF274NWP/@@download/ENCFF274NWP.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF716XWN bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF807MUK 926597563 ENCODE Processing Pipeline 37896d1113b52d3878431b7f39fd0a30 https://www.encodeproject.org/files/ENCFF716XWN/@@download/ENCFF716XWN.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF941CFE bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF807MUK 367145102 ENCODE Processing Pipeline 33c6f4dd9a1fba2f0af6b08cd389d665 https://www.encodeproject.org/files/ENCFF941CFE/@@download/ENCFF941CFE.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF767IVC bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF807MUK 1316049960 ENCODE Processing Pipeline f12e6fbe1f3ec368b1a9ba0a925d8213 https://www.encodeproject.org/files/ENCFF767IVC/@@download/ENCFF767IVC.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF059RHP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF807MUK 491787371 ENCODE Processing Pipeline 6b527a9b9959e6ba53107a29076f6443 https://www.encodeproject.org/files/ENCFF059RHP/@@download/ENCFF059RHP.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF508BLG bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 384071228 ENCODE Processing Pipeline 42f5f69cef70a07cdf59f2e39d738faa https://www.encodeproject.org/files/ENCFF508BLG/@@download/ENCFF508BLG.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF016EVZ bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 375840392 ENCODE Processing Pipeline 2c0bdbfa69274ab68476964cd725d7b0 https://www.encodeproject.org/files/ENCFF016EVZ/@@download/ENCFF016EVZ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF824ZRN bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 207309401 ENCODE Processing Pipeline 3c5ea5825c0fc8e87fa54563e4ff2740 https://www.encodeproject.org/files/ENCFF824ZRN/@@download/ENCFF824ZRN.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF102YPZ bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 227959702 ENCODE Processing Pipeline f56a4a6ecbf1b3eb4fbc5e2649b7a858 https://www.encodeproject.org/files/ENCFF102YPZ/@@download/ENCFF102YPZ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF943CFP bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 465355495 ENCODE Processing Pipeline aa594fa14949f514999c88a1afd4f6ef https://www.encodeproject.org/files/ENCFF943CFP/@@download/ENCFF943CFP.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF821PRO bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 385137945 ENCODE Processing Pipeline 3f56571162e6ff1c9d190ff1dc0d1518 https://www.encodeproject.org/files/ENCFF821PRO/@@download/ENCFF821PRO.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF153EEZ bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 4120340 ENCODE Processing Pipeline 6b49291e4998d775982002e09d08fc49 https://www.encodeproject.org/files/ENCFF153EEZ/@@download/ENCFF153EEZ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF674UHS bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 3943513 ENCODE Processing Pipeline eae49a1a6ce4fc3c2e46ab2630a598d9 https://www.encodeproject.org/files/ENCFF674UHS/@@download/ENCFF674UHS.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF499YDX bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 4636846 ENCODE Processing Pipeline 5451d6a3eb247952a829d18cfab30ec3 https://www.encodeproject.org/files/ENCFF499YDX/@@download/ENCFF499YDX.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF526AWS bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF153EEZ 8279172 ENCODE Processing Pipeline 7973219511fed11702a67570bfdc7b72 https://www.encodeproject.org/files/ENCFF526AWS/@@download/ENCFF526AWS.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF060KTS bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF674UHS 8092096 ENCODE Processing Pipeline 2f966bfc61e77250da6d696d485fe169 https://www.encodeproject.org/files/ENCFF060KTS/@@download/ENCFF060KTS.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF902XWM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393NBO 337433 ENCODE Processing Pipeline 4350b3de192099efdb702d411e374319 https://www.encodeproject.org/files/ENCFF902XWM/@@download/ENCFF902XWM.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF884JTF bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF499YDX 10852341 ENCODE Processing Pipeline db82c9b0ef565bf50642e3c8924a3d45 https://www.encodeproject.org/files/ENCFF884JTF/@@download/ENCFF884JTF.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF393NBO bed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF153EEZ, ENCFF419RSJ, ENCFF499YDX, ENCFF674UHS 180402 ENCODE Processing Pipeline d6e3ec253234ff66db787119066f20f8 https://www.encodeproject.org/files/ENCFF393NBO/@@download/ENCFF393NBO.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF829SEJ bed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF153EEZ, ENCFF419RSJ, ENCFF499YDX, ENCFF674UHS 218937 ENCODE Processing Pipeline f401739966d623a6f92819b4c260691b https://www.encodeproject.org/files/ENCFF829SEJ/@@download/ENCFF829SEJ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF093MDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF829SEJ 466706 ENCODE Processing Pipeline 5da5df3835bc83b4c91ecf0931a370ac https://www.encodeproject.org/files/ENCFF093MDA/@@download/ENCFF093MDA.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF256CKN bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 458188591 ENCODE Processing Pipeline fc7ee639d09bff2a0b883759d63e8940 https://www.encodeproject.org/files/ENCFF256CKN/@@download/ENCFF256CKN.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF284KVO bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 422410374 ENCODE Processing Pipeline c74b7c08974d570d8678dc447afd7c36 https://www.encodeproject.org/files/ENCFF284KVO/@@download/ENCFF284KVO.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF778UUN bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 206074373 ENCODE Processing Pipeline 1528f0cdad48466e9d27233362cac81c https://www.encodeproject.org/files/ENCFF778UUN/@@download/ENCFF778UUN.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF266EQW bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 465888352 ENCODE Processing Pipeline 64f4a859011b32b240fe40ca54f75c63 https://www.encodeproject.org/files/ENCFF266EQW/@@download/ENCFF266EQW.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF964CXK bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 387561283 ENCODE Processing Pipeline 09a25df97e2abe196e546e54733928e8 https://www.encodeproject.org/files/ENCFF964CXK/@@download/ENCFF964CXK.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF432PTE bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 228501600 ENCODE Processing Pipeline e3735ebb13951ccae7d14b301d49b32b https://www.encodeproject.org/files/ENCFF432PTE/@@download/ENCFF432PTE.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF252ZSU bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 3940300 ENCODE Processing Pipeline b4629a0f7ba60e27d60aa449fb412dbf https://www.encodeproject.org/files/ENCFF252ZSU/@@download/ENCFF252ZSU.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF954YLZ bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF256FUR 8248275 ENCODE Processing Pipeline d1d2169ec4e0f3ac24e8c572fcf6d0fb https://www.encodeproject.org/files/ENCFF954YLZ/@@download/ENCFF954YLZ.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF256FUR bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 4078871 ENCODE Processing Pipeline 81e563b52b45fdedd7c92dcf39ed7fc2 https://www.encodeproject.org/files/ENCFF256FUR/@@download/ENCFF256FUR.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF694IUT bed narrowPeak peaks and background as input for IDR ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 4588688 ENCODE Processing Pipeline 43a131fc68eb4925ed29542c234ec0a8 https://www.encodeproject.org/files/ENCFF694IUT/@@download/ENCFF694IUT.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF318WPF bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF252ZSU 8077989 ENCODE Processing Pipeline 9800f5c363da3721e3adbccd12109513 https://www.encodeproject.org/files/ENCFF318WPF/@@download/ENCFF318WPF.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF579KWB bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF694IUT 10799509 ENCODE Processing Pipeline fba575ef91e91741f8cdfa835a6ddde5 https://www.encodeproject.org/files/ENCFF579KWB/@@download/ENCFF579KWB.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF030NYG bed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252ZSU, ENCFF256FUR, ENCFF694IUT 198820 ENCODE Processing Pipeline bc1bb5c6d32dc9c8b9ce28c46e4b77e4 https://www.encodeproject.org/files/ENCFF030NYG/@@download/ENCFF030NYG.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF927DFX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF030NYG 362819 ENCODE Processing Pipeline f20152027aad92323844ced947a75d60 https://www.encodeproject.org/files/ENCFF927DFX/@@download/ENCFF927DFX.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF017JWE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703TFD 316653 ENCODE Processing Pipeline d31f83d4ce0b953f895b7bc1ae46431f https://www.encodeproject.org/files/ENCFF017JWE/@@download/ENCFF017JWE.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF703TFD bed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252ZSU, ENCFF256FUR, ENCFF694IUT 163460 ENCODE Processing Pipeline 9d9395018df41a7ca1e3141656ff3d8a https://www.encodeproject.org/files/ENCFF703TFD/@@download/ENCFF703TFD.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NSY bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTN 1232438998 Richard Myers, HAIB 0fd1b112d0169fc1c4033ded5277c6c8 https://www.encodeproject.org/files/ENCFF000NSY/@@download/ENCFF000NSY.bam hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NSZ bigBed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWJ 596956 Richard Myers, HAIB 5672e81e76202f615d56c1f126e7378e https://www.encodeproject.org/files/ENCFF000NSZ/@@download/ENCFF000NSZ.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTA bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTL 802177400 Richard Myers, HAIB 7711544e4be8a3eae17fa20e9b9ea37f https://www.encodeproject.org/files/ENCFF000NTA/@@download/ENCFF000NTA.bam hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTB bigBed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWK 221782 Richard Myers, HAIB 0058e56162ef151a6116feba65e60998 https://www.encodeproject.org/files/ENCFF000NTB/@@download/ENCFF000NTB.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTC bigWig raw signal ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 38539521 Richard Myers, HAIB 75078b9d68ce211465647211a50584e9 https://www.encodeproject.org/files/ENCFF000NTC/@@download/ENCFF000NTC.bigWig hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTE bigWig raw signal ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 16910964 Richard Myers, HAIB 3ed63f9d4f0a1b3ef64c8488566725f8 https://www.encodeproject.org/files/ENCFF000NTE/@@download/ENCFF000NTE.bigWig hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTL fastq reads ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 914397894 Richard Myers, HAIB 93bcf708bdd4a287e1b23bedf97bc2a9 https://www.encodeproject.org/files/ENCFF000NTL/@@download/ENCFF000NTL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NTN fastq reads ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1175212931 Richard Myers, HAIB 496c34442931c5cb22f6c94fb3ade59a https://www.encodeproject.org/files/ENCFF000NTN/@@download/ENCFF000NTN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF001TWJ bed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 356710 Richard Myers, HAIB d44e7109ff806385dcf5fe652f154f88 https://www.encodeproject.org/files/ENCFF001TWJ/@@download/ENCFF001TWJ.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF001TWK bed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 116920 Richard Myers, HAIB ce8c00771b95f138b4c803e6f15914ef https://www.encodeproject.org/files/ENCFF001TWK/@@download/ENCFF001TWK.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF002CGS bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 300102 ENCODE Consortium Analysis Working Group 1fa40f4212396dbecc511b3a3a361c40 https://www.encodeproject.org/files/ENCFF002CGS/@@download/ENCFF002CGS.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF651IOE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGS 680572 ENCODE Consortium 6fcc6143017983f97b794d637c5f2cab https://www.encodeproject.org/files/ENCFF651IOE/@@download/ENCFF651IOE.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF563KYU bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF643CGH 988569892 ENCODE Processing Pipeline f13a3dbe74afb41561bfbbeb48b4b05f https://www.encodeproject.org/files/ENCFF563KYU/@@download/ENCFF563KYU.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF488UTP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF643CGH 294183826 ENCODE Processing Pipeline 956fbb715ae034e32517219907b21b33 https://www.encodeproject.org/files/ENCFF488UTP/@@download/ENCFF488UTP.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF227WBP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF643CGH 568731531 ENCODE Processing Pipeline e20f34788a79aa28efaa021ee8846b26 https://www.encodeproject.org/files/ENCFF227WBP/@@download/ENCFF227WBP.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF408CVD bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF643CGH 1440943972 ENCODE Processing Pipeline 9d3461f5b70c2ecb60802cc2ced90025 https://www.encodeproject.org/files/ENCFF408CVD/@@download/ENCFF408CVD.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF511GDC bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF807MUK 1010475457 ENCODE Processing Pipeline 3a6c2c332aa4658fb731fdda23d168af https://www.encodeproject.org/files/ENCFF511GDC/@@download/ENCFF511GDC.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF288XGA bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF807MUK 288418113 ENCODE Processing Pipeline de5cff384c79044d71cf40d3569e9cac https://www.encodeproject.org/files/ENCFF288XGA/@@download/ENCFF288XGA.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF462BJG bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF807MUK 1444156283 ENCODE Processing Pipeline ffa182711f76e3449557e6846c442436 https://www.encodeproject.org/files/ENCFF462BJG/@@download/ENCFF462BJG.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF032GHF bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF807MUK 562707311 ENCODE Processing Pipeline 7eab4857a7a7dfa7117daed7623e4339 https://www.encodeproject.org/files/ENCFF032GHF/@@download/ENCFF032GHF.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF016DLE bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 392189845 ENCODE Processing Pipeline de4f1bd06a3d366717f6035812aafa2c https://www.encodeproject.org/files/ENCFF016DLE/@@download/ENCFF016DLE.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF503JPY bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 359365390 ENCODE Processing Pipeline 10fbef5811b1811a9b59e291d5b1658c https://www.encodeproject.org/files/ENCFF503JPY/@@download/ENCFF503JPY.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF935GIB bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 473249907 ENCODE Processing Pipeline 5f202e70cd1c157c688525cf0cde80a6 https://www.encodeproject.org/files/ENCFF935GIB/@@download/ENCFF935GIB.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF244BKM bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 170212421 ENCODE Processing Pipeline d6366840196097d5e24544d29cb7e7ca https://www.encodeproject.org/files/ENCFF244BKM/@@download/ENCFF244BKM.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF098GAJ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 297207866 ENCODE Processing Pipeline be0ed51957af99409454c1e85ea73fc7 https://www.encodeproject.org/files/ENCFF098GAJ/@@download/ENCFF098GAJ.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF641QFU bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 411510434 ENCODE Processing Pipeline cd0066ef6a8ebd232e239d26bcad7e2d https://www.encodeproject.org/files/ENCFF641QFU/@@download/ENCFF641QFU.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF972GFU bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 2951079 ENCODE Processing Pipeline f1561b6c77dfada4d32e5ff63bd8fd47 https://www.encodeproject.org/files/ENCFF972GFU/@@download/ENCFF972GFU.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF496OFD bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 5198625 ENCODE Processing Pipeline 358c2de132d16c4751cdffefe7d1d3ff https://www.encodeproject.org/files/ENCFF496OFD/@@download/ENCFF496OFD.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF414UGE bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF496OFD 10804944 ENCODE Processing Pipeline cc7b919196e246d3559cf6e537bcb8d2 https://www.encodeproject.org/files/ENCFF414UGE/@@download/ENCFF414UGE.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF500PRU bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF972GFU 6916046 ENCODE Processing Pipeline e1609176e372f9492331713edafb491d https://www.encodeproject.org/files/ENCFF500PRU/@@download/ENCFF500PRU.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF202MSE bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF829IXH 13207639 ENCODE Processing Pipeline 6d0796c4638d22ef24e9f3777704fd02 https://www.encodeproject.org/files/ENCFF202MSE/@@download/ENCFF202MSE.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF829IXH bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 5649000 ENCODE Processing Pipeline 0f8e51cd2a040ec8a7bb888c8035f7ec https://www.encodeproject.org/files/ENCFF829IXH/@@download/ENCFF829IXH.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF516SWI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF372AVL 423790 ENCODE Processing Pipeline 899b1187bb009d1425fad9bc3d5ce877 https://www.encodeproject.org/files/ENCFF516SWI/@@download/ENCFF516SWI.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF247MHT bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF496OFD, ENCFF829IXH, ENCFF972GFU 354886 ENCODE Processing Pipeline f9d7460a309b718a585ea184b29a774d https://www.encodeproject.org/files/ENCFF247MHT/@@download/ENCFF247MHT.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF372AVL bed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF496OFD, ENCFF829IXH, ENCFF972GFU 213774 ENCODE Processing Pipeline b14947d6d493821cb64ab777a73478ae https://www.encodeproject.org/files/ENCFF372AVL/@@download/ENCFF372AVL.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF845RCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF247MHT 750433 ENCODE Processing Pipeline ba36f1e9b093b02dcbe46249db2a522f https://www.encodeproject.org/files/ENCFF845RCE/@@download/ENCFF845RCE.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF841KSW bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 382603089 ENCODE Processing Pipeline 2f86f65279e8d143eeba91df9581436f https://www.encodeproject.org/files/ENCFF841KSW/@@download/ENCFF841KSW.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF401QAO bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 297635972 ENCODE Processing Pipeline a47b13a47916b8c2f93fa79f64ad8629 https://www.encodeproject.org/files/ENCFF401QAO/@@download/ENCFF401QAO.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF100MDQ bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 412010375 ENCODE Processing Pipeline fc417feecd7d36ab470f0780649d590f https://www.encodeproject.org/files/ENCFF100MDQ/@@download/ENCFF100MDQ.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF735HRJ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 171086757 ENCODE Processing Pipeline d8e2e4cd515d50f3ea77e007bf50179c https://www.encodeproject.org/files/ENCFF735HRJ/@@download/ENCFF735HRJ.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF051AFL bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 473738610 ENCODE Processing Pipeline 073713cbc9ec56a4b30d8c6c5d085d3e https://www.encodeproject.org/files/ENCFF051AFL/@@download/ENCFF051AFL.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF366FDQ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 410658922 ENCODE Processing Pipeline ce052fa503bd0cfc5320a75d790eef9d https://www.encodeproject.org/files/ENCFF366FDQ/@@download/ENCFF366FDQ.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF306BBY bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 2985778 ENCODE Processing Pipeline c46c23e747f2bc9a1837549baa2c03be https://www.encodeproject.org/files/ENCFF306BBY/@@download/ENCFF306BBY.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF255RCD bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 5665089 ENCODE Processing Pipeline fbaab1c7d059db1d98d6a8790ac757e4 https://www.encodeproject.org/files/ENCFF255RCD/@@download/ENCFF255RCD.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF017OSU bed narrowPeak peaks and background as input for IDR ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 5216391 ENCODE Processing Pipeline 5746764b38acb3c4e39b1660aad372a7 https://www.encodeproject.org/files/ENCFF017OSU/@@download/ENCFF017OSU.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF228QBI bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255RCD 13214772 ENCODE Processing Pipeline 37102a12d6c1c9235f1a2a92fe72beff https://www.encodeproject.org/files/ENCFF228QBI/@@download/ENCFF228QBI.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF082EYY bed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017OSU, ENCFF255RCD, ENCFF306BBY 204750 ENCODE Processing Pipeline 761995c3b71e1ad89946880b68ee5762 https://www.encodeproject.org/files/ENCFF082EYY/@@download/ENCFF082EYY.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF617HIT bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF017OSU 10826355 ENCODE Processing Pipeline 13002eba792a952a5632c0d4881e3436 https://www.encodeproject.org/files/ENCFF617HIT/@@download/ENCFF617HIT.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF542OHT bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF306BBY 6993825 ENCODE Processing Pipeline 9f3ebe753891f0674a1f2c6e9385087c https://www.encodeproject.org/files/ENCFF542OHT/@@download/ENCFF542OHT.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF625SHY bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017OSU, ENCFF255RCD, ENCFF306BBY 357177 ENCODE Processing Pipeline 27296c76fc5b23b80e229644883fa76d https://www.encodeproject.org/files/ENCFF625SHY/@@download/ENCFF625SHY.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF963QXH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF082EYY 411796 ENCODE Processing Pipeline b055b40fba5bc806bd762c6e1669cf47 https://www.encodeproject.org/files/ENCFF963QXH/@@download/ENCFF963QXH.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF557EXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF625SHY 754126 ENCODE Processing Pipeline a835b6a2e439c574cfed581736526536 https://www.encodeproject.org/files/ENCFF557EXZ/@@download/ENCFF557EXZ.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000NXM bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYB 1793789274 Richard Myers, HAIB 150f127a253c3ae3ae2c79bcb22f97cf https://www.encodeproject.org/files/ENCFF000NXM/@@download/ENCFF000NXM.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXN bigBed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXO 672787 Richard Myers, HAIB acd316aee41780fc3490e501beb67d6d https://www.encodeproject.org/files/ENCFF000NXN/@@download/ENCFF000NXN.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXO bigBed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXP 690892 Richard Myers, HAIB b0f7827d80fdc9f02edf4cea0c80ec86 https://www.encodeproject.org/files/ENCFF000NXO/@@download/ENCFF000NXO.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXP bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NXW 1541117968 Richard Myers, HAIB cd2273241d494c7d85eed3d3bb1ed3f0 https://www.encodeproject.org/files/ENCFF000NXP/@@download/ENCFF000NXP.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXQ bigWig raw signal ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 22069294 Richard Myers, HAIB 588d0af7e5a011d462c60643cc716f57 https://www.encodeproject.org/files/ENCFF000NXQ/@@download/ENCFF000NXQ.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NXR bigWig raw signal ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 20743323 Richard Myers, HAIB e7789cf4a9b3b8a5a892ccb99d51b430 https://www.encodeproject.org/files/ENCFF000NXR/@@download/ENCFF000NXR.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NXW fastq reads ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1537635698 Richard Myers, HAIB c5c0b75d1b400ac5ecf1f31a4a528844 https://www.encodeproject.org/files/ENCFF000NXW/@@download/ENCFF000NXW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NYB fastq reads ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1799863527 Richard Myers, HAIB 12757dc74251a44922d836a50f5ea382 https://www.encodeproject.org/files/ENCFF000NYB/@@download/ENCFF000NYB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TXO bed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 329953 Richard Myers, HAIB 647e9072151aec4f235e617c86835b73 https://www.encodeproject.org/files/ENCFF001TXO/@@download/ENCFF001TXO.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TXP bed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 359974 Richard Myers, HAIB 28e17e60df32b13264ab6d21de9e8b10 https://www.encodeproject.org/files/ENCFF001TXP/@@download/ENCFF001TXP.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHF bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 234700 ENCODE Consortium Analysis Working Group e86ad868e90ad5be56aa38b8f5cd3ab1 https://www.encodeproject.org/files/ENCFF002CHF/@@download/ENCFF002CHF.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF873PNY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHF 533481 ENCODE Consortium ec8f10f55c255466af71f1c29998bdf8 https://www.encodeproject.org/files/ENCFF873PNY/@@download/ENCFF873PNY.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF922QNO bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF643CGH 1670764871 ENCODE Processing Pipeline 444d9209cad2323cc854c2f7648b6141 https://www.encodeproject.org/files/ENCFF922QNO/@@download/ENCFF922QNO.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF983YCI bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF643CGH 1016241355 ENCODE Processing Pipeline 2430c20788da57425b0d39fe6b214da6 https://www.encodeproject.org/files/ENCFF983YCI/@@download/ENCFF983YCI.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF207QTV bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF643CGH 1171354888 ENCODE Processing Pipeline 972d699532b32b05425ab4c48a1393ab https://www.encodeproject.org/files/ENCFF207QTV/@@download/ENCFF207QTV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF414CDS bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF643CGH 1935414200 ENCODE Processing Pipeline 797114f45d8b95db32b87309578ec7dd https://www.encodeproject.org/files/ENCFF414CDS/@@download/ENCFF414CDS.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF224MHM bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF807MUK 1670191507 ENCODE Processing Pipeline 3fda2c8563235a278cb5b9ce9f636311 https://www.encodeproject.org/files/ENCFF224MHM/@@download/ENCFF224MHM.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF214RUL bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF807MUK 1009716777 ENCODE Processing Pipeline 17cc91e4ed261e46815cf9cd818e46b9 https://www.encodeproject.org/files/ENCFF214RUL/@@download/ENCFF214RUL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF991DJH bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF807MUK 1934516312 ENCODE Processing Pipeline f67020b6d8941941893528626e8b9d54 https://www.encodeproject.org/files/ENCFF991DJH/@@download/ENCFF991DJH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF867LOD bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF807MUK 1164055608 ENCODE Processing Pipeline 300ab185e0711db6216286eece31479d https://www.encodeproject.org/files/ENCFF867LOD/@@download/ENCFF867LOD.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF513WJY bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 840000071 ENCODE Processing Pipeline f023e211a21c22574b8301e59d7c0d9a https://www.encodeproject.org/files/ENCFF513WJY/@@download/ENCFF513WJY.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599BQZ bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 649705642 ENCODE Processing Pipeline 3907bd4253beafbd3c1a47186ee84a75 https://www.encodeproject.org/files/ENCFF599BQZ/@@download/ENCFF599BQZ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF255XOJ bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 546590319 ENCODE Processing Pipeline 879afe4a423e4ccb75a73f70509d30b8 https://www.encodeproject.org/files/ENCFF255XOJ/@@download/ENCFF255XOJ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF526YEF bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 598205910 ENCODE Processing Pipeline 90a7430493e037f34e93cd846d13e0e3 https://www.encodeproject.org/files/ENCFF526YEF/@@download/ENCFF526YEF.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF564YOV bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 930211762 ENCODE Processing Pipeline a897b53920cd4c6a97ee35eaa7304fa4 https://www.encodeproject.org/files/ENCFF564YOV/@@download/ENCFF564YOV.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF478YBA bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 6792504 ENCODE Processing Pipeline 63f519c2c22d0909a9d08c187b776da3 https://www.encodeproject.org/files/ENCFF478YBA/@@download/ENCFF478YBA.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF370SOF bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 7127201 ENCODE Processing Pipeline aa9585c6eb71c02edb3287e5ab6abd30 https://www.encodeproject.org/files/ENCFF370SOF/@@download/ENCFF370SOF.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF450EDU bed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF, ENCFF419RSJ, ENCFF478YBA, ENCFF755GLO 238769 ENCODE Processing Pipeline d06509918f86269cddec7c4b00468033 https://www.encodeproject.org/files/ENCFF450EDU/@@download/ENCFF450EDU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF108NRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF138ZBJ 556891 ENCODE Processing Pipeline 7ac64a34d2b55c11668d5e406af6fff3 https://www.encodeproject.org/files/ENCFF108NRH/@@download/ENCFF108NRH.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF025EHI bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 592070421 ENCODE Processing Pipeline 838191504c574c0b86a679d5f85cb520 https://www.encodeproject.org/files/ENCFF025EHI/@@download/ENCFF025EHI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599QSP bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF478YBA 12740099 ENCODE Processing Pipeline 9ef9d61e4b8f206dd9791c5eeacf11b0 https://www.encodeproject.org/files/ENCFF599QSP/@@download/ENCFF599QSP.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF755GLO bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 6873880 ENCODE Processing Pipeline 6aaf1b2667300cde29a940eec5779d2f https://www.encodeproject.org/files/ENCFF755GLO/@@download/ENCFF755GLO.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF703GDL bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF755GLO 12396640 ENCODE Processing Pipeline 84f432bf012df13146cfd2998fc96f51 https://www.encodeproject.org/files/ENCFF703GDL/@@download/ENCFF703GDL.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF126PVU bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF 12444332 ENCODE Processing Pipeline 4568637ecc5577d68407cf073bd98698 https://www.encodeproject.org/files/ENCFF126PVU/@@download/ENCFF126PVU.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF362CDO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF450EDU 503070 ENCODE Processing Pipeline 4018fa8cd5aec1506f1da320229eb864 https://www.encodeproject.org/files/ENCFF362CDO/@@download/ENCFF362CDO.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF138ZBJ bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF, ENCFF419RSJ, ENCFF478YBA, ENCFF755GLO 273181 ENCODE Processing Pipeline 6f202f1275baafd31b76d9db26cebdf0 https://www.encodeproject.org/files/ENCFF138ZBJ/@@download/ENCFF138ZBJ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF958GPJ bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 659222024 ENCODE Processing Pipeline 3cd8f20fc67762855a62b0bb0aa5e3c3 https://www.encodeproject.org/files/ENCFF958GPJ/@@download/ENCFF958GPJ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF161UXI bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 608882653 ENCODE Processing Pipeline 528bd6acdf5a6a4fc59bffe6212abdb1 https://www.encodeproject.org/files/ENCFF161UXI/@@download/ENCFF161UXI.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF838ATU bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 6851894 ENCODE Processing Pipeline 5c5595269451619d2c31fc7ccea14596 https://www.encodeproject.org/files/ENCFF838ATU/@@download/ENCFF838ATU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF912NOF bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 591922419 ENCODE Processing Pipeline d1f295c7716ab7923fa6170dd654acaa https://www.encodeproject.org/files/ENCFF912NOF/@@download/ENCFF912NOF.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF186XBP bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 6878540 ENCODE Processing Pipeline b0f0c9c1d715adb6e51447102a105876 https://www.encodeproject.org/files/ENCFF186XBP/@@download/ENCFF186XBP.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF020JYN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF409QJU 569374 ENCODE Processing Pipeline 00a3bf3407835e79d650aae9152e1463 https://www.encodeproject.org/files/ENCFF020JYN/@@download/ENCFF020JYN.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF700CTW bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 539804378 ENCODE Processing Pipeline a1bbc06685e4e0576e488bccd6a8273a https://www.encodeproject.org/files/ENCFF700CTW/@@download/ENCFF700CTW.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF963CDS bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 919766356 ENCODE Processing Pipeline beaa42f0b87b930a7ea9ed48a27f8319 https://www.encodeproject.org/files/ENCFF963CDS/@@download/ENCFF963CDS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF065IKP bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 834842270 ENCODE Processing Pipeline 348ca79985af98d82a4d7fb56ecbd2fe https://www.encodeproject.org/files/ENCFF065IKP/@@download/ENCFF065IKP.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF948UJN bed narrowPeak peaks and background as input for IDR ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 7132463 ENCODE Processing Pipeline e057f3189951372692545957c14413ee https://www.encodeproject.org/files/ENCFF948UJN/@@download/ENCFF948UJN.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF567DZT bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF838ATU 12814998 ENCODE Processing Pipeline e892e9c5d04d41c1b60a50ef6f599576 https://www.encodeproject.org/files/ENCFF567DZT/@@download/ENCFF567DZT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF714DUT bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF186XBP 12425122 ENCODE Processing Pipeline db18177cd4c8e1c182138e2ca6f23938 https://www.encodeproject.org/files/ENCFF714DUT/@@download/ENCFF714DUT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF742OFT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF359EFT 525913 ENCODE Processing Pipeline 6d11e127d4196de128f01deb5b21d9d5 https://www.encodeproject.org/files/ENCFF742OFT/@@download/ENCFF742OFT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF622HSC bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF948UJN 12492263 ENCODE Processing Pipeline 83e9cb953516d6bbb63dfb196d367d61 https://www.encodeproject.org/files/ENCFF622HSC/@@download/ENCFF622HSC.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF359EFT bed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF186XBP, ENCFF838ATU, ENCFF948UJN 234706 ENCODE Processing Pipeline 73d24d9b9ce1a201a165ea6e36994ebf https://www.encodeproject.org/files/ENCFF359EFT/@@download/ENCFF359EFT.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF409QJU bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF186XBP, ENCFF838ATU, ENCFF948UJN 261869 ENCODE Processing Pipeline 06580d3142d49ee39bae07fed781c8f3 https://www.encodeproject.org/files/ENCFF409QJU/@@download/ENCFF409QJU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NUM bigBed broadPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 ENCFF001TWS 94661 Richard Myers, HAIB ece0537aaeb6fad2c856630b610c6c8a https://www.encodeproject.org/files/ENCFF000NUM/@@download/ENCFF000NUM.bigBed hg19 archived low read length, low read depth ENCFF000NUN bigWig raw signal ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 24402788 Richard Myers, HAIB a4c82c8f1666654f8c17082ba299fa77 https://www.encodeproject.org/files/ENCFF000NUN/@@download/ENCFF000NUN.bigWig hg19 archived low read length, low read depth missing derived_from ENCFF000NUO bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF000NVB 1502945345 Richard Myers, HAIB 46f751378a350a44034c0a79c3c5577a https://www.encodeproject.org/files/ENCFF000NUO/@@download/ENCFF000NUO.bam hg19 archived low read length, low read depth ENCFF000NVB fastq reads ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 36 single-ended 1293018872 Richard Myers, HAIB 2578cb5e97d34448e0dd4e471130dc12 https://www.encodeproject.org/files/ENCFF000NVB/@@download/ENCFF000NVB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released inconsistent control read length, low read length, low read depth ENCFF001TWS bed broadPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 33790 Richard Myers, HAIB 7188e3bd287afd83582b17a77aa402c4 https://www.encodeproject.org/files/ENCFF001TWS/@@download/ENCFF001TWS.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF002CGW bed narrowPeak optimal idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 424286 ENCODE Consortium Analysis Working Group 8cf58cb06c7dc27907e9926a5f293f4b https://www.encodeproject.org/files/ENCFF002CGW/@@download/ENCFF002CGW.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF863RPA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGW 1182745 ENCODE Consortium f31ee7ac9e16998704d82dd63fa5b8d2 https://www.encodeproject.org/files/ENCFF863RPA/@@download/ENCFF863RPA.bigBed hg19 archived low read length, low read depth ENCFF347QCT bam unfiltered alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF643CGH 1459430058 ENCODE Processing Pipeline 6de32910465f6bcf0e67601c8bd05f8f https://www.encodeproject.org/files/ENCFF347QCT/@@download/ENCFF347QCT.bam GRCh38 released low read length, low read depth ENCFF100VNU bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF643CGH 492700527 ENCODE Processing Pipeline 136bdc266af65fa315799ccb4a6d63f0 https://www.encodeproject.org/files/ENCFF100VNU/@@download/ENCFF100VNU.bam GRCh38 released low read length, low read depth ENCFF857OMT bam unfiltered alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF807MUK 1455490626 ENCODE Processing Pipeline 5c6682eb4e379a7fc8db727bdfb87f19 https://www.encodeproject.org/files/ENCFF857OMT/@@download/ENCFF857OMT.bam hg19 released low read length, low read depth ENCFF436AVX bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF807MUK 490876518 ENCODE Processing Pipeline da2c6de8972ecab02e4b3e3d8ee4d559 https://www.encodeproject.org/files/ENCFF436AVX/@@download/ENCFF436AVX.bam hg19 released low read length, low read depth ENCFF287JUG bed narrowPeak peaks and background as input for IDR ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 4634393 ENCODE Processing Pipeline 7d7c1af62eb44f5910ae5aee1824c849 https://www.encodeproject.org/files/ENCFF287JUG/@@download/ENCFF287JUG.bed.gz GRCh38 released low read length, low read depth ENCFF357OHD bigWig fold change over control ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 290950842 ENCODE Processing Pipeline 0be2eef88b9a57613f5d13a70da4334e https://www.encodeproject.org/files/ENCFF357OHD/@@download/ENCFF357OHD.bigWig GRCh38 released low read length, low read depth ENCFF621BPK bigBed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF287JUG 10799751 ENCODE Processing Pipeline 86741f766571713a5cc4327ae47dde51 https://www.encodeproject.org/files/ENCFF621BPK/@@download/ENCFF621BPK.bigBed GRCh38 released low read length, low read depth ENCFF033EGO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF341EJT 139942 ENCODE Processing Pipeline 0a3a781b995bc781c4b02c6b7d98cb70 https://www.encodeproject.org/files/ENCFF033EGO/@@download/ENCFF033EGO.bigBed GRCh38 released low read length, low read depth ENCFF341EJT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF287JUG, ENCFF419RSJ 50082 ENCODE Processing Pipeline 82b3444a27d4545414406b83892b3be5 https://www.encodeproject.org/files/ENCFF341EJT/@@download/ENCFF341EJT.bed.gz GRCh38 released low read length, low read depth ENCFF451FUH bigWig signal p-value ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 478160644 ENCODE Processing Pipeline 7327bc13b58ada25366b352a50c9ef32 https://www.encodeproject.org/files/ENCFF451FUH/@@download/ENCFF451FUH.bigWig GRCh38 released low read length, low read depth ENCFF624CPW bigWig fold change over control ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 295982973 ENCODE Processing Pipeline 52ba13bee0f9e790f2d2152a43b63491 https://www.encodeproject.org/files/ENCFF624CPW/@@download/ENCFF624CPW.bigWig hg19 released low read length, low read depth ENCFF615RBF bigBed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF958SWO 10770230 ENCODE Processing Pipeline d2da3c1bc15bc7141aa0cda486574de4 https://www.encodeproject.org/files/ENCFF615RBF/@@download/ENCFF615RBF.bigBed hg19 released low read length, low read depth ENCFF618EFD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF001TDO, ENCFF958SWO 48934 ENCODE Processing Pipeline 5086b8288dcbb4e9f5152cf6c7338a68 https://www.encodeproject.org/files/ENCFF618EFD/@@download/ENCFF618EFD.bed.gz hg19 released low read length, low read depth ENCFF361MGY bigWig signal p-value ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 408390119 ENCODE Processing Pipeline 291a04d3c5d8c5944af20196047b8ebd https://www.encodeproject.org/files/ENCFF361MGY/@@download/ENCFF361MGY.bigWig hg19 released low read length, low read depth ENCFF656NCQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF618EFD 137957 ENCODE Processing Pipeline 1c568a6e7aed1c6b08730df62596b7c9 https://www.encodeproject.org/files/ENCFF656NCQ/@@download/ENCFF656NCQ.bigBed hg19 released low read length, low read depth ENCFF958SWO bed narrowPeak peaks and background as input for IDR ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 4694893 ENCODE Processing Pipeline aaf0e7309f3fc86723d38df8d2827e8f https://www.encodeproject.org/files/ENCFF958SWO/@@download/ENCFF958SWO.bed.gz hg19 released low read length, low read depth ENCFF618HND fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF467WML 1295172552 Michael Snyder, Stanford 55a3359e7babc2501e2c7e342c8e54da https://www.encodeproject.org/files/ENCFF618HND/@@download/ENCFF618HND.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF502CGN fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF004AXH 1030497725 Michael Snyder, Stanford 811bc8574c23d2f1599d43a4169c3b26 https://www.encodeproject.org/files/ENCFF502CGN/@@download/ENCFF502CGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF004AXH fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF502CGN 1067406339 Michael Snyder, Stanford 0a4874b823d787a7046f3a899d94a8d8 https://www.encodeproject.org/files/ENCFF004AXH/@@download/ENCFF004AXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF467WML fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF618HND 1335056785 Michael Snyder, Stanford 96f4ca0689eb36bc0a32b90be0038350 https://www.encodeproject.org/files/ENCFF467WML/@@download/ENCFF467WML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF755VSZ bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF004AXH, ENCFF502CGN, ENCFF807MUK 1601945573 ENCODE Processing Pipeline 7bbec33cd35d91e635a526af9a514c98 https://www.encodeproject.org/files/ENCFF755VSZ/@@download/ENCFF755VSZ.bam hg19 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF706FSL bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF467WML, ENCFF618HND, ENCFF807MUK 2397152881 ENCODE Processing Pipeline 6c2f82db4a6a62a8e933f0ca427733e0 https://www.encodeproject.org/files/ENCFF706FSL/@@download/ENCFF706FSL.bam hg19 archived moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF317DLF fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF176UXT 4478270480 Michael Snyder, Stanford 93b47f4de242ec1a526204f2f387d3dd https://www.encodeproject.org/files/ENCFF317DLF/@@download/ENCFF317DLF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF989GZO fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF428IIQ 4125016520 Michael Snyder, Stanford 24fe8841951fc76e235ae93e2aab5714 https://www.encodeproject.org/files/ENCFF989GZO/@@download/ENCFF989GZO.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF176UXT fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF317DLF 4213714419 Michael Snyder, Stanford 85ac3380b3daf2c4ef75021b68485eb2 https://www.encodeproject.org/files/ENCFF176UXT/@@download/ENCFF176UXT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF428IIQ fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF989GZO 3678205402 Michael Snyder, Stanford 44e8ad1f760c697bdd019fa815f2e2a4 https://www.encodeproject.org/files/ENCFF428IIQ/@@download/ENCFF428IIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF024LRR bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF643CGH, ENCFF989GZO 6506315507 ENCODE Processing Pipeline 4e6e4b3d5eb97f9e1d92da6116a89291 https://www.encodeproject.org/files/ENCFF024LRR/@@download/ENCFF024LRR.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF353RRA bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF643CGH 7667783222 ENCODE Processing Pipeline 036408601f260019aa039e794bed97cf https://www.encodeproject.org/files/ENCFF353RRA/@@download/ENCFF353RRA.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF599RWY bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF643CGH, ENCFF989GZO 2968560715 ENCODE Processing Pipeline 91d34e573dab4baa1b612e4bb23e12ca https://www.encodeproject.org/files/ENCFF599RWY/@@download/ENCFF599RWY.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF034ZKO bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF643CGH 5267549051 ENCODE Processing Pipeline f5e03dfacb1ca23332076d803b12be3e https://www.encodeproject.org/files/ENCFF034ZKO/@@download/ENCFF034ZKO.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF256XBG bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 7202208 ENCODE Processing Pipeline b9f43f01f4eadb8a089e455f4498ed54 https://www.encodeproject.org/files/ENCFF256XBG/@@download/ENCFF256XBG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF240ANF bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 2265934456 ENCODE Processing Pipeline c9a09eb0a9388d7fdd36ce2d2d1e5ba9 https://www.encodeproject.org/files/ENCFF240ANF/@@download/ENCFF240ANF.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF214RFI bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 1115259030 ENCODE Processing Pipeline ef1291ecd55faa4c916e096233cf58b4 https://www.encodeproject.org/files/ENCFF214RFI/@@download/ENCFF214RFI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF198WFH bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 7323353 ENCODE Processing Pipeline 8ce03b703a02b8ed28c9b7a7ab46b4d6 https://www.encodeproject.org/files/ENCFF198WFH/@@download/ENCFF198WFH.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF156NPR bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH 13139263 ENCODE Processing Pipeline e95481c0b7c426ba563921149cf93d34 https://www.encodeproject.org/files/ENCFF156NPR/@@download/ENCFF156NPR.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF704PDA bed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH, ENCFF256XBG, ENCFF419RSJ, ENCFF796ASI 463767 ENCODE Processing Pipeline 203f019614051d47155587ef8322e995 https://www.encodeproject.org/files/ENCFF704PDA/@@download/ENCFF704PDA.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF241TZA bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 958203089 ENCODE Processing Pipeline 59903197a8711cd090d586f5275351c3 https://www.encodeproject.org/files/ENCFF241TZA/@@download/ENCFF241TZA.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF796ASI bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 6559379 ENCODE Processing Pipeline a885122091145f32555be19e5a823d7f https://www.encodeproject.org/files/ENCFF796ASI/@@download/ENCFF796ASI.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF729NDS bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF256XBG 13094171 ENCODE Processing Pipeline 203f2efa9dafe34bbec69488d8282aa1 https://www.encodeproject.org/files/ENCFF729NDS/@@download/ENCFF729NDS.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF033AFW bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 1903356764 ENCODE Processing Pipeline 6c20d618a9a0e5103a3e1820d436f064 https://www.encodeproject.org/files/ENCFF033AFW/@@download/ENCFF033AFW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF795PWZ bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 2032483892 ENCODE Processing Pipeline bbb9513c77eda2b1777cfb7274c8deb5 https://www.encodeproject.org/files/ENCFF795PWZ/@@download/ENCFF795PWZ.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF724KWV bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 2381088283 ENCODE Processing Pipeline 9d5c97ce40f43a12e9511ba0d979ada4 https://www.encodeproject.org/files/ENCFF724KWV/@@download/ENCFF724KWV.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF254RSV bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF796ASI 13415288 ENCODE Processing Pipeline 269454f472f8f38cb812f18912105af1 https://www.encodeproject.org/files/ENCFF254RSV/@@download/ENCFF254RSV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF120YFV bigBed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF704PDA 903507 ENCODE Processing Pipeline 4eaf190f50e0e0ae1688fed4e74858be https://www.encodeproject.org/files/ENCFF120YFV/@@download/ENCFF120YFV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF899PKC bed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH, ENCFF256XBG, ENCFF419RSJ, ENCFF796ASI 355907 ENCODE Processing Pipeline 82cdb1d5f50b3e9a35350ffed2288624 https://www.encodeproject.org/files/ENCFF899PKC/@@download/ENCFF899PKC.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF159CHP bigBed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF899PKC 734655 ENCODE Processing Pipeline 4c8869b1fc86ffc7b8bb7fa06eb33e0a https://www.encodeproject.org/files/ENCFF159CHP/@@download/ENCFF159CHP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF334IYA bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF807MUK, ENCFF989GZO 6514442524 ENCODE Processing Pipeline b74ef2a4e1f8927458eed06e8f663d14 https://www.encodeproject.org/files/ENCFF334IYA/@@download/ENCFF334IYA.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF375JDH bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF807MUK, ENCFF989GZO 2962023548 ENCODE Processing Pipeline 95a2adb885636432d5e549520d317af7 https://www.encodeproject.org/files/ENCFF375JDH/@@download/ENCFF375JDH.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF254KPP bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF807MUK 7672180119 ENCODE Processing Pipeline 50898c86e8cdde687988bca8c85d9c5e https://www.encodeproject.org/files/ENCFF254KPP/@@download/ENCFF254KPP.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF302UOS bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF807MUK 5251977183 ENCODE Processing Pipeline b00a37bff2d975811ff3735c4ae9142e https://www.encodeproject.org/files/ENCFF302UOS/@@download/ENCFF302UOS.bam hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF863ATI bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 1059584007 ENCODE Processing Pipeline 066819d187055a1a4d49603d98c7e627 https://www.encodeproject.org/files/ENCFF863ATI/@@download/ENCFF863ATI.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF144UVB bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 1715761852 ENCODE Processing Pipeline dd2ab8bf29b82d84f08bd3d97dea1880 https://www.encodeproject.org/files/ENCFF144UVB/@@download/ENCFF144UVB.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF137UAI bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 2330253655 ENCODE Processing Pipeline edee522e75648eb803b8655666fb892c https://www.encodeproject.org/files/ENCFF137UAI/@@download/ENCFF137UAI.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF549TIS bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 7284670 ENCODE Processing Pipeline 32dfce15e6348f87b69dbdd172bae9d4 https://www.encodeproject.org/files/ENCFF549TIS/@@download/ENCFF549TIS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF165YUB bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF452APP 13131124 ENCODE Processing Pipeline ee8cb0c7f70412af12d6f425e58426b9 https://www.encodeproject.org/files/ENCFF165YUB/@@download/ENCFF165YUB.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF960NVP bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF549TIS 13100430 ENCODE Processing Pipeline 37572772ef0e8a093a8603763a31d5fb https://www.encodeproject.org/files/ENCFF960NVP/@@download/ENCFF960NVP.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF704ZYN bed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF452APP, ENCFF473OII, ENCFF549TIS 449441 ENCODE Processing Pipeline d57b85ace159f8e7ba3cdff45e9b3338 https://www.encodeproject.org/files/ENCFF704ZYN/@@download/ENCFF704ZYN.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF994NSB bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 2048266537 ENCODE Processing Pipeline 76817db5d64550a56f17f612e2804c6e https://www.encodeproject.org/files/ENCFF994NSB/@@download/ENCFF994NSB.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF799JAS bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 2360893001 ENCODE Processing Pipeline 2c2eef0839c101aca91b70c3f473d826 https://www.encodeproject.org/files/ENCFF799JAS/@@download/ENCFF799JAS.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF473OII bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 6546459 ENCODE Processing Pipeline 9ed939dcb5162b559ebec59f2374d1f5 https://www.encodeproject.org/files/ENCFF473OII/@@download/ENCFF473OII.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF663YUR bigBed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF704ZYN 888285 ENCODE Processing Pipeline ed61e89ce417fe229bf27831b70963e8 https://www.encodeproject.org/files/ENCFF663YUR/@@download/ENCFF663YUR.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF879RZD bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 1116342851 ENCODE Processing Pipeline 7e0e1e6c83875365b8e935e7471805bf https://www.encodeproject.org/files/ENCFF879RZD/@@download/ENCFF879RZD.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF452APP bed narrowPeak peaks and background as input for IDR ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 7232348 ENCODE Processing Pipeline d8e765c46ac02fdee078d67da3163340 https://www.encodeproject.org/files/ENCFF452APP/@@download/ENCFF452APP.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF301RNU bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF473OII 13389868 ENCODE Processing Pipeline 0bbed4fcebfac0013e60611c3cba1151 https://www.encodeproject.org/files/ENCFF301RNU/@@download/ENCFF301RNU.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF498BHJ bed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF452APP, ENCFF473OII, ENCFF549TIS 343248 ENCODE Processing Pipeline e72ec75f976367450202a7cc88b94f56 https://www.encodeproject.org/files/ENCFF498BHJ/@@download/ENCFF498BHJ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF450FQN bigBed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF498BHJ 719152 ENCODE Processing Pipeline 18d07b946bfe384d2d0dfd92aeb8592f https://www.encodeproject.org/files/ENCFF450FQN/@@download/ENCFF450FQN.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF673WUM bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF807MUK, ENCFF887YKT 5065533648 ENCODE Processing Pipeline 9fe90fdb052cd9e40da0344eb617fdf2 https://www.encodeproject.org/files/ENCFF673WUM/@@download/ENCFF673WUM.bam hg19 released ENCFF659OTN bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF807MUK 5595013330 ENCODE Processing Pipeline 3bc31c70f62a7eecbb4a7947d1111ef2 https://www.encodeproject.org/files/ENCFF659OTN/@@download/ENCFF659OTN.bam hg19 released ENCFF481LLT fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF887YKT 2286535847 Michael Snyder, Stanford a5be7a6274020ca3e70fd86c6cc24ddd SRA:SRR5111562 https://www.encodeproject.org/files/ENCFF481LLT/@@download/ENCFF481LLT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF887YKT fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF481LLT 2355884652 Michael Snyder, Stanford 54718c62062077810a4464ed770ca98b SRA:SRR5111562 https://www.encodeproject.org/files/ENCFF887YKT/@@download/ENCFF887YKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF176ERK fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF178JHO 2542619691 Michael Snyder, Stanford 676aa9eb6cb53a56a278007d33df25cf SRA:SRR5111563 https://www.encodeproject.org/files/ENCFF176ERK/@@download/ENCFF176ERK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released ENCFF178JHO fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF176ERK 2602493478 Michael Snyder, Stanford 9825820f929d22a767ed1503895f8c33 SRA:SRR5111563 https://www.encodeproject.org/files/ENCFF178JHO/@@download/ENCFF178JHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released ENCFF241VLD bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF807MUK, ENCFF887YKT 4250594376 ENCODE Processing Pipeline 448a7fe3846c8cad35e5b19f4716bae7 https://www.encodeproject.org/files/ENCFF241VLD/@@download/ENCFF241VLD.bam hg19 released ENCFF219QMR bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF807MUK 4763958384 ENCODE Processing Pipeline e038f88a302588e8425a1b83a564f6dd https://www.encodeproject.org/files/ENCFF219QMR/@@download/ENCFF219QMR.bam hg19 released ENCFF741PFS bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 1309757418 ENCODE Processing Pipeline 85427ca96a4d0b54ac8e3d6cac21e74f https://www.encodeproject.org/files/ENCFF741PFS/@@download/ENCFF741PFS.bigWig hg19 released ENCFF603BJN bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 1215667184 ENCODE Processing Pipeline 9ed414349a72da94009bf2853fb6f031 https://www.encodeproject.org/files/ENCFF603BJN/@@download/ENCFF603BJN.bigWig hg19 released ENCFF527OUG bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 1161499223 ENCODE Processing Pipeline b6be3b3dcf1cb4a5c768a8f5638cd4c8 https://www.encodeproject.org/files/ENCFF527OUG/@@download/ENCFF527OUG.bigWig hg19 released ENCFF189TGX bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 1245356197 ENCODE Processing Pipeline c8ea02ccbdadc2465ced31f231a4357e https://www.encodeproject.org/files/ENCFF189TGX/@@download/ENCFF189TGX.bigWig hg19 released ENCFF959CLS bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF643CGH, ENCFF887YKT 5067679118 ENCODE Processing Pipeline 354f3182c0ac543a786743a5424069be https://www.encodeproject.org/files/ENCFF959CLS/@@download/ENCFF959CLS.bam GRCh38 released ENCFF376FCT bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF643CGH 5598055848 ENCODE Processing Pipeline 1d6e3b4ae652a4d35c8e9d3f72d52cc7 https://www.encodeproject.org/files/ENCFF376FCT/@@download/ENCFF376FCT.bam GRCh38 released ENCFF902XGC bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF643CGH, ENCFF887YKT 4256979678 ENCODE Processing Pipeline f67747517d6f42a2c7684911d11fec8c https://www.encodeproject.org/files/ENCFF902XGC/@@download/ENCFF902XGC.bam GRCh38 released ENCFF141RIS bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF643CGH 4770654583 ENCODE Processing Pipeline 663dd105ef75f6e200e6322456a8fd50 https://www.encodeproject.org/files/ENCFF141RIS/@@download/ENCFF141RIS.bam GRCh38 released ENCFF835VKP bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 1197066651 ENCODE Processing Pipeline c272d887f0f8f919ea2fa0b3ce136f71 https://www.encodeproject.org/files/ENCFF835VKP/@@download/ENCFF835VKP.bigWig GRCh38 released ENCFF895JTZ bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 1162535290 ENCODE Processing Pipeline 8fdaa24b79a7f1fb348a97f049368fda https://www.encodeproject.org/files/ENCFF895JTZ/@@download/ENCFF895JTZ.bigWig GRCh38 released ENCFF886SUT bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 2129900393 ENCODE Processing Pipeline f371640b5b4bc01771bceca0aa5aaaef https://www.encodeproject.org/files/ENCFF886SUT/@@download/ENCFF886SUT.bigWig GRCh38 released ENCFF081ICT bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 1200311305 ENCODE Processing Pipeline 82ffdda4b2a8e7ef31710eb6955edaae https://www.encodeproject.org/files/ENCFF081ICT/@@download/ENCFF081ICT.bigWig GRCh38 released ENCFF780ORG bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 1236517989 ENCODE Processing Pipeline 5c0aac7a0a79b183f5ea30237e45cce0 https://www.encodeproject.org/files/ENCFF780ORG/@@download/ENCFF780ORG.bigWig GRCh38 released ENCFF732KHL bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 2207695423 ENCODE Processing Pipeline be48f0f66a2326c01d2baef4e7f8cb6a https://www.encodeproject.org/files/ENCFF732KHL/@@download/ENCFF732KHL.bigWig GRCh38 released ENCFF090PCO bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 6842357 ENCODE Processing Pipeline db70c224be61501d5d2fe4b9e82e87b2 https://www.encodeproject.org/files/ENCFF090PCO/@@download/ENCFF090PCO.bed.gz GRCh38 released ENCFF944LIM bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 6820393 ENCODE Processing Pipeline ea4d6042a7d138a0800fe2c36e602b35 https://www.encodeproject.org/files/ENCFF944LIM/@@download/ENCFF944LIM.bed.gz GRCh38 released ENCFF246SCF bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 7206810 ENCODE Processing Pipeline 0306eccf1ba36f0300317614459b3a6a https://www.encodeproject.org/files/ENCFF246SCF/@@download/ENCFF246SCF.bed.gz GRCh38 released ENCFF986VFB bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF090PCO 13260732 ENCODE Processing Pipeline 06d0cff180bf3c7aca632ef14a3a8089 https://www.encodeproject.org/files/ENCFF986VFB/@@download/ENCFF986VFB.bigBed GRCh38 released ENCFF687RQO bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF246SCF 13042841 ENCODE Processing Pipeline 5891135ae9d0b1fe6c0137c3cc14292b https://www.encodeproject.org/files/ENCFF687RQO/@@download/ENCFF687RQO.bigBed GRCh38 released ENCFF194FLW bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF944LIM 13269060 ENCODE Processing Pipeline 2d8a55c9b99b7d7fa89876d4003c0fe0 https://www.encodeproject.org/files/ENCFF194FLW/@@download/ENCFF194FLW.bigBed GRCh38 released ENCFF147EGK bed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF090PCO, ENCFF246SCF, ENCFF419RSJ, ENCFF944LIM 319675 ENCODE Processing Pipeline 8d63b8517a41f9685288669e07092d17 https://www.encodeproject.org/files/ENCFF147EGK/@@download/ENCFF147EGK.bed.gz GRCh38 released ENCFF248DQO bigBed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF147EGK 704951 ENCODE Processing Pipeline 5f33db37bc77825158d898baeb09426f https://www.encodeproject.org/files/ENCFF248DQO/@@download/ENCFF248DQO.bigBed GRCh38 released ENCFF668JHK bed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF090PCO, ENCFF246SCF, ENCFF419RSJ, ENCFF944LIM 441018 ENCODE Processing Pipeline 357792f03430372cc4eced2589050baf https://www.encodeproject.org/files/ENCFF668JHK/@@download/ENCFF668JHK.bed.gz GRCh38 released ENCFF002NFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF668JHK 896851 ENCODE Processing Pipeline 6a321679e948eeba8f6488f00fe454b8 https://www.encodeproject.org/files/ENCFF002NFQ/@@download/ENCFF002NFQ.bigBed GRCh38 released ENCFF547XIO bigBed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF360OXD 705810 ENCODE Processing Pipeline 89f5d8af0900ad7535fdf2aa99ed006f https://www.encodeproject.org/files/ENCFF547XIO/@@download/ENCFF547XIO.bigBed hg19 released ENCFF870JLC bigBed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF733UTZ 889479 ENCODE Processing Pipeline 223ebf74a97a4568017920eaacd89ebb https://www.encodeproject.org/files/ENCFF870JLC/@@download/ENCFF870JLC.bigBed hg19 released ENCFF267YYC bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF354CAT 13257975 ENCODE Processing Pipeline 421b0b8244867907d98744f616fb54a0 https://www.encodeproject.org/files/ENCFF267YYC/@@download/ENCFF267YYC.bigBed hg19 released ENCFF863XZK bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 1938152352 ENCODE Processing Pipeline 1e1db4fef5e0f89841a64665a34a9609 https://www.encodeproject.org/files/ENCFF863XZK/@@download/ENCFF863XZK.bigWig hg19 released ENCFF016QUV bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 6786003 ENCODE Processing Pipeline d41e5e922682d5852cd74c44b53512b4 https://www.encodeproject.org/files/ENCFF016QUV/@@download/ENCFF016QUV.bed.gz hg19 released ENCFF354CAT bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 6812560 ENCODE Processing Pipeline 8cd8dfcc8fd28ef2364d87ca60b3c47f https://www.encodeproject.org/files/ENCFF354CAT/@@download/ENCFF354CAT.bed.gz hg19 released ENCFF187SWR bed narrowPeak peaks and background as input for IDR ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 7224516 ENCODE Processing Pipeline bffe8eb2e4eebca69e20ce01a0f805b9 https://www.encodeproject.org/files/ENCFF187SWR/@@download/ENCFF187SWR.bed.gz hg19 released ENCFF902CEB bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF187SWR 13056918 ENCODE Processing Pipeline 139b9dce53091d70b34e00d0cc244a05 https://www.encodeproject.org/files/ENCFF902CEB/@@download/ENCFF902CEB.bigBed hg19 released ENCFF360OXD bed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF016QUV, ENCFF187SWR, ENCFF354CAT 322109 ENCODE Processing Pipeline 2cf74eb6c77b5825a3ba1553d2be39bf https://www.encodeproject.org/files/ENCFF360OXD/@@download/ENCFF360OXD.bed.gz hg19 released ENCFF672QUT bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF016QUV 13204410 ENCODE Processing Pipeline f21c7cde80ad3a3219494a4eb80e8cf4 https://www.encodeproject.org/files/ENCFF672QUT/@@download/ENCFF672QUT.bigBed hg19 released ENCFF733UTZ bed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF016QUV, ENCFF187SWR, ENCFF354CAT 438542 ENCODE Processing Pipeline 857832d61646de57b072948b6b33b410 https://www.encodeproject.org/files/ENCFF733UTZ/@@download/ENCFF733UTZ.bed.gz hg19 released ENCFF833JIA bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 2214720653 ENCODE Processing Pipeline 5f9093d191d66f93e27fa72519077c14 https://www.encodeproject.org/files/ENCFF833JIA/@@download/ENCFF833JIA.bigWig hg19 released ENCFF398MUP bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF807MUK 1435766476 ENCODE Processing Pipeline a4ad57c1ae47331c0fd4b6a3d6e0c232 https://www.encodeproject.org/files/ENCFF398MUP/@@download/ENCFF398MUP.bam hg19 released antibody characterized with exemption, low read depth ENCFF219DUV bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF807MUK 1660693832 ENCODE Processing Pipeline f8a168354c096c987b8d4fdc9c616bdb https://www.encodeproject.org/files/ENCFF219DUV/@@download/ENCFF219DUV.bam hg19 released antibody characterized with exemption, low read depth ENCFF324QQE fastq reads ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1368984243 Richard Myers, HAIB 59792415893ff8582b26bb5c000f213e SRA:SRR5331417 https://www.encodeproject.org/files/ENCFF324QQE/@@download/ENCFF324QQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF598SBH/ released antibody characterized with exemption, low read depth ENCFF188ZWJ fastq reads ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1579236809 Richard Myers, HAIB 25572ee0d8eaf426b361d167a316eedd SRA:SRR5331416 https://www.encodeproject.org/files/ENCFF188ZWJ/@@download/ENCFF188ZWJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF381XXA/ released antibody characterized with exemption, low read depth ENCFF262KHM bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF807MUK 1033909070 ENCODE Processing Pipeline e03bd99038584a1d067d42071b11741d https://www.encodeproject.org/files/ENCFF262KHM/@@download/ENCFF262KHM.bam hg19 released antibody characterized with exemption, low read depth ENCFF437VCI bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF807MUK 1203001510 ENCODE Processing Pipeline 444dad331cc493aa1a3a0e1a0f91737c https://www.encodeproject.org/files/ENCFF437VCI/@@download/ENCFF437VCI.bam hg19 released antibody characterized with exemption, low read depth ENCFF592UEL bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 670826993 ENCODE Processing Pipeline 2366b2f7185baf6efe170fd672a40d7f https://www.encodeproject.org/files/ENCFF592UEL/@@download/ENCFF592UEL.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF254LCG bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 6925793 ENCODE Processing Pipeline 343b8c3847fd115c7e315e73b8dc2201 https://www.encodeproject.org/files/ENCFF254LCG/@@download/ENCFF254LCG.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF122XQS bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 1200944935 ENCODE Processing Pipeline 00492247b014270ea333d3eeffdf5ce6 https://www.encodeproject.org/files/ENCFF122XQS/@@download/ENCFF122XQS.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF281NZH bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 592925890 ENCODE Processing Pipeline 031b9f36ad67aca4863d88ee53be4d0a https://www.encodeproject.org/files/ENCFF281NZH/@@download/ENCFF281NZH.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF561DWH bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 553671488 ENCODE Processing Pipeline 5a7b841af5e122598bafcd67d77a1021 https://www.encodeproject.org/files/ENCFF561DWH/@@download/ENCFF561DWH.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF382LFK bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF050FWJ 12723242 ENCODE Processing Pipeline 9a621834d07a78058f4a2ee484e91e91 https://www.encodeproject.org/files/ENCFF382LFK/@@download/ENCFF382LFK.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF021JVO bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 509959307 ENCODE Processing Pipeline 14fde8f2b7f032a1d95e04a05cb99f2c https://www.encodeproject.org/files/ENCFF021JVO/@@download/ENCFF021JVO.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF758PJS bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 1183468014 ENCODE Processing Pipeline 59d04092d4348d357b5058546285149d https://www.encodeproject.org/files/ENCFF758PJS/@@download/ENCFF758PJS.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF327ANX bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 6627642 ENCODE Processing Pipeline 8c9308a316f7f6ca9e4a33067b11c5d4 https://www.encodeproject.org/files/ENCFF327ANX/@@download/ENCFF327ANX.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF050FWJ bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 6409186 ENCODE Processing Pipeline d3f612216c91518b7a870c5b288a9ed3 https://www.encodeproject.org/files/ENCFF050FWJ/@@download/ENCFF050FWJ.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF687JGN bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF254LCG 12707723 ENCODE Processing Pipeline 887aeed2ef07017fc92a73da83b87b8e https://www.encodeproject.org/files/ENCFF687JGN/@@download/ENCFF687JGN.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF348IKJ bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF327ANX 12890934 ENCODE Processing Pipeline be0ee6d377e54c77aad416f8e36c5d91 https://www.encodeproject.org/files/ENCFF348IKJ/@@download/ENCFF348IKJ.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF483IJC bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF643CGH 1438216426 ENCODE Processing Pipeline 4544d9a5952fcad26cb161dba2b806eb https://www.encodeproject.org/files/ENCFF483IJC/@@download/ENCFF483IJC.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF032UFJ bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF643CGH 1663220697 ENCODE Processing Pipeline 94e465d07f76eb0fb87744c3cf130a98 https://www.encodeproject.org/files/ENCFF032UFJ/@@download/ENCFF032UFJ.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF632KTY bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF643CGH 1039319879 ENCODE Processing Pipeline 8ba08834748a981866d8fd1b389e2ed0 https://www.encodeproject.org/files/ENCFF632KTY/@@download/ENCFF632KTY.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF408KYB bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF643CGH 1210215277 ENCODE Processing Pipeline c8ed829dcadde3725535e6c19657feb4 https://www.encodeproject.org/files/ENCFF408KYB/@@download/ENCFF408KYB.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF655QWY bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 650399752 ENCODE Processing Pipeline b4a9578bb2fb8398a13a7cc77374c0fd https://www.encodeproject.org/files/ENCFF655QWY/@@download/ENCFF655QWY.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF292EDC bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 612569184 ENCODE Processing Pipeline cce07ac86f74c533c7d8417d452a4758 https://www.encodeproject.org/files/ENCFF292EDC/@@download/ENCFF292EDC.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF526JAB bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 1198924408 ENCODE Processing Pipeline 0a9cf2686adc9abe7938c15b685b495c https://www.encodeproject.org/files/ENCFF526JAB/@@download/ENCFF526JAB.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF764GUD bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 559705424 ENCODE Processing Pipeline f3bf61622f75e509169c2829dfdbe090 https://www.encodeproject.org/files/ENCFF764GUD/@@download/ENCFF764GUD.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF478ISK bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 509506344 ENCODE Processing Pipeline a5fd0c55d180c186f9c5b9270eb11eb5 https://www.encodeproject.org/files/ENCFF478ISK/@@download/ENCFF478ISK.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF713ZGU bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 6588530 ENCODE Processing Pipeline b27185cb8bc47dada2d68de6e0d3dba9 https://www.encodeproject.org/files/ENCFF713ZGU/@@download/ENCFF713ZGU.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF699ETX bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 1176082338 ENCODE Processing Pipeline 446afd2a91e683d78aece20aef8e7ce2 https://www.encodeproject.org/files/ENCFF699ETX/@@download/ENCFF699ETX.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF221YFP bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF713ZGU 13012775 ENCODE Processing Pipeline 8f35d280732151360b1c3daa6b1d3c15 https://www.encodeproject.org/files/ENCFF221YFP/@@download/ENCFF221YFP.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF004DIE bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 6366300 ENCODE Processing Pipeline 2ad5422fa09d5e3bf068dca3f2b55b4a https://www.encodeproject.org/files/ENCFF004DIE/@@download/ENCFF004DIE.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF279XTW bed narrowPeak peaks and background as input for IDR ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 7006492 ENCODE Processing Pipeline 5c548a85e832864a1a7ab399ba553db1 https://www.encodeproject.org/files/ENCFF279XTW/@@download/ENCFF279XTW.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF797ETP bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF004DIE 12839326 ENCODE Processing Pipeline 017cb956b981b0aceb82eac3dae44f68 https://www.encodeproject.org/files/ENCFF797ETP/@@download/ENCFF797ETP.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF041QPS bed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF004DIE, ENCFF279XTW, ENCFF419RSJ, ENCFF713ZGU 614257 ENCODE Processing Pipeline 0f7f2866fd405d5172f47aba70a37460 https://www.encodeproject.org/files/ENCFF041QPS/@@download/ENCFF041QPS.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF838EFI bigBed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF041QPS 1150876 ENCODE Processing Pipeline 31dc462bdc5345be5200afed9b437068 https://www.encodeproject.org/files/ENCFF838EFI/@@download/ENCFF838EFI.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF311PMS bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF279XTW 12850995 ENCODE Processing Pipeline 5398a9b5bdb3207a222ba5b3f868338b https://www.encodeproject.org/files/ENCFF311PMS/@@download/ENCFF311PMS.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF023ALY bed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF004DIE, ENCFF279XTW, ENCFF419RSJ, ENCFF713ZGU 663372 ENCODE Processing Pipeline 134887a21367574f6941b653ad5a6301 https://www.encodeproject.org/files/ENCFF023ALY/@@download/ENCFF023ALY.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF239KVL bigBed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF023ALY 1220598 ENCODE Processing Pipeline f8f79893a38cfe21f666f83eb5e34de4 https://www.encodeproject.org/files/ENCFF239KVL/@@download/ENCFF239KVL.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF393KDR bed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF050FWJ, ENCFF254LCG, ENCFF327ANX 557790 ENCODE Processing Pipeline 47c0e8c63a412e4f81edf836f9099541 https://www.encodeproject.org/files/ENCFF393KDR/@@download/ENCFF393KDR.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF841AWG bigBed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF393KDR 1077028 ENCODE Processing Pipeline 6aaf05056c1fa2173c9228ba25922412 https://www.encodeproject.org/files/ENCFF841AWG/@@download/ENCFF841AWG.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF242VUO bed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF050FWJ, ENCFF254LCG, ENCFF327ANX 592515 ENCODE Processing Pipeline ffafc1a8641763eab50f8a610d2a523f https://www.encodeproject.org/files/ENCFF242VUO/@@download/ENCFF242VUO.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF191FEN bigBed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF242VUO 1125429 ENCODE Processing Pipeline c4847c04244f4feddda4609feb54669b https://www.encodeproject.org/files/ENCFF191FEN/@@download/ENCFF191FEN.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF000ROE bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROK 465349895 Vishwanath Iyer, UTA 8ce078f811af718f44a34c2146a3858f https://www.encodeproject.org/files/ENCFF000ROE/@@download/ENCFF000ROE.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROF bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROS 522944565 Vishwanath Iyer, UTA 7b15fc2ea3fddb719626d68569432a22 https://www.encodeproject.org/files/ENCFF000ROF/@@download/ENCFF000ROF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROG bigWig base overlap signal ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 143345354 Vishwanath Iyer, UTA c541180cfc5e956ad595e8ed9ce3d777 https://www.encodeproject.org/files/ENCFF000ROG/@@download/ENCFF000ROG.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROH bigBed narrowPeak peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USG 656684 Vishwanath Iyer, UTA 353a51b84d010566c15861b1f4aa6904 https://www.encodeproject.org/files/ENCFF000ROH/@@download/ENCFF000ROH.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROJ bigWig signal ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 3322009487 Vishwanath Iyer, UTA 4aaf1ff788c2e45d2c7a067e8f9a3c6b https://www.encodeproject.org/files/ENCFF000ROJ/@@download/ENCFF000ROJ.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROK fastq reads ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 480071475 Vishwanath Iyer, UTA c1de271c9500a813ceb21d13419894f2 https://www.encodeproject.org/files/ENCFF000ROK/@@download/ENCFF000ROK.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROL tar validation ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 50441435 Vishwanath Iyer, UTA 764998ed632d7689fa67ef10536ce880 https://www.encodeproject.org/files/ENCFF000ROL/@@download/ENCFF000ROL.tar.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROS fastq reads ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 667216564 Vishwanath Iyer, UTA 833ff9e94d7e1f32da61fe3670ac117e https://www.encodeproject.org/files/ENCFF000ROS/@@download/ENCFF000ROS.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001USG bed narrowPeak peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 381755 Vishwanath Iyer, UTA 06cbc50b630d710ae406dfce63ec642e https://www.encodeproject.org/files/ENCFF001USG/@@download/ENCFF001USG.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DAI bed narrowPeak optimal idr thresholded peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 89590 ENCODE Consortium Analysis Working Group 6520b2bab2bb01aa3703ef80e352b4c0 https://www.encodeproject.org/files/ENCFF002DAI/@@download/ENCFF002DAI.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF453AHV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAI 279716 ENCODE Consortium 3623b793e580af8453a55267a4c5b855 https://www.encodeproject.org/files/ENCFF453AHV/@@download/ENCFF453AHV.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF026HDJ bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF807MUK 6909279434 ENCODE Processing Pipeline 089ae8edacc3fe5b14516e4462d40cff https://www.encodeproject.org/files/ENCFF026HDJ/@@download/ENCFF026HDJ.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF616WSS fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 2 ENCFF246DIP 3323876691 Michael Snyder, Stanford ad6fcc5a605abc786693425351c1f378 SRA:SRR5112300 https://www.encodeproject.org/files/ENCFF616WSS/@@download/ENCFF616WSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking mismatched file status ENCFF246DIP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 1 ENCFF616WSS 3237799633 Michael Snyder, Stanford 3d88191afecaf9c7320798fe6297bf94 SRA:SRR5112300 https://www.encodeproject.org/files/ENCFF246DIP/@@download/ENCFF246DIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking mismatched file status ENCFF960TNP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF640CBP 2609862548 Michael Snyder, Stanford bfcbdc80080af70cee6bf7101c67b1b0 SRA:SRR5112299 https://www.encodeproject.org/files/ENCFF960TNP/@@download/ENCFF960TNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking mismatched file status ENCFF640CBP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF960TNP 2729428269 Michael Snyder, Stanford 987bf22c45279959c61795766f1a2e30 SRA:SRR5112299 https://www.encodeproject.org/files/ENCFF640CBP/@@download/ENCFF640CBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking mismatched file status ENCFF360QES bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF807MUK, ENCFF960TNP 4506516425 ENCODE Processing Pipeline da6b65a21e1f899cc48bf9bf8cf8390d https://www.encodeproject.org/files/ENCFF360QES/@@download/ENCFF360QES.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF769NOS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF807MUK 5613697645 ENCODE Processing Pipeline 4f839c5cb982c5a4d863e574d8a309eb https://www.encodeproject.org/files/ENCFF769NOS/@@download/ENCFF769NOS.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF701IVE bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF643CGH, ENCFF960TNP 5586737242 ENCODE Processing Pipeline b30eb9df398876a1ab44c76a07bcef95 https://www.encodeproject.org/files/ENCFF701IVE/@@download/ENCFF701IVE.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF285XVW bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF643CGH 6878044936 ENCODE Processing Pipeline 3a1c4b731c1ca966e0a4d28ae56b3c2f https://www.encodeproject.org/files/ENCFF285XVW/@@download/ENCFF285XVW.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF640XZS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF643CGH, ENCFF960TNP 4536875532 ENCODE Processing Pipeline 07771f1a5eee26aa9a47dbb006383762 https://www.encodeproject.org/files/ENCFF640XZS/@@download/ENCFF640XZS.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF943EGP bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF643CGH 5699059937 ENCODE Processing Pipeline 4f902e020fd48df020d89fd9fe990618 https://www.encodeproject.org/files/ENCFF943EGP/@@download/ENCFF943EGP.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF769SWM bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 1109634250 ENCODE Processing Pipeline 85b47d7e033f053fa7ea22f4b892ead7 https://www.encodeproject.org/files/ENCFF769SWM/@@download/ENCFF769SWM.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF045QNU bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 1234861153 ENCODE Processing Pipeline a72f97bc149082f6bfd7f388f851b109 https://www.encodeproject.org/files/ENCFF045QNU/@@download/ENCFF045QNU.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF108EBY bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 1760586570 ENCODE Processing Pipeline 34c8a525b98a8f1f3dbbdfb5963a1b05 https://www.encodeproject.org/files/ENCFF108EBY/@@download/ENCFF108EBY.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF146JBQ bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 1132888632 ENCODE Processing Pipeline 2208f62db623588099cead8a26b56303 https://www.encodeproject.org/files/ENCFF146JBQ/@@download/ENCFF146JBQ.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF076BBM bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 1429418479 ENCODE Processing Pipeline 9a36ae5e3f51e9cf0aaef0bb2fcce6bf https://www.encodeproject.org/files/ENCFF076BBM/@@download/ENCFF076BBM.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF232VFZ bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 2288646706 ENCODE Processing Pipeline 9fb90351fdab8937f6940ab72090e37b https://www.encodeproject.org/files/ENCFF232VFZ/@@download/ENCFF232VFZ.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF667GBN bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 6734108 ENCODE Processing Pipeline e5d5b0ebfad004435f83298795c69031 https://www.encodeproject.org/files/ENCFF667GBN/@@download/ENCFF667GBN.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF772FDS bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 7240872 ENCODE Processing Pipeline c5a03e875c5f83fdd1118b4499ec33ce https://www.encodeproject.org/files/ENCFF772FDS/@@download/ENCFF772FDS.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF025KAP bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF667GBN 13522886 ENCODE Processing Pipeline 127b5eb3e284abe55f3298fb904399d0 https://www.encodeproject.org/files/ENCFF025KAP/@@download/ENCFF025KAP.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF816SMQ bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF772FDS 13354710 ENCODE Processing Pipeline 207d58e6c29836529f9581b902212315 https://www.encodeproject.org/files/ENCFF816SMQ/@@download/ENCFF816SMQ.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF029UJN bigBed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF921MFR 906816 ENCODE Processing Pipeline fd650d7fd71c725f3872e94ba2a37db9 https://www.encodeproject.org/files/ENCFF029UJN/@@download/ENCFF029UJN.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF706KJG bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 6713508 ENCODE Processing Pipeline 8ab1a06a34c87c9b6964ada0ef7d5528 https://www.encodeproject.org/files/ENCFF706KJG/@@download/ENCFF706KJG.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF653NEL bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF706KJG 13257343 ENCODE Processing Pipeline 875667f4ca29352b975e6ac7e90c1ba6 https://www.encodeproject.org/files/ENCFF653NEL/@@download/ENCFF653NEL.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF921MFR bed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF419RSJ, ENCFF667GBN, ENCFF706KJG, ENCFF772FDS 428582 ENCODE Processing Pipeline 6e4173c64e6f75955338a92a8d36a1ee https://www.encodeproject.org/files/ENCFF921MFR/@@download/ENCFF921MFR.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF153TQR bed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF419RSJ, ENCFF667GBN, ENCFF706KJG, ENCFF772FDS 571266 ENCODE Processing Pipeline 902ba5264dc796ba50eaba65c703de3c https://www.encodeproject.org/files/ENCFF153TQR/@@download/ENCFF153TQR.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF260SXC bigBed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF153TQR 1095728 ENCODE Processing Pipeline 0a76e541db8d5e216952b214ae4cd252 https://www.encodeproject.org/files/ENCFF260SXC/@@download/ENCFF260SXC.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF599BPE bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 1918992667 ENCODE Processing Pipeline 9346b40a446a3f0e92dbeaeabd0b0c36 https://www.encodeproject.org/files/ENCFF599BPE/@@download/ENCFF599BPE.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF291UWH bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 1145348078 ENCODE Processing Pipeline 6cca6edf94f8f28925959aaa3ae1b8db https://www.encodeproject.org/files/ENCFF291UWH/@@download/ENCFF291UWH.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF098LKI bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 1084663556 ENCODE Processing Pipeline 9242e340825e6e631900c9b9b00a305f https://www.encodeproject.org/files/ENCFF098LKI/@@download/ENCFF098LKI.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF200NLK bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 1509509841 ENCODE Processing Pipeline 6523da7b39f6cd6375afdd6b2146f3ec https://www.encodeproject.org/files/ENCFF200NLK/@@download/ENCFF200NLK.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF383LHA bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 1412764494 ENCODE Processing Pipeline e18268eaef4b28b834c9e1502344d315 https://www.encodeproject.org/files/ENCFF383LHA/@@download/ENCFF383LHA.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF454HNA bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 2293883740 ENCODE Processing Pipeline e5076418983cae82911c7cbcfc0dfe40 https://www.encodeproject.org/files/ENCFF454HNA/@@download/ENCFF454HNA.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF249ALV bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF114HTB 13381302 ENCODE Processing Pipeline 6038f6fe91a01cbb53a61cc8238d7d3a https://www.encodeproject.org/files/ENCFF249ALV/@@download/ENCFF249ALV.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF834XJD bigBed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF369JYP 910288 ENCODE Processing Pipeline 58e359a02f8df0da1618d9ddbbcbc154 https://www.encodeproject.org/files/ENCFF834XJD/@@download/ENCFF834XJD.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF114HTB bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 6696848 ENCODE Processing Pipeline d0ffab3876170b7ea169e10020ebe9dd https://www.encodeproject.org/files/ENCFF114HTB/@@download/ENCFF114HTB.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF405WZX bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 7230884 ENCODE Processing Pipeline ab0c59b74c82a808bcbdfcb16c80755a https://www.encodeproject.org/files/ENCFF405WZX/@@download/ENCFF405WZX.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF611MEN bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF648GNP 13460339 ENCODE Processing Pipeline 321209feb1bf9ce4085f51dc9c4a26ec https://www.encodeproject.org/files/ENCFF611MEN/@@download/ENCFF611MEN.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF369JYP bed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF001TDO, ENCFF114HTB, ENCFF405WZX, ENCFF648GNP 425605 ENCODE Processing Pipeline b940dcf0357a3e2c23b04b0f709bff55 https://www.encodeproject.org/files/ENCFF369JYP/@@download/ENCFF369JYP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF648GNP bed narrowPeak peaks and background as input for IDR ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 6703968 ENCODE Processing Pipeline aeace92b89e06d209a022e199914e5ce https://www.encodeproject.org/files/ENCFF648GNP/@@download/ENCFF648GNP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF066NBV bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF405WZX 13400506 ENCODE Processing Pipeline bbfd4d400b4cd5824df759c7c39c8678 https://www.encodeproject.org/files/ENCFF066NBV/@@download/ENCFF066NBV.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF637PDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF544NXC 1139703 ENCODE Processing Pipeline 47f7aaea9f1832d8b708c0a83dcdd96a https://www.encodeproject.org/files/ENCFF637PDQ/@@download/ENCFF637PDQ.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF544NXC bed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF001TDO, ENCFF114HTB, ENCFF405WZX, ENCFF648GNP 570474 ENCODE Processing Pipeline b1e487a875b568f4b5945bd06240fbe7 https://www.encodeproject.org/files/ENCFF544NXC/@@download/ENCFF544NXC.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF000WHH bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WHR 1351936733 Kevin Struhl, HMS 0e33b8b92068290ab88689b3702129c2 https://www.encodeproject.org/files/ENCFF000WHH/@@download/ENCFF000WHH.bam hg19 archived low read depth biological replicates with identical biosample insufficient read length ENCFF000WHI bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFV 130523 Kevin Struhl, HMS 0177300aaaf1a286e8ea784bd622ecb1 https://www.encodeproject.org/files/ENCFF000WHI/@@download/ENCFF000WHI.bigBed hg19 archived low read depth biological replicates with identical biosample insufficient read length ENCFF000WHJ bigWig signal ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 450466430 Kevin Struhl, HMS 5594b2b337842b4b37638e808f3e1906 https://www.encodeproject.org/files/ENCFF000WHJ/@@download/ENCFF000WHJ.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WHK bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WHO 1204191262 Kevin Struhl, HMS a2cf93be89430d0b6b5315077529c3c4 https://www.encodeproject.org/files/ENCFF000WHK/@@download/ENCFF000WHK.bam hg19 archived low read depth biological replicates with identical biosample insufficient read length ENCFF000WHO fastq reads ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 932846131 Kevin Struhl, HMS 4a6a0d6cea1c5117a6202bb59061c882 https://www.encodeproject.org/files/ENCFF000WHO/@@download/ENCFF000WHO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read depth biological replicates with identical biosample insufficient read length ENCFF000WHR fastq reads ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1071601835 Kevin Struhl, HMS 5ce2f8caa19edbebe64c3cdbdf636c7f https://www.encodeproject.org/files/ENCFF000WHR/@@download/ENCFF000WHR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read depth biological replicates with identical biosample insufficient read length ENCFF001VFV bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 18105 Kevin Struhl, HMS a8e0edae1edc927c22e0b994f237ca9f https://www.encodeproject.org/files/ENCFF001VFV/@@download/ENCFF001VFV.bed.gz hg19 archived low read depth missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CPY bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 20659 ENCODE Consortium Analysis Working Group ad7ed1123e1ab6fe0617cc27f0cc7b59 https://www.encodeproject.org/files/ENCFF002CPY/@@download/ENCFF002CPY.bed.gz hg19 archived low read depth missing derived_from, biological replicates with identical biosample insufficient read length ENCFF805KPI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPY 136587 ENCODE Consortium 820fa9b2a5753265ae73716904e72810 https://www.encodeproject.org/files/ENCFF805KPI/@@download/ENCFF805KPI.bigBed hg19 archived low read depth biological replicates with identical biosample insufficient read length ENCFF272UWD bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF643CGH 572610554 ENCODE Processing Pipeline 3296a45599f30ad495054e3e9708180e https://www.encodeproject.org/files/ENCFF272UWD/@@download/ENCFF272UWD.bam GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF038NOW bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF643CGH 1095254330 ENCODE Processing Pipeline 195d846fe5a8c58f9efff606d8bc5c7c https://www.encodeproject.org/files/ENCFF038NOW/@@download/ENCFF038NOW.bam GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF240HQW bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF643CGH 624669308 ENCODE Processing Pipeline d4cd200bf679a11c0836ffe96120f520 https://www.encodeproject.org/files/ENCFF240HQW/@@download/ENCFF240HQW.bam GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF369TPH bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF643CGH 1234279032 ENCODE Processing Pipeline 15ec1f2f5bf28e10ef8e9d88042d7da8 https://www.encodeproject.org/files/ENCFF369TPH/@@download/ENCFF369TPH.bam GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF380FAI bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF807MUK 1228994646 ENCODE Processing Pipeline 7dd264e3d437ceaacde2720570837624 https://www.encodeproject.org/files/ENCFF380FAI/@@download/ENCFF380FAI.bam hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF540GCE bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF807MUK 1090615461 ENCODE Processing Pipeline 4a97104a8022e8c4f367b92ac4024d0d https://www.encodeproject.org/files/ENCFF540GCE/@@download/ENCFF540GCE.bam hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF661CVS bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF807MUK 572890189 ENCODE Processing Pipeline d5e3547bebb544ee976b11013a1e95b3 https://www.encodeproject.org/files/ENCFF661CVS/@@download/ENCFF661CVS.bam hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF159LJP bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF807MUK 625030008 ENCODE Processing Pipeline 1610db70f776b8b73786fe6a1cff48a9 https://www.encodeproject.org/files/ENCFF159LJP/@@download/ENCFF159LJP.bam hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF833VKG bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 3538496 ENCODE Processing Pipeline 403f4af056e826f159402b5e36b35478 https://www.encodeproject.org/files/ENCFF833VKG/@@download/ENCFF833VKG.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF908NXJ bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 3903969 ENCODE Processing Pipeline 40737260b206a8ba4643f967b5725b31 https://www.encodeproject.org/files/ENCFF908NXJ/@@download/ENCFF908NXJ.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF985UPO bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF833VKG 7579107 ENCODE Processing Pipeline 08a34cd195105188b29baf404e242816 https://www.encodeproject.org/files/ENCFF985UPO/@@download/ENCFF985UPO.bigBed hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF318EJD bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF063ECO 7696243 ENCODE Processing Pipeline 932664974473b79754de1c6c263f32cf https://www.encodeproject.org/files/ENCFF318EJD/@@download/ENCFF318EJD.bigBed hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF208KWW bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 212783675 ENCODE Processing Pipeline c4c04366363926d617688fda69e55945 https://www.encodeproject.org/files/ENCFF208KWW/@@download/ENCFF208KWW.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF582DLT bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 241102728 ENCODE Processing Pipeline 2f22f3843f9ddc31d1e9f5ee8c76af49 https://www.encodeproject.org/files/ENCFF582DLT/@@download/ENCFF582DLT.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF499NNE bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 224573354 ENCODE Processing Pipeline e795b373329689ea0b46df9b8135066d https://www.encodeproject.org/files/ENCFF499NNE/@@download/ENCFF499NNE.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF971DNG bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 423398982 ENCODE Processing Pipeline 2feb4426212d016320915da9aa7fb604 https://www.encodeproject.org/files/ENCFF971DNG/@@download/ENCFF971DNG.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF063ECO bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 3547313 ENCODE Processing Pipeline c74221405b0d14a76020741da11f2479 https://www.encodeproject.org/files/ENCFF063ECO/@@download/ENCFF063ECO.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF096KKH bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 207700620 ENCODE Processing Pipeline f29717a5472c5b3b71d57f450fb63259 https://www.encodeproject.org/files/ENCFF096KKH/@@download/ENCFF096KKH.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF078ONC bed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ECO, ENCFF833VKG, ENCFF908NXJ 10345 ENCODE Processing Pipeline 7221cdfc247691d7e19ff5ad92c93081 https://www.encodeproject.org/files/ENCFF078ONC/@@download/ENCFF078ONC.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF330IDY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF183SZO 61955 ENCODE Processing Pipeline e4af08c5ebb868c908662925644bdc5c https://www.encodeproject.org/files/ENCFF330IDY/@@download/ENCFF330IDY.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF941ELU bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 193093413 ENCODE Processing Pipeline be8b7a0c3e97dc95036ecbe5a580eac3 https://www.encodeproject.org/files/ENCFF941ELU/@@download/ENCFF941ELU.bigWig hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF105CNQ bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF908NXJ 10502863 ENCODE Processing Pipeline 766f77f77d2cd439c21122fe0adc0b36 https://www.encodeproject.org/files/ENCFF105CNQ/@@download/ENCFF105CNQ.bigBed hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF310XJC bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ECO, ENCFF833VKG, ENCFF908NXJ 11888 ENCODE Processing Pipeline c74d3fcbe69e36a64d3a973909d60c6a https://www.encodeproject.org/files/ENCFF310XJC/@@download/ENCFF310XJC.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF021PNT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF310XJC 64261 ENCODE Processing Pipeline 4822a426cb446016312c726fe64fa931 https://www.encodeproject.org/files/ENCFF021PNT/@@download/ENCFF021PNT.bigBed hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF239YGF bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 187145955 ENCODE Processing Pipeline 204526721d6e66d8db296023de094ec4 https://www.encodeproject.org/files/ENCFF239YGF/@@download/ENCFF239YGF.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF891ODT bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 221579378 ENCODE Processing Pipeline dc0558d7598b2dd1a886a1f318fd959f https://www.encodeproject.org/files/ENCFF891ODT/@@download/ENCFF891ODT.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF636KMF bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 413580535 ENCODE Processing Pipeline 27e8defd381ef4ff76338491dfed61ff https://www.encodeproject.org/files/ENCFF636KMF/@@download/ENCFF636KMF.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF030QRQ bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 3537183 ENCODE Processing Pipeline f54e9cb285fa34504aa85aa2cd5bc471 https://www.encodeproject.org/files/ENCFF030QRQ/@@download/ENCFF030QRQ.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF050KOG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078ONC 61232 ENCODE Processing Pipeline c50af2aa6fd369f9786f631863b1dae8 https://www.encodeproject.org/files/ENCFF050KOG/@@download/ENCFF050KOG.bigBed hg19 released low read depth biological replicates with identical biosample insufficient read length ENCFF889XRD bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 3930496 ENCODE Processing Pipeline e978b3837542ed08331d7a3e2e5109f5 https://www.encodeproject.org/files/ENCFF889XRD/@@download/ENCFF889XRD.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF607HZF bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF880REY 7164695 ENCODE Processing Pipeline 63e9775428e37897a761092f071c6a2d https://www.encodeproject.org/files/ENCFF607HZF/@@download/ENCFF607HZF.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF708JPB bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF889XRD 10547752 ENCODE Processing Pipeline c35ca661081cd88939762c2f037a436d https://www.encodeproject.org/files/ENCFF708JPB/@@download/ENCFF708JPB.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF183SZO bed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030QRQ, ENCFF419RSJ, ENCFF880REY, ENCFF889XRD 10291 ENCODE Processing Pipeline c6a753841ab3f6f0eda365034756ac4a https://www.encodeproject.org/files/ENCFF183SZO/@@download/ENCFF183SZO.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF411WEH bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 214957699 ENCODE Processing Pipeline 3731e11ba224b897260cdfcda7c104f2 https://www.encodeproject.org/files/ENCFF411WEH/@@download/ENCFF411WEH.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF410ZQR bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 239317718 ENCODE Processing Pipeline de6e6eabb8ef51fbb901f69c872aca43 https://www.encodeproject.org/files/ENCFF410ZQR/@@download/ENCFF410ZQR.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF880REY bed narrowPeak peaks and background as input for IDR ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 3356728 ENCODE Processing Pipeline 06023081fc4b19e3ffcfc24763fa6bba https://www.encodeproject.org/files/ENCFF880REY/@@download/ENCFF880REY.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF260NAX bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030QRQ, ENCFF419RSJ, ENCFF880REY, ENCFF889XRD 11477 ENCODE Processing Pipeline e432f5a3292c81551792774293d98693 https://www.encodeproject.org/files/ENCFF260NAX/@@download/ENCFF260NAX.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF597ADN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF260NAX 63988 ENCODE Processing Pipeline ed2a4d99d5682745f20e40ed0c118f8d https://www.encodeproject.org/files/ENCFF597ADN/@@download/ENCFF597ADN.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF475CHB bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 207504000 ENCODE Processing Pipeline 9acebee473baab34ce44d26adfaff8dc https://www.encodeproject.org/files/ENCFF475CHB/@@download/ENCFF475CHB.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF358JMR bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF030QRQ 7586139 ENCODE Processing Pipeline c5e10bebe9c339126daa0ff973dae67f https://www.encodeproject.org/files/ENCFF358JMR/@@download/ENCFF358JMR.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient read length ENCFF000WCZ bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000WDC 501361292 Michael Snyder, Stanford 0b54e0bcb68446a33b6ed31fecf7c045 https://www.encodeproject.org/files/ENCFF000WCZ/@@download/ENCFF000WCZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WDA bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000WDE 610604228 Michael Snyder, Stanford 37316deaf6d0948b64f1281654bccc1c https://www.encodeproject.org/files/ENCFF000WDA/@@download/ENCFF000WDA.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WDB bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VFG 962421 Michael Snyder, Stanford a68da802fda559a719c95ced117010d2 https://www.encodeproject.org/files/ENCFF000WDB/@@download/ENCFF000WDB.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WDC fastq reads ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 831852828 Michael Snyder, Stanford c2e852cd62f94d67cb817c95366fcba7 https://www.encodeproject.org/files/ENCFF000WDC/@@download/ENCFF000WDC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000WDE fastq reads ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1100259290 Michael Snyder, Stanford 72797d79e586d8b86708b5d3738e6c45 https://www.encodeproject.org/files/ENCFF000WDE/@@download/ENCFF000WDE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF000WDG bigWig signal ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 183362824 Michael Snyder, Stanford 774b2dd55a0258e5552d1b6f078b770b https://www.encodeproject.org/files/ENCFF000WDG/@@download/ENCFF000WDG.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VFG bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 349869 Michael Snyder, Stanford f2b0296023a545c898e691fc6a117336 https://www.encodeproject.org/files/ENCFF001VFG/@@download/ENCFF001VFG.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CPM bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 272860 ENCODE Consortium Analysis Working Group 9a2d2ac67ccbd57c24a484a18ffba9dd https://www.encodeproject.org/files/ENCFF002CPM/@@download/ENCFF002CPM.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF658RBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPM 702972 ENCODE Consortium bb242488089831c8dac310e1c2ade1f6 https://www.encodeproject.org/files/ENCFF658RBP/@@download/ENCFF658RBP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF260YKP bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF643CGH 873313762 ENCODE Processing Pipeline a3a96edc12fa1f49b1b046f216f6b12e https://www.encodeproject.org/files/ENCFF260YKP/@@download/ENCFF260YKP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF760XFV bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF643CGH 1121474807 ENCODE Processing Pipeline 15865333f194ca2c0d015a44ac38a8f3 https://www.encodeproject.org/files/ENCFF760XFV/@@download/ENCFF760XFV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF952XKW bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF643CGH 574489125 ENCODE Processing Pipeline 4c2b13e73e74f24a2738a0d0e3931ec9 https://www.encodeproject.org/files/ENCFF952XKW/@@download/ENCFF952XKW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF884HCB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF643CGH 721550730 ENCODE Processing Pipeline ed93c8e4445becfb6b3d0ec679f36b2b https://www.encodeproject.org/files/ENCFF884HCB/@@download/ENCFF884HCB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF980MUI bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF807MUK 869579005 ENCODE Processing Pipeline 7dfaf0f5987813c0a4fcdc710edfd1dd https://www.encodeproject.org/files/ENCFF980MUI/@@download/ENCFF980MUI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF610LIO bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF807MUK 1117008738 ENCODE Processing Pipeline f5e804e37dfa3fad56120c2c431b9ea2 https://www.encodeproject.org/files/ENCFF610LIO/@@download/ENCFF610LIO.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF372ODE bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF807MUK 574433201 ENCODE Processing Pipeline d5160e5929e52bedd074eb726fcd31f9 https://www.encodeproject.org/files/ENCFF372ODE/@@download/ENCFF372ODE.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF299WJB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF807MUK 721801861 ENCODE Processing Pipeline 51e3ae0d00482db6a58c53e2114fb717 https://www.encodeproject.org/files/ENCFF299WJB/@@download/ENCFF299WJB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF871CLE bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 74962641 ENCODE Processing Pipeline b540cc7eb5815cd6fa12d5494c9642bd https://www.encodeproject.org/files/ENCFF871CLE/@@download/ENCFF871CLE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF219RMT bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 167672109 ENCODE Processing Pipeline 1eba6606e6f87be89c1e64d867a895cc https://www.encodeproject.org/files/ENCFF219RMT/@@download/ENCFF219RMT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF677WUN bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 248780163 ENCODE Processing Pipeline 0f250049e5e77c61bb45591c4b0e6589 https://www.encodeproject.org/files/ENCFF677WUN/@@download/ENCFF677WUN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF747GCR bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 486619363 ENCODE Processing Pipeline 2e2350c454f2ea6c0c84dc76db08070f https://www.encodeproject.org/files/ENCFF747GCR/@@download/ENCFF747GCR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF787ANE bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 252657908 ENCODE Processing Pipeline d8c5324224733e1cc2c1d6f39ca1422d https://www.encodeproject.org/files/ENCFF787ANE/@@download/ENCFF787ANE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF604JBA bed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF352QMZ, ENCFF441TSO, ENCFF692VTI 253097 ENCODE Processing Pipeline b21234e67aa21c0142e9f753ca0b3c39 https://www.encodeproject.org/files/ENCFF604JBA/@@download/ENCFF604JBA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF305IXP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF778DJD 655908 ENCODE Processing Pipeline c2cfeab7532194040ef0c050a7a02cd0 https://www.encodeproject.org/files/ENCFF305IXP/@@download/ENCFF305IXP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF692VTI bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 4414224 ENCODE Processing Pipeline c25d5385f6861ecaa2f17068e46a38a9 https://www.encodeproject.org/files/ENCFF692VTI/@@download/ENCFF692VTI.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441TSO bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 5165368 ENCODE Processing Pipeline 4ce9da46df75eb3fe4853243dcff4208 https://www.encodeproject.org/files/ENCFF441TSO/@@download/ENCFF441TSO.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF806NVZ bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 167564100 ENCODE Processing Pipeline 539a337353d137d2fbe6b881de9c712b https://www.encodeproject.org/files/ENCFF806NVZ/@@download/ENCFF806NVZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF352QMZ bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 4478096 ENCODE Processing Pipeline 74d91e5d18cd136d4493185a7010994f https://www.encodeproject.org/files/ENCFF352QMZ/@@download/ENCFF352QMZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF502CIU bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352QMZ 10473312 ENCODE Processing Pipeline 13a14c64a306a1ae221cac890cdb6bcb https://www.encodeproject.org/files/ENCFF502CIU/@@download/ENCFF502CIU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF580QAA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF604JBA 613437 ENCODE Processing Pipeline ce16c5daf5c7fedf43d691f5a7db38e6 https://www.encodeproject.org/files/ENCFF580QAA/@@download/ENCFF580QAA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF915BKR bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF692VTI 10293859 ENCODE Processing Pipeline 5b6f5d8d2d6ce363372305d56ea8acf1 https://www.encodeproject.org/files/ENCFF915BKR/@@download/ENCFF915BKR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF679DRS bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF441TSO 13098777 ENCODE Processing Pipeline 93bf2a556cbcab781979a1a7ad6ae90c https://www.encodeproject.org/files/ENCFF679DRS/@@download/ENCFF679DRS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF778DJD bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF352QMZ, ENCFF441TSO, ENCFF692VTI 273669 ENCODE Processing Pipeline 838d5be06c1c3bcc99da951b01725845 https://www.encodeproject.org/files/ENCFF778DJD/@@download/ENCFF778DJD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF430HVQ bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 253766811 ENCODE Processing Pipeline b4771d4d77beeca0513820fdae105685 https://www.encodeproject.org/files/ENCFF430HVQ/@@download/ENCFF430HVQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF453JMH bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 4418308 ENCODE Processing Pipeline f9321bb46ca8404037f7ac979252dc97 https://www.encodeproject.org/files/ENCFF453JMH/@@download/ENCFF453JMH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF247DGD bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 75060246 ENCODE Processing Pipeline 7bb511143454a1c277d5b55d264454a5 https://www.encodeproject.org/files/ENCFF247DGD/@@download/ENCFF247DGD.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF336RUV bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 254124756 ENCODE Processing Pipeline 2e1dd20ab80e7dd727718fa082d00e29 https://www.encodeproject.org/files/ENCFF336RUV/@@download/ENCFF336RUV.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF109XHK bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 487417894 ENCODE Processing Pipeline f1a8c7ed0767031344c87b8ff9ac18b1 https://www.encodeproject.org/files/ENCFF109XHK/@@download/ENCFF109XHK.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF049QIW bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 4478735 ENCODE Processing Pipeline 8007bd49ef246e7bd1ad4659d6649939 https://www.encodeproject.org/files/ENCFF049QIW/@@download/ENCFF049QIW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF566YYY bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 168248523 ENCODE Processing Pipeline e851a7664618b31c7f9faaa81367bf1d https://www.encodeproject.org/files/ENCFF566YYY/@@download/ENCFF566YYY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF920EHP bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 166380204 ENCODE Processing Pipeline baf2e1aefce638e5eb7d06d49632d0f5 https://www.encodeproject.org/files/ENCFF920EHP/@@download/ENCFF920EHP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF184OOD bed narrowPeak peaks and background as input for IDR ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 5158425 ENCODE Processing Pipeline de1257fee06c22932778959fff88476d https://www.encodeproject.org/files/ENCFF184OOD/@@download/ENCFF184OOD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF057SVP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF050CYK 664290 ENCODE Processing Pipeline 2fe60b2f81fa24889f0e06e3ec9acbfb https://www.encodeproject.org/files/ENCFF057SVP/@@download/ENCFF057SVP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF050CYK bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049QIW, ENCFF184OOD, ENCFF419RSJ, ENCFF453JMH 278015 ENCODE Processing Pipeline a64a1d9b30a499f0e1bc2617805d229e https://www.encodeproject.org/files/ENCFF050CYK/@@download/ENCFF050CYK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF864KHG bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF453JMH 10313780 ENCODE Processing Pipeline 25272ddebaf70660a4dbb132d432ac44 https://www.encodeproject.org/files/ENCFF864KHG/@@download/ENCFF864KHG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF782LFP bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF049QIW 10481427 ENCODE Processing Pipeline ad53f9e620626fe6973f33d0db61b410 https://www.encodeproject.org/files/ENCFF782LFP/@@download/ENCFF782LFP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF691EPA bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184OOD 13107859 ENCODE Processing Pipeline c2fb9bb3c3d7b19a7547eeccffbfd5c8 https://www.encodeproject.org/files/ENCFF691EPA/@@download/ENCFF691EPA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF549HYB bed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049QIW, ENCFF184OOD, ENCFF419RSJ, ENCFF453JMH 260217 ENCODE Processing Pipeline 77d62dc7fed15f27b85d8bfa0c77727a https://www.encodeproject.org/files/ENCFF549HYB/@@download/ENCFF549HYB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF499RIP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF549HYB 626553 ENCODE Processing Pipeline 700f1c39b79396be48dc6e1194101d97 https://www.encodeproject.org/files/ENCFF499RIP/@@download/ENCFF499RIP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF868YNQ fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF471LIQ 3809382477 Michael Snyder, Stanford 44f97dc5c095542580129b0fe7cace13 SRA:SRR5111230 https://www.encodeproject.org/files/ENCFF868YNQ/@@download/ENCFF868YNQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF471LIQ fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF868YNQ 3934254838 Michael Snyder, Stanford 6fb6bcf75cc29e181c697ed0d3866132 SRA:SRR5111230 https://www.encodeproject.org/files/ENCFF471LIQ/@@download/ENCFF471LIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF199JYM fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF699UWV 2907531802 Michael Snyder, Stanford 3f79449dacb5a42a97fa8e2dfc04e44d SRA:SRR5111231 https://www.encodeproject.org/files/ENCFF199JYM/@@download/ENCFF199JYM.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF699UWV fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF199JYM 3279571816 Michael Snyder, Stanford 3853bf98fe33171727b14b929c4cd268 SRA:SRR5111231 https://www.encodeproject.org/files/ENCFF699UWV/@@download/ENCFF699UWV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF586ZMB bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF699UWV, ENCFF807MUK 5412965233 ENCODE Processing Pipeline 3d3d1afff166aa32fa866681f75e90a8 https://www.encodeproject.org/files/ENCFF586ZMB/@@download/ENCFF586ZMB.bam hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF549EZJ bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF643CGH, ENCFF699UWV 5410690186 ENCODE Processing Pipeline f6212acedc0a170e821b92ddd5f35151 https://www.encodeproject.org/files/ENCFF549EZJ/@@download/ENCFF549EZJ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF475YMR bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF643CGH, ENCFF868YNQ 7537521957 ENCODE Processing Pipeline c1e7cf08bbe70c45304ab7ecb16a2210 https://www.encodeproject.org/files/ENCFF475YMR/@@download/ENCFF475YMR.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF585ZIJ bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF643CGH, ENCFF699UWV 2764973764 ENCODE Processing Pipeline 73941632302f1dd5e345a99e2c968415 https://www.encodeproject.org/files/ENCFF585ZIJ/@@download/ENCFF585ZIJ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF609ZXH bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF807MUK, ENCFF868YNQ 7671545852 ENCODE Processing Pipeline 4e019c28ae68518364e7430c9ed820b3 https://www.encodeproject.org/files/ENCFF609ZXH/@@download/ENCFF609ZXH.bam hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF792KZU bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF699UWV, ENCFF807MUK 2758279333 ENCODE Processing Pipeline 38796987b97f933f37f27315269e6152 https://www.encodeproject.org/files/ENCFF792KZU/@@download/ENCFF792KZU.bam hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF241ICI bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF643CGH, ENCFF868YNQ 5311210430 ENCODE Processing Pipeline 4ccb947e5112b4bc38cedb51b1c10975 https://www.encodeproject.org/files/ENCFF241ICI/@@download/ENCFF241ICI.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF744LEM bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF807MUK, ENCFF868YNQ 4994157742 ENCODE Processing Pipeline 517de504b6006063140ff7b595ca5c94 https://www.encodeproject.org/files/ENCFF744LEM/@@download/ENCFF744LEM.bam hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF407SQD bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 1358388821 ENCODE Processing Pipeline 3961a4308f31049822d4f99410cb3405 https://www.encodeproject.org/files/ENCFF407SQD/@@download/ENCFF407SQD.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF962NMS bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 1047009843 ENCODE Processing Pipeline bb8970c3c0e54e08416cfc470a963475 https://www.encodeproject.org/files/ENCFF962NMS/@@download/ENCFF962NMS.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF979CET bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 1904730764 ENCODE Processing Pipeline 7ed5b2c0ed0552675c8fe88cf034e811 https://www.encodeproject.org/files/ENCFF979CET/@@download/ENCFF979CET.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF248VMJ bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 1424404145 ENCODE Processing Pipeline 93c8e021af29cde40309234bb84fa570 https://www.encodeproject.org/files/ENCFF248VMJ/@@download/ENCFF248VMJ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF756XWM bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 990740611 ENCODE Processing Pipeline bc59f54400fc873259ff038fca0680f3 https://www.encodeproject.org/files/ENCFF756XWM/@@download/ENCFF756XWM.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF806TXV bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 2162032340 ENCODE Processing Pipeline cba87a61c39ae32d6c80709e0eb3382e https://www.encodeproject.org/files/ENCFF806TXV/@@download/ENCFF806TXV.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF297SZY bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 6877847 ENCODE Processing Pipeline c2b81806f84ef03fed647b67d570495d https://www.encodeproject.org/files/ENCFF297SZY/@@download/ENCFF297SZY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF272WZJ bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF742SNU 11394760 ENCODE Processing Pipeline f0b49d7b8f1778e935bbaf9cb1c10bae https://www.encodeproject.org/files/ENCFF272WZJ/@@download/ENCFF272WZJ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF742SNU bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 6734314 ENCODE Processing Pipeline c3c0bbc1f7fd34c2c4379c80b20493de https://www.encodeproject.org/files/ENCFF742SNU/@@download/ENCFF742SNU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF536TXK bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF297SZY 12715573 ENCODE Processing Pipeline 4cd151a5b4b6fac0a37ac73772f00436 https://www.encodeproject.org/files/ENCFF536TXK/@@download/ENCFF536TXK.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF321DBH bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 7239275 ENCODE Processing Pipeline 77d0d1ce18e4c6d53b3fa9cbdd4cc887 https://www.encodeproject.org/files/ENCFF321DBH/@@download/ENCFF321DBH.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF501JIG bed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF297SZY, ENCFF321DBH, ENCFF742SNU 203868 ENCODE Processing Pipeline 71633b43918531b43bfe0ba56a97a8e9 https://www.encodeproject.org/files/ENCFF501JIG/@@download/ENCFF501JIG.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF174DDQ bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF321DBH 13267238 ENCODE Processing Pipeline c8597b940a4b1b36d359a2f9e1c3209e https://www.encodeproject.org/files/ENCFF174DDQ/@@download/ENCFF174DDQ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF933WSV bigBed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF350TYT 418728 ENCODE Processing Pipeline ee8fc03f47925f8ba2dcab7bb14663ce https://www.encodeproject.org/files/ENCFF933WSV/@@download/ENCFF933WSV.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance mismatched status ENCFF357WYN bed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF297SZY, ENCFF321DBH, ENCFF742SNU 335989 ENCODE Processing Pipeline 2daa2dcb35564976ae966e9a8f326dce https://www.encodeproject.org/files/ENCFF357WYN/@@download/ENCFF357WYN.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF744RZX bigBed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF680VWV 754991 ENCODE Processing Pipeline 818a825740ca160750cd812e3db59aa4 https://www.encodeproject.org/files/ENCFF744RZX/@@download/ENCFF744RZX.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance mismatched status ENCFF015VMS bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 1497288744 ENCODE Processing Pipeline 575d54d1b13c2213bf386384b2991aa8 https://www.encodeproject.org/files/ENCFF015VMS/@@download/ENCFF015VMS.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF165XIT bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 983629476 ENCODE Processing Pipeline 1629af10797e2c2caecadedceec0e9d9 https://www.encodeproject.org/files/ENCFF165XIT/@@download/ENCFF165XIT.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF352ODB bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 1989089012 ENCODE Processing Pipeline 70493ecd1afbf5a1e34e3feee8bfe335 https://www.encodeproject.org/files/ENCFF352ODB/@@download/ENCFF352ODB.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF323AQN bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 1847586621 ENCODE Processing Pipeline 2f5c9e765e85943add19bc4f0ffe404c https://www.encodeproject.org/files/ENCFF323AQN/@@download/ENCFF323AQN.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF776BVO bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 995971948 ENCODE Processing Pipeline 6cb32e3b00cad16cb81216ead3a69110 https://www.encodeproject.org/files/ENCFF776BVO/@@download/ENCFF776BVO.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF072XFP bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF291LJS 13258062 ENCODE Processing Pipeline 4df6cc019629986bb3f917859cbeacf0 https://www.encodeproject.org/files/ENCFF072XFP/@@download/ENCFF072XFP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF354XYM bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF758VEQ 12822112 ENCODE Processing Pipeline d2e1c390bbf2e1f9340e4bf16cc13499 https://www.encodeproject.org/files/ENCFF354XYM/@@download/ENCFF354XYM.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF366YYF bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 2146641828 ENCODE Processing Pipeline 142be5c19dc9b8a3d441010597a9edb2 https://www.encodeproject.org/files/ENCFF366YYF/@@download/ENCFF366YYF.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF758VEQ bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 6918198 ENCODE Processing Pipeline df98c3be04b671ef12a941eec12cbd60 https://www.encodeproject.org/files/ENCFF758VEQ/@@download/ENCFF758VEQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF291LJS bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 7269479 ENCODE Processing Pipeline 65d667d1a113310c088ea9286232fd1d https://www.encodeproject.org/files/ENCFF291LJS/@@download/ENCFF291LJS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF289LNM bed narrowPeak peaks and background as input for IDR ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 6667499 ENCODE Processing Pipeline 26d720e963681bc780e0b7dd6ade4f44 https://www.encodeproject.org/files/ENCFF289LNM/@@download/ENCFF289LNM.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF217XIT bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF289LNM 11238682 ENCODE Processing Pipeline 4d89d56b55d59ec54084cec21e114452 https://www.encodeproject.org/files/ENCFF217XIT/@@download/ENCFF217XIT.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF823ISD bed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF289LNM, ENCFF291LJS, ENCFF419RSJ, ENCFF758VEQ 212269 ENCODE Processing Pipeline 5186525af18766b67a7a600aae5d08fb https://www.encodeproject.org/files/ENCFF823ISD/@@download/ENCFF823ISD.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF084IUW bed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF289LNM, ENCFF291LJS, ENCFF419RSJ, ENCFF758VEQ 349241 ENCODE Processing Pipeline 35a62c991e6daa6ac532e1dd8f033195 https://www.encodeproject.org/files/ENCFF084IUW/@@download/ENCFF084IUW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF404NHR bigBed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF823ISD 466657 ENCODE Processing Pipeline c385beb49c359639b4828be0766d874f https://www.encodeproject.org/files/ENCFF404NHR/@@download/ENCFF404NHR.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF480IWS bigBed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF084IUW 710546 ENCODE Processing Pipeline 8023a90b06d165a02a7298229bdeb0fd https://www.encodeproject.org/files/ENCFF480IWS/@@download/ENCFF480IWS.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance ENCFF000OFT bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OGC 1113241566 Richard Myers, HAIB 3abdba81426ae52373a6c75b95339d59 https://www.encodeproject.org/files/ENCFF000OFT/@@download/ENCFF000OFT.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OFU bigBed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZG 335763 Richard Myers, HAIB 7ee513aed7ebf3a90050f6ae71aad02e https://www.encodeproject.org/files/ENCFF000OFU/@@download/ENCFF000OFU.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OFV bigBed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZH 473452 Richard Myers, HAIB 953ae2c9c438f5d9030945de592d71e1 https://www.encodeproject.org/files/ENCFF000OFV/@@download/ENCFF000OFV.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OFW bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OGH 1284608236 Richard Myers, HAIB 52cdb4c4f095cfeb6e9d63502c07b590 https://www.encodeproject.org/files/ENCFF000OFW/@@download/ENCFF000OFW.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OFX bigWig raw signal ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 12071535 Richard Myers, HAIB b6c7aa2696639601db574251ef48dee4 https://www.encodeproject.org/files/ENCFF000OFX/@@download/ENCFF000OFX.bigWig hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OFZ bigWig raw signal ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 23907801 Richard Myers, HAIB 3da2acceb89c76e619cd2207c1ab0abb https://www.encodeproject.org/files/ENCFF000OFZ/@@download/ENCFF000OFZ.bigWig hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OGC fastq reads ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 753030876 Richard Myers, HAIB 29a0cf661050a49283a6613cc2208469 https://www.encodeproject.org/files/ENCFF000OGC/@@download/ENCFF000OGC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGH fastq reads ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1022932272 Richard Myers, HAIB 49c307b2f0e07072aee60541e02142f4 https://www.encodeproject.org/files/ENCFF000OGH/@@download/ENCFF000OGH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TZG bed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 149523 Richard Myers, HAIB 8e5843c97332009af35bd817479019f6 https://www.encodeproject.org/files/ENCFF001TZG/@@download/ENCFF001TZG.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TZH bed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 280865 Richard Myers, HAIB eeb7161043b1b3673aeda69cac596e5d https://www.encodeproject.org/files/ENCFF001TZH/@@download/ENCFF001TZH.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CHY bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 282154 ENCODE Consortium Analysis Working Group f6ea8668fc006929a00e08ac85165285 https://www.encodeproject.org/files/ENCFF002CHY/@@download/ENCFF002CHY.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF280GJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHY 661822 ENCODE Consortium 1f9897e64080715fa6e3eecf6cf0fa1b https://www.encodeproject.org/files/ENCFF280GJO/@@download/ENCFF280GJO.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF412ZRB bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF643CGH 970919450 ENCODE Processing Pipeline 8c490b2698707cb8fef89b72e2c6a87b https://www.encodeproject.org/files/ENCFF412ZRB/@@download/ENCFF412ZRB.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF575GRT bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF643CGH 566838088 ENCODE Processing Pipeline 8265b1603a327623600cae1fdc4919df https://www.encodeproject.org/files/ENCFF575GRT/@@download/ENCFF575GRT.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF985XWE bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF643CGH 1345408269 ENCODE Processing Pipeline f2c6e19143141b0c726a38d1dc07e0d9 https://www.encodeproject.org/files/ENCFF985XWE/@@download/ENCFF985XWE.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF177XDM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF643CGH 743430394 ENCODE Processing Pipeline 49149538d294da437dad4845ceb2fd06 https://www.encodeproject.org/files/ENCFF177XDM/@@download/ENCFF177XDM.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF686PRS bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF807MUK 967819421 ENCODE Processing Pipeline a0c934b43c13f53a027a0a4cfa7b8159 https://www.encodeproject.org/files/ENCFF686PRS/@@download/ENCFF686PRS.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF305OWM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF807MUK 563659161 ENCODE Processing Pipeline 122c8c7bc37b5e9c41417be5f1c8ec3c https://www.encodeproject.org/files/ENCFF305OWM/@@download/ENCFF305OWM.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF097OFH bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF807MUK 1340962166 ENCODE Processing Pipeline 3358765c2885d5589e9ccd4586c34eb3 https://www.encodeproject.org/files/ENCFF097OFH/@@download/ENCFF097OFH.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF388CVC bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF807MUK 738021623 ENCODE Processing Pipeline 2015c068fc357c88d41fc60b8f26ec7f https://www.encodeproject.org/files/ENCFF388CVC/@@download/ENCFF388CVC.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF182KYZ bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 255061285 ENCODE Processing Pipeline 07a84ee5b3faa66d74a9bce1530f7790 https://www.encodeproject.org/files/ENCFF182KYZ/@@download/ENCFF182KYZ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF105MPH bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 537222156 ENCODE Processing Pipeline 75f57d84518677ed13764334c344cd95 https://www.encodeproject.org/files/ENCFF105MPH/@@download/ENCFF105MPH.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF951TSS bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 4860295 ENCODE Processing Pipeline 0378174572aa280080c8fbebade0f3d0 https://www.encodeproject.org/files/ENCFF951TSS/@@download/ENCFF951TSS.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF071CCU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF767OVB 495252 ENCODE Processing Pipeline 75d075baff1bfc5b03c58c4912a0af09 https://www.encodeproject.org/files/ENCFF071CCU/@@download/ENCFF071CCU.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF041HHH bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 590037029 ENCODE Processing Pipeline c05b363b1f84473ce4072cfcb1913ba8 https://www.encodeproject.org/files/ENCFF041HHH/@@download/ENCFF041HHH.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF182UOW bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF500MWL 11270426 ENCODE Processing Pipeline 0e9eb035156e160356cd6c8577c7d423 https://www.encodeproject.org/files/ENCFF182UOW/@@download/ENCFF182UOW.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF767OVB bed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MWL, ENCFF552ARU, ENCFF951TSS 256334 ENCODE Processing Pipeline 4347abd67b74ad2f0ae63b23a3b75344 https://www.encodeproject.org/files/ENCFF767OVB/@@download/ENCFF767OVB.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF540AAP bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MWL, ENCFF552ARU, ENCFF951TSS 296703 ENCODE Processing Pipeline b57a74e5aefde946a17deafa312166e5 https://www.encodeproject.org/files/ENCFF540AAP/@@download/ENCFF540AAP.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF599JVH bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 440770358 ENCODE Processing Pipeline 998b94896f55e33cfb8a8e22d067e39b https://www.encodeproject.org/files/ENCFF599JVH/@@download/ENCFF599JVH.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF431HWK bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 447435664 ENCODE Processing Pipeline c145c26e467e9f187c4de6f776492f02 https://www.encodeproject.org/files/ENCFF431HWK/@@download/ENCFF431HWK.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF552ARU bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 4276491 ENCODE Processing Pipeline 00596bd90d24e6ae7ae0415d9b9d1bda https://www.encodeproject.org/files/ENCFF552ARU/@@download/ENCFF552ARU.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF500MWL bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 5380462 ENCODE Processing Pipeline 3c6d3fdc0ab5c03f9476432431c00dee https://www.encodeproject.org/files/ENCFF500MWL/@@download/ENCFF500MWL.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF703LXC bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF552ARU 10488664 ENCODE Processing Pipeline 7b5854eeee6123157f4ed83bb557f728 https://www.encodeproject.org/files/ENCFF703LXC/@@download/ENCFF703LXC.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF670GXF bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF951TSS 10983165 ENCODE Processing Pipeline 9836668706e09116647c73b2073cb64a https://www.encodeproject.org/files/ENCFF670GXF/@@download/ENCFF670GXF.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF845MJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF540AAP 672569 ENCODE Processing Pipeline 3133fda6609c451e52afe8ec5f1f6fc5 https://www.encodeproject.org/files/ENCFF845MJO/@@download/ENCFF845MJO.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF790GTG bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 367154319 ENCODE Processing Pipeline 3f476c1b6e030fcab2b49958ab810bd3 https://www.encodeproject.org/files/ENCFF790GTG/@@download/ENCFF790GTG.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF697UIX bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 252722852 ENCODE Processing Pipeline 118bd4836a3098abb303fb2e9f935103 https://www.encodeproject.org/files/ENCFF697UIX/@@download/ENCFF697UIX.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF950ZUX bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 400632900 ENCODE Processing Pipeline 3967cca05193d03d5bf6064f6965bb1e https://www.encodeproject.org/files/ENCFF950ZUX/@@download/ENCFF950ZUX.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF393YZE bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 520460804 ENCODE Processing Pipeline 9316d5c1614ce94d959aa279fe6c5c9b https://www.encodeproject.org/files/ENCFF393YZE/@@download/ENCFF393YZE.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF660IAV bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 586335003 ENCODE Processing Pipeline 2f78be6caf5011c466aff99e3a16e384 https://www.encodeproject.org/files/ENCFF660IAV/@@download/ENCFF660IAV.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF229EJD bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 366552642 ENCODE Processing Pipeline 8ac7a402c2db0a4cb0b99ceb684d921c https://www.encodeproject.org/files/ENCFF229EJD/@@download/ENCFF229EJD.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF411THR bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 540924624 ENCODE Processing Pipeline bf2ae531b1d8e2bd061020d8011fe3dc https://www.encodeproject.org/files/ENCFF411THR/@@download/ENCFF411THR.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF626GCR bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 4217685 ENCODE Processing Pipeline 713f7c15938a74780918c02c698d614e https://www.encodeproject.org/files/ENCFF626GCR/@@download/ENCFF626GCR.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF897WUX bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF626GCR 10422503 ENCODE Processing Pipeline 466a1feccfa25b70cefb0463ea626ecc https://www.encodeproject.org/files/ENCFF897WUX/@@download/ENCFF897WUX.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF070XEI bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF466MWY 11252634 ENCODE Processing Pipeline f5ddeac77900443c6a5e95d397c5927e https://www.encodeproject.org/files/ENCFF070XEI/@@download/ENCFF070XEI.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF270KWZ bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 4858938 ENCODE Processing Pipeline 921c7d3a7304282c1fbd1270122c75c3 https://www.encodeproject.org/files/ENCFF270KWZ/@@download/ENCFF270KWZ.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF466MWY bed narrowPeak peaks and background as input for IDR ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 5338861 ENCODE Processing Pipeline 7e3b5d35b97608971c26401399c1cadb https://www.encodeproject.org/files/ENCFF466MWY/@@download/ENCFF466MWY.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF544NRC bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF270KWZ, ENCFF466MWY, ENCFF626GCR 288644 ENCODE Processing Pipeline c83c2b45f1ee4fc7ad3a0bce44c11279 https://www.encodeproject.org/files/ENCFF544NRC/@@download/ENCFF544NRC.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF528MPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF544NRC 539605 ENCODE Processing Pipeline 16b2aa454feafb9fb601a05e08006ff1 https://www.encodeproject.org/files/ENCFF528MPL/@@download/ENCFF528MPL.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF430QAC bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270KWZ 10948773 ENCODE Processing Pipeline 9db3c15ce8e19f2c4d28ecd638503ce6 https://www.encodeproject.org/files/ENCFF430QAC/@@download/ENCFF430QAC.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF325FCK bed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF270KWZ, ENCFF466MWY, ENCFF626GCR 251008 ENCODE Processing Pipeline b888ed8b09e2012ec79b20eb1519b618 https://www.encodeproject.org/files/ENCFF325FCK/@@download/ENCFF325FCK.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF476ZNS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325FCK 488152 ENCODE Processing Pipeline 05e812a1cd804603c84aafa7bff69983 https://www.encodeproject.org/files/ENCFF476ZNS/@@download/ENCFF476ZNS.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WEV bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 431312426 Michael Snyder, Stanford 58fa9b54c0f1813f8649e01a83d056ba https://www.encodeproject.org/files/ENCFF000WEV/@@download/ENCFF000WEV.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000WEW bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 520084814 Michael Snyder, Stanford a6d1d272aa05267202f89061b0bfa92e https://www.encodeproject.org/files/ENCFF000WEW/@@download/ENCFF000WEW.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000WEX bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VFN 2163086 Michael Snyder, Stanford 1bf02bb0fa0f27746b5fc112ac19f41d https://www.encodeproject.org/files/ENCFF000WEX/@@download/ENCFF000WEX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WEY fastq reads ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 827881930 Michael Snyder, Stanford 0397c8004c5f4ded01b6a403a5696cca https://www.encodeproject.org/files/ENCFF000WEY/@@download/ENCFF000WEY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000WFA fastq reads ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1020129232 Michael Snyder, Stanford 58e19a0d1a46fe0a7edf4c1748565cce https://www.encodeproject.org/files/ENCFF000WFA/@@download/ENCFF000WFA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000WFC bigWig signal ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 373594859 Michael Snyder, Stanford c1d810e401be9dca46648603ab059585 https://www.encodeproject.org/files/ENCFF000WFC/@@download/ENCFF000WFC.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VFN bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 841418 Michael Snyder, Stanford 1916b7427c7e8f7f423c1475c65805a4 https://www.encodeproject.org/files/ENCFF001VFN/@@download/ENCFF001VFN.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CPQ bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 354983 ENCODE Consortium Analysis Working Group f532c9aab1abb230ed38c56d14833c17 https://www.encodeproject.org/files/ENCFF002CPQ/@@download/ENCFF002CPQ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF264HWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPQ 891858 ENCODE Consortium 936050a0994627cfb54f0672d1730562 https://www.encodeproject.org/files/ENCFF264HWV/@@download/ENCFF264HWV.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF650KNR bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF643CGH 1028941910 ENCODE Processing Pipeline 45513d73be17326e688e99c4a7b81312 https://www.encodeproject.org/files/ENCFF650KNR/@@download/ENCFF650KNR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF780BCV bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF643CGH 835852334 ENCODE Processing Pipeline af057ce9f8af90b8cf305076800cfdfc https://www.encodeproject.org/files/ENCFF780BCV/@@download/ENCFF780BCV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF261NIN bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF643CGH 671727486 ENCODE Processing Pipeline 5e437a7c91772d4f99e8c851d333f3e8 https://www.encodeproject.org/files/ENCFF261NIN/@@download/ENCFF261NIN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF600WBJ bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF643CGH 542771589 ENCODE Processing Pipeline 2d8e790e7728383aac130a20d230b10d https://www.encodeproject.org/files/ENCFF600WBJ/@@download/ENCFF600WBJ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF444FLD bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF807MUK 833154847 ENCODE Processing Pipeline 551ee0e1e222aacdd89b57819baee905 https://www.encodeproject.org/files/ENCFF444FLD/@@download/ENCFF444FLD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF644ZOB bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF807MUK 1026222775 ENCODE Processing Pipeline 1e8d60ca33927221ea371b83f3793e6d https://www.encodeproject.org/files/ENCFF644ZOB/@@download/ENCFF644ZOB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF581YGH bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF807MUK 539830788 ENCODE Processing Pipeline 677f911e7790afd53e66e8b7f0894310 https://www.encodeproject.org/files/ENCFF581YGH/@@download/ENCFF581YGH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF665YWG bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF807MUK 666273860 ENCODE Processing Pipeline f6e8abd753b585ccf0fd3ddcd352dde3 https://www.encodeproject.org/files/ENCFF665YWG/@@download/ENCFF665YWG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF193XZB bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 164423736 ENCODE Processing Pipeline 7353aafcf86064a0d7d176aada18fbeb https://www.encodeproject.org/files/ENCFF193XZB/@@download/ENCFF193XZB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF335IRX bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 230044230 ENCODE Processing Pipeline ded7dc9f96aca55157d880ce5ba6ede5 https://www.encodeproject.org/files/ENCFF335IRX/@@download/ENCFF335IRX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF729ZSP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF957YRU 621812 ENCODE Processing Pipeline ab1c0ab9b1301feb65a3f99a82ae6e0b https://www.encodeproject.org/files/ENCFF729ZSP/@@download/ENCFF729ZSP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF569VND bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 162829492 ENCODE Processing Pipeline b23a69e8ee44ab0e91c029f35ac49b89 https://www.encodeproject.org/files/ENCFF569VND/@@download/ENCFF569VND.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF630PWI bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 4523214 ENCODE Processing Pipeline d588aa903bae23565f688e60e4433892 https://www.encodeproject.org/files/ENCFF630PWI/@@download/ENCFF630PWI.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF226QFM bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 242875379 ENCODE Processing Pipeline 0e346c48e96b7de345188c4cb13a481a https://www.encodeproject.org/files/ENCFF226QFM/@@download/ENCFF226QFM.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF941AZB bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 5115206 ENCODE Processing Pipeline b6adb00e90b38282a2514b4649b10c67 https://www.encodeproject.org/files/ENCFF941AZB/@@download/ENCFF941AZB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF775YRI bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF453YFD 10319786 ENCODE Processing Pipeline 27efa18ed09d063c22bd80f3dbae0259 https://www.encodeproject.org/files/ENCFF775YRI/@@download/ENCFF775YRI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF888NIO bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF941AZB 13079654 ENCODE Processing Pipeline aa59eab82385f7853427137b9abe1478 https://www.encodeproject.org/files/ENCFF888NIO/@@download/ENCFF888NIO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF029IZU bed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF453YFD, ENCFF630PWI, ENCFF941AZB 236279 ENCODE Processing Pipeline b86a3e24028d7517a12ecfc4dd863231 https://www.encodeproject.org/files/ENCFF029IZU/@@download/ENCFF029IZU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF798BTY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF029IZU 516742 ENCODE Processing Pipeline d9ed471a39f51924d7c40306926c6fe6 https://www.encodeproject.org/files/ENCFF798BTY/@@download/ENCFF798BTY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF957YRU bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF453YFD, ENCFF630PWI, ENCFF941AZB 297607 ENCODE Processing Pipeline 5e70a5136c41813c1a7f9b17b00685f4 https://www.encodeproject.org/files/ENCFF957YRU/@@download/ENCFF957YRU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF717WRD bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF630PWI 10166569 ENCODE Processing Pipeline 1fe886be4ec61d47574ecac663adb52e https://www.encodeproject.org/files/ENCFF717WRD/@@download/ENCFF717WRD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF675XRW bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 74097582 ENCODE Processing Pipeline c0691a5694dbc52c1fdb3be6e4263e11 https://www.encodeproject.org/files/ENCFF675XRW/@@download/ENCFF675XRW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF816KEF bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 465669549 ENCODE Processing Pipeline 1c9d7042bf1f6499c67b2a31e296b607 https://www.encodeproject.org/files/ENCFF816KEF/@@download/ENCFF816KEF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF453YFD bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 4232997 ENCODE Processing Pipeline 7c4c672f1c0f3c9cf4efaf1e1b85c80b https://www.encodeproject.org/files/ENCFF453YFD/@@download/ENCFF453YFD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF875LEP bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 164557956 ENCODE Processing Pipeline 320e9f82d1aa6140dc9aef711135e725 https://www.encodeproject.org/files/ENCFF875LEP/@@download/ENCFF875LEP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF537BFY bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 4529843 ENCODE Processing Pipeline 828ee67b0c62b87af03bf528674e34da https://www.encodeproject.org/files/ENCFF537BFY/@@download/ENCFF537BFY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF958ONG bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 4231573 ENCODE Processing Pipeline 6ffc5bcc7d23a29f2159b035c15daf83 https://www.encodeproject.org/files/ENCFF958ONG/@@download/ENCFF958ONG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF611TBS bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF537BFY 10173044 ENCODE Processing Pipeline 2e891f503a928b6a691b8f06675582e8 https://www.encodeproject.org/files/ENCFF611TBS/@@download/ENCFF611TBS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF419JTY bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF958ONG 10322642 ENCODE Processing Pipeline 6602a713b82745c44e62fc047fa4e2c5 https://www.encodeproject.org/files/ENCFF419JTY/@@download/ENCFF419JTY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF061ZIL bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 465228027 ENCODE Processing Pipeline 0439181343de6ea00a064c9367b60abe https://www.encodeproject.org/files/ENCFF061ZIL/@@download/ENCFF061ZIL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF893XHO bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 167294404 ENCODE Processing Pipeline 5019fb21dfceb9ea4093728d858ea1ff https://www.encodeproject.org/files/ENCFF893XHO/@@download/ENCFF893XHO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF726EEW bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 235781104 ENCODE Processing Pipeline 9d054e3a31bd6de4e11c2db1b760b282 https://www.encodeproject.org/files/ENCFF726EEW/@@download/ENCFF726EEW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF631KSG bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 74115697 ENCODE Processing Pipeline ccc688980dde417617cdff1eb8a74061 https://www.encodeproject.org/files/ENCFF631KSG/@@download/ENCFF631KSG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF249MMR bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 240632043 ENCODE Processing Pipeline f555c1edad0a4382cc79cff6d3dcb5f3 https://www.encodeproject.org/files/ENCFF249MMR/@@download/ENCFF249MMR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF615RPH bed narrowPeak peaks and background as input for IDR ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 5139714 ENCODE Processing Pipeline 779acbef75815d13c4534193692edb45 https://www.encodeproject.org/files/ENCFF615RPH/@@download/ENCFF615RPH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF761NXV bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF615RPH 13072214 ENCODE Processing Pipeline 91ee6ced58d05af791669ebce7eb383b https://www.encodeproject.org/files/ENCFF761NXV/@@download/ENCFF761NXV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF859GGT bed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF537BFY, ENCFF615RPH, ENCFF958ONG 240334 ENCODE Processing Pipeline 3560051e39908a19a28b61d4d7345f62 https://www.encodeproject.org/files/ENCFF859GGT/@@download/ENCFF859GGT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF564YCW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF859GGT 520315 ENCODE Processing Pipeline cd2736e735f9b97b6ac529391be91cc1 https://www.encodeproject.org/files/ENCFF564YCW/@@download/ENCFF564YCW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF392JWA bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF537BFY, ENCFF615RPH, ENCFF958ONG 302040 ENCODE Processing Pipeline 49eddba7f71edca9132a90eac0c37865 https://www.encodeproject.org/files/ENCFF392JWA/@@download/ENCFF392JWA.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF210LQE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF392JWA 626651 ENCODE Processing Pipeline ea3a890b28a97533cf532ad4c597db6f https://www.encodeproject.org/files/ENCFF210LQE/@@download/ENCFF210LQE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF799NXM bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF807MUK, ENCFF836FDG 3513174279 ENCODE Processing Pipeline 15e6baf3ad67d3a594d38ebf68233ac5 https://www.encodeproject.org/files/ENCFF799NXM/@@download/ENCFF799NXM.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF907DJE bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF807MUK 3769644152 ENCODE Processing Pipeline 2996ebc828471123a595ccf312fea8f2 https://www.encodeproject.org/files/ENCFF907DJE/@@download/ENCFF907DJE.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF836FDG fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF622NJV 1701086995 Michael Snyder, Stanford 3f70a94034b9d27d33236b72f95d804b https://www.encodeproject.org/files/ENCFF836FDG/@@download/ENCFF836FDG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF207YYY fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF252LIU 1758803943 Michael Snyder, Stanford 3f3b5281faf4e6d4909e7430d389695a https://www.encodeproject.org/files/ENCFF207YYY/@@download/ENCFF207YYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF622NJV fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF836FDG 1741156007 Michael Snyder, Stanford e7f88a55b0235d76bb3bae88053695b7 https://www.encodeproject.org/files/ENCFF622NJV/@@download/ENCFF622NJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF252LIU fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF207YYY 1717315885 Michael Snyder, Stanford 8bd245c40160057c067c45579ed233d9 https://www.encodeproject.org/files/ENCFF252LIU/@@download/ENCFF252LIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF472GHA bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF807MUK, ENCFF836FDG 2300100963 ENCODE Processing Pipeline 4372c559e308e771f9cefcc3e332bd16 https://www.encodeproject.org/files/ENCFF472GHA/@@download/ENCFF472GHA.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF591PLS bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF807MUK 2983724100 ENCODE Processing Pipeline f090ae215e6e41ad3452588cc465b3c6 https://www.encodeproject.org/files/ENCFF591PLS/@@download/ENCFF591PLS.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF900IBD bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 1020571577 ENCODE Processing Pipeline 7412f9ed49e6865397316ed7b9e57242 https://www.encodeproject.org/files/ENCFF900IBD/@@download/ENCFF900IBD.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF381AAI bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 1000949745 ENCODE Processing Pipeline 035534d95a7360cc67d26c6f1058a6d7 https://www.encodeproject.org/files/ENCFF381AAI/@@download/ENCFF381AAI.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF838SEV bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 1892813822 ENCODE Processing Pipeline 659eb8187770859b81d5a40d21defa1c https://www.encodeproject.org/files/ENCFF838SEV/@@download/ENCFF838SEV.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF125JWM bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 854684640 ENCODE Processing Pipeline 25c528faada19734774ab24213456b70 https://www.encodeproject.org/files/ENCFF125JWM/@@download/ENCFF125JWM.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF118TZR bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 964288590 ENCODE Processing Pipeline 62c9fa69ca26ef29cb6848358e09f479 https://www.encodeproject.org/files/ENCFF118TZR/@@download/ENCFF118TZR.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF284FKX bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 1835649328 ENCODE Processing Pipeline 057690290c9e0f8c8a20d1805352e2bd https://www.encodeproject.org/files/ENCFF284FKX/@@download/ENCFF284FKX.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF706SMS bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 6048487 ENCODE Processing Pipeline 120337e4ca0cb8e4c946c6dfb3c7aaf1 https://www.encodeproject.org/files/ENCFF706SMS/@@download/ENCFF706SMS.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF437MOX bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 7129787 ENCODE Processing Pipeline 5beac432d0733a9568fc3b6af3d38738 https://www.encodeproject.org/files/ENCFF437MOX/@@download/ENCFF437MOX.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF482LKM bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 6444097 ENCODE Processing Pipeline c3ce88fd1d3c7ec3c755107b7a8bac6e https://www.encodeproject.org/files/ENCFF482LKM/@@download/ENCFF482LKM.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF298JWO bigBed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF113VFJ 232806 ENCODE Processing Pipeline 48227a59ae724d271a360bb0fd56c55a https://www.encodeproject.org/files/ENCFF298JWO/@@download/ENCFF298JWO.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF907XHS bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF706SMS 13198244 ENCODE Processing Pipeline 3ffcd2d70f549bb67aefea66ffcf4b55 https://www.encodeproject.org/files/ENCFF907XHS/@@download/ENCFF907XHS.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF728STH bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF482LKM 13292046 ENCODE Processing Pipeline fa6c829313636a1daf080e84605875e6 https://www.encodeproject.org/files/ENCFF728STH/@@download/ENCFF728STH.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF113VFJ bed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF437MOX, ENCFF482LKM, ENCFF706SMS 91541 ENCODE Processing Pipeline d1296fa79c4fc76c95424a3b714fc5b9 https://www.encodeproject.org/files/ENCFF113VFJ/@@download/ENCFF113VFJ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF858SQW bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF437MOX 13065650 ENCODE Processing Pipeline af02121e7e66eb1a6179f5cdbad23c2c https://www.encodeproject.org/files/ENCFF858SQW/@@download/ENCFF858SQW.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF184UJK bigBed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063WXY 297702 ENCODE Processing Pipeline 5aaffe8216e18e87fde9312c8cdaff4b https://www.encodeproject.org/files/ENCFF184UJK/@@download/ENCFF184UJK.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF063WXY bed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF437MOX, ENCFF482LKM, ENCFF706SMS 134101 ENCODE Processing Pipeline 4c972067fd18a0101bf8d3c87a5f66f9 https://www.encodeproject.org/files/ENCFF063WXY/@@download/ENCFF063WXY.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF155FNB bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF643CGH 3771529958 ENCODE Processing Pipeline c2fbfdab7661627c4583e17c0310a261 https://www.encodeproject.org/files/ENCFF155FNB/@@download/ENCFF155FNB.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF018TUW bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF643CGH, ENCFF836FDG 3513810159 ENCODE Processing Pipeline ba423a095ba4a33a387cc592da712c79 https://www.encodeproject.org/files/ENCFF018TUW/@@download/ENCFF018TUW.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF879NVM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF643CGH, ENCFF836FDG 2302532918 ENCODE Processing Pipeline 44ff8b76e87263a3f073029c527c72e0 https://www.encodeproject.org/files/ENCFF879NVM/@@download/ENCFF879NVM.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF009QHM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF643CGH 2987126373 ENCODE Processing Pipeline 4ad6b9cc217ff731c228d23fca0e5378 https://www.encodeproject.org/files/ENCFF009QHM/@@download/ENCFF009QHM.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF040GPY bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 1016532331 ENCODE Processing Pipeline 03b1a600320e416f546b82aaa2b24901 https://www.encodeproject.org/files/ENCFF040GPY/@@download/ENCFF040GPY.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF435AGY bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 1067396678 ENCODE Processing Pipeline abe1dee9e6a5e04e26637fb431e65924 https://www.encodeproject.org/files/ENCFF435AGY/@@download/ENCFF435AGY.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF494QMA bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 1579610192 ENCODE Processing Pipeline 6fbfc5af5c936bd230ab1436a8a3ce06 https://www.encodeproject.org/files/ENCFF494QMA/@@download/ENCFF494QMA.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF120DLU bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 852523431 ENCODE Processing Pipeline bc4dcb0ef93d85de8d461610a7ad9701 https://www.encodeproject.org/files/ENCFF120DLU/@@download/ENCFF120DLU.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF858OSO bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 953028357 ENCODE Processing Pipeline 2f36a5255d06042570c7834bd048cc5e https://www.encodeproject.org/files/ENCFF858OSO/@@download/ENCFF858OSO.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF873VXN bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 1835346783 ENCODE Processing Pipeline b372ac065a441cc18db88d172c3cc5b0 https://www.encodeproject.org/files/ENCFF873VXN/@@download/ENCFF873VXN.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF016PDY bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 5913372 ENCODE Processing Pipeline 5f4531bd0be5281e935d2b132a9231c8 https://www.encodeproject.org/files/ENCFF016PDY/@@download/ENCFF016PDY.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF915OZF bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 7067214 ENCODE Processing Pipeline 9d178339f34d4725832ab1fa4a2b25f5 https://www.encodeproject.org/files/ENCFF915OZF/@@download/ENCFF915OZF.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF234NSX bed narrowPeak peaks and background as input for IDR ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 6321305 ENCODE Processing Pipeline 0a31c1feb233d3a7956536496cc37a95 https://www.encodeproject.org/files/ENCFF234NSX/@@download/ENCFF234NSX.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF406CHE bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF016PDY 13153864 ENCODE Processing Pipeline 5936db74bd801027936e0ecb06584f7e https://www.encodeproject.org/files/ENCFF406CHE/@@download/ENCFF406CHE.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF183DGJ bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF234NSX 13281720 ENCODE Processing Pipeline f7f50af8fa22d01b84246bd78af7cc8c https://www.encodeproject.org/files/ENCFF183DGJ/@@download/ENCFF183DGJ.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF483MBO bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF915OZF 13045242 ENCODE Processing Pipeline 58a44be9efeb39795686d890fbda8ca1 https://www.encodeproject.org/files/ENCFF483MBO/@@download/ENCFF483MBO.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF447UIU bigBed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF060MGE 225332 ENCODE Processing Pipeline 4e78db03d19a2d6f5aff1c488136d66d https://www.encodeproject.org/files/ENCFF447UIU/@@download/ENCFF447UIU.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF412GFI bed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF016PDY, ENCFF234NSX, ENCFF419RSJ, ENCFF915OZF 127697 ENCODE Processing Pipeline 5af51fe03e6020d40a59ee2625e7b16f https://www.encodeproject.org/files/ENCFF412GFI/@@download/ENCFF412GFI.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF060MGE bed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF016PDY, ENCFF234NSX, ENCFF419RSJ, ENCFF915OZF 84396 ENCODE Processing Pipeline 0c109b185e7c3d30fcd7ba120ef2cad6 https://www.encodeproject.org/files/ENCFF060MGE/@@download/ENCFF060MGE.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF610OPL bigBed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF412GFI 292807 ENCODE Processing Pipeline d6a57597f53684d7c47b7697780c5ecf https://www.encodeproject.org/files/ENCFF610OPL/@@download/ENCFF610OPL.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF783FYL fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF923XLP 5363253018 Michael Snyder, Stanford c2504194462ca7a4705348ab627ee673 SRA:SRR6214328 https://www.encodeproject.org/files/ENCFF783FYL/@@download/ENCFF783FYL.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF108FHI fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF863MQV 5864015771 Michael Snyder, Stanford 9e160c0931368a06be39c467fe512de0 SRA:SRR6214327 https://www.encodeproject.org/files/ENCFF108FHI/@@download/ENCFF108FHI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF923XLP fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF783FYL 6012552866 Michael Snyder, Stanford ff00523913aeefd4254eb363670b5955 SRA:SRR6214328 https://www.encodeproject.org/files/ENCFF923XLP/@@download/ENCFF923XLP.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF863MQV fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF108FHI 5994809923 Michael Snyder, Stanford ff89492f3616a87c2ff763e7162ad947 SRA:SRR6214327 https://www.encodeproject.org/files/ENCFF863MQV/@@download/ENCFF863MQV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF906XQL bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF643CGH, ENCFF863MQV 11059835857 ENCODE Processing Pipeline 8ea7f4a6b9cca4c03a5c85301dec3e10 https://www.encodeproject.org/files/ENCFF906XQL/@@download/ENCFF906XQL.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF754BHC bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF643CGH, ENCFF863MQV 7619322716 ENCODE Processing Pipeline 53486943c9cd2452f412c764e9a27b56 https://www.encodeproject.org/files/ENCFF754BHC/@@download/ENCFF754BHC.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF469MPJ bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF783FYL, ENCFF923XLP 6778413852 ENCODE Processing Pipeline 02511169afe25a93959844f7be551638 https://www.encodeproject.org/files/ENCFF469MPJ/@@download/ENCFF469MPJ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF006TBL bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF783FYL, ENCFF923XLP 10205847370 ENCODE Processing Pipeline 1835ecfe56df2f1693729b3919bdff36 https://www.encodeproject.org/files/ENCFF006TBL/@@download/ENCFF006TBL.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF737QVI bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 2094483007 ENCODE Processing Pipeline 71fe9494cb2c242741073205b45f89a0 https://www.encodeproject.org/files/ENCFF737QVI/@@download/ENCFF737QVI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF362LDM bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 1441050758 ENCODE Processing Pipeline a7dd6446e7c526a7d8842827f98f12e1 https://www.encodeproject.org/files/ENCFF362LDM/@@download/ENCFF362LDM.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF527IDU bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 2259844044 ENCODE Processing Pipeline f2ffda80d8d0049f7536b1ac5aa0f567 https://www.encodeproject.org/files/ENCFF527IDU/@@download/ENCFF527IDU.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF580CHX bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 2220566625 ENCODE Processing Pipeline e52b6c5eba276b396386dcbd322e934e https://www.encodeproject.org/files/ENCFF580CHX/@@download/ENCFF580CHX.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF986WGR bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 1891569792 ENCODE Processing Pipeline 169ebf529040b025fd596074b703293b https://www.encodeproject.org/files/ENCFF986WGR/@@download/ENCFF986WGR.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF291BKK bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 4180871962 ENCODE Processing Pipeline 32a8304ebeb7121f05100fc554077356 https://www.encodeproject.org/files/ENCFF291BKK/@@download/ENCFF291BKK.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF948DZI bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 7136961 ENCODE Processing Pipeline d42a88adf4e497c57ca172538ce5b39f https://www.encodeproject.org/files/ENCFF948DZI/@@download/ENCFF948DZI.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF770DUQ bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 7122491 ENCODE Processing Pipeline fda11838249361742ed42137a14fbcb0 https://www.encodeproject.org/files/ENCFF770DUQ/@@download/ENCFF770DUQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF699UQY bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 7221494 ENCODE Processing Pipeline e62cd6fa8dbe8167974bebb8b7150751 https://www.encodeproject.org/files/ENCFF699UQY/@@download/ENCFF699UQY.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF369DTJ bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF948DZI 10730583 ENCODE Processing Pipeline 2999132ba51acd469369d897e6e71566 https://www.encodeproject.org/files/ENCFF369DTJ/@@download/ENCFF369DTJ.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF323OZX bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF770DUQ 13101043 ENCODE Processing Pipeline e5ad8c13b2af0744cfba53574a95b9d6 https://www.encodeproject.org/files/ENCFF323OZX/@@download/ENCFF323OZX.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF990MTR bed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF699UQY, ENCFF770DUQ, ENCFF948DZI 105645 ENCODE Processing Pipeline e76a1d445e443d7ffc70c66b50bf07b0 https://www.encodeproject.org/files/ENCFF990MTR/@@download/ENCFF990MTR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF220KAF bigBed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF990MTR 257557 ENCODE Processing Pipeline 04ced39c443e70868cd3c2f518250bdf https://www.encodeproject.org/files/ENCFF220KAF/@@download/ENCFF220KAF.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF812KOO bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF699UQY 12897056 ENCODE Processing Pipeline 2a0f7202fd30d91667301aa7c00a6801 https://www.encodeproject.org/files/ENCFF812KOO/@@download/ENCFF812KOO.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF132EMG bigBed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF578XIP 240906 ENCODE Processing Pipeline dcd31ffad092896297fe65454f12ac53 https://www.encodeproject.org/files/ENCFF132EMG/@@download/ENCFF132EMG.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF578XIP bed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF699UQY, ENCFF770DUQ, ENCFF948DZI 95624 ENCODE Processing Pipeline 21175c8d5c1532bf591c295aaa97d40d https://www.encodeproject.org/files/ENCFF578XIP/@@download/ENCFF578XIP.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF403HEO bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF807MUK, ENCFF863MQV 11051439427 ENCODE Processing Pipeline e02a4df9bdaac067567c87ab13e253d0 https://www.encodeproject.org/files/ENCFF403HEO/@@download/ENCFF403HEO.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF486NOF bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF783FYL, ENCFF807MUK, ENCFF923XLP 6762554719 ENCODE Processing Pipeline 4f98ddf13fb98db928c4cbb41c1fcbf3 https://www.encodeproject.org/files/ENCFF486NOF/@@download/ENCFF486NOF.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF343TNY bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF783FYL, ENCFF807MUK, ENCFF923XLP 10200842882 ENCODE Processing Pipeline 5f9400f83aa3dbc499eaa82a41618c89 https://www.encodeproject.org/files/ENCFF343TNY/@@download/ENCFF343TNY.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF794TKO bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF807MUK, ENCFF863MQV 7599465720 ENCODE Processing Pipeline 9c2f0abb8e648c335c7cc2c703d6c4d6 https://www.encodeproject.org/files/ENCFF794TKO/@@download/ENCFF794TKO.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF013LVV bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2070325792 ENCODE Processing Pipeline 2f2d05639d303c35e866dfe33de23be3 https://www.encodeproject.org/files/ENCFF013LVV/@@download/ENCFF013LVV.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF464PUE bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 1432505481 ENCODE Processing Pipeline 91db0833df756a3f1fee22ac1a6db70e https://www.encodeproject.org/files/ENCFF464PUE/@@download/ENCFF464PUE.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF291AYM bed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF014VXF, ENCFF348PZF, ENCFF870DSA 92017 ENCODE Processing Pipeline 494ab95cfe23df4bd90c90c2603c5a4f https://www.encodeproject.org/files/ENCFF291AYM/@@download/ENCFF291AYM.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF843ZBP bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF870DSA 13092323 ENCODE Processing Pipeline b4c3573180b49e1a3781fb2667050f69 https://www.encodeproject.org/files/ENCFF843ZBP/@@download/ENCFF843ZBP.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF531ZQX bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF348PZF 12866716 ENCODE Processing Pipeline 02d0104bb1e3905bfdca9b6b048c17d3 https://www.encodeproject.org/files/ENCFF531ZQX/@@download/ENCFF531ZQX.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF266WRI bigBed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF291AYM 230351 ENCODE Processing Pipeline 8dfb0246ceb8325c7a22fd20b27504d7 https://www.encodeproject.org/files/ENCFF266WRI/@@download/ENCFF266WRI.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF016FYZ bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 1877883878 ENCODE Processing Pipeline e7b27f22d9230e7bcda44d34b3d722c7 https://www.encodeproject.org/files/ENCFF016FYZ/@@download/ENCFF016FYZ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF285JUZ bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 4203159773 ENCODE Processing Pipeline 96e774027053d7b227be9e6dcc822fc5 https://www.encodeproject.org/files/ENCFF285JUZ/@@download/ENCFF285JUZ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF014VXF bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 7125011 ENCODE Processing Pipeline 2c378fb23bfd4dd50251096f46e8c02a https://www.encodeproject.org/files/ENCFF014VXF/@@download/ENCFF014VXF.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF348PZF bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 7201771 ENCODE Processing Pipeline 07e8abba768e3b1e2838b4b6fbae1f5e https://www.encodeproject.org/files/ENCFF348PZF/@@download/ENCFF348PZF.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF612SAZ bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF014VXF 10707159 ENCODE Processing Pipeline 9f49cedb108d9ed1044d54951918502b https://www.encodeproject.org/files/ENCFF612SAZ/@@download/ENCFF612SAZ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF790HQV bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2267136318 ENCODE Processing Pipeline eb7b169a436024696509162e8ef103ce https://www.encodeproject.org/files/ENCFF790HQV/@@download/ENCFF790HQV.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF864JSL bigBed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF980KSV 246383 ENCODE Processing Pipeline 61daa07edd292414487f4d6c9b5f24c4 https://www.encodeproject.org/files/ENCFF864JSL/@@download/ENCFF864JSL.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF636NOW bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2192035687 ENCODE Processing Pipeline d8ed1e716252de8ba88add75c1957137 https://www.encodeproject.org/files/ENCFF636NOW/@@download/ENCFF636NOW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF870DSA bed narrowPeak peaks and background as input for IDR ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 7089816 ENCODE Processing Pipeline d154c929c75e48d94a7457c55991af23 https://www.encodeproject.org/files/ENCFF870DSA/@@download/ENCFF870DSA.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF980KSV bed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF014VXF, ENCFF348PZF, ENCFF870DSA 101906 ENCODE Processing Pipeline ceed3be232cda7bc789bc4f322683f0f https://www.encodeproject.org/files/ENCFF980KSV/@@download/ENCFF980KSV.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF000NVG bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NVQ 693766087 Richard Myers, HAIB 42aa302e95ac2b21de910709447c584a https://www.encodeproject.org/files/ENCFF000NVG/@@download/ENCFF000NVG.bam hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NVL bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NVV 701022640 Richard Myers, HAIB 515504ae91539f0f653c44a08f0578ee https://www.encodeproject.org/files/ENCFF000NVL/@@download/ENCFF000NVL.bam hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NVN bigWig raw signal ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 10384665 Richard Myers, HAIB 48401e339b59d86b5b598caa3409e0ce https://www.encodeproject.org/files/ENCFF000NVN/@@download/ENCFF000NVN.bigWig hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000NVO bigWig raw signal ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 6105224 Richard Myers, HAIB f093d89a74862c938802730867234437 https://www.encodeproject.org/files/ENCFF000NVO/@@download/ENCFF000NVO.bigWig hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000NVQ fastq reads ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 615753404 Richard Myers, HAIB 2d5ca71a2ea105a422f38e65780fc4a6 https://www.encodeproject.org/files/ENCFF000NVQ/@@download/ENCFF000NVQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NVV fastq reads ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 665129448 Richard Myers, HAIB fada711c920c8a8b43c5379ac8928d16 https://www.encodeproject.org/files/ENCFF000NVV/@@download/ENCFF000NVV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TWZ bed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 20025 Richard Myers, HAIB 2fb3ce61ce132662e53108db0e56d3e0 https://www.encodeproject.org/files/ENCFF001TWZ/@@download/ENCFF001TWZ.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TXB bed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 55523 Richard Myers, HAIB 1aa9b3494015216bb74bcbbcd65e239b https://www.encodeproject.org/files/ENCFF001TXB/@@download/ENCFF001TXB.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CGY bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 82458 ENCODE Consortium Analysis Working Group 4d8a69baf039742337c0db70c72aad8a https://www.encodeproject.org/files/ENCFF002CGY/@@download/ENCFF002CGY.bed.gz hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF799MEK bigBed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWZ 75656 ENCODE Consortium 8609b67105c6d9cf8ef1a5865c2cb90c https://www.encodeproject.org/files/ENCFF799MEK/@@download/ENCFF799MEK.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF675NIE bigBed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXB 142118 ENCODE Consortium 625c86af77e7c7e124cac8f550e3a0b3 https://www.encodeproject.org/files/ENCFF675NIE/@@download/ENCFF675NIE.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF419POP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGY 194620 ENCODE Consortium e7aefd497650cc2617fdc7db7303bfb5 https://www.encodeproject.org/files/ENCFF419POP/@@download/ENCFF419POP.bigBed hg19 archived moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF230YPD bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF643CGH 876149398 ENCODE Processing Pipeline 395fb17dc8bf455adb3f7feb422ceddb https://www.encodeproject.org/files/ENCFF230YPD/@@download/ENCFF230YPD.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF226OCU bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF643CGH 841190708 ENCODE Processing Pipeline 9b977b9f9d12d187e90d4b409d63afc9 https://www.encodeproject.org/files/ENCFF226OCU/@@download/ENCFF226OCU.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF606IKC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF643CGH 477560048 ENCODE Processing Pipeline 76ca7d31bf442632fba9a4800ca2d196 https://www.encodeproject.org/files/ENCFF606IKC/@@download/ENCFF606IKC.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF135UPU bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF643CGH 440830031 ENCODE Processing Pipeline 1d700cce82f88d32b7a60031b335f388 https://www.encodeproject.org/files/ENCFF135UPU/@@download/ENCFF135UPU.bam GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF293YYY bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF807MUK 874247375 ENCODE Processing Pipeline 8039afffb1372ce31c4c50a803c1634d https://www.encodeproject.org/files/ENCFF293YYY/@@download/ENCFF293YYY.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF952WXS bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF807MUK 839173578 ENCODE Processing Pipeline 567909af6d32e871c562928854c9f8c0 https://www.encodeproject.org/files/ENCFF952WXS/@@download/ENCFF952WXS.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF371ZBY bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF807MUK 438392999 ENCODE Processing Pipeline 286b0efc48b9f1f8e9ba3faa161e3e9d https://www.encodeproject.org/files/ENCFF371ZBY/@@download/ENCFF371ZBY.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF477EHC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF807MUK 474541605 ENCODE Processing Pipeline 6260e93f25984f6d00b70e88fac094a4 https://www.encodeproject.org/files/ENCFF477EHC/@@download/ENCFF477EHC.bam hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF401NGY bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 416871046 ENCODE Processing Pipeline f65d5fd214b31296e2407ca7a06b131d https://www.encodeproject.org/files/ENCFF401NGY/@@download/ENCFF401NGY.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF884UUR bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 351212679 ENCODE Processing Pipeline b430a30f81508a6cd6e1b303bffbec93 https://www.encodeproject.org/files/ENCFF884UUR/@@download/ENCFF884UUR.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF705GGU bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 296177227 ENCODE Processing Pipeline 4361967f3bae5d4d59ce364debe14791 https://www.encodeproject.org/files/ENCFF705GGU/@@download/ENCFF705GGU.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF466MBM bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 510269668 ENCODE Processing Pipeline ddcad0c19108b7324f96072907c956dc https://www.encodeproject.org/files/ENCFF466MBM/@@download/ENCFF466MBM.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF988QZX bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 262061172 ENCODE Processing Pipeline 78834e4f2b535217d662f8547624c9b8 https://www.encodeproject.org/files/ENCFF988QZX/@@download/ENCFF988QZX.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF103EJS bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 487982582 ENCODE Processing Pipeline aed1ac8bf75d2d61070b5bd69de1536a https://www.encodeproject.org/files/ENCFF103EJS/@@download/ENCFF103EJS.bigWig GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF765BOE bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 4759637 ENCODE Processing Pipeline 45b156dea8f15ac1d9ec4988a60cdcb1 https://www.encodeproject.org/files/ENCFF765BOE/@@download/ENCFF765BOE.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF668BWD bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 4327453 ENCODE Processing Pipeline 0d9a6ac6aaf09b34b1e31d2fbffc7242 https://www.encodeproject.org/files/ENCFF668BWD/@@download/ENCFF668BWD.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF816QSU bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 3918961 ENCODE Processing Pipeline d893130237d5b63cc1eec40c6ab037f7 https://www.encodeproject.org/files/ENCFF816QSU/@@download/ENCFF816QSU.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF954RBG bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF668BWD 10230974 ENCODE Processing Pipeline 9e92b20421922eb3b2d166e67b360963 https://www.encodeproject.org/files/ENCFF954RBG/@@download/ENCFF954RBG.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF712LEE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF363SYB 393528 ENCODE Processing Pipeline 504864eff7cb035d326781eccc17b493 https://www.encodeproject.org/files/ENCFF712LEE/@@download/ENCFF712LEE.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF024WRJ bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF816QSU 8123889 ENCODE Processing Pipeline 31a57d578047fb999b3805d8b4105643 https://www.encodeproject.org/files/ENCFF024WRJ/@@download/ENCFF024WRJ.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF365JTV bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF765BOE 10942901 ENCODE Processing Pipeline d1a9bc7dbf868ac74c28ac6ec2b7d130 https://www.encodeproject.org/files/ENCFF365JTV/@@download/ENCFF365JTV.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF980VOD bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF668BWD, ENCFF765BOE, ENCFF816QSU 225543 ENCODE Processing Pipeline 45dda8fed51a820cd2132d244827ce50 https://www.encodeproject.org/files/ENCFF980VOD/@@download/ENCFF980VOD.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF363SYB bed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF668BWD, ENCFF765BOE, ENCFF816QSU 190019 ENCODE Processing Pipeline 815cd829e21e45c95935ed2673d016c3 https://www.encodeproject.org/files/ENCFF363SYB/@@download/ENCFF363SYB.bed.gz GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF501GFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF980VOD 445937 ENCODE Processing Pipeline ecd50c625f16a7115f0c261a07d1e3fb https://www.encodeproject.org/files/ENCFF501GFQ/@@download/ENCFF501GFQ.bigBed GRCh38 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF834LXR bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 411420133 ENCODE Processing Pipeline 448459b52220ba31c84c4dfc8c05385e https://www.encodeproject.org/files/ENCFF834LXR/@@download/ENCFF834LXR.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF923WCL bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 372193160 ENCODE Processing Pipeline 84b7ab6cb8add1ba1c076ed19b17d500 https://www.encodeproject.org/files/ENCFF923WCL/@@download/ENCFF923WCL.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF785CYN bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 510807899 ENCODE Processing Pipeline 77fcba2a5821e9aea29e5b6264326b8f https://www.encodeproject.org/files/ENCFF785CYN/@@download/ENCFF785CYN.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF419ZNP bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 295857791 ENCODE Processing Pipeline baa21f168252a5b44fbb85e264bac24a https://www.encodeproject.org/files/ENCFF419ZNP/@@download/ENCFF419ZNP.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF778HRP bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 264207900 ENCODE Processing Pipeline 8c80c250c5b3676f7a2c9113a7d0baef https://www.encodeproject.org/files/ENCFF778HRP/@@download/ENCFF778HRP.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF075PCI bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 4277244 ENCODE Processing Pipeline e42f904d05a8e549ceaf5946f90b146c https://www.encodeproject.org/files/ENCFF075PCI/@@download/ENCFF075PCI.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF292DYY bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 487745445 ENCODE Processing Pipeline e341ab75127d58429ba0a1544d18730e https://www.encodeproject.org/files/ENCFF292DYY/@@download/ENCFF292DYY.bigWig hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF570ZKC bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 4764310 ENCODE Processing Pipeline 9008e249892a4a93cc7aea671123de79 https://www.encodeproject.org/files/ENCFF570ZKC/@@download/ENCFF570ZKC.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF836NUY bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF075PCI 10158524 ENCODE Processing Pipeline 123d6134752422785fc128e9c2809ec4 https://www.encodeproject.org/files/ENCFF836NUY/@@download/ENCFF836NUY.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF565SXH bed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF075PCI, ENCFF570ZKC, ENCFF883DUG 190404 ENCODE Processing Pipeline f7bbc9921859f1a9056d4ef23f3d1ccd https://www.encodeproject.org/files/ENCFF565SXH/@@download/ENCFF565SXH.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF332PGQ bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF075PCI, ENCFF570ZKC, ENCFF883DUG 223403 ENCODE Processing Pipeline e5bebc61c5e4cd79bae1c050a283c860 https://www.encodeproject.org/files/ENCFF332PGQ/@@download/ENCFF332PGQ.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF871WRF bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF570ZKC 10943724 ENCODE Processing Pipeline 66c03e8ea1939f6beb0abbb1ef89572f https://www.encodeproject.org/files/ENCFF871WRF/@@download/ENCFF871WRF.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF116FMX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF565SXH 392736 ENCODE Processing Pipeline 7e6cd80db08439c146cc83458422debc https://www.encodeproject.org/files/ENCFF116FMX/@@download/ENCFF116FMX.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF975POW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF332PGQ 441036 ENCODE Processing Pipeline 8d250f4e82150862508458ce5d03a16e https://www.encodeproject.org/files/ENCFF975POW/@@download/ENCFF975POW.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF883DUG bed narrowPeak peaks and background as input for IDR ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 3918845 ENCODE Processing Pipeline 1c823522588c52a4e26b23b040b53980 https://www.encodeproject.org/files/ENCFF883DUG/@@download/ENCFF883DUG.bed.gz hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF933NIR bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF883DUG 8112118 ENCODE Processing Pipeline fb86986a8746c0f1234f1855ba8e5827 https://www.encodeproject.org/files/ENCFF933NIR/@@download/ENCFF933NIR.bigBed hg19 released moderate library complexity, low read length, borderline replicate concordance, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF117OQA bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF807MUK 866945015 ENCODE Processing Pipeline 1542e77b3521235468fe54d55c7c5071 https://www.encodeproject.org/files/ENCFF117OQA/@@download/ENCFF117OQA.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF481YNF bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF807MUK 1152351065 ENCODE Processing Pipeline cf250a7bee1d9b82227d7c3b5c62be19 https://www.encodeproject.org/files/ENCFF481YNF/@@download/ENCFF481YNF.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF613IHB bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF688WOB 10942664 ENCODE Processing Pipeline c852de144d93a0e77a6b0683f3cadf69 https://www.encodeproject.org/files/ENCFF613IHB/@@download/ENCFF613IHB.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF878ZPT bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 5396705 ENCODE Processing Pipeline 99aadb727633a69d09b34588bf5f5923 https://www.encodeproject.org/files/ENCFF878ZPT/@@download/ENCFF878ZPT.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF688WOB bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4317244 ENCODE Processing Pipeline ca4086a0202c64d1ebea3c36c2a83996 https://www.encodeproject.org/files/ENCFF688WOB/@@download/ENCFF688WOB.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF191TQD bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3666893 ENCODE Processing Pipeline 1dbb0ee0b20c3bfca65897da6ddd66b2 https://www.encodeproject.org/files/ENCFF191TQD/@@download/ENCFF191TQD.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF181YAD bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF191TQD 8150947 ENCODE Processing Pipeline 647b4a3224d6c9dda5911ec4a6a3e444 https://www.encodeproject.org/files/ENCFF181YAD/@@download/ENCFF181YAD.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF298UPI bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF191TQD, ENCFF688WOB, ENCFF878ZPT 28532 ENCODE Processing Pipeline c82f947c982c796763283fc21f4ad097 https://www.encodeproject.org/files/ENCFF298UPI/@@download/ENCFF298UPI.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF947QEA bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF878ZPT 11549389 ENCODE Processing Pipeline 207510fac02df0e0ca02f77382472266 https://www.encodeproject.org/files/ENCFF947QEA/@@download/ENCFF947QEA.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF791WCX bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF191TQD, ENCFF688WOB, ENCFF878ZPT 18148 ENCODE Processing Pipeline c285a9bceb41e31fedc33fb964bf1484 https://www.encodeproject.org/files/ENCFF791WCX/@@download/ENCFF791WCX.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF846HFA bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF791WCX 73762 ENCODE Processing Pipeline 54b17b3eea6fc1ebca438400c95f265d https://www.encodeproject.org/files/ENCFF846HFA/@@download/ENCFF846HFA.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF930SKY bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF298UPI 104805 ENCODE Processing Pipeline 63418de95e4c39ba5da371e5feea07c7 https://www.encodeproject.org/files/ENCFF930SKY/@@download/ENCFF930SKY.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002EDB fastq reads ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 732930371 Michael Snyder, Stanford b841b981ba56bd8d0f6b06630c5c62eb SRA:SRR5111626 https://www.encodeproject.org/files/ENCFF002EDB/@@download/ENCFF002EDB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002EDC fastq reads ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 953763669 Michael Snyder, Stanford 0b635a0b6aaad2e54cfdb900364f430d SRA:SRR5111625 https://www.encodeproject.org/files/ENCFF002EDC/@@download/ENCFF002EDC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF688XDE bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF807MUK 522494891 ENCODE Processing Pipeline 42f067dc855f6b99bda9cb57c48ae3e0 https://www.encodeproject.org/files/ENCFF688XDE/@@download/ENCFF688XDE.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF370YOR bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF807MUK 783455395 ENCODE Processing Pipeline 4f469c02debe083f58593471e22d9853 https://www.encodeproject.org/files/ENCFF370YOR/@@download/ENCFF370YOR.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF400IYT bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 507163589 ENCODE Processing Pipeline b50dc8efef33c96683cccc183b1429de https://www.encodeproject.org/files/ENCFF400IYT/@@download/ENCFF400IYT.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF547UIH bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 533558000 ENCODE Processing Pipeline 5f5ad1f12242103fb748715238add84d https://www.encodeproject.org/files/ENCFF547UIH/@@download/ENCFF547UIH.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF716SCW bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 819488233 ENCODE Processing Pipeline 90401cc2d8dedba28bb3d7c3867fdb9a https://www.encodeproject.org/files/ENCFF716SCW/@@download/ENCFF716SCW.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF235EQL bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 415628285 ENCODE Processing Pipeline 06999945c5d148e973534f7a208801ba https://www.encodeproject.org/files/ENCFF235EQL/@@download/ENCFF235EQL.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF832XNG bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 308616595 ENCODE Processing Pipeline f89d8402aa2891facfb546cba576a314 https://www.encodeproject.org/files/ENCFF832XNG/@@download/ENCFF832XNG.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF127MEU bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 826071349 ENCODE Processing Pipeline 57007e44ebd101c3aeb4e20fa6b19aad https://www.encodeproject.org/files/ENCFF127MEU/@@download/ENCFF127MEU.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF882ZXB bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 5639989 ENCODE Processing Pipeline 79f408885f4e361cc1a0efb641fa0465 https://www.encodeproject.org/files/ENCFF882ZXB/@@download/ENCFF882ZXB.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF157WOM bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF911LYM 11158215 ENCODE Processing Pipeline 1e63f5fa579c7246562e97400ecf46d8 https://www.encodeproject.org/files/ENCFF157WOM/@@download/ENCFF157WOM.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF393HCV bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF830BYO 8398385 ENCODE Processing Pipeline 1725ce1792a517534ad0c36601d3b069 https://www.encodeproject.org/files/ENCFF393HCV/@@download/ENCFF393HCV.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF911LYM bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4521251 ENCODE Processing Pipeline d5130701e176e5988d36e1886b8008a0 https://www.encodeproject.org/files/ENCFF911LYM/@@download/ENCFF911LYM.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF830BYO bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3770088 ENCODE Processing Pipeline fe9c7b6828ab89faf53c0114b285c86b https://www.encodeproject.org/files/ENCFF830BYO/@@download/ENCFF830BYO.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF348PVD bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF882ZXB 11593028 ENCODE Processing Pipeline 3dbc4d5feacc9d1c6c904f0117867584 https://www.encodeproject.org/files/ENCFF348PVD/@@download/ENCFF348PVD.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF390GUF bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF643CGH 868807661 ENCODE Processing Pipeline 438d7fb7a17bf47411a7b7e4f0b73937 https://www.encodeproject.org/files/ENCFF390GUF/@@download/ENCFF390GUF.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF033TCK bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF643CGH 1155210937 ENCODE Processing Pipeline 0755c23be08aa50ff83e7f57440b51dd https://www.encodeproject.org/files/ENCFF033TCK/@@download/ENCFF033TCK.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF396GSL bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF643CGH 522450414 ENCODE Processing Pipeline e58d6951401674cd52447625be791fd2 https://www.encodeproject.org/files/ENCFF396GSL/@@download/ENCFF396GSL.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF898VJT bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF643CGH 783900089 ENCODE Processing Pipeline 8bd9b2db923a1e2f1e0db4d530180527 https://www.encodeproject.org/files/ENCFF898VJT/@@download/ENCFF898VJT.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF255SBJ bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 4080894 ENCODE Processing Pipeline 0e292baeb46507c15b06241013acafaf https://www.encodeproject.org/files/ENCFF255SBJ/@@download/ENCFF255SBJ.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF405XEK bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX, ENCFF255SBJ, ENCFF419RSJ, ENCFF437EFE 18757 ENCODE Processing Pipeline 61309e08a5289f59db64aa51691bdd2d https://www.encodeproject.org/files/ENCFF405XEK/@@download/ENCFF405XEK.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF069GIR bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 820210627 ENCODE Processing Pipeline f095fdf4f90b5bfa43fde0ace9335871 https://www.encodeproject.org/files/ENCFF069GIR/@@download/ENCFF069GIR.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF238DAU bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 428295478 ENCODE Processing Pipeline a225848b02d9a22c61cbd29e281d9419 https://www.encodeproject.org/files/ENCFF238DAU/@@download/ENCFF238DAU.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF404UZJ bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 311349171 ENCODE Processing Pipeline c82bdd6bcb67cf14955a921792eaa060 https://www.encodeproject.org/files/ENCFF404UZJ/@@download/ENCFF404UZJ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF628NVL bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 500033421 ENCODE Processing Pipeline d0542ac8db4fb44703f4d36f4a07f2e5 https://www.encodeproject.org/files/ENCFF628NVL/@@download/ENCFF628NVL.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF151LGF bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 851100916 ENCODE Processing Pipeline 4a311aec80acd8bf6026ed4419633405 https://www.encodeproject.org/files/ENCFF151LGF/@@download/ENCFF151LGF.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF124ZNT bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 492409328 ENCODE Processing Pipeline 15deb89e7f0d80d6a6d63c807a2a281e https://www.encodeproject.org/files/ENCFF124ZNT/@@download/ENCFF124ZNT.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF437EFE bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 3714948 ENCODE Processing Pipeline 0de295eb5b0cb924e8b8126429be8b62 https://www.encodeproject.org/files/ENCFF437EFE/@@download/ENCFF437EFE.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF520HKL bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX 11510030 ENCODE Processing Pipeline 822588ffaf0b08d1a8dcfe7461caf189 https://www.encodeproject.org/files/ENCFF520HKL/@@download/ENCFF520HKL.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF041BSX bed narrowPeak peaks and background as input for IDR ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 5002995 ENCODE Processing Pipeline 2b0dd988dc15c50fea8beb40f7aafb60 https://www.encodeproject.org/files/ENCFF041BSX/@@download/ENCFF041BSX.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF793EJG bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF405XEK 75844 ENCODE Processing Pipeline c4bf00b4e981515d8a659848d4d8fe96 https://www.encodeproject.org/files/ENCFF793EJG/@@download/ENCFF793EJG.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF295ZLM bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX, ENCFF255SBJ, ENCFF419RSJ, ENCFF437EFE 25004 ENCODE Processing Pipeline 965aa86a8a223ee6b88bc0af9d70ad12 https://www.encodeproject.org/files/ENCFF295ZLM/@@download/ENCFF295ZLM.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF671MXW bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF255SBJ 10798163 ENCODE Processing Pipeline 14f131fb321236a0193de85ef0cdf71b https://www.encodeproject.org/files/ENCFF671MXW/@@download/ENCFF671MXW.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF572SVT bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF437EFE 8257343 ENCODE Processing Pipeline b52f978a86b90f2d302913f7c53e5372 https://www.encodeproject.org/files/ENCFF572SVT/@@download/ENCFF572SVT.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF184JCC bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295ZLM 84671 ENCODE Processing Pipeline a105a66cee06cc1654acb31df6119b96 https://www.encodeproject.org/files/ENCFF184JCC/@@download/ENCFF184JCC.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF754GFB bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF745TNJ 79176 ENCODE Processing Pipeline f7ebd722c235c9a0be5cef1a4104114a https://www.encodeproject.org/files/ENCFF754GFB/@@download/ENCFF754GFB.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF499CTR bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF830BYO, ENCFF882ZXB, ENCFF911LYM 15112 ENCODE Processing Pipeline b108c317673dec9960139af499b92dbe https://www.encodeproject.org/files/ENCFF499CTR/@@download/ENCFF499CTR.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF802EUE bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF499CTR 69889 ENCODE Processing Pipeline 4930714fcf8b551a54544060d77d1f48 https://www.encodeproject.org/files/ENCFF802EUE/@@download/ENCFF802EUE.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF745TNJ bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF830BYO, ENCFF882ZXB, ENCFF911LYM 21700 ENCODE Processing Pipeline 39ff0a17cad317e0bf09d204c549746b https://www.encodeproject.org/files/ENCFF745TNJ/@@download/ENCFF745TNJ.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF000WAS bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 392323523 Michael Snyder, Stanford af55699051245edf18a0e061146dcd07 https://www.encodeproject.org/files/ENCFF000WAS/@@download/ENCFF000WAS.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000WAT bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 420818817 Michael Snyder, Stanford 5f42bbac44759c96755de774cc12af47 https://www.encodeproject.org/files/ENCFF000WAT/@@download/ENCFF000WAT.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000WAU bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEY 2440992 Michael Snyder, Stanford 4ea24bb7853a79a8518337722aa7ebba https://www.encodeproject.org/files/ENCFF000WAU/@@download/ENCFF000WAU.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000WAV fastq reads ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 693626229 Michael Snyder, Stanford 710e333efec6b7cd08e5f13407f25baa https://www.encodeproject.org/files/ENCFF000WAV/@@download/ENCFF000WAV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000WAX fastq reads ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 737040426 Michael Snyder, Stanford a0892f076ce71d1e9aac6da2b38c3ea8 https://www.encodeproject.org/files/ENCFF000WAX/@@download/ENCFF000WAX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000WBA bigWig signal ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 316089033 Michael Snyder, Stanford 99d776eadfe37b45719d76a84c3b6c12 https://www.encodeproject.org/files/ENCFF000WBA/@@download/ENCFF000WBA.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001VEY bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 943968 Michael Snyder, Stanford b47d8a6898a2ae6b6a627b61d201b056 https://www.encodeproject.org/files/ENCFF001VEY/@@download/ENCFF001VEY.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002CPF bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 152762 ENCODE Consortium Analysis Working Group 9cc0e437af92a42a1da3184eaddbcf0a https://www.encodeproject.org/files/ENCFF002CPF/@@download/ENCFF002CPF.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF739TLC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPF 416806 ENCODE Consortium 01e27bd5a408180e21abfae5c01fba71 https://www.encodeproject.org/files/ENCFF739TLC/@@download/ENCFF739TLC.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF241IKD bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF643CGH 767226539 ENCODE Processing Pipeline dc224fadcc65c6f2e090e5a66e2e8527 https://www.encodeproject.org/files/ENCFF241IKD/@@download/ENCFF241IKD.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF832UST bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF643CGH 506260300 ENCODE Processing Pipeline 9fc4c76466445f66609839c6a0ba861f https://www.encodeproject.org/files/ENCFF832UST/@@download/ENCFF832UST.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF084NIJ bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF643CGH 725258278 ENCODE Processing Pipeline 0c4146ed90b072ba3ca33f6a72038696 https://www.encodeproject.org/files/ENCFF084NIJ/@@download/ENCFF084NIJ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF120MJN bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF643CGH 486600264 ENCODE Processing Pipeline f8a93b3a26bb0dd1fb9ace88406aa029 https://www.encodeproject.org/files/ENCFF120MJN/@@download/ENCFF120MJN.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF175QVH bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF807MUK 722780271 ENCODE Processing Pipeline eb0d9d56280e830a66867cfd5fe8e3fd https://www.encodeproject.org/files/ENCFF175QVH/@@download/ENCFF175QVH.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF331KEV bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF807MUK 486206675 ENCODE Processing Pipeline 6d88f2733ec306b82327096ade54102a https://www.encodeproject.org/files/ENCFF331KEV/@@download/ENCFF331KEV.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF947DUD bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF807MUK 764568340 ENCODE Processing Pipeline 175ff7e709134a1782b1568072153ab9 https://www.encodeproject.org/files/ENCFF947DUD/@@download/ENCFF947DUD.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF977PDQ bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF807MUK 505632304 ENCODE Processing Pipeline 11564625327619206181c261a2e55811 https://www.encodeproject.org/files/ENCFF977PDQ/@@download/ENCFF977PDQ.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF430WLR bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 211238689 ENCODE Processing Pipeline 9a4e8db9db2c8e09b4053bab964732d8 https://www.encodeproject.org/files/ENCFF430WLR/@@download/ENCFF430WLR.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF054VPQ bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 191998232 ENCODE Processing Pipeline 0a3355a88a0f1001f56a0ebb12d75f22 https://www.encodeproject.org/files/ENCFF054VPQ/@@download/ENCFF054VPQ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF527FBU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF462GHD 635591 ENCODE Processing Pipeline c44e6a8fdaeb0184a79a1a5fdfa29f2e https://www.encodeproject.org/files/ENCFF527FBU/@@download/ENCFF527FBU.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF325CVO bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 229204017 ENCODE Processing Pipeline 61a1d50b166e363ee9ca34b23b77f4c9 https://www.encodeproject.org/files/ENCFF325CVO/@@download/ENCFF325CVO.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF277LGX bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF832BPN 10009383 ENCODE Processing Pipeline 4ac26849f10fe8a040bea8b88fd05371 https://www.encodeproject.org/files/ENCFF277LGX/@@download/ENCFF277LGX.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF473XOV bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF632WHJ 10863862 ENCODE Processing Pipeline 1a2d3f9d6490c9a9a76b558b2f49230f https://www.encodeproject.org/files/ENCFF473XOV/@@download/ENCFF473XOV.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF902OLH bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 220317224 ENCODE Processing Pipeline 326ac12246cd1313492450b813779984 https://www.encodeproject.org/files/ENCFF902OLH/@@download/ENCFF902OLH.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF981IPY bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 4488501 ENCODE Processing Pipeline 068912a3f4e79bb4e1af6fe5b56c1127 https://www.encodeproject.org/files/ENCFF981IPY/@@download/ENCFF981IPY.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF632WHJ bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 4948043 ENCODE Processing Pipeline 5451c95216a5ce055cb4f2f7ae3937d8 https://www.encodeproject.org/files/ENCFF632WHJ/@@download/ENCFF632WHJ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF481NEK bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF981IPY 10131172 ENCODE Processing Pipeline d3617a8306c4582382bf5488af23f79b https://www.encodeproject.org/files/ENCFF481NEK/@@download/ENCFF481NEK.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF462GHD bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF632WHJ, ENCFF832BPN, ENCFF981IPY 297848 ENCODE Processing Pipeline d24dbbf4eb07c49cf63b19d7a03b606a https://www.encodeproject.org/files/ENCFF462GHD/@@download/ENCFF462GHD.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF585GAT bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 212163136 ENCODE Processing Pipeline 917e50ea0051a6e0ba04f04e704aa4d1 https://www.encodeproject.org/files/ENCFF585GAT/@@download/ENCFF585GAT.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF279XNH bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 407102192 ENCODE Processing Pipeline b4209bb565db369aa4933062c186a3aa https://www.encodeproject.org/files/ENCFF279XNH/@@download/ENCFF279XNH.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF832BPN bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 4241624 ENCODE Processing Pipeline f3455cfebc308f6dc6b360696db47636 https://www.encodeproject.org/files/ENCFF832BPN/@@download/ENCFF832BPN.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF620PNQ bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 217845093 ENCODE Processing Pipeline e63c5ca49948a98314fdfbc26020dcc3 https://www.encodeproject.org/files/ENCFF620PNQ/@@download/ENCFF620PNQ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF030LQV bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 4500807 ENCODE Processing Pipeline 53c12c6bc40b9f8ce2c0e2835702844f https://www.encodeproject.org/files/ENCFF030LQV/@@download/ENCFF030LQV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF173DLD bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 211227037 ENCODE Processing Pipeline fbd72cd1167178e8f89a6f6489d5c60e https://www.encodeproject.org/files/ENCFF173DLD/@@download/ENCFF173DLD.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF927DVL bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 4955743 ENCODE Processing Pipeline 16f3ecd5c46a7fbb521d907e0772d968 https://www.encodeproject.org/files/ENCFF927DVL/@@download/ENCFF927DVL.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF199BGY bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF030LQV 10178333 ENCODE Processing Pipeline 0383bfc41140fae98e4ff40cca8a6011 https://www.encodeproject.org/files/ENCFF199BGY/@@download/ENCFF199BGY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF244ZHS bed narrowPeak conservative idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030LQV, ENCFF419RSJ, ENCFF927DVL, ENCFF996TEH 302332 ENCODE Processing Pipeline 4717e7b7ad78cae9b068072a010fabe2 https://www.encodeproject.org/files/ENCFF244ZHS/@@download/ENCFF244ZHS.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF167VDA bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 404974764 ENCODE Processing Pipeline 49a3fbd66b0c83b81c8a7c17927b7a8a https://www.encodeproject.org/files/ENCFF167VDA/@@download/ENCFF167VDA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF972JRU bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF996TEH 10012575 ENCODE Processing Pipeline b3eb0b0756da6985f725bb478d0abaf2 https://www.encodeproject.org/files/ENCFF972JRU/@@download/ENCFF972JRU.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF080HJX bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030LQV, ENCFF419RSJ, ENCFF927DVL, ENCFF996TEH 366595 ENCODE Processing Pipeline dd99ff2eac862c56eddcba2b601d7efc https://www.encodeproject.org/files/ENCFF080HJX/@@download/ENCFF080HJX.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF538UBZ bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 191973130 ENCODE Processing Pipeline a5407c99f04e65f5159d5953c68d1005 https://www.encodeproject.org/files/ENCFF538UBZ/@@download/ENCFF538UBZ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF996TEH bed narrowPeak peaks and background as input for IDR ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 4262611 ENCODE Processing Pipeline bdd47898dcbf7b29bd3950d32d6d6fb5 https://www.encodeproject.org/files/ENCFF996TEH/@@download/ENCFF996TEH.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF947QVB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF244ZHS 643994 ENCODE Processing Pipeline 178b2daa424a3bb2a8daae9f565bd74d https://www.encodeproject.org/files/ENCFF947QVB/@@download/ENCFF947QVB.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF559ADQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF080HJX 752301 ENCODE Processing Pipeline 872020914521ee51a4e4d852b8d87a90 https://www.encodeproject.org/files/ENCFF559ADQ/@@download/ENCFF559ADQ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF346XKS bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 212176437 ENCODE Processing Pipeline 2c667c58bc6a3c1664465433e332591d https://www.encodeproject.org/files/ENCFF346XKS/@@download/ENCFF346XKS.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF051OZL bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 230571179 ENCODE Processing Pipeline 5d14ab8dc65222359d01b9179e9622f6 https://www.encodeproject.org/files/ENCFF051OZL/@@download/ENCFF051OZL.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF633LPZ bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF927DVL 10861921 ENCODE Processing Pipeline d462374026e69aee42727b8d53944c11 https://www.encodeproject.org/files/ENCFF633LPZ/@@download/ENCFF633LPZ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF047KRZ bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF690LCG, ENCFF807MUK 6791242841 ENCODE Processing Pipeline e1dfe61a983e5f403669fb4d37e3bd74 https://www.encodeproject.org/files/ENCFF047KRZ/@@download/ENCFF047KRZ.bam hg19 released antibody characterized with exemption ENCFF506RUD bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF807MUK, ENCFF918XGV 7037337659 ENCODE Processing Pipeline a09dfa38e71c313c382d44e4026302b3 https://www.encodeproject.org/files/ENCFF506RUD/@@download/ENCFF506RUD.bam hg19 released antibody characterized with exemption ENCFF088UFA fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF918XGV 3229829366 Michael Snyder, Stanford 40109ebbd9954f9ce930b4db0860e61e SRA:SRR5111189 https://www.encodeproject.org/files/ENCFF088UFA/@@download/ENCFF088UFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released antibody characterized with exemption ENCFF690LCG fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF019KRR 3085773474 Michael Snyder, Stanford d74b0c57041f91d4d2301d9e3cfcfc09 SRA:SRR5111190 https://www.encodeproject.org/files/ENCFF690LCG/@@download/ENCFF690LCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released antibody characterized with exemption ENCFF019KRR fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF690LCG 3191244303 Michael Snyder, Stanford d985f86ce016e794354843c6c885d1bc SRA:SRR5111190 https://www.encodeproject.org/files/ENCFF019KRR/@@download/ENCFF019KRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released antibody characterized with exemption ENCFF918XGV fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF088UFA 3331736328 Michael Snyder, Stanford f457d4dcbdbc31d2914d1c0a46e8df7c SRA:SRR5111189 https://www.encodeproject.org/files/ENCFF918XGV/@@download/ENCFF918XGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released antibody characterized with exemption ENCFF746YDX bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF019KRR, ENCFF690LCG, ENCFF807MUK 6009581100 ENCODE Processing Pipeline 67554948fa0de34f25c2208e28a9be24 https://www.encodeproject.org/files/ENCFF746YDX/@@download/ENCFF746YDX.bam hg19 released antibody characterized with exemption ENCFF330CTW bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF088UFA, ENCFF807MUK, ENCFF918XGV 6243354059 ENCODE Processing Pipeline dd6ebafcaf524cc257a5f90f95b6c985 https://www.encodeproject.org/files/ENCFF330CTW/@@download/ENCFF330CTW.bam hg19 released antibody characterized with exemption ENCFF754LWC bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 1452813532 ENCODE Processing Pipeline 5fa0da9aafab9783c442c8c70aa5a6a2 https://www.encodeproject.org/files/ENCFF754LWC/@@download/ENCFF754LWC.bigWig hg19 released antibody characterized with exemption ENCFF498EIR bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 2448083247 ENCODE Processing Pipeline b33c9602977375344662680755df4d29 https://www.encodeproject.org/files/ENCFF498EIR/@@download/ENCFF498EIR.bigWig hg19 released antibody characterized with exemption ENCFF926DDP bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 1850026534 ENCODE Processing Pipeline 356ca910d4bbeb00de28e733a2802357 https://www.encodeproject.org/files/ENCFF926DDP/@@download/ENCFF926DDP.bigWig hg19 released antibody characterized with exemption ENCFF817ZDW bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 1424492096 ENCODE Processing Pipeline 55869d378b1dc175b6f0511cd3464297 https://www.encodeproject.org/files/ENCFF817ZDW/@@download/ENCFF817ZDW.bigWig hg19 released antibody characterized with exemption ENCFF816GZA bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 7055337 ENCODE Processing Pipeline 24bd8f967eba6f9dec0cbc4183746bcc https://www.encodeproject.org/files/ENCFF816GZA/@@download/ENCFF816GZA.bed.gz hg19 released antibody characterized with exemption ENCFF991QKE bed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF432SFP, ENCFF637CIX, ENCFF816GZA 315561 ENCODE Processing Pipeline 0f90970b02d5a7404fcdb69263f4e5d7 https://www.encodeproject.org/files/ENCFF991QKE/@@download/ENCFF991QKE.bed.gz hg19 released antibody characterized with exemption ENCFF303UTJ bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 2524002041 ENCODE Processing Pipeline 85043bf296759b50ef3dd56e143011a1 https://www.encodeproject.org/files/ENCFF303UTJ/@@download/ENCFF303UTJ.bigWig hg19 released antibody characterized with exemption ENCFF318KKI bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF816GZA 12440524 ENCODE Processing Pipeline fdb66b9cb05834a07791a0270f576f42 https://www.encodeproject.org/files/ENCFF318KKI/@@download/ENCFF318KKI.bigBed hg19 released antibody characterized with exemption ENCFF355TXO bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 1905167700 ENCODE Processing Pipeline dad5a1f8c7c279e3cc48a945c003f2f1 https://www.encodeproject.org/files/ENCFF355TXO/@@download/ENCFF355TXO.bigWig hg19 released antibody characterized with exemption ENCFF432SFP bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 7177504 ENCODE Processing Pipeline 65f6c3aba9694573c9d8cafb32d95669 https://www.encodeproject.org/files/ENCFF432SFP/@@download/ENCFF432SFP.bed.gz hg19 released antibody characterized with exemption ENCFF610UFA bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF637CIX 12853343 ENCODE Processing Pipeline dc7dc1cffb2addf2b6ca8bffd7b845c2 https://www.encodeproject.org/files/ENCFF610UFA/@@download/ENCFF610UFA.bigBed hg19 released antibody characterized with exemption ENCFF935HIG bed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF432SFP, ENCFF637CIX, ENCFF816GZA 401608 ENCODE Processing Pipeline 10e3149096e5eb728da6251a011656f6 https://www.encodeproject.org/files/ENCFF935HIG/@@download/ENCFF935HIG.bed.gz hg19 released antibody characterized with exemption ENCFF383LBC bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF432SFP 12496691 ENCODE Processing Pipeline ad7f658a66638a301ae19e4e0ec0441b https://www.encodeproject.org/files/ENCFF383LBC/@@download/ENCFF383LBC.bigBed hg19 released antibody characterized with exemption ENCFF247RBA bigBed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF887GJW 640107 ENCODE Processing Pipeline a65261bc66dadfb3529ca87a59e386de https://www.encodeproject.org/files/ENCFF247RBA/@@download/ENCFF247RBA.bigBed hg19 released antibody characterized with exemption mismatched status ENCFF637CIX bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 7177132 ENCODE Processing Pipeline b0429ae29455c952bff9b5a57d7585e6 https://www.encodeproject.org/files/ENCFF637CIX/@@download/ENCFF637CIX.bed.gz hg19 released antibody characterized with exemption ENCFF732NVF bigBed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF417REY 771819 ENCODE Processing Pipeline bf1d9a65f25797e66680cd9a89719605 https://www.encodeproject.org/files/ENCFF732NVF/@@download/ENCFF732NVF.bigBed hg19 released antibody characterized with exemption mismatched status ENCFF189AGH bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF643CGH, ENCFF690LCG 6794233278 ENCODE Processing Pipeline 153d2fa72d8ac81e1c80a05f60658c2c https://www.encodeproject.org/files/ENCFF189AGH/@@download/ENCFF189AGH.bam GRCh38 released antibody characterized with exemption ENCFF186XNP bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF643CGH, ENCFF918XGV 7041390023 ENCODE Processing Pipeline 6322f4d66c363ccc9d7d2978b778e7ec https://www.encodeproject.org/files/ENCFF186XNP/@@download/ENCFF186XNP.bam GRCh38 released antibody characterized with exemption ENCFF773BVT bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF643CGH, ENCFF690LCG 6025797328 ENCODE Processing Pipeline 6689330653f67ca3041501603fa19494 https://www.encodeproject.org/files/ENCFF773BVT/@@download/ENCFF773BVT.bam GRCh38 released antibody characterized with exemption ENCFF121WPI bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF643CGH, ENCFF918XGV 6253790320 ENCODE Processing Pipeline eb4e8fb55ca4c5c2136eb38f0b06902c https://www.encodeproject.org/files/ENCFF121WPI/@@download/ENCFF121WPI.bam GRCh38 released antibody characterized with exemption ENCFF807IZE bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 1752893437 ENCODE Processing Pipeline 16c9df9ff5b1098e3c414d5445ce213e https://www.encodeproject.org/files/ENCFF807IZE/@@download/ENCFF807IZE.bigWig GRCh38 released antibody characterized with exemption ENCFF383OXH bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 1419253384 ENCODE Processing Pipeline e83e9a2b5b8ef0b8339d80c89e5abd7f https://www.encodeproject.org/files/ENCFF383OXH/@@download/ENCFF383OXH.bigWig GRCh38 released antibody characterized with exemption ENCFF702FLW bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 2442276350 ENCODE Processing Pipeline d77a0e846df06320f3341e44b747cbdb https://www.encodeproject.org/files/ENCFF702FLW/@@download/ENCFF702FLW.bigWig GRCh38 released antibody characterized with exemption ENCFF716RRR bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 1899034742 ENCODE Processing Pipeline f405269ad3dc45890647eab7bfb81622 https://www.encodeproject.org/files/ENCFF716RRR/@@download/ENCFF716RRR.bigWig GRCh38 released antibody characterized with exemption ENCFF499CNJ bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 1384439724 ENCODE Processing Pipeline 6f483748958fe92183a99f878caf8e07 https://www.encodeproject.org/files/ENCFF499CNJ/@@download/ENCFF499CNJ.bigWig GRCh38 released antibody characterized with exemption ENCFF928WEU bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 2520307104 ENCODE Processing Pipeline 6ec76aa14d9f0bed12cec84571b9a0d0 https://www.encodeproject.org/files/ENCFF928WEU/@@download/ENCFF928WEU.bigWig GRCh38 released antibody characterized with exemption ENCFF451PUV bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 7072204 ENCODE Processing Pipeline ebe14b71e6ccc1700be43fadbf8e65b3 https://www.encodeproject.org/files/ENCFF451PUV/@@download/ENCFF451PUV.bed.gz GRCh38 released antibody characterized with exemption ENCFF974RFL bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 7077178 ENCODE Processing Pipeline 33f5fe0ea6a4f2cf60aeb022261d85f9 https://www.encodeproject.org/files/ENCFF974RFL/@@download/ENCFF974RFL.bed.gz GRCh38 released antibody characterized with exemption ENCFF981RMT bed narrowPeak peaks and background as input for IDR ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 7187143 ENCODE Processing Pipeline fef0091e9e4b01d5c630ea63193f7047 https://www.encodeproject.org/files/ENCFF981RMT/@@download/ENCFF981RMT.bed.gz GRCh38 released antibody characterized with exemption ENCFF148EMM bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF451PUV 12493764 ENCODE Processing Pipeline 95e027990e39f1253d36e1b8ed0679c1 https://www.encodeproject.org/files/ENCFF148EMM/@@download/ENCFF148EMM.bigBed GRCh38 released antibody characterized with exemption ENCFF860VYR bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF974RFL 12801368 ENCODE Processing Pipeline 40f699b01d68822e73776ce285a9f1cb https://www.encodeproject.org/files/ENCFF860VYR/@@download/ENCFF860VYR.bigBed GRCh38 released antibody characterized with exemption ENCFF311SDK bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF981RMT 12520280 ENCODE Processing Pipeline a7391a24895cdd2878c29515295cdfeb https://www.encodeproject.org/files/ENCFF311SDK/@@download/ENCFF311SDK.bigBed GRCh38 released antibody characterized with exemption ENCFF143KGD bed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF451PUV, ENCFF974RFL, ENCFF981RMT 317766 ENCODE Processing Pipeline d8d92a68fc2493a0a1524d4b12d51af0 https://www.encodeproject.org/files/ENCFF143KGD/@@download/ENCFF143KGD.bed.gz GRCh38 released antibody characterized with exemption ENCFF272HGN bigBed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF143KGD 645075 ENCODE Processing Pipeline 52aa05800753eda9c9d24b362ac5caa4 https://www.encodeproject.org/files/ENCFF272HGN/@@download/ENCFF272HGN.bigBed GRCh38 released antibody characterized with exemption ENCFF442WRJ bed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF451PUV, ENCFF974RFL, ENCFF981RMT 411361 ENCODE Processing Pipeline 4935ad50f0fd9980285f57471ae6fca5 https://www.encodeproject.org/files/ENCFF442WRJ/@@download/ENCFF442WRJ.bed.gz GRCh38 released antibody characterized with exemption ENCFF392KBC bigBed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF442WRJ 787214 ENCODE Processing Pipeline 00d10a8f5b1493e8df61e26d1d004d43 https://www.encodeproject.org/files/ENCFF392KBC/@@download/ENCFF392KBC.bigBed GRCh38 released antibody characterized with exemption ENCFF441EMM fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 1 ENCFF239WHZ 11315624661 Michael Snyder, Stanford 8065bc43668dd15742b2f00e745fe190 https://www.encodeproject.org/files/ENCFF441EMM/@@download/ENCFF441EMM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF239WHZ fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 2 ENCFF441EMM 11719318502 Michael Snyder, Stanford c7477950e610260f08dbb36316a5d590 https://www.encodeproject.org/files/ENCFF239WHZ/@@download/ENCFF239WHZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF277DLT fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 1 ENCFF245NVS 3202330665 Michael Snyder, Stanford 81f2701fc881ac7a4a9d96bbb22a4dde https://www.encodeproject.org/files/ENCFF277DLT/@@download/ENCFF277DLT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF245NVS fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 2 ENCFF277DLT 3600069170 Michael Snyder, Stanford d86c414ee1d27bc0f5e92a668a112fd6 https://www.encodeproject.org/files/ENCFF245NVS/@@download/ENCFF245NVS.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF128KAH bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF643CGH 6217909376 ENCODE Processing Pipeline f3d3113e21bd11fbf8b2c1bceb52e1c3 https://www.encodeproject.org/files/ENCFF128KAH/@@download/ENCFF128KAH.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF697SUP bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF807MUK 6217219741 ENCODE Processing Pipeline d20d368b6b3616157135d3fb25b40fd8 https://www.encodeproject.org/files/ENCFF697SUP/@@download/ENCFF697SUP.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF542XCL bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF643CGH 3564823673 ENCODE Processing Pipeline cece36e3fecae4aa34e02bb8893ebaf4 https://www.encodeproject.org/files/ENCFF542XCL/@@download/ENCFF542XCL.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF005DDP bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF807MUK 3558174404 ENCODE Processing Pipeline 9edf4f5bf4d931d0bcf43ed088cf820e https://www.encodeproject.org/files/ENCFF005DDP/@@download/ENCFF005DDP.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF256ACA bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF643CGH 19311477430 ENCODE Processing Pipeline 76f610d370464d0f5b6badf6409d5ecf https://www.encodeproject.org/files/ENCFF256ACA/@@download/ENCFF256ACA.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF004TTQ bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF807MUK 19331361872 ENCODE Processing Pipeline 30134e38729c244800e8c17a04eeca3e https://www.encodeproject.org/files/ENCFF004TTQ/@@download/ENCFF004TTQ.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF549AQZ bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF643CGH 6689524769 ENCODE Processing Pipeline 1edce715a895ae4bf47aa5163c9a57b0 https://www.encodeproject.org/files/ENCFF549AQZ/@@download/ENCFF549AQZ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF585JBT bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF807MUK 6672108719 ENCODE Processing Pipeline 365c67c7d579471808a2827966314632 https://www.encodeproject.org/files/ENCFF585JBT/@@download/ENCFF585JBT.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF710GGG bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 2370725891 ENCODE Processing Pipeline 77bb5e006bdd879497263185e8cbc7cf https://www.encodeproject.org/files/ENCFF710GGG/@@download/ENCFF710GGG.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF061QWC bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF097DQG 13374366 ENCODE Processing Pipeline 4daab3071bd2baceb90d7601a575c851 https://www.encodeproject.org/files/ENCFF061QWC/@@download/ENCFF061QWC.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF136JRT bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF364EJS 13124860 ENCODE Processing Pipeline 41c9d21632d05ab188bcbe0ff9e3d402 https://www.encodeproject.org/files/ENCFF136JRT/@@download/ENCFF136JRT.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF341NXW bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 1230473048 ENCODE Processing Pipeline fda1e4b3e30fd1d073f3658267eec304 https://www.encodeproject.org/files/ENCFF341NXW/@@download/ENCFF341NXW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF097DQG bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 7218875 ENCODE Processing Pipeline b4c7253ba55d5dbd073774ca383c990d https://www.encodeproject.org/files/ENCFF097DQG/@@download/ENCFF097DQG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF610SRE bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF307ZMU 13311065 ENCODE Processing Pipeline af88d82d3f091daa48dd67c4a2288826 https://www.encodeproject.org/files/ENCFF610SRE/@@download/ENCFF610SRE.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF644PZA bigBed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF230RZX 1597727 ENCODE Processing Pipeline 9549e29c62f9b7fb68cf90d91f1f7c39 https://www.encodeproject.org/files/ENCFF644PZA/@@download/ENCFF644PZA.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF248AYM bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 1670206920 ENCODE Processing Pipeline 7aba94998294dbd251278f7cea1edade https://www.encodeproject.org/files/ENCFF248AYM/@@download/ENCFF248AYM.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF364EJS bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 7014191 ENCODE Processing Pipeline 87a343e962424d3b07ed2c295d95bafa https://www.encodeproject.org/files/ENCFF364EJS/@@download/ENCFF364EJS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF307ZMU bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 7324633 ENCODE Processing Pipeline 107272410502da075b976ef42ff8b6ed https://www.encodeproject.org/files/ENCFF307ZMU/@@download/ENCFF307ZMU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF623FAW bed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF097DQG, ENCFF307ZMU, ENCFF364EJS, ENCFF419RSJ 766380 ENCODE Processing Pipeline 72ccb17b5552db1119c0b11fe3169e3e https://www.encodeproject.org/files/ENCFF623FAW/@@download/ENCFF623FAW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF153AVS bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 2179081635 ENCODE Processing Pipeline 8018cdfa70b2883b5d5ddf65b4d83fe0 https://www.encodeproject.org/files/ENCFF153AVS/@@download/ENCFF153AVS.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF596FOJ bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 1021392072 ENCODE Processing Pipeline 27d01efe497de2eb94450296734723bc https://www.encodeproject.org/files/ENCFF596FOJ/@@download/ENCFF596FOJ.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF676GTP bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 2560315695 ENCODE Processing Pipeline f4469c62ab7b98d9e427649f8f307b12 https://www.encodeproject.org/files/ENCFF676GTP/@@download/ENCFF676GTP.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF230RZX bed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF097DQG, ENCFF307ZMU, ENCFF364EJS, ENCFF419RSJ 703284 ENCODE Processing Pipeline 8b8e2270112a22b3a88407493a23cf39 https://www.encodeproject.org/files/ENCFF230RZX/@@download/ENCFF230RZX.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF649YFK bigBed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF623FAW 1726334 ENCODE Processing Pipeline d69fd2d84df130e06eb92b0c5fefa119 https://www.encodeproject.org/files/ENCFF649YFK/@@download/ENCFF649YFK.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF779NGV bigBed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF006MAM 1564423 ENCODE Processing Pipeline dbc73cae4f08d2d7827199a9bfac9fbd https://www.encodeproject.org/files/ENCFF779NGV/@@download/ENCFF779NGV.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF911BYP bed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF252PIK, ENCFF934HHY, ENCFF952CNK 737439 ENCODE Processing Pipeline 307e9ca674be889ee21a25aefce3e3d2 https://www.encodeproject.org/files/ENCFF911BYP/@@download/ENCFF911BYP.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF804BYW bigBed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF911BYP 1355882 ENCODE Processing Pipeline 05c7de5cd4d4936f014a5af57665ea8d https://www.encodeproject.org/files/ENCFF804BYW/@@download/ENCFF804BYW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF952CNK bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 7118963 ENCODE Processing Pipeline 694a9800274d934f32a35573bd56f166 https://www.encodeproject.org/files/ENCFF952CNK/@@download/ENCFF952CNK.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF618HFG bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2155394348 ENCODE Processing Pipeline 8399323608ec55625d8f8715fabf241f https://www.encodeproject.org/files/ENCFF618HFG/@@download/ENCFF618HFG.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF637YIA bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2520937440 ENCODE Processing Pipeline 3ef8a8ff030360e4417dcbaaa14acbf5 https://www.encodeproject.org/files/ENCFF637YIA/@@download/ENCFF637YIA.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF395XJK bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2129060789 ENCODE Processing Pipeline 1ac899447d94b8a8d0451843bbcf8356 https://www.encodeproject.org/files/ENCFF395XJK/@@download/ENCFF395XJK.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF934HHY bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 7215031 ENCODE Processing Pipeline a06da6d17993a7d37f08181186114c24 https://www.encodeproject.org/files/ENCFF934HHY/@@download/ENCFF934HHY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF115LZL bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF952CNK 13238622 ENCODE Processing Pipeline 9eb35e07b046ec912bfbfe5f55016e78 https://www.encodeproject.org/files/ENCFF115LZL/@@download/ENCFF115LZL.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF185QCW bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2334143032 ENCODE Processing Pipeline 19ca658411a3c4309f8074ecce70f4b8 https://www.encodeproject.org/files/ENCFF185QCW/@@download/ENCFF185QCW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF406CMA bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 1229220190 ENCODE Processing Pipeline d6f3800b18b91bc04f959b0291477e44 https://www.encodeproject.org/files/ENCFF406CMA/@@download/ENCFF406CMA.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF252PIK bed narrowPeak peaks and background as input for IDR ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 7255430 ENCODE Processing Pipeline bc0bfc72a7d88cb2ae92bc33c57848d5 https://www.encodeproject.org/files/ENCFF252PIK/@@download/ENCFF252PIK.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF253PBZ bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF934HHY 13363507 ENCODE Processing Pipeline 30f266ee4a8f7311b40952110ac0eb49 https://www.encodeproject.org/files/ENCFF253PBZ/@@download/ENCFF253PBZ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF006MAM bed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF252PIK, ENCFF934HHY, ENCFF952CNK 681596 ENCODE Processing Pipeline d751a1feaf091e3d0446985f75800516 https://www.encodeproject.org/files/ENCFF006MAM/@@download/ENCFF006MAM.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF555BNM bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 1157672969 ENCODE Processing Pipeline f54d87b643f3c68dd6f7576a55577925 https://www.encodeproject.org/files/ENCFF555BNM/@@download/ENCFF555BNM.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF857XEV bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF252PIK 13225974 ENCODE Processing Pipeline e70a06b6a4fadb38b04d52ee7e87fe23 https://www.encodeproject.org/files/ENCFF857XEV/@@download/ENCFF857XEV.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody, severe bottlenecking ENCFF649MUT fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF079AYE 6857462476 Michael Snyder, Stanford 8fa0a31390261d4a9f8f3c5e964b9dc7 SRA:SRR5111374 https://www.encodeproject.org/files/ENCFF649MUT/@@download/ENCFF649MUT.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF079AYE fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF649MUT 6391789569 Michael Snyder, Stanford 156bba2bf674e8195b4794d3777eecea SRA:SRR5111374 https://www.encodeproject.org/files/ENCFF079AYE/@@download/ENCFF079AYE.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF973RUL fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF271TDT 1483608175 Michael Snyder, Stanford ee82e57492989e4f118a8bf848af7daf SRA:SRR5111373 https://www.encodeproject.org/files/ENCFF973RUL/@@download/ENCFF973RUL.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF271TDT fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF973RUL 1403541887 Michael Snyder, Stanford 58519be378d76b9949efdc79dfbda63b SRA:SRR5111373 https://www.encodeproject.org/files/ENCFF271TDT/@@download/ENCFF271TDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF652NWL bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF643CGH, ENCFF973RUL 2884938764 ENCODE Processing Pipeline 338e02f45aef491be101110a2638047a https://www.encodeproject.org/files/ENCFF652NWL/@@download/ENCFF652NWL.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF686LHL bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF807MUK, ENCFF973RUL 2883696795 ENCODE Processing Pipeline 17c0d78f31db64de6f52d3b44ec5c3de https://www.encodeproject.org/files/ENCFF686LHL/@@download/ENCFF686LHL.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF888AIA bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF643CGH, ENCFF973RUL 1982534522 ENCODE Processing Pipeline 64c401591fb1e7359d828ee854358cc7 https://www.encodeproject.org/files/ENCFF888AIA/@@download/ENCFF888AIA.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF955NYD bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF807MUK, ENCFF973RUL 1979062499 ENCODE Processing Pipeline 58b66f78549e8e8631cac917354bbb71 https://www.encodeproject.org/files/ENCFF955NYD/@@download/ENCFF955NYD.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF029UNK bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF643CGH, ENCFF649MUT 11282277692 ENCODE Processing Pipeline 651692b6f397d097c551ce215b9965d0 https://www.encodeproject.org/files/ENCFF029UNK/@@download/ENCFF029UNK.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF869WVJ bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF649MUT, ENCFF807MUK 11284170677 ENCODE Processing Pipeline df93096c954b67b63784f7c526527832 https://www.encodeproject.org/files/ENCFF869WVJ/@@download/ENCFF869WVJ.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF975GPP bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF649MUT, ENCFF807MUK 6751156691 ENCODE Processing Pipeline 217dbd0e7f656442d78d1c068589f907 https://www.encodeproject.org/files/ENCFF975GPP/@@download/ENCFF975GPP.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF178EBR bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF643CGH, ENCFF649MUT 6761714096 ENCODE Processing Pipeline dd4f27a425c9c572443ee8b0935657ca https://www.encodeproject.org/files/ENCFF178EBR/@@download/ENCFF178EBR.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF696EXT bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 2386991407 ENCODE Processing Pipeline 8b463cd983be71e5d7359f2d3268ebf6 https://www.encodeproject.org/files/ENCFF696EXT/@@download/ENCFF696EXT.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF281BES bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 859000947 ENCODE Processing Pipeline 923668dbb80ed7e69a86a4879b796006 https://www.encodeproject.org/files/ENCFF281BES/@@download/ENCFF281BES.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF235IVF bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 2219026246 ENCODE Processing Pipeline 0383fa0514ee370106bfc0c40d10ddf7 https://www.encodeproject.org/files/ENCFF235IVF/@@download/ENCFF235IVF.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF653WYH bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 2259158581 ENCODE Processing Pipeline 585fa0d5aadcc5eb260e1478d72e0ce3 https://www.encodeproject.org/files/ENCFF653WYH/@@download/ENCFF653WYH.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF466GWH bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 770823474 ENCODE Processing Pipeline 7aa9d507623732064683e47019259b15 https://www.encodeproject.org/files/ENCFF466GWH/@@download/ENCFF466GWH.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF021OHP bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 2436571677 ENCODE Processing Pipeline 5775e3d7fe2ecc6e7d382f4c21ab1f5b https://www.encodeproject.org/files/ENCFF021OHP/@@download/ENCFF021OHP.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF593KRH bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 7255853 ENCODE Processing Pipeline 18235deea7ec222cc38f7cf3a732ed11 https://www.encodeproject.org/files/ENCFF593KRH/@@download/ENCFF593KRH.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF264HQZ bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF593KRH 13197655 ENCODE Processing Pipeline a75571d41d5493d61a8d90ca9cc32165 https://www.encodeproject.org/files/ENCFF264HQZ/@@download/ENCFF264HQZ.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF417RTA bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF494SRY 13213619 ENCODE Processing Pipeline 1f775b6df48261187cc16f439ea0ed2c https://www.encodeproject.org/files/ENCFF417RTA/@@download/ENCFF417RTA.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF494SRY bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 6674264 ENCODE Processing Pipeline 505cee6a36e8bd3c4031c86ccbe29baf https://www.encodeproject.org/files/ENCFF494SRY/@@download/ENCFF494SRY.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF407KWG bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 7272033 ENCODE Processing Pipeline 5befc8a42e81289e98fcff6c4b10823f https://www.encodeproject.org/files/ENCFF407KWG/@@download/ENCFF407KWG.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF966RPL bed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF407KWG, ENCFF494SRY, ENCFF593KRH 789765 ENCODE Processing Pipeline 44b35b24f90013b12bb762c2c84bd65c https://www.encodeproject.org/files/ENCFF966RPL/@@download/ENCFF966RPL.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF249RJN bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF407KWG 13125446 ENCODE Processing Pipeline ea3e0df92c9cd5f7f7840b17dae0b77a https://www.encodeproject.org/files/ENCFF249RJN/@@download/ENCFF249RJN.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF197TYK bed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF407KWG, ENCFF494SRY, ENCFF593KRH 699697 ENCODE Processing Pipeline ab295d1f6e13de16b0486d14c6f2b109 https://www.encodeproject.org/files/ENCFF197TYK/@@download/ENCFF197TYK.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF361YNB bigBed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF315RFC 1321046 ENCODE Processing Pipeline e55d20aea781766441bda6f99c269e0a https://www.encodeproject.org/files/ENCFF361YNB/@@download/ENCFF361YNB.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking mismatched status ENCFF697OZC bigBed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF534OTG 1453485 ENCODE Processing Pipeline 324b6f0edc7c179ace120888075a2cb0 https://www.encodeproject.org/files/ENCFF697OZC/@@download/ENCFF697OZC.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking mismatched status ENCFF821ABV bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 2235929229 ENCODE Processing Pipeline 086c2a00ef08e812b28853a8d64ac73e https://www.encodeproject.org/files/ENCFF821ABV/@@download/ENCFF821ABV.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF671TFA bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 938936704 ENCODE Processing Pipeline 13c161eef4a29f22e2eee0491a19254a https://www.encodeproject.org/files/ENCFF671TFA/@@download/ENCFF671TFA.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF349IDH bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 2376820857 ENCODE Processing Pipeline 2f20df7bafd4ef11a7bd1abe3eb2a253 https://www.encodeproject.org/files/ENCFF349IDH/@@download/ENCFF349IDH.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF903XMZ bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 2248169771 ENCODE Processing Pipeline af6744f6d3a1b60fabe525578c58ffc8 https://www.encodeproject.org/files/ENCFF903XMZ/@@download/ENCFF903XMZ.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF297KCJ bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 769393386 ENCODE Processing Pipeline 3d22bdf39c343e5e0f9f93abf5fa771b https://www.encodeproject.org/files/ENCFF297KCJ/@@download/ENCFF297KCJ.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF353YGE bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 2425481524 ENCODE Processing Pipeline a78b66f6a74b81d0b6f3498b193a2da0 https://www.encodeproject.org/files/ENCFF353YGE/@@download/ENCFF353YGE.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF955MTU bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 6576463 ENCODE Processing Pipeline 88774ac4d159e8b3ba31ba3e0d2b69c9 https://www.encodeproject.org/files/ENCFF955MTU/@@download/ENCFF955MTU.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF585OMK bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF467TNA 13191310 ENCODE Processing Pipeline 72de19bffff446b4b405377f31cd8a3e https://www.encodeproject.org/files/ENCFF585OMK/@@download/ENCFF585OMK.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF794YZP bigBed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF006OFJ 1667422 ENCODE Processing Pipeline b6bb89e6567c23c17030b64394cc20b5 https://www.encodeproject.org/files/ENCFF794YZP/@@download/ENCFF794YZP.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF467TNA bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 7331128 ENCODE Processing Pipeline 921dd0ff2a509280aad3f4f3027f901f https://www.encodeproject.org/files/ENCFF467TNA/@@download/ENCFF467TNA.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF587POH bed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF467TNA, ENCFF590DZM, ENCFF955MTU 820188 ENCODE Processing Pipeline 29d16fcad300286df212197e84c30e14 https://www.encodeproject.org/files/ENCFF587POH/@@download/ENCFF587POH.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF006OFJ bed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF467TNA, ENCFF590DZM, ENCFF955MTU 717913 ENCODE Processing Pipeline 7ddf9851ebef8a41e85cf4b0ab25c18a https://www.encodeproject.org/files/ENCFF006OFJ/@@download/ENCFF006OFJ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF590DZM bed narrowPeak peaks and background as input for IDR ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 7255148 ENCODE Processing Pipeline 4f83e830b0ca4144fcc096c0140b6d50 https://www.encodeproject.org/files/ENCFF590DZM/@@download/ENCFF590DZM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF784JSA bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF590DZM 13205263 ENCODE Processing Pipeline 241604c74de6fe33e0b0224f3b17c570 https://www.encodeproject.org/files/ENCFF784JSA/@@download/ENCFF784JSA.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF781QQN bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF955MTU 13171830 ENCODE Processing Pipeline fe43a044d3dfc8022085b7ac50b22871 https://www.encodeproject.org/files/ENCFF781QQN/@@download/ENCFF781QQN.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF706RST bigBed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF587POH 1852454 ENCODE Processing Pipeline d5b5c7a93ff99e17b9620821fd862e19 https://www.encodeproject.org/files/ENCFF706RST/@@download/ENCFF706RST.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF000VYR bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 1 442582835 Michael Snyder, Stanford 8c17c80a378815ea05c0a73de69df08f https://www.encodeproject.org/files/ENCFF000VYR/@@download/ENCFF000VYR.bam hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF000VYS bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE ENCFF001VER 2455379 Michael Snyder, Stanford 76133c9a6031e1fb5f888fe945b901fd https://www.encodeproject.org/files/ENCFF000VYS/@@download/ENCFF000VYS.bigBed hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000VYT fastq reads ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 1 36 single-ended 785027702 Michael Snyder, Stanford b98d8bae0103314e5c1035f6d8cd9337 https://www.encodeproject.org/files/ENCFF000VYT/@@download/ENCFF000VYT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWD/ released low read depth, inconsistent control read length, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000VYV fastq reads ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 1 36 single-ended 1508063156 Michael Snyder, Stanford 6c5e675de71263e86644e9a2e353c3aa https://www.encodeproject.org/files/ENCFF000VYV/@@download/ENCFF000VYV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWK/ released low read depth, low read length, inconsistent control read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000VYX bigWig signal ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 417115959 Michael Snyder, Stanford 0b1cfff596cc5313ff65f2450038b142 https://www.encodeproject.org/files/ENCFF000VYX/@@download/ENCFF000VYX.bigWig hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF000VYY bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 1 676608455 Michael Snyder, Stanford 214cf1a9dfced6421b60c56334e5e5f9 https://www.encodeproject.org/files/ENCFF000VYY/@@download/ENCFF000VYY.bam hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF001VER bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1002998 Michael Snyder, Stanford bd0d6c9e0d56a1b8a0e1d4b64264e724 https://www.encodeproject.org/files/ENCFF001VER/@@download/ENCFF001VER.bed.gz hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF002COY bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 455182 ENCODE Consortium Analysis Working Group 95b92577da32551f9fd9cf9815f0c2db https://www.encodeproject.org/files/ENCFF002COY/@@download/ENCFF002COY.bed.gz hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF348KWG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE ENCFF002COY 1094038 ENCODE Consortium 05aaa29ab43c0a3d48e276d270c18425 https://www.encodeproject.org/files/ENCFF348KWG/@@download/ENCFF348KWG.bigBed hg19 archived low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF056TXR bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF643CGH 836508692 ENCODE Processing Pipeline 68e818709c2220ecda382a08c19a6c71 https://www.encodeproject.org/files/ENCFF056TXR/@@download/ENCFF056TXR.bam GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF707VJV bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF643CGH 1469282525 ENCODE Processing Pipeline 6d5fa934dba8102cd64f2c816615d8e9 https://www.encodeproject.org/files/ENCFF707VJV/@@download/ENCFF707VJV.bam GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF377YXP bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF643CGH 546985881 ENCODE Processing Pipeline 64687a899b5ccec376e660db9b185b95 https://www.encodeproject.org/files/ENCFF377YXP/@@download/ENCFF377YXP.bam GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF169JOK bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF643CGH 863716625 ENCODE Processing Pipeline 6745d10dd6906d628e012d20ad875700 https://www.encodeproject.org/files/ENCFF169JOK/@@download/ENCFF169JOK.bam GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF305VDY bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF807MUK 833091801 ENCODE Processing Pipeline 96c1e40e04c93ba5e49480db67f28ca9 https://www.encodeproject.org/files/ENCFF305VDY/@@download/ENCFF305VDY.bam hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF128IWG bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF807MUK 1463735702 ENCODE Processing Pipeline 2e0a6d0f9ee17800b1024933da87866c https://www.encodeproject.org/files/ENCFF128IWG/@@download/ENCFF128IWG.bam hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF387QOE bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF807MUK 546803975 ENCODE Processing Pipeline bc89c87588aea2505e84a9ab9bb02e09 https://www.encodeproject.org/files/ENCFF387QOE/@@download/ENCFF387QOE.bam hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF287GWT bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF807MUK 862966913 ENCODE Processing Pipeline 17e60a696c80d42940156a230af14c4c https://www.encodeproject.org/files/ENCFF287GWT/@@download/ENCFF287GWT.bam hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF776GTW bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 4553274 ENCODE Processing Pipeline 5169acff0ca163969d36b2a38025f5ab https://www.encodeproject.org/files/ENCFF776GTW/@@download/ENCFF776GTW.bed.gz hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF160GED bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 75517175 ENCODE Processing Pipeline b6587dc5585e3139c275a464356a3cf1 https://www.encodeproject.org/files/ENCFF160GED/@@download/ENCFF160GED.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF840ZJM bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 524744476 ENCODE Processing Pipeline 3fbb7f4223b3232424720664d8ae46e7 https://www.encodeproject.org/files/ENCFF840ZJM/@@download/ENCFF840ZJM.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF704CGT bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF603MKX 13142502 ENCODE Processing Pipeline e122c4f3fbf40c9355ef6b482916e542 https://www.encodeproject.org/files/ENCFF704CGT/@@download/ENCFF704CGT.bigBed hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF861YUL bed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF603MKX, ENCFF711VHK, ENCFF776GTW 324464 ENCODE Processing Pipeline 756f355b738795e346faec1ef0cc8ac2 https://www.encodeproject.org/files/ENCFF861YUL/@@download/ENCFF861YUL.bed.gz hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF603MKX bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 5242937 ENCODE Processing Pipeline 8743988b09847ce263fade36136696c9 https://www.encodeproject.org/files/ENCFF603MKX/@@download/ENCFF603MKX.bed.gz hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF651XZU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF861YUL 656354 ENCODE Processing Pipeline 8065570dd4ae9c9f2a01764665b48d7d https://www.encodeproject.org/files/ENCFF651XZU/@@download/ENCFF651XZU.bigBed hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF346YHE bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 169113899 ENCODE Processing Pipeline a58a4404958953275e473dd2920c100f https://www.encodeproject.org/files/ENCFF346YHE/@@download/ENCFF346YHE.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF673PVX bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 246313046 ENCODE Processing Pipeline a8ff50a3a59d907ae0a05da62282b4e4 https://www.encodeproject.org/files/ENCFF673PVX/@@download/ENCFF673PVX.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF308XOG bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 158726788 ENCODE Processing Pipeline d222e7f6e97cfe2013251989fc096d23 https://www.encodeproject.org/files/ENCFF308XOG/@@download/ENCFF308XOG.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF994AHP bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 293314547 ENCODE Processing Pipeline 6f700158df974bb055306c40862dc853 https://www.encodeproject.org/files/ENCFF994AHP/@@download/ENCFF994AHP.bigWig hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF711VHK bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 4587819 ENCODE Processing Pipeline c85d0aa485fd67cd66b762d7c70136fa https://www.encodeproject.org/files/ENCFF711VHK/@@download/ENCFF711VHK.bed.gz hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF185RQE bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF711VHK 10396509 ENCODE Processing Pipeline 9181535c57e6f1c245136e7042a9104c https://www.encodeproject.org/files/ENCFF185RQE/@@download/ENCFF185RQE.bigBed hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF751HMO bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF776GTW 10652137 ENCODE Processing Pipeline c8c111a46b7fe62f7fd486d7c0f5959c https://www.encodeproject.org/files/ENCFF751HMO/@@download/ENCFF751HMO.bigBed hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF446WBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF079ZWK 951762 ENCODE Processing Pipeline b2f413937d140b55276480465f325bcf https://www.encodeproject.org/files/ENCFF446WBQ/@@download/ENCFF446WBQ.bigBed hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF079ZWK bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF603MKX, ENCFF711VHK, ENCFF776GTW 418493 ENCODE Processing Pipeline 6cacbee975f59501030c8b8587227808 https://www.encodeproject.org/files/ENCFF079ZWK/@@download/ENCFF079ZWK.bed.gz hg19 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF978JRC bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 75469671 ENCODE Processing Pipeline 4f5bb6c3261db27d10e82cb3f9d3026f https://www.encodeproject.org/files/ENCFF978JRC/@@download/ENCFF978JRC.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF279ADX bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 157896794 ENCODE Processing Pipeline 587b9e7b986a06dbb84a6514258e7889 https://www.encodeproject.org/files/ENCFF279ADX/@@download/ENCFF279ADX.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF868DOL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF380XEC 654698 ENCODE Processing Pipeline 703bc01035fbbd7c1e3780d73749b5d7 https://www.encodeproject.org/files/ENCFF868DOL/@@download/ENCFF868DOL.bigBed GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF054BLU bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 169135804 ENCODE Processing Pipeline 0186622d1ac6f4058a8b05856f7560e1 https://www.encodeproject.org/files/ENCFF054BLU/@@download/ENCFF054BLU.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF988OXK bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 292248676 ENCODE Processing Pipeline 6427cf690d648b11bc920c5eba41ff4c https://www.encodeproject.org/files/ENCFF988OXK/@@download/ENCFF988OXK.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF482UOW bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 521903940 ENCODE Processing Pipeline 6f252526971a58b0ffe92d109fa1245f https://www.encodeproject.org/files/ENCFF482UOW/@@download/ENCFF482UOW.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF939WFC bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 4407395 ENCODE Processing Pipeline 904460e9677a85ca9388788708804bae https://www.encodeproject.org/files/ENCFF939WFC/@@download/ENCFF939WFC.bed.gz GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF040XAI bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 5236138 ENCODE Processing Pipeline 8e259643a3537e00c6d2caa4acd68691 https://www.encodeproject.org/files/ENCFF040XAI/@@download/ENCFF040XAI.bed.gz GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF968DNA bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF134IKR 10653752 ENCODE Processing Pipeline 2cac61e000bcc5c5783016e4daaf7ca3 https://www.encodeproject.org/files/ENCFF968DNA/@@download/ENCFF968DNA.bigBed GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF199HGX bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI, ENCFF134IKR, ENCFF419RSJ, ENCFF939WFC 418561 ENCODE Processing Pipeline dc24747ebafc9f82aa0c594836157431 https://www.encodeproject.org/files/ENCFF199HGX/@@download/ENCFF199HGX.bed.gz GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF941ZQX bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 246673883 ENCODE Processing Pipeline 3c435bd7df6e8caeb60a57a31fa73212 https://www.encodeproject.org/files/ENCFF941ZQX/@@download/ENCFF941ZQX.bigWig GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF134IKR bed narrowPeak peaks and background as input for IDR ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 4554328 ENCODE Processing Pipeline 2ddc4d0bcb386a2ddd25af0893194e2f https://www.encodeproject.org/files/ENCFF134IKR/@@download/ENCFF134IKR.bed.gz GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF380XEC bed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI, ENCFF134IKR, ENCFF419RSJ, ENCFF939WFC 323170 ENCODE Processing Pipeline 285284d067a9fa84f6ec7d69609aad33 https://www.encodeproject.org/files/ENCFF380XEC/@@download/ENCFF380XEC.bed.gz GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF264NLR bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF939WFC 10177043 ENCODE Processing Pipeline 59dd14fe4de9d1107fa66e979ae1544f https://www.encodeproject.org/files/ENCFF264NLR/@@download/ENCFF264NLR.bigBed GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF964UQQ bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI 13139489 ENCODE Processing Pipeline e4a4f4718401fb801d31b63323720fe9 https://www.encodeproject.org/files/ENCFF964UQQ/@@download/ENCFF964UQQ.bigBed GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF439UHS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF199HGX 951348 ENCODE Processing Pipeline 3efc8acd79f2d596c07db9406acd95eb https://www.encodeproject.org/files/ENCFF439UHS/@@download/ENCFF439UHS.bigBed GRCh38 released low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000OGR bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHD 613483194 Richard Myers, HAIB 24a2ca939da55ffe2958023eeffee74f https://www.encodeproject.org/files/ENCFF000OGR/@@download/ENCFF000OGR.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGS bigBed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZM 255525 Richard Myers, HAIB af4e1b9327cd084639919d2e768ad785 https://www.encodeproject.org/files/ENCFF000OGS/@@download/ENCFF000OGS.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGT bigBed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZN 215469 Richard Myers, HAIB 0ea13b70bd207cb37ad075ea61bb9954 https://www.encodeproject.org/files/ENCFF000OGT/@@download/ENCFF000OGT.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGU bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHN 1391925461 Richard Myers, HAIB 1e8c35412f97c002d1f86d2cc784d48b https://www.encodeproject.org/files/ENCFF000OGU/@@download/ENCFF000OGU.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGW bigWig raw signal ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 26954765 Richard Myers, HAIB 61b1d1adab0e954fe654d1c8526d291c https://www.encodeproject.org/files/ENCFF000OGW/@@download/ENCFF000OGW.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGX bigWig raw signal ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 51501435 Richard Myers, HAIB 08ac028c8f96fa4fe9c5e8b9bdf15395 https://www.encodeproject.org/files/ENCFF000OGX/@@download/ENCFF000OGX.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OHD fastq reads ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1342435398 Richard Myers, HAIB 6ac3ffa3d0a83540737df8b93631025a https://www.encodeproject.org/files/ENCFF000OHD/@@download/ENCFF000OHD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, inconsistent control read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OHN fastq reads ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 25 single-ended 379088159 Richard Myers, HAIB 0f47495c79c51b624861af04ab420b56 https://www.encodeproject.org/files/ENCFF000OHN/@@download/ENCFF000OHN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF001TZM bed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 121809 Richard Myers, HAIB a02761e197f19db12dbeec83a26b0f35 https://www.encodeproject.org/files/ENCFF001TZM/@@download/ENCFF001TZM.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF001TZN bed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 95852 Richard Myers, HAIB f8b69275bef0e183cd9e21d590d15b30 https://www.encodeproject.org/files/ENCFF001TZN/@@download/ENCFF001TZN.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF002CIB bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 213517 ENCODE Consortium Analysis Working Group 1bf2991d99a656a47e86871db2d854ab https://www.encodeproject.org/files/ENCFF002CIB/@@download/ENCFF002CIB.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF595QNM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIB 459056 ENCODE Consortium 81bf9f199d858f0f285b16f1de7766e2 https://www.encodeproject.org/files/ENCFF595QNM/@@download/ENCFF595QNM.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF798UJL bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF807MUK 585074841 ENCODE Processing Pipeline f48c8ba9b764f79a4cc2c701a61d8d0b https://www.encodeproject.org/files/ENCFF798UJL/@@download/ENCFF798UJL.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF899CBZ bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF807MUK 252147042 ENCODE Processing Pipeline fcb27e6620808b6aeb3f427af5f8cdda https://www.encodeproject.org/files/ENCFF899CBZ/@@download/ENCFF899CBZ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF898NMW bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF643CGH 586651835 ENCODE Processing Pipeline b9df53886d82e602f66dc9e1050d466f https://www.encodeproject.org/files/ENCFF898NMW/@@download/ENCFF898NMW.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF737VAT bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF643CGH 255029592 ENCODE Processing Pipeline 85e8d4a24f36fd3a146fd9ef780021ec https://www.encodeproject.org/files/ENCFF737VAT/@@download/ENCFF737VAT.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF616RGW bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF643CGH 1278803126 ENCODE Processing Pipeline 1ba98d49432730069089a970b2319c06 https://www.encodeproject.org/files/ENCFF616RGW/@@download/ENCFF616RGW.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF845IBA bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF807MUK 1279036426 ENCODE Processing Pipeline ae3eaa8ab858aa486d5890d5ce47fec6 https://www.encodeproject.org/files/ENCFF845IBA/@@download/ENCFF845IBA.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF281OFW bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF807MUK 323777819 ENCODE Processing Pipeline cd1c00bd3bccf185c128a98ff22e1979 https://www.encodeproject.org/files/ENCFF281OFW/@@download/ENCFF281OFW.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF074OYP bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF643CGH 326611157 ENCODE Processing Pipeline 9803b0e54dd2d4caf6e288471a4fb4ab https://www.encodeproject.org/files/ENCFF074OYP/@@download/ENCFF074OYP.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF646IET bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 531292140 ENCODE Processing Pipeline cb99407c4fe8aae6865429df28708a94 https://www.encodeproject.org/files/ENCFF646IET/@@download/ENCFF646IET.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF648SWK bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 499786399 ENCODE Processing Pipeline 4b057b30d5568aa7e74ba0624d052529 https://www.encodeproject.org/files/ENCFF648SWK/@@download/ENCFF648SWK.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF338QSO bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 589327607 ENCODE Processing Pipeline 6d26189c64a97c7f6ea93245859987c7 https://www.encodeproject.org/files/ENCFF338QSO/@@download/ENCFF338QSO.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF204SRC bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 535994248 ENCODE Processing Pipeline 0de0cc58c709fb0d6f467fd1f71cde41 https://www.encodeproject.org/files/ENCFF204SRC/@@download/ENCFF204SRC.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF255MKP bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 478277269 ENCODE Processing Pipeline 27ef5139e162e2ad94d7c3115e4429ad https://www.encodeproject.org/files/ENCFF255MKP/@@download/ENCFF255MKP.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF556UQH bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 572127130 ENCODE Processing Pipeline 67c2a6a6d5696b66f20281c3102abd15 https://www.encodeproject.org/files/ENCFF556UQH/@@download/ENCFF556UQH.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF991WSC bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 274747835 ENCODE Processing Pipeline f8a8dbaff67786ba5e44efa4b4d14a4f https://www.encodeproject.org/files/ENCFF991WSC/@@download/ENCFF991WSC.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF052JHA bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 272977058 ENCODE Processing Pipeline 7286330509967ec6a2f8f893c6e0ca87 https://www.encodeproject.org/files/ENCFF052JHA/@@download/ENCFF052JHA.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF425CNQ bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 228102171 ENCODE Processing Pipeline 6952e8c255ed4eabe10be7540fd1c4d4 https://www.encodeproject.org/files/ENCFF425CNQ/@@download/ENCFF425CNQ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF856RZG bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 228948768 ENCODE Processing Pipeline c39472b2b1126e0079a3f6c777b4fbd1 https://www.encodeproject.org/files/ENCFF856RZG/@@download/ENCFF856RZG.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF344JQP bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 431554330 ENCODE Processing Pipeline 4cf048056c25406c6c9b6de27ca1bf47 https://www.encodeproject.org/files/ENCFF344JQP/@@download/ENCFF344JQP.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF427RYH bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 423716196 ENCODE Processing Pipeline b246cce2e37729f0cbd733cfa7b19c3d https://www.encodeproject.org/files/ENCFF427RYH/@@download/ENCFF427RYH.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF274NLK bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 4422024 ENCODE Processing Pipeline 71b940ff4d33a9caf1927be37d115a9e https://www.encodeproject.org/files/ENCFF274NLK/@@download/ENCFF274NLK.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF277JBW bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 2402679 ENCODE Processing Pipeline 0829a49276284e40689ba46092519c52 https://www.encodeproject.org/files/ENCFF277JBW/@@download/ENCFF277JBW.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF507WAU bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 5097825 ENCODE Processing Pipeline 30b3fb90859a29a2527acfcaffbef4c3 https://www.encodeproject.org/files/ENCFF507WAU/@@download/ENCFF507WAU.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF518BAN bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 2426289 ENCODE Processing Pipeline 25dfe68525a7de8c54c3f2ec7bebd924 https://www.encodeproject.org/files/ENCFF518BAN/@@download/ENCFF518BAN.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF715BUI bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF277JBW 5033240 ENCODE Processing Pipeline 17ee21ff3c081c5ba0795427414c4543 https://www.encodeproject.org/files/ENCFF715BUI/@@download/ENCFF715BUI.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF066IRT bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF274NLK 10014510 ENCODE Processing Pipeline 5763d1cc8ac1fb6f158fc4225e6fe81e https://www.encodeproject.org/files/ENCFF066IRT/@@download/ENCFF066IRT.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF083HDR bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 4469694 ENCODE Processing Pipeline 03ef3cbb3fb149e90b9b0bd0f99b3e77 https://www.encodeproject.org/files/ENCFF083HDR/@@download/ENCFF083HDR.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF238JYT bed narrowPeak peaks and background as input for IDR ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 5119994 ENCODE Processing Pipeline 3c1e7a83b4cdb58a9e95a2bee4ee8527 https://www.encodeproject.org/files/ENCFF238JYT/@@download/ENCFF238JYT.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF223PZJ bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF507WAU 11160568 ENCODE Processing Pipeline 6b69d33900a4ed3a1893bbccd4f5a362 https://www.encodeproject.org/files/ENCFF223PZJ/@@download/ENCFF223PZJ.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF067KHH bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF083HDR 10112478 ENCODE Processing Pipeline 67918375dd125e4f28a2558cd30a8d01 https://www.encodeproject.org/files/ENCFF067KHH/@@download/ENCFF067KHH.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF680VWB bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238JYT 11181429 ENCODE Processing Pipeline f031da6444c9db142886a60a8dbd7406 https://www.encodeproject.org/files/ENCFF680VWB/@@download/ENCFF680VWB.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF859GUL bed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF083HDR, ENCFF238JYT, ENCFF518BAN 114600 ENCODE Processing Pipeline 1728913b9d4edae983ff10f874f832d8 https://www.encodeproject.org/files/ENCFF859GUL/@@download/ENCFF859GUL.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF894FDP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF701QXK 280518 ENCODE Processing Pipeline ba8d96a09ca396ada1f3d33ae4d8ad72 https://www.encodeproject.org/files/ENCFF894FDP/@@download/ENCFF894FDP.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF016ITG bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF518BAN 5081093 ENCODE Processing Pipeline d9f551d5e0cbc0747b0c31d1742d8033 https://www.encodeproject.org/files/ENCFF016ITG/@@download/ENCFF016ITG.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF310XNW bed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NLK, ENCFF277JBW, ENCFF419RSJ, ENCFF507WAU 121642 ENCODE Processing Pipeline 9cb9d27ea4aa1231aedfabb023389e3c https://www.encodeproject.org/files/ENCFF310XNW/@@download/ENCFF310XNW.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF633LAR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310XNW 260314 ENCODE Processing Pipeline 21765dd28396752614e5f86462107636 https://www.encodeproject.org/files/ENCFF633LAR/@@download/ENCFF633LAR.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF701QXK bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NLK, ENCFF277JBW, ENCFF419RSJ, ENCFF507WAU 141860 ENCODE Processing Pipeline 240ff17a5ab330385ccb93838dbe7fc6 https://www.encodeproject.org/files/ENCFF701QXK/@@download/ENCFF701QXK.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF805GKD bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF083HDR, ENCFF238JYT, ENCFF518BAN 139678 ENCODE Processing Pipeline f645df6ebe696a996c18451fce189d75 https://www.encodeproject.org/files/ENCFF805GKD/@@download/ENCFF805GKD.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF735UYL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF805GKD 278160 ENCODE Processing Pipeline 372a6c7a2c336aeb5d9bd841a3bd24e8 https://www.encodeproject.org/files/ENCFF735UYL/@@download/ENCFF735UYL.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF615SEL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF859GUL 252062 ENCODE Processing Pipeline b526708852aab4ef0bf8e106b9f495ae https://www.encodeproject.org/files/ENCFF615SEL/@@download/ENCFF615SEL.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking, mixed read lengths, borderline replicate concordance biological replicates with identical biosample insufficient read depth extremely low read length ENCFF203DJH fastq reads ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 2002064032 Bradley Bernstein, Broad 2758a23722f74212af20e3de0b5255e7 SRA:SRR5832981 https://www.encodeproject.org/files/ENCFF203DJH/@@download/ENCFF203DJH.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF374ENZ fastq reads ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 3243717284 Bradley Bernstein, Broad a570a972b311c9f7f865bef7e6002c55 SRA:SRR5832980 https://www.encodeproject.org/files/ENCFF374ENZ/@@download/ENCFF374ENZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF894WEU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF807MUK 1974337654 ENCODE Processing Pipeline fc8890c92b8899a8327addfcc20cdfc0 https://www.encodeproject.org/files/ENCFF894WEU/@@download/ENCFF894WEU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF337JUL bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF643CGH 3606080051 ENCODE Processing Pipeline 96cd05b2a7201d5212a0abe7784d7414 https://www.encodeproject.org/files/ENCFF337JUL/@@download/ENCFF337JUL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF550ZBF bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF807MUK 2378237551 ENCODE Processing Pipeline 515dd0dac15ce105aeaa69ffccf260b6 https://www.encodeproject.org/files/ENCFF550ZBF/@@download/ENCFF550ZBF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF720WGU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF807MUK 2662308777 ENCODE Processing Pipeline f5f5d6c3c6db3d21862fc8b9e7a0ab74 https://www.encodeproject.org/files/ENCFF720WGU/@@download/ENCFF720WGU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF136DQN bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF807MUK 3606210921 ENCODE Processing Pipeline f4865b69508e92e676c1bf97716cb0fe https://www.encodeproject.org/files/ENCFF136DQN/@@download/ENCFF136DQN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF944SDM bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF643CGH 2381131666 ENCODE Processing Pipeline b8b293d21f701233e225480dfdf8f505 https://www.encodeproject.org/files/ENCFF944SDM/@@download/ENCFF944SDM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF416WNF bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF643CGH 1981001828 ENCODE Processing Pipeline 65432742cbc2b35de31a9289e0e75062 https://www.encodeproject.org/files/ENCFF416WNF/@@download/ENCFF416WNF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF449TTJ bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF643CGH 2671189210 ENCODE Processing Pipeline e07afc81f1988db461a5636b888dcad5 https://www.encodeproject.org/files/ENCFF449TTJ/@@download/ENCFF449TTJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF727SUO bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 1592564500 ENCODE Processing Pipeline deb13387eb78c2444abe887b178d3470 https://www.encodeproject.org/files/ENCFF727SUO/@@download/ENCFF727SUO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF539IXT bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 1153720193 ENCODE Processing Pipeline 07eefef72a74f629769690538a1b237c https://www.encodeproject.org/files/ENCFF539IXT/@@download/ENCFF539IXT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF951BIH bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 1206144248 ENCODE Processing Pipeline 25c69cc031a120ee38ee0de0aef5188d https://www.encodeproject.org/files/ENCFF951BIH/@@download/ENCFF951BIH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF746SXE bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 1415283948 ENCODE Processing Pipeline ec6bb463c052cd6a6641ac1207eefac0 https://www.encodeproject.org/files/ENCFF746SXE/@@download/ENCFF746SXE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF026DSU bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 1093741012 ENCODE Processing Pipeline 756009be34420139c3b1c12ed251ba5d https://www.encodeproject.org/files/ENCFF026DSU/@@download/ENCFF026DSU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF569EHW bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 1527238562 ENCODE Processing Pipeline 2cf701235d4efd093a7e46cadbec03b0 https://www.encodeproject.org/files/ENCFF569EHW/@@download/ENCFF569EHW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF460YAE bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 1208734326 ENCODE Processing Pipeline 07852f03ed04e98576b90039b0f8ab94 https://www.encodeproject.org/files/ENCFF460YAE/@@download/ENCFF460YAE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF303QXI bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 1415287700 ENCODE Processing Pipeline 7ba8c1eb66ad087209c5dc35f75a3134 https://www.encodeproject.org/files/ENCFF303QXI/@@download/ENCFF303QXI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF764RUG bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF544DYV 13250937 ENCODE Processing Pipeline db6f9f4fbfcfff6ef8e3fda73a7b29d9 https://www.encodeproject.org/files/ENCFF764RUG/@@download/ENCFF764RUG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF544DYV bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 7217414 ENCODE Processing Pipeline 95b0d28a1d2e4a64e005f3480063cc5d https://www.encodeproject.org/files/ENCFF544DYV/@@download/ENCFF544DYV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF030RTP bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 1808722441 ENCODE Processing Pipeline 6fd69f1a43842ecc8e1acc2349a7e374 https://www.encodeproject.org/files/ENCFF030RTP/@@download/ENCFF030RTP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF086KYS bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 1389584812 ENCODE Processing Pipeline d1b40e883233132ccd8af181268bbea4 https://www.encodeproject.org/files/ENCFF086KYS/@@download/ENCFF086KYS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF642RXD bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 1845240307 ENCODE Processing Pipeline f1dddae8e5c64273a276f1ad83c02a7f https://www.encodeproject.org/files/ENCFF642RXD/@@download/ENCFF642RXD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF477RJI bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 6787883 ENCODE Processing Pipeline 088e00e370807953cee4a5eb25cc6fa5 https://www.encodeproject.org/files/ENCFF477RJI/@@download/ENCFF477RJI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF499ZPP bed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF477RJI, ENCFF544DYV, ENCFF593OVL 24795 ENCODE Processing Pipeline 93fe1707c7f50858be94b6b89ee09ba4 https://www.encodeproject.org/files/ENCFF499ZPP/@@download/ENCFF499ZPP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF592HLV bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 1173089645 ENCODE Processing Pipeline ae2111078fdcf08f690018ba5f109bf4 https://www.encodeproject.org/files/ENCFF592HLV/@@download/ENCFF592HLV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593OVL bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 6716953 ENCODE Processing Pipeline 2c89372816966903c15aee2761bd6ebc https://www.encodeproject.org/files/ENCFF593OVL/@@download/ENCFF593OVL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF364CUQ bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF593OVL 13540930 ENCODE Processing Pipeline 4241427aea2935a4ae0c96243e0e5c53 https://www.encodeproject.org/files/ENCFF364CUQ/@@download/ENCFF364CUQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF428HSL bed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF477RJI, ENCFF544DYV, ENCFF593OVL 16357 ENCODE Processing Pipeline 763ac34104a73b06b54df4105e41159f https://www.encodeproject.org/files/ENCFF428HSL/@@download/ENCFF428HSL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF070LAH bigBed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF499ZPP 106356 ENCODE Processing Pipeline a9f9d599bae4f3cece9769b4f446e256 https://www.encodeproject.org/files/ENCFF070LAH/@@download/ENCFF070LAH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF428VSR bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF477RJI 13310474 ENCODE Processing Pipeline 1a12370fba1c6f829735f838314a699c https://www.encodeproject.org/files/ENCFF428VSR/@@download/ENCFF428VSR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF231LKP bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 7193365 ENCODE Processing Pipeline f865fd1ba9b0b2f6ac735161f0b8998a https://www.encodeproject.org/files/ENCFF231LKP/@@download/ENCFF231LKP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF327MQY bigBed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF428HSL 90466 ENCODE Processing Pipeline 277863d8fe40a4c58dc2885ad6bcf26c https://www.encodeproject.org/files/ENCFF327MQY/@@download/ENCFF327MQY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF413CGE bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 6712980 ENCODE Processing Pipeline ac9eeb29b3dd7191b0eaa747648ee5b4 https://www.encodeproject.org/files/ENCFF413CGE/@@download/ENCFF413CGE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF309RDZ bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF734MMK 13383917 ENCODE Processing Pipeline 73ece24ab6eb44e12a811e220e6a78b5 https://www.encodeproject.org/files/ENCFF309RDZ/@@download/ENCFF309RDZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF232TGO bigBed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF520IRJ 123022 ENCODE Processing Pipeline 67efd0b76fb5596e2f6f35519465a7ec https://www.encodeproject.org/files/ENCFF232TGO/@@download/ENCFF232TGO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF404HAO bigBed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF249SIN 128370 ENCODE Processing Pipeline a214dc3978448aa532dae807258e61a5 https://www.encodeproject.org/files/ENCFF404HAO/@@download/ENCFF404HAO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF438GOP bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF413CGE 13554172 ENCODE Processing Pipeline b3584dca61a64f463500b907dfe7e97d https://www.encodeproject.org/files/ENCFF438GOP/@@download/ENCFF438GOP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF734MMK bed narrowPeak peaks and background as input for IDR ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 6737165 ENCODE Processing Pipeline ea220b93af2f138fa5da7a6addb77797 https://www.encodeproject.org/files/ENCFF734MMK/@@download/ENCFF734MMK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF249SIN bed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP, ENCFF413CGE, ENCFF419RSJ, ENCFF734MMK 28528 ENCODE Processing Pipeline 57955a4ec4c6e38b9678a412f97a454f https://www.encodeproject.org/files/ENCFF249SIN/@@download/ENCFF249SIN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF968JLN bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP 13312590 ENCODE Processing Pipeline c3081bb9c6526dee323f988b5bfb6f89 https://www.encodeproject.org/files/ENCFF968JLN/@@download/ENCFF968JLN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF520IRJ bed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP, ENCFF413CGE, ENCFF419RSJ, ENCFF734MMK 19980 ENCODE Processing Pipeline cfbdc53b5f419e6dbfcff53afd3b302d https://www.encodeproject.org/files/ENCFF520IRJ/@@download/ENCFF520IRJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF000VVE bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 1 570761577 Michael Snyder, Stanford 35349527985f25dace4839f66616d291 https://www.encodeproject.org/files/ENCFF000VVE/@@download/ENCFF000VVE.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VVF bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VEH 162397 Michael Snyder, Stanford c5b218ebc3a66738b5fdad734c33485f https://www.encodeproject.org/files/ENCFF000VVF/@@download/ENCFF000VVF.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VVG fastq reads ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 977347482 Michael Snyder, Stanford 046febef41458320ae41bcabb0ed76d7 https://www.encodeproject.org/files/ENCFF000VVG/@@download/ENCFF000VVG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VVI fastq reads ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1039753663 Michael Snyder, Stanford e671f4b2300c1f29c3172b3cfd0bd162 https://www.encodeproject.org/files/ENCFF000VVI/@@download/ENCFF000VVI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VVK bigWig signal ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 657724635 Michael Snyder, Stanford f24daba4abdd9cbb7c633a21791de4cf https://www.encodeproject.org/files/ENCFF000VVK/@@download/ENCFF000VVK.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VVL bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 1 1333800515 Michael Snyder, Stanford 76b83d67741fbfbc7f5123cf14f0d063 https://www.encodeproject.org/files/ENCFF000VVL/@@download/ENCFF000VVL.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001VEH bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 43117 Michael Snyder, Stanford 846ae6723c2d5f31c74ce7cdb260b991 https://www.encodeproject.org/files/ENCFF001VEH/@@download/ENCFF001VEH.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF403OML bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF643CGH 773441176 ENCODE Processing Pipeline fb6911f5f8786bd415490063df667d49 https://www.encodeproject.org/files/ENCFF403OML/@@download/ENCFF403OML.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF180DFG bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF643CGH 1107862636 ENCODE Processing Pipeline b5f46a25c64774daee2d1759613084ef https://www.encodeproject.org/files/ENCFF180DFG/@@download/ENCFF180DFG.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF166EOU bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF643CGH 1326491450 ENCODE Processing Pipeline 28cafc62aed4c7c246741a6f9484a0cf https://www.encodeproject.org/files/ENCFF166EOU/@@download/ENCFF166EOU.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF361YDK bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF643CGH 863122819 ENCODE Processing Pipeline ac3d118bfd55bc69cf371451af5f3fe9 https://www.encodeproject.org/files/ENCFF361YDK/@@download/ENCFF361YDK.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF063WPO bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF807MUK 1103765803 ENCODE Processing Pipeline fd2c414913774cef83dc62d0147bcdfb https://www.encodeproject.org/files/ENCFF063WPO/@@download/ENCFF063WPO.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF384RBC bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF807MUK 773126796 ENCODE Processing Pipeline cd6d87182ddaa5d11d34523d1c12df9c https://www.encodeproject.org/files/ENCFF384RBC/@@download/ENCFF384RBC.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF329PQZ bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF807MUK 861764562 ENCODE Processing Pipeline 93e97c58d9f3f25aaaf0cf44e23d68c5 https://www.encodeproject.org/files/ENCFF329PQZ/@@download/ENCFF329PQZ.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF790QIK bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF807MUK 1320200555 ENCODE Processing Pipeline e540dc53d88873e6e641dca9204a1e42 https://www.encodeproject.org/files/ENCFF790QIK/@@download/ENCFF790QIK.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF381RLE bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 419219073 ENCODE Processing Pipeline 0d3f08ab30f56b1e617b0e0265f17167 https://www.encodeproject.org/files/ENCFF381RLE/@@download/ENCFF381RLE.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF252IHB bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 468787904 ENCODE Processing Pipeline e4704f8c23d1995b0c438b36c73bdcb3 https://www.encodeproject.org/files/ENCFF252IHB/@@download/ENCFF252IHB.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF210OLZ bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 501324119 ENCODE Processing Pipeline 529c966efc9d63a1a997a34155eae795 https://www.encodeproject.org/files/ENCFF210OLZ/@@download/ENCFF210OLZ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF877FVN bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 397813578 ENCODE Processing Pipeline f63ba74f4822ea64fe852538e61cb66c https://www.encodeproject.org/files/ENCFF877FVN/@@download/ENCFF877FVN.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF884PSQ bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 4754835 ENCODE Processing Pipeline 948814f77dce7d4597b16aad1f263a4d https://www.encodeproject.org/files/ENCFF884PSQ/@@download/ENCFF884PSQ.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF889SRN bed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO, ENCFF419RSJ, ENCFF884PSQ, ENCFF935YJA 69931 ENCODE Processing Pipeline 8f7bf7487183bb6dae71817d31633f4e https://www.encodeproject.org/files/ENCFF889SRN/@@download/ENCFF889SRN.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF960DMZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF889SRN 193176 ENCODE Processing Pipeline e6b24b8fa770a179b5699b8855650c3e https://www.encodeproject.org/files/ENCFF960DMZ/@@download/ENCFF960DMZ.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF874VBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF722LJP 231671 ENCODE Processing Pipeline 3990f5886066c0385c599bf99472b44a https://www.encodeproject.org/files/ENCFF874VBP/@@download/ENCFF874VBP.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF355OHN bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 416143585 ENCODE Processing Pipeline ad9bf1766598dd4a8a6861e41dba3ffd https://www.encodeproject.org/files/ENCFF355OHN/@@download/ENCFF355OHN.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF722LJP bed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO, ENCFF419RSJ, ENCFF884PSQ, ENCFF935YJA 93354 ENCODE Processing Pipeline 1bf7b0d14a0396216a83bea7edfd8bd1 https://www.encodeproject.org/files/ENCFF722LJP/@@download/ENCFF722LJP.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF039UZO bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 5364189 ENCODE Processing Pipeline 3d4abbf91c62dfab7074b43993fa5f70 https://www.encodeproject.org/files/ENCFF039UZO/@@download/ENCFF039UZO.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF120DNO bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF935YJA 10754255 ENCODE Processing Pipeline 95b88933f9c598042712bcf7fe76f737 https://www.encodeproject.org/files/ENCFF120DNO/@@download/ENCFF120DNO.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF927RKI bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO 11287022 ENCODE Processing Pipeline b0b883576496a2cd3e6671c92564e874 https://www.encodeproject.org/files/ENCFF927RKI/@@download/ENCFF927RKI.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF440TNS bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 691084977 ENCODE Processing Pipeline 247a2cfe8a316c1a84089b68568c1ed0 https://www.encodeproject.org/files/ENCFF440TNS/@@download/ENCFF440TNS.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF935YJA bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 4305830 ENCODE Processing Pipeline 26a7de6c0203a59478193f1150c13769 https://www.encodeproject.org/files/ENCFF935YJA/@@download/ENCFF935YJA.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF661EHU bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF884PSQ 11059788 ENCODE Processing Pipeline 75230e01b499b527de1c8161cfd82831 https://www.encodeproject.org/files/ENCFF661EHU/@@download/ENCFF661EHU.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF328WHX bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 395797208 ENCODE Processing Pipeline 936de70d72749507e39485f9ad3d4f30 https://www.encodeproject.org/files/ENCFF328WHX/@@download/ENCFF328WHX.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF809SWD bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 489863064 ENCODE Processing Pipeline aa4478ef98b693dea49975b1cc54ceb7 https://www.encodeproject.org/files/ENCFF809SWD/@@download/ENCFF809SWD.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF169WVN bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 468559708 ENCODE Processing Pipeline 69b8bbd5a6cf5b2c3212cc20ee05fd40 https://www.encodeproject.org/files/ENCFF169WVN/@@download/ENCFF169WVN.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF430QIK bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 4342082 ENCODE Processing Pipeline 0e2141abcbdb75330819f35685b60e9f https://www.encodeproject.org/files/ENCFF430QIK/@@download/ENCFF430QIK.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF376BVD bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF894NTO 11283310 ENCODE Processing Pipeline ebaa9bcf7d84b29505d5a4043d5759fc https://www.encodeproject.org/files/ENCFF376BVD/@@download/ENCFF376BVD.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF984LWJ bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 421402939 ENCODE Processing Pipeline f0c406c947c771c153acf11b7e0151ac https://www.encodeproject.org/files/ENCFF984LWJ/@@download/ENCFF984LWJ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF927WFK bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 4742873 ENCODE Processing Pipeline dec30187d31bd754807fc4bf02bebd8d https://www.encodeproject.org/files/ENCFF927WFK/@@download/ENCFF927WFK.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF195PBG bed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF430QIK, ENCFF894NTO, ENCFF927WFK 93614 ENCODE Processing Pipeline 3efe3e9ba0dd7bc225ff4fec1d74a0a8 https://www.encodeproject.org/files/ENCFF195PBG/@@download/ENCFF195PBG.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF455CRV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF195PBG 231536 ENCODE Processing Pipeline 9c42ce3107f31ce80adb926ea3941700 https://www.encodeproject.org/files/ENCFF455CRV/@@download/ENCFF455CRV.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF774MPS bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 703460902 ENCODE Processing Pipeline 6cbb20aa86e40a08b72d3c27f6a3cdcb https://www.encodeproject.org/files/ENCFF774MPS/@@download/ENCFF774MPS.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF894NTO bed narrowPeak peaks and background as input for IDR ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 5410801 ENCODE Processing Pipeline 5d593f5f99469bae6cec0a6dd7f0a124 https://www.encodeproject.org/files/ENCFF894NTO/@@download/ENCFF894NTO.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF697QWK bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF927WFK 11054060 ENCODE Processing Pipeline 22ba076eb6eaa0cce633192231f38eaf https://www.encodeproject.org/files/ENCFF697QWK/@@download/ENCFF697QWK.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF626NOD bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF430QIK 10804188 ENCODE Processing Pipeline 111f8bd14ddffd364ed9a84391ec4d81 https://www.encodeproject.org/files/ENCFF626NOD/@@download/ENCFF626NOD.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF264IQF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF077VXQ 198617 ENCODE Processing Pipeline bc6f9b8ee3d20a18b50e827ca35a9a67 https://www.encodeproject.org/files/ENCFF264IQF/@@download/ENCFF264IQF.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF316RTM bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 527815400 ENCODE Processing Pipeline 9e6f58f359cc0b0979951af6bd10cc3e https://www.encodeproject.org/files/ENCFF316RTM/@@download/ENCFF316RTM.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF077VXQ bed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF430QIK, ENCFF894NTO, ENCFF927WFK 74080 ENCODE Processing Pipeline 9f203d159d3d9d32afa28c108c423036 https://www.encodeproject.org/files/ENCFF077VXQ/@@download/ENCFF077VXQ.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF046BNP fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 2 ENCFF673POI 2537206957 Michael Snyder, Stanford 7fcaaafe97019a0e0a9d18b0c390ef83 https://www.encodeproject.org/files/ENCFF046BNP/@@download/ENCFF046BNP.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF673POI fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 1 ENCFF046BNP 2271496038 Michael Snyder, Stanford e48679d1959bae02cebbc2439d4fdf19 https://www.encodeproject.org/files/ENCFF673POI/@@download/ENCFF673POI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF608SVW bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF643CGH, ENCFF673POI 4373092768 ENCODE Processing Pipeline 18ed7e8e69c296f19a84d059ce37b392 https://www.encodeproject.org/files/ENCFF608SVW/@@download/ENCFF608SVW.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF499GGU bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF673POI, ENCFF807MUK 4372430794 ENCODE Processing Pipeline cc116844169dd172448f37bc21ab0a82 https://www.encodeproject.org/files/ENCFF499GGU/@@download/ENCFF499GGU.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF699XZD bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF643CGH, ENCFF673POI 2431108563 ENCODE Processing Pipeline 0705067d77665e3a4bed14ce3f7488fa https://www.encodeproject.org/files/ENCFF699XZD/@@download/ENCFF699XZD.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF990UBY bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF673POI, ENCFF807MUK 2427558169 ENCODE Processing Pipeline b82ee0e39d49b4b9256780f1ba57a5bb https://www.encodeproject.org/files/ENCFF990UBY/@@download/ENCFF990UBY.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF351HVZ bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 998189592 ENCODE Processing Pipeline ac3c5d8d56e5a122215f89fa87555ad0 https://www.encodeproject.org/files/ENCFF351HVZ/@@download/ENCFF351HVZ.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF372MKM bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 919602016 ENCODE Processing Pipeline d560b881ab1e36c1510656756fd3794f https://www.encodeproject.org/files/ENCFF372MKM/@@download/ENCFF372MKM.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF061LQH fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF294AIF 3621012703 Michael Snyder, Stanford 78a7e485f66888dd9c98404b85e20889 https://www.encodeproject.org/files/ENCFF061LQH/@@download/ENCFF061LQH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF294AIF fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF061LQH 2970314825 Michael Snyder, Stanford 562e1b2b82e65e44b2bb7c0bc8a4bd77 https://www.encodeproject.org/files/ENCFF294AIF/@@download/ENCFF294AIF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF397TMG bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF807MUK 6265236147 ENCODE Processing Pipeline 7023fc28c6d8055f3bb6637083872b10 https://www.encodeproject.org/files/ENCFF397TMG/@@download/ENCFF397TMG.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF978HGN bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF807MUK 4978857912 ENCODE Processing Pipeline 50166d70fd53e28881f70f3d0d527c5d https://www.encodeproject.org/files/ENCFF978HGN/@@download/ENCFF978HGN.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF369IXJ bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF643CGH 6271675234 ENCODE Processing Pipeline a3b977050c308a31824ed8ae51542a8e https://www.encodeproject.org/files/ENCFF369IXJ/@@download/ENCFF369IXJ.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF426PKA bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF643CGH 4987203204 ENCODE Processing Pipeline 30d64440d47ac5b97966c1a8722e0570 https://www.encodeproject.org/files/ENCFF426PKA/@@download/ENCFF426PKA.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF884LYZ bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 921846633 ENCODE Processing Pipeline 02c328335e12f0ca97e0e146019b287e https://www.encodeproject.org/files/ENCFF884LYZ/@@download/ENCFF884LYZ.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF172CTG bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 1787522536 ENCODE Processing Pipeline ca3be90bc547093c841dfc852d98d8fa https://www.encodeproject.org/files/ENCFF172CTG/@@download/ENCFF172CTG.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF676GTL bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 998832721 ENCODE Processing Pipeline aa06d0201b82bc911d5b6c1ebc6075dc https://www.encodeproject.org/files/ENCFF676GTL/@@download/ENCFF676GTL.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF106SXI bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 2031920546 ENCODE Processing Pipeline ceb4c9d11eefc35f39319a84a57c518a https://www.encodeproject.org/files/ENCFF106SXI/@@download/ENCFF106SXI.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF804CWU bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 1894344529 ENCODE Processing Pipeline 78c7a80e24f4019ce34ed9750823a3ef https://www.encodeproject.org/files/ENCFF804CWU/@@download/ENCFF804CWU.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF561TKX bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 2200199014 ENCODE Processing Pipeline 50a3a2228f60ba97b02197079bd61c6e https://www.encodeproject.org/files/ENCFF561TKX/@@download/ENCFF561TKX.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF929JFV bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 6807133 ENCODE Processing Pipeline b14a2582d4ea32cc3de1df1194e646d3 https://www.encodeproject.org/files/ENCFF929JFV/@@download/ENCFF929JFV.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF585SRV bed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF305CPJ, ENCFF419RSJ, ENCFF488IXJ, ENCFF929JFV 221269 ENCODE Processing Pipeline b50031f2ad7a050c0994d7b8d57f8b10 https://www.encodeproject.org/files/ENCFF585SRV/@@download/ENCFF585SRV.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF313HWC bigBed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF585SRV 523523 ENCODE Processing Pipeline 00eb5b13186cb3b1c88366c7159797a7 https://www.encodeproject.org/files/ENCFF313HWC/@@download/ENCFF313HWC.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF488IXJ bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 7234070 ENCODE Processing Pipeline 14077f1fb2aa3473869bf6a4bb420094 https://www.encodeproject.org/files/ENCFF488IXJ/@@download/ENCFF488IXJ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF206GKF bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF120JZJ 11494220 ENCODE Processing Pipeline eb878c1204ebfb18e0b8b6706972a5be https://www.encodeproject.org/files/ENCFF206GKF/@@download/ENCFF206GKF.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF091ZZL bigBed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF794KET 521577 ENCODE Processing Pipeline 2ec3515b8e506a2677bcf4f55dc4c262 https://www.encodeproject.org/files/ENCFF091ZZL/@@download/ENCFF091ZZL.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF609WTE bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF305CPJ 13193531 ENCODE Processing Pipeline 41f15a01e81aaba0c2c050a96d1200f3 https://www.encodeproject.org/files/ENCFF609WTE/@@download/ENCFF609WTE.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF758RQJ bed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF305CPJ, ENCFF419RSJ, ENCFF488IXJ, ENCFF929JFV 391712 ENCODE Processing Pipeline 63c3b3b5341fb4a06d72db54da8e278d https://www.encodeproject.org/files/ENCFF758RQJ/@@download/ENCFF758RQJ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF686GBQ bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 1910311667 ENCODE Processing Pipeline 1e36891d4076593f079f0611b0e7f386 https://www.encodeproject.org/files/ENCFF686GBQ/@@download/ENCFF686GBQ.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF432CDN bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 6786469 ENCODE Processing Pipeline 4edfb0aa2d1440a8882779dda099addf https://www.encodeproject.org/files/ENCFF432CDN/@@download/ENCFF432CDN.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF752DQJ bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF432CDN 13198252 ENCODE Processing Pipeline 0d66f78fc407445cdc1d378526c7d921 https://www.encodeproject.org/files/ENCFF752DQJ/@@download/ENCFF752DQJ.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF305CPJ bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 6777773 ENCODE Processing Pipeline fcd9228605790b0e7c0ea983dff31b3a https://www.encodeproject.org/files/ENCFF305CPJ/@@download/ENCFF305CPJ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF212KAK bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF929JFV 11508582 ENCODE Processing Pipeline 333420c1381f51b7892066e93fb7789f https://www.encodeproject.org/files/ENCFF212KAK/@@download/ENCFF212KAK.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF890GTG bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF488IXJ 13339896 ENCODE Processing Pipeline 737c3e2e8b3c118d522f640444348c5d https://www.encodeproject.org/files/ENCFF890GTG/@@download/ENCFF890GTG.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF995RFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF758RQJ 799431 ENCODE Processing Pipeline 7bea95d9e7377c28ed86c0f035cfdee7 https://www.encodeproject.org/files/ENCFF995RFJ/@@download/ENCFF995RFJ.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF635KDV bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 1595939203 ENCODE Processing Pipeline aac642029fa4f15215c9d6c5ee246a69 https://www.encodeproject.org/files/ENCFF635KDV/@@download/ENCFF635KDV.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF120JZJ bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 6801936 ENCODE Processing Pipeline cffb43b1cf09a50987c4add4ade78851 https://www.encodeproject.org/files/ENCFF120JZJ/@@download/ENCFF120JZJ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF794KET bed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF076KST, ENCFF120JZJ, ENCFF432CDN 220103 ENCODE Processing Pipeline f38b4a46db8ccefc71442cc02fd53c6f https://www.encodeproject.org/files/ENCFF794KET/@@download/ENCFF794KET.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF310WZG bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 2192024861 ENCODE Processing Pipeline 432172030283c292c67e5d4f7a1c1f70 https://www.encodeproject.org/files/ENCFF310WZG/@@download/ENCFF310WZG.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF489AGF bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 2215448513 ENCODE Processing Pipeline 881ec64c2987e8b8f95319b9dec4c3c6 https://www.encodeproject.org/files/ENCFF489AGF/@@download/ENCFF489AGF.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF076KST bed narrowPeak peaks and background as input for IDR ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 7225594 ENCODE Processing Pipeline b075a273973b0b1cf1213d5d914efc1b https://www.encodeproject.org/files/ENCFF076KST/@@download/ENCFF076KST.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF295DQJ bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF076KST 13334506 ENCODE Processing Pipeline 8751513fa3a9ed92d4a41ba5361177f0 https://www.encodeproject.org/files/ENCFF295DQJ/@@download/ENCFF295DQJ.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF240NLG bigBed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF166OZW 801372 ENCODE Processing Pipeline af344598e05f442aebfa7f30a5b481f4 https://www.encodeproject.org/files/ENCFF240NLG/@@download/ENCFF240NLG.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF166OZW bed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF076KST, ENCFF120JZJ, ENCFF432CDN 392782 ENCODE Processing Pipeline bc27294f20916f956fe9f163466e61a7 https://www.encodeproject.org/files/ENCFF166OZW/@@download/ENCFF166OZW.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF000VUV bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 1 553428325 Michael Snyder, Stanford 66e0264d503b6a370d0e7b6bc8812c88 https://www.encodeproject.org/files/ENCFF000VUV/@@download/ENCFF000VUV.bam hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VUX bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEG 1243478 Michael Snyder, Stanford bcd7eda74dc623b5b73a358defe57d7b https://www.encodeproject.org/files/ENCFF000VUX/@@download/ENCFF000VUX.bigBed hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VUY fastq reads ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1063801937 Michael Snyder, Stanford 64198a71c421529f6a5877c9d2b10c97 https://www.encodeproject.org/files/ENCFF000VUY/@@download/ENCFF000VUY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VVA fastq reads ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1091220409 Michael Snyder, Stanford 74541ffd7e5da51feed0a7d7814300f3 https://www.encodeproject.org/files/ENCFF000VVA/@@download/ENCFF000VVA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VVC bigWig signal ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 415057874 Michael Snyder, Stanford 34b6c917cf553e92c29cbdce45d358ff https://www.encodeproject.org/files/ENCFF000VVC/@@download/ENCFF000VVC.bigWig hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VVD bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 1 581628302 Michael Snyder, Stanford 260dec792f69ad792949d633372be1a3 https://www.encodeproject.org/files/ENCFF000VVD/@@download/ENCFF000VVD.bam hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF001VEG bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 537303 Michael Snyder, Stanford 063c0a3aaaeb7ad1a3f0d5ef6aff0efa https://www.encodeproject.org/files/ENCFF001VEG/@@download/ENCFF001VEG.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF002COT bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 149104 ENCODE Consortium Analysis Working Group 6aa06ce60d16b95212716e13ef16917d https://www.encodeproject.org/files/ENCFF002COT/@@download/ENCFF002COT.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF150CIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COT 455463 ENCODE Consortium 26ee6947bf9ef07e8bf5a8041c027d7f https://www.encodeproject.org/files/ENCFF150CIG/@@download/ENCFF150CIG.bigBed hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF156QYK bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF643CGH 1093234879 ENCODE Processing Pipeline cfe996548661bc53302109ac852f4c57 https://www.encodeproject.org/files/ENCFF156QYK/@@download/ENCFF156QYK.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF211VKF bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF643CGH 698249290 ENCODE Processing Pipeline 6626faa93046e45f91b9749e7720e5f4 https://www.encodeproject.org/files/ENCFF211VKF/@@download/ENCFF211VKF.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF766YFE bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF643CGH 1078433314 ENCODE Processing Pipeline 0736bc51209c86208fe553042bd22da0 https://www.encodeproject.org/files/ENCFF766YFE/@@download/ENCFF766YFE.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF784XUE bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF643CGH 678598622 ENCODE Processing Pipeline 5d5f013d724c685dac6506f9068010b7 https://www.encodeproject.org/files/ENCFF784XUE/@@download/ENCFF784XUE.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF199VLV bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF807MUK 1075381256 ENCODE Processing Pipeline f662a36be558ddc5600a3406f395dea1 https://www.encodeproject.org/files/ENCFF199VLV/@@download/ENCFF199VLV.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF556BST bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF807MUK 1088782792 ENCODE Processing Pipeline b8ce5fd4a9b9bdc21031a1b9b2edf9f9 https://www.encodeproject.org/files/ENCFF556BST/@@download/ENCFF556BST.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF164TSL bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF807MUK 693109877 ENCODE Processing Pipeline 87581e2f77909f8db89dfbac2b2f9b3d https://www.encodeproject.org/files/ENCFF164TSL/@@download/ENCFF164TSL.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF551AQK bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF807MUK 678769539 ENCODE Processing Pipeline 0204e0a3d6c9bc4eae742e9db7db2120 https://www.encodeproject.org/files/ENCFF551AQK/@@download/ENCFF551AQK.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF457WBU bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 3582199 ENCODE Processing Pipeline 7192241e9e8b555f465ce209223b0a77 https://www.encodeproject.org/files/ENCFF457WBU/@@download/ENCFF457WBU.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF363IMU bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF457WBU 7712940 ENCODE Processing Pipeline 05558b7ea5a376162897db1b6be9db57 https://www.encodeproject.org/files/ENCFF363IMU/@@download/ENCFF363IMU.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF343YGH bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 153662802 ENCODE Processing Pipeline 16314abc714f93499ab6953f7e585bb1 https://www.encodeproject.org/files/ENCFF343YGH/@@download/ENCFF343YGH.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF290YYN bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF304FFB 10385775 ENCODE Processing Pipeline d09923022192655d064e886fea6e247d https://www.encodeproject.org/files/ENCFF290YYN/@@download/ENCFF290YYN.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF009GUG bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 177767543 ENCODE Processing Pipeline d9fa3b5c171df705c27620c0225df8a8 https://www.encodeproject.org/files/ENCFF009GUG/@@download/ENCFF009GUG.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF979FNK bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 520648844 ENCODE Processing Pipeline ecbdb8e27ecc687e721b55d4e708c35d https://www.encodeproject.org/files/ENCFF979FNK/@@download/ENCFF979FNK.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF434DKI bed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF304FFB, ENCFF457WBU, ENCFF839VSW 112213 ENCODE Processing Pipeline 68ab5d79566bb94990cc8bbccb060ac7 https://www.encodeproject.org/files/ENCFF434DKI/@@download/ENCFF434DKI.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF556JBS bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF304FFB, ENCFF457WBU, ENCFF839VSW 137008 ENCODE Processing Pipeline 8a3f9f934ad6fb0dc377fb2d047121b3 https://www.encodeproject.org/files/ENCFF556JBS/@@download/ENCFF556JBS.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF326DLG bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 72500952 ENCODE Processing Pipeline b8304d774b5277dd55754a366f5a5329 https://www.encodeproject.org/files/ENCFF326DLG/@@download/ENCFF326DLG.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF487SSS bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 240435669 ENCODE Processing Pipeline cec7fcbb6f63fddaf8da5b2080b4f2da https://www.encodeproject.org/files/ENCFF487SSS/@@download/ENCFF487SSS.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF229LMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF434DKI 260457 ENCODE Processing Pipeline a3a0457dafa6ac0069a5b929710b72fd https://www.encodeproject.org/files/ENCFF229LMM/@@download/ENCFF229LMM.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF895DUB bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 300180779 ENCODE Processing Pipeline 14e6c478eaf600db19c4f85f28b33d9c https://www.encodeproject.org/files/ENCFF895DUB/@@download/ENCFF895DUB.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF008WDX bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF839VSW 11056137 ENCODE Processing Pipeline cecaac2f0ba31a854d9d864ffbbb0090 https://www.encodeproject.org/files/ENCFF008WDX/@@download/ENCFF008WDX.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF304FFB bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 4310528 ENCODE Processing Pipeline 702bb44e799b0f61b777af58d1f4cf64 https://www.encodeproject.org/files/ENCFF304FFB/@@download/ENCFF304FFB.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF839VSW bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 4653531 ENCODE Processing Pipeline c85db1da917321d9b2d8bd75255abef6 https://www.encodeproject.org/files/ENCFF839VSW/@@download/ENCFF839VSW.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF632SRN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF556JBS 299102 ENCODE Processing Pipeline 3d7bab4b9f116509889032e2ed535ef3 https://www.encodeproject.org/files/ENCFF632SRN/@@download/ENCFF632SRN.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF308NKV bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 518652653 ENCODE Processing Pipeline 51981605cc22fb5ebbb7323a83c67d67 https://www.encodeproject.org/files/ENCFF308NKV/@@download/ENCFF308NKV.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF046RZE bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF897QWE 10412267 ENCODE Processing Pipeline 5cfe30b0f7a301b43480475875c13db0 https://www.encodeproject.org/files/ENCFF046RZE/@@download/ENCFF046RZE.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF503NRF bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 177717486 ENCODE Processing Pipeline 79a1d3be594ec2c6d531e2e3ccd6edce https://www.encodeproject.org/files/ENCFF503NRF/@@download/ENCFF503NRF.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF951OBZ bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 240311797 ENCODE Processing Pipeline 72e9647c2391acedac3d0cb7dc732a78 https://www.encodeproject.org/files/ENCFF951OBZ/@@download/ENCFF951OBZ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF494KAM bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 153625432 ENCODE Processing Pipeline fc353d51f00c240dc2117c923f828be4 https://www.encodeproject.org/files/ENCFF494KAM/@@download/ENCFF494KAM.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF897QWE bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 4337491 ENCODE Processing Pipeline 29d45727b2bbac544b81fb5ac7353070 https://www.encodeproject.org/files/ENCFF897QWE/@@download/ENCFF897QWE.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF098XFA bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 4653213 ENCODE Processing Pipeline 59fc89f6047ba6e0076ce0a710f36546 https://www.encodeproject.org/files/ENCFF098XFA/@@download/ENCFF098XFA.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF287DEM bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA 11060222 ENCODE Processing Pipeline ca0b07f62e8c219f5830cfcd43374d6c https://www.encodeproject.org/files/ENCFF287DEM/@@download/ENCFF287DEM.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF350TKU bed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA, ENCFF317BNJ, ENCFF419RSJ, ENCFF897QWE 112681 ENCODE Processing Pipeline 4288c8eb9e0597e4544c6c37097a6323 https://www.encodeproject.org/files/ENCFF350TKU/@@download/ENCFF350TKU.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF871ZOA bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF317BNJ 7629008 ENCODE Processing Pipeline 00dc499f1d51a3e5f852310f3b2a3b08 https://www.encodeproject.org/files/ENCFF871ZOA/@@download/ENCFF871ZOA.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF198QDA bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 298311452 ENCODE Processing Pipeline a2c617ccb4763e69cb7ba563060ce34f https://www.encodeproject.org/files/ENCFF198QDA/@@download/ENCFF198QDA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF577VFY bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 72464618 ENCODE Processing Pipeline 74e3a639dd6f39d4d482928319f76883 https://www.encodeproject.org/files/ENCFF577VFY/@@download/ENCFF577VFY.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF317BNJ bed narrowPeak peaks and background as input for IDR ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 3585270 ENCODE Processing Pipeline 84f943300e0b1e2e8e55be4a20ab41a6 https://www.encodeproject.org/files/ENCFF317BNJ/@@download/ENCFF317BNJ.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF432AQP bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA, ENCFF317BNJ, ENCFF419RSJ, ENCFF897QWE 146581 ENCODE Processing Pipeline fbb563270ff1dc6948f5e8b396636079 https://www.encodeproject.org/files/ENCFF432AQP/@@download/ENCFF432AQP.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF264FWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF432AQP 312321 ENCODE Processing Pipeline 062b9066d1f55e595494d9a9af702822 https://www.encodeproject.org/files/ENCFF264FWY/@@download/ENCFF264FWY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF173WFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF350TKU 262068 ENCODE Processing Pipeline 313edb8884de768926c1ea2f7cf587a0 https://www.encodeproject.org/files/ENCFF173WFH/@@download/ENCFF173WFH.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF439JPL fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 1 75 single-ended 1936330158 Bradley Bernstein, Broad e1b3536f0dc07f1a2fd2de0571422d7f SRA:SRR5833049 https://www.encodeproject.org/files/ENCFF439JPL/@@download/ENCFF439JPL.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF967CDT fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 3 1 36 single-ended 1589539176 Bradley Bernstein, Broad 202621e5c6dffc479349b6ef436c489e https://www.encodeproject.org/files/ENCFF967CDT/@@download/ENCFF967CDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF451IDT/, /files/ENCFF643EHE/ archived borderline replicate concordance, inconsistent control read length, low read depth, mild to moderate bottlenecking ENCFF618AAS fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 3 2 36 single-ended 1257564139 Bradley Bernstein, Broad 92f46441d11f95b4d4cb9e6c82d06a6d https://www.encodeproject.org/files/ENCFF618AAS/@@download/ENCFF618AAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF451IDT/, /files/ENCFF643EHE/ archived borderline replicate concordance, inconsistent control read length, low read depth, mild to moderate bottlenecking ENCFF236MSV fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 1 76 single-ended 955867342 Bradley Bernstein, Broad 0549f08f9449a867955405fdd3bf04ba SRA:SRR5833048 https://www.encodeproject.org/files/ENCFF236MSV/@@download/ENCFF236MSV.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF154OIS bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF807MUK 1161935189 ENCODE Processing Pipeline 8078aa36a15ddef3af27ee82a7a5cd0a https://www.encodeproject.org/files/ENCFF154OIS/@@download/ENCFF154OIS.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF456YBO bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF643CGH 1162764541 ENCODE Processing Pipeline 8b9d23ef77a06e6cef6b6090ac894461 https://www.encodeproject.org/files/ENCFF456YBO/@@download/ENCFF456YBO.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF306SNU bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF643CGH 2277829518 ENCODE Processing Pipeline fa06c61b88c8a795bb1e7e74d9e9325a https://www.encodeproject.org/files/ENCFF306SNU/@@download/ENCFF306SNU.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF898CWV bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF643CGH 915254037 ENCODE Processing Pipeline 7f88781e04365159184035f294d5fefa https://www.encodeproject.org/files/ENCFF898CWV/@@download/ENCFF898CWV.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF558XZK bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF807MUK 2275355151 ENCODE Processing Pipeline 48942fa2f14e730a0963ddb7d4a6df21 https://www.encodeproject.org/files/ENCFF558XZK/@@download/ENCFF558XZK.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF562TOQ bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF807MUK 911394392 ENCODE Processing Pipeline b33835fa6ba0e265923e2d0def01bdf6 https://www.encodeproject.org/files/ENCFF562TOQ/@@download/ENCFF562TOQ.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF279PAE bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF643CGH 1755881038 ENCODE Processing Pipeline cf8caf0e4dbdc8ebab9b913b952e0f9d https://www.encodeproject.org/files/ENCFF279PAE/@@download/ENCFF279PAE.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF485RWA bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF807MUK 1749341535 ENCODE Processing Pipeline 21ff0fdb085ee5eac03ee7cc19e8dd79 https://www.encodeproject.org/files/ENCFF485RWA/@@download/ENCFF485RWA.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF738ZMP bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 930855211 ENCODE Processing Pipeline 9d77a55012fac8c46e2f893655d7866e https://www.encodeproject.org/files/ENCFF738ZMP/@@download/ENCFF738ZMP.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF054QKH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 1141221962 ENCODE Processing Pipeline 16482da499c4e488f4c49867e4b62660 https://www.encodeproject.org/files/ENCFF054QKH/@@download/ENCFF054QKH.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF426HFK bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 869664849 ENCODE Processing Pipeline 0c51d0da1d014e3c096652dccb2f23c0 https://www.encodeproject.org/files/ENCFF426HFK/@@download/ENCFF426HFK.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF813HXP bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 1066865256 ENCODE Processing Pipeline 4711b2f91200e30b8b53d6089929417d https://www.encodeproject.org/files/ENCFF813HXP/@@download/ENCFF813HXP.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF268BCD bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 737375351 ENCODE Processing Pipeline 8ec03a6efd1c7980b703a4224d26a92d https://www.encodeproject.org/files/ENCFF268BCD/@@download/ENCFF268BCD.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF435JXH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 1090185106 ENCODE Processing Pipeline 736287690931cd6fabb3805c4c375810 https://www.encodeproject.org/files/ENCFF435JXH/@@download/ENCFF435JXH.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF336YAH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 1259602243 ENCODE Processing Pipeline fc1d30f0108e663bac983f5a04b451ed https://www.encodeproject.org/files/ENCFF336YAH/@@download/ENCFF336YAH.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF781PNM bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 1061600593 ENCODE Processing Pipeline 809b8eff57116e25b2b71c26cf09c5fb https://www.encodeproject.org/files/ENCFF781PNM/@@download/ENCFF781PNM.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF431WYM bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 741249401 ENCODE Processing Pipeline 9a33d28745e083c17b695fd85e140ae7 https://www.encodeproject.org/files/ENCFF431WYM/@@download/ENCFF431WYM.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF199ZUV bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 1067005905 ENCODE Processing Pipeline dc2576b2b3309cb5b5c920a24fdf6022 https://www.encodeproject.org/files/ENCFF199ZUV/@@download/ENCFF199ZUV.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF056UDK bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 5636506 ENCODE Processing Pipeline 41b22f4b70c794819cdfadefab64c592 https://www.encodeproject.org/files/ENCFF056UDK/@@download/ENCFF056UDK.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF384BWK bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 1387985143 ENCODE Processing Pipeline 12d985bf38757602c30562cd736d4af5 https://www.encodeproject.org/files/ENCFF384BWK/@@download/ENCFF384BWK.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF093KXQ bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF056UDK 13494198 ENCODE Processing Pipeline f4e63f2947f659b5983ac18005d5b45f https://www.encodeproject.org/files/ENCFF093KXQ/@@download/ENCFF093KXQ.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF386BDU bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 6287026 ENCODE Processing Pipeline ae7046364352a57349dda79765441f5a https://www.encodeproject.org/files/ENCFF386BDU/@@download/ENCFF386BDU.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF664LBN bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 1357937857 ENCODE Processing Pipeline 1bafb226e65b9c2b963c9d5847d25522 https://www.encodeproject.org/files/ENCFF664LBN/@@download/ENCFF664LBN.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF309TFY bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF386BDU 13626286 ENCODE Processing Pipeline e2c9382faa428ddf2bb26e2bc9c70a0f https://www.encodeproject.org/files/ENCFF309TFY/@@download/ENCFF309TFY.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF784FUU bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF684QPN 13406895 ENCODE Processing Pipeline f56cb4335e99add2e58f8512631b2ca1 https://www.encodeproject.org/files/ENCFF784FUU/@@download/ENCFF784FUU.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF655FLB bigBed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF096XRG 339605 ENCODE Processing Pipeline 25d5d2b277b42e9baea23484fec46d73 https://www.encodeproject.org/files/ENCFF655FLB/@@download/ENCFF655FLB.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF132JCL bigBed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF527XHG 234558 ENCODE Processing Pipeline bb0c7a37919e6b3a41183cf1a3297087 https://www.encodeproject.org/files/ENCFF132JCL/@@download/ENCFF132JCL.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF217GDM bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 6279347 ENCODE Processing Pipeline ad8ea3b2b4fa06a29b27ce0434f9a526 https://www.encodeproject.org/files/ENCFF217GDM/@@download/ENCFF217GDM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF735DJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF092GMD 248839 ENCODE Processing Pipeline 0d7bd1201cbedad639852a1785584d7b https://www.encodeproject.org/files/ENCFF735DJZ/@@download/ENCFF735DJZ.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF413AVP bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 6738616 ENCODE Processing Pipeline 57ce3c48ca25be9340e6a0a0b89f7e24 https://www.encodeproject.org/files/ENCFF413AVP/@@download/ENCFF413AVP.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF684QPN bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 5914572 ENCODE Processing Pipeline 6b8a24098c28824fb58252e4986c6a31 https://www.encodeproject.org/files/ENCFF684QPN/@@download/ENCFF684QPN.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF096XRG bed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF056UDK, ENCFF386BDU, ENCFF413AVP, ENCFF419RSJ 134070 ENCODE Processing Pipeline 09621cf52ce936bec51f40622f0870ab https://www.encodeproject.org/files/ENCFF096XRG/@@download/ENCFF096XRG.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF189CXF bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF413AVP 13464090 ENCODE Processing Pipeline 138c3279e5976137cc894590487987ee https://www.encodeproject.org/files/ENCFF189CXF/@@download/ENCFF189CXF.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF092GMD bed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF056UDK, ENCFF386BDU, ENCFF413AVP, ENCFF419RSJ 109901 ENCODE Processing Pipeline d63289aa4cf72a528580cb91e237a5ba https://www.encodeproject.org/files/ENCFF092GMD/@@download/ENCFF092GMD.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF801ULT bed narrowPeak peaks and background as input for IDR ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 6869005 ENCODE Processing Pipeline 1377b3f2fd0dc022e31a67c7c6407ccc https://www.encodeproject.org/files/ENCFF801ULT/@@download/ENCFF801ULT.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF535DQH bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF217GDM 13586840 ENCODE Processing Pipeline 4fb5663accaafb6c184c5fdac4128afc https://www.encodeproject.org/files/ENCFF535DQH/@@download/ENCFF535DQH.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF261BWU bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF801ULT 13355094 ENCODE Processing Pipeline 4cba2146f2b8ef3f231ba17d479643bf https://www.encodeproject.org/files/ENCFF261BWU/@@download/ENCFF261BWU.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF917CXD bed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF217GDM, ENCFF684QPN, ENCFF801ULT 136236 ENCODE Processing Pipeline 80e778a2362eb91eb3f36ec00813c9d6 https://www.encodeproject.org/files/ENCFF917CXD/@@download/ENCFF917CXD.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF527XHG bed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF217GDM, ENCFF684QPN, ENCFF801ULT 101110 ENCODE Processing Pipeline cf1d063b6ca6d1a88ef09326759479a7 https://www.encodeproject.org/files/ENCFF527XHG/@@download/ENCFF527XHG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF818IPG bigBed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF917CXD 341603 ENCODE Processing Pipeline 6cedc1b5816bbe839faf367b5735cd1e https://www.encodeproject.org/files/ENCFF818IPG/@@download/ENCFF818IPG.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF496IOG bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF807MUK, ENCFF881QTR 6864559879 ENCODE Processing Pipeline 03ebe4e19973acd06702a8e782d640f4 https://www.encodeproject.org/files/ENCFF496IOG/@@download/ENCFF496IOG.bam hg19 released ENCFF611NOA bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF724KPM, ENCFF807MUK, ENCFF863GNT 5599833727 ENCODE Processing Pipeline e9351d994d1c5ef8763401064c05914f https://www.encodeproject.org/files/ENCFF611NOA/@@download/ENCFF611NOA.bam hg19 released ENCFF863GNT fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF724KPM 2639663861 Michael Snyder, Stanford b4c3f44057f989824c260a2555ee89d9 SRA:SRR5111424 https://www.encodeproject.org/files/ENCFF863GNT/@@download/ENCFF863GNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF724KPM fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF863GNT 2569325379 Michael Snyder, Stanford 6501700db6a387d5a8db78d8341d099a SRA:SRR5111424 https://www.encodeproject.org/files/ENCFF724KPM/@@download/ENCFF724KPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF485UKV fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF881QTR 3185240813 Michael Snyder, Stanford 3128a3b123cda01cede94b1744be1330 SRA:SRR5111423 https://www.encodeproject.org/files/ENCFF485UKV/@@download/ENCFF485UKV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF881QTR fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF485UKV 3260774220 Michael Snyder, Stanford c6c0bdf602521d8c9ee519e8d7e43658 SRA:SRR5111423 https://www.encodeproject.org/files/ENCFF881QTR/@@download/ENCFF881QTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF784FIO bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF724KPM, ENCFF807MUK, ENCFF863GNT 4350279725 ENCODE Processing Pipeline 1cd169e25c4bb9eadc235cc5315e89b8 https://www.encodeproject.org/files/ENCFF784FIO/@@download/ENCFF784FIO.bam hg19 released ENCFF282JRK bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF485UKV, ENCFF807MUK, ENCFF881QTR 5495085832 ENCODE Processing Pipeline 872d6a355a1d5f314dd2d91ce7780448 https://www.encodeproject.org/files/ENCFF282JRK/@@download/ENCFF282JRK.bam hg19 released ENCFF399VDI bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 1129249236 ENCODE Processing Pipeline 57d3c889e6d1a4b7c1d7a246e00dfb1c https://www.encodeproject.org/files/ENCFF399VDI/@@download/ENCFF399VDI.bigWig hg19 released ENCFF769NXS bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 1481023593 ENCODE Processing Pipeline 14ae29e0bbafa03326e8e7637cb0c570 https://www.encodeproject.org/files/ENCFF769NXS/@@download/ENCFF769NXS.bigWig hg19 released ENCFF333QOF bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 1388018131 ENCODE Processing Pipeline 8ae0f34f643e5e3cf8a6ca69f3d6e5b3 https://www.encodeproject.org/files/ENCFF333QOF/@@download/ENCFF333QOF.bigWig hg19 released ENCFF055NJR bed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF174HNI, ENCFF211SVA, ENCFF635TWM 704612 ENCODE Processing Pipeline 983d50b2025e7cdf2bf584b28e2275d6 https://www.encodeproject.org/files/ENCFF055NJR/@@download/ENCFF055NJR.bed.gz hg19 released ENCFF435VUV bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 1006318522 ENCODE Processing Pipeline 5238fdc69153a415425e1edabae6f293 https://www.encodeproject.org/files/ENCFF435VUV/@@download/ENCFF435VUV.bigWig hg19 released ENCFF039YMB bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF211SVA 12893135 ENCODE Processing Pipeline 0788b402bd28c5da7b7178f3f93c2e60 https://www.encodeproject.org/files/ENCFF039YMB/@@download/ENCFF039YMB.bigBed hg19 released ENCFF710VQZ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 1155362310 ENCODE Processing Pipeline e5e113f5febf58fc8379badc78366a00 https://www.encodeproject.org/files/ENCFF710VQZ/@@download/ENCFF710VQZ.bigWig hg19 released ENCFF635TWM bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 7225063 ENCODE Processing Pipeline d49e7f439f2c62531e91369254d32009 https://www.encodeproject.org/files/ENCFF635TWM/@@download/ENCFF635TWM.bed.gz hg19 released ENCFF081XCC bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF635TWM 12779848 ENCODE Processing Pipeline cdaef61794cf092a33b32b7a0bb861f4 https://www.encodeproject.org/files/ENCFF081XCC/@@download/ENCFF081XCC.bigBed hg19 released ENCFF243AQY bigBed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF257OPZ 1451228 ENCODE Processing Pipeline bcb4af347fcf2f39cc6cf43f9ec0a1cc https://www.encodeproject.org/files/ENCFF243AQY/@@download/ENCFF243AQY.bigBed hg19 released ENCFF601VCM bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 1871597241 ENCODE Processing Pipeline 0473e2ed911c1cfd615db53d285bbad7 https://www.encodeproject.org/files/ENCFF601VCM/@@download/ENCFF601VCM.bigWig hg19 released ENCFF174HNI bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 6989177 ENCODE Processing Pipeline e0dc0395c4fcbd87d364ab2b3661eced https://www.encodeproject.org/files/ENCFF174HNI/@@download/ENCFF174HNI.bed.gz hg19 released ENCFF211SVA bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 6924816 ENCODE Processing Pipeline 5528a183e778bf623e56668345a1f83d https://www.encodeproject.org/files/ENCFF211SVA/@@download/ENCFF211SVA.bed.gz hg19 released ENCFF765EBK bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF174HNI 12832601 ENCODE Processing Pipeline c5ab169fc7fc20d0f381e34cd5c6305b https://www.encodeproject.org/files/ENCFF765EBK/@@download/ENCFF765EBK.bigBed hg19 released ENCFF257OPZ bed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF174HNI, ENCFF211SVA, ENCFF635TWM 678523 ENCODE Processing Pipeline 9abb0314463e065dfc4d65defa687423 https://www.encodeproject.org/files/ENCFF257OPZ/@@download/ENCFF257OPZ.bed.gz hg19 released ENCFF774BQI bigBed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF055NJR 1504226 ENCODE Processing Pipeline 21dfb5512ab1669f20dc9d75e1b9c9b4 https://www.encodeproject.org/files/ENCFF774BQI/@@download/ENCFF774BQI.bigBed hg19 released ENCFF384CXB bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF724KPM, ENCFF863GNT 5601295288 ENCODE Processing Pipeline 5cd74e01e8d76f936d1609cf6c48dfb2 https://www.encodeproject.org/files/ENCFF384CXB/@@download/ENCFF384CXB.bam GRCh38 released ENCFF727ATN bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF643CGH, ENCFF881QTR 6866495846 ENCODE Processing Pipeline fe4f563a5620eda6dd795d56f942787a https://www.encodeproject.org/files/ENCFF727ATN/@@download/ENCFF727ATN.bam GRCh38 released ENCFF382USC bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF724KPM, ENCFF863GNT 4357820758 ENCODE Processing Pipeline 378d6ff843d692113680cdbeeb59bce5 https://www.encodeproject.org/files/ENCFF382USC/@@download/ENCFF382USC.bam GRCh38 released ENCFF722EAP bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF643CGH, ENCFF881QTR 5503884084 ENCODE Processing Pipeline fc0ff15a094b95d221c1df6a8d4d917b https://www.encodeproject.org/files/ENCFF722EAP/@@download/ENCFF722EAP.bam GRCh38 released ENCFF527OCV bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 1383067557 ENCODE Processing Pipeline 504a80a60785ddf37e0374bddb261aa2 https://www.encodeproject.org/files/ENCFF527OCV/@@download/ENCFF527OCV.bigWig GRCh38 released ENCFF415UPO bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 1108513738 ENCODE Processing Pipeline 606cf04cbb0a003ea7ba84f11b02b5e2 https://www.encodeproject.org/files/ENCFF415UPO/@@download/ENCFF415UPO.bigWig GRCh38 released ENCFF506WXJ bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 1510908176 ENCODE Processing Pipeline 1534c029eb8c744fbdbf381cd0cb2c40 https://www.encodeproject.org/files/ENCFF506WXJ/@@download/ENCFF506WXJ.bigWig GRCh38 released ENCFF947NHL bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 1333248021 ENCODE Processing Pipeline c940e6e338174c3256c91afc9b74116e https://www.encodeproject.org/files/ENCFF947NHL/@@download/ENCFF947NHL.bigWig GRCh38 released ENCFF481AJQ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 1165874982 ENCODE Processing Pipeline f21f7505a8cb11b7e73f48c741b6ddac https://www.encodeproject.org/files/ENCFF481AJQ/@@download/ENCFF481AJQ.bigWig GRCh38 released ENCFF355PIJ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 1905802489 ENCODE Processing Pipeline acaa6ad4cfeb2271ec74dcb3d738139b https://www.encodeproject.org/files/ENCFF355PIJ/@@download/ENCFF355PIJ.bigWig GRCh38 released ENCFF444AXF bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 6892632 ENCODE Processing Pipeline d6139e501b7b802889adc46eb9b04285 https://www.encodeproject.org/files/ENCFF444AXF/@@download/ENCFF444AXF.bed.gz GRCh38 released ENCFF021IFH bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 6910991 ENCODE Processing Pipeline 82a1d18d4f9fc89d345d426eb866048a https://www.encodeproject.org/files/ENCFF021IFH/@@download/ENCFF021IFH.bed.gz GRCh38 released ENCFF184KVH bed narrowPeak peaks and background as input for IDR ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 7280057 ENCODE Processing Pipeline 7daaa03d4497b5569918616b21ca1002 https://www.encodeproject.org/files/ENCFF184KVH/@@download/ENCFF184KVH.bed.gz GRCh38 released ENCFF743CPC bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF444AXF 12769391 ENCODE Processing Pipeline 9124495d99e8bef94ea75456db09f6d3 https://www.encodeproject.org/files/ENCFF743CPC/@@download/ENCFF743CPC.bigBed GRCh38 released ENCFF256YZH bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF021IFH 12954620 ENCODE Processing Pipeline 16b6f53632c7a7cc61b342c3ab60b04d https://www.encodeproject.org/files/ENCFF256YZH/@@download/ENCFF256YZH.bigBed GRCh38 released ENCFF788YLM bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF184KVH 12845828 ENCODE Processing Pipeline 5daa8ac0f6093111a07beb9bae154172 https://www.encodeproject.org/files/ENCFF788YLM/@@download/ENCFF788YLM.bigBed GRCh38 released ENCFF400GKD bed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF021IFH, ENCFF184KVH, ENCFF419RSJ, ENCFF444AXF 700911 ENCODE Processing Pipeline b2cf599066ba8970699e5c989c5a9ed0 https://www.encodeproject.org/files/ENCFF400GKD/@@download/ENCFF400GKD.bed.gz GRCh38 released ENCFF857RRH bigBed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF400GKD 1485065 ENCODE Processing Pipeline 5b9eb51aa8d4d369875079b450ba5d57 https://www.encodeproject.org/files/ENCFF857RRH/@@download/ENCFF857RRH.bigBed GRCh38 released ENCFF811VEN bed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF021IFH, ENCFF184KVH, ENCFF419RSJ, ENCFF444AXF 707718 ENCODE Processing Pipeline 5c2306896a7fa321eecaaebb02b29740 https://www.encodeproject.org/files/ENCFF811VEN/@@download/ENCFF811VEN.bed.gz GRCh38 released ENCFF949VNS bigBed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF811VEN 1508923 ENCODE Processing Pipeline 928bbc2c520c109970cb1a87319110cf https://www.encodeproject.org/files/ENCFF949VNS/@@download/ENCFF949VNS.bigBed GRCh38 released ENCFF000NWF bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NWT 824439542 Richard Myers, HAIB 4e904d1bb23042695bdd045f2cbc46f9 https://www.encodeproject.org/files/ENCFF000NWF/@@download/ENCFF000NWF.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWH bigBed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXG 551037 Richard Myers, HAIB 8eb85edb685f72464029ec6c9a465f91 https://www.encodeproject.org/files/ENCFF000NWH/@@download/ENCFF000NWH.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWI bigBed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXH 628345 Richard Myers, HAIB e1a63318adf5ca156c6f895c161a1d1e https://www.encodeproject.org/files/ENCFF000NWI/@@download/ENCFF000NWI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWJ bigWig raw signal ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 16120086 Richard Myers, HAIB 1e5f4068cd8c3603a6f55f64f8296175 https://www.encodeproject.org/files/ENCFF000NWJ/@@download/ENCFF000NWJ.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NWK bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NWV 967009304 Richard Myers, HAIB 012abc81238109e9790a9024328d08ff https://www.encodeproject.org/files/ENCFF000NWK/@@download/ENCFF000NWK.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWL bigWig raw signal ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 21467479 Richard Myers, HAIB 7a6588eb647cbcc29ff80c1254b31bad https://www.encodeproject.org/files/ENCFF000NWL/@@download/ENCFF000NWL.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NWT fastq reads ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 870825486 Richard Myers, HAIB e011367659917a655f073ac80ee4f91e https://www.encodeproject.org/files/ENCFF000NWT/@@download/ENCFF000NWT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NWV fastq reads ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1035627302 Richard Myers, HAIB ff1932701763aee22984b5a951febd83 https://www.encodeproject.org/files/ENCFF000NWV/@@download/ENCFF000NWV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TXG bed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 339348 Richard Myers, HAIB 03aceacdeaa397aaf3b9aac9965c4123 https://www.encodeproject.org/files/ENCFF001TXG/@@download/ENCFF001TXG.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TXH bed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 401778 Richard Myers, HAIB 0644524f5f3062c61fa14e97648187ad https://www.encodeproject.org/files/ENCFF001TXH/@@download/ENCFF001TXH.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CHB bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 358811 ENCODE Consortium Analysis Working Group 9e2708daf73a8a5e361e6ef88e8bb464 https://www.encodeproject.org/files/ENCFF002CHB/@@download/ENCFF002CHB.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF307HMP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHB 817179 ENCODE Consortium 2910e316232417ddb43ae7763cbc588c https://www.encodeproject.org/files/ENCFF307HMP/@@download/ENCFF307HMP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF028SCM bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF643CGH 1113335001 ENCODE Processing Pipeline 5a79c4a2fb825627512cc27291934e6f https://www.encodeproject.org/files/ENCFF028SCM/@@download/ENCFF028SCM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF240MQI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF643CGH 644643687 ENCODE Processing Pipeline 1c20ff0def323dcbaf162273da622bc1 https://www.encodeproject.org/files/ENCFF240MQI/@@download/ENCFF240MQI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF888PAI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF643CGH 766004482 ENCODE Processing Pipeline 9a381fee1a0f451d1c09fcdd2391b548 https://www.encodeproject.org/files/ENCFF888PAI/@@download/ENCFF888PAI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF358CPI bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF643CGH 1315266088 ENCODE Processing Pipeline daf751177b0c51f3df3ea7d06107d44c https://www.encodeproject.org/files/ENCFF358CPI/@@download/ENCFF358CPI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF077CHK bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF807MUK 1110036095 ENCODE Processing Pipeline 0ada5903dc30146faccc8a75547cf27e https://www.encodeproject.org/files/ENCFF077CHK/@@download/ENCFF077CHK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF356JEO bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF807MUK 640952733 ENCODE Processing Pipeline 8e463d84ea86834b6494196537061722 https://www.encodeproject.org/files/ENCFF356JEO/@@download/ENCFF356JEO.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF056SZK bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF807MUK 1310788835 ENCODE Processing Pipeline d333e04eedf89604e6d052cb94e3b2d5 https://www.encodeproject.org/files/ENCFF056SZK/@@download/ENCFF056SZK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF732SBB bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF807MUK 760267172 ENCODE Processing Pipeline 5ee214365c432e750a39372692e2a021 https://www.encodeproject.org/files/ENCFF732SBB/@@download/ENCFF732SBB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF224TTO bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 511164791 ENCODE Processing Pipeline b8127a2bdd4a925a705c4a4462ee5271 https://www.encodeproject.org/files/ENCFF224TTO/@@download/ENCFF224TTO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF027BBC bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 430013921 ENCODE Processing Pipeline b9fd321d59ee4cc4d88c194b5c898503 https://www.encodeproject.org/files/ENCFF027BBC/@@download/ENCFF027BBC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF511TJU bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 343890248 ENCODE Processing Pipeline f8ee721a448c5652e42d63a3ba2f558b https://www.encodeproject.org/files/ENCFF511TJU/@@download/ENCFF511TJU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF255OTO bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 862095165 ENCODE Processing Pipeline 69b29b498ce89f9e4e5141ecc3e7a139 https://www.encodeproject.org/files/ENCFF255OTO/@@download/ENCFF255OTO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF073JYX bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 309702919 ENCODE Processing Pipeline 13bca6f390a90f2e92bcea16d90120de https://www.encodeproject.org/files/ENCFF073JYX/@@download/ENCFF073JYX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF185INW bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 741051636 ENCODE Processing Pipeline 7cd7a49509bf7e13c84545f6ce5dac1f https://www.encodeproject.org/files/ENCFF185INW/@@download/ENCFF185INW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF944GNM bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 5067106 ENCODE Processing Pipeline 5468ae53970173483242c32e37204766 https://www.encodeproject.org/files/ENCFF944GNM/@@download/ENCFF944GNM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF089TUG bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 4929526 ENCODE Processing Pipeline d927d47628609ca867531933148023ed https://www.encodeproject.org/files/ENCFF089TUG/@@download/ENCFF089TUG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF119FVK bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF944GNM 10870010 ENCODE Processing Pipeline 90ed2f5892e3789e80bfcb62f1d3a68f https://www.encodeproject.org/files/ENCFF119FVK/@@download/ENCFF119FVK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF826OPY bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 6014158 ENCODE Processing Pipeline 5ac5fbf1d8a09abf546a16f47263182d https://www.encodeproject.org/files/ENCFF826OPY/@@download/ENCFF826OPY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF588FKS bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089TUG 10699875 ENCODE Processing Pipeline 8f65eb9e0cf67b32551efd5342c75be2 https://www.encodeproject.org/files/ENCFF588FKS/@@download/ENCFF588FKS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF134TRQ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF826OPY 13201388 ENCODE Processing Pipeline 042f69e631882344922c67f7ac84969e https://www.encodeproject.org/files/ENCFF134TRQ/@@download/ENCFF134TRQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF393ZEE bed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089TUG, ENCFF419RSJ, ENCFF826OPY, ENCFF944GNM 318424 ENCODE Processing Pipeline 12b4d328c97c1fb18048d745b51bc8bc https://www.encodeproject.org/files/ENCFF393ZEE/@@download/ENCFF393ZEE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF049SZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF720YMW 669895 ENCODE Processing Pipeline 6effdadce16dcad00018448622e26c9d https://www.encodeproject.org/files/ENCFF049SZR/@@download/ENCFF049SZR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF865RMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393ZEE 603919 ENCODE Processing Pipeline e5af43cd2fd3b2cdb796cabf28467328 https://www.encodeproject.org/files/ENCFF865RMQ/@@download/ENCFF865RMQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF720YMW bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089TUG, ENCFF419RSJ, ENCFF826OPY, ENCFF944GNM 366567 ENCODE Processing Pipeline ace1fb5b44c14612084d7bf52d7561bd https://www.encodeproject.org/files/ENCFF720YMW/@@download/ENCFF720YMW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF587YRC bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 312336589 ENCODE Processing Pipeline 768d6f54235b454c974e4a2da3b6f855 https://www.encodeproject.org/files/ENCFF587YRC/@@download/ENCFF587YRC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF717AEH bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 439213255 ENCODE Processing Pipeline 63166a794af738abe3b150d5da9ce15f https://www.encodeproject.org/files/ENCFF717AEH/@@download/ENCFF717AEH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF291ILI bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 747941053 ENCODE Processing Pipeline 3e7f839e5aabc39858497f0201bcfcc2 https://www.encodeproject.org/files/ENCFF291ILI/@@download/ENCFF291ILI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF379LXD bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 5008996 ENCODE Processing Pipeline 844d8d751abcaff398aa423ae8a993e9 https://www.encodeproject.org/files/ENCFF379LXD/@@download/ENCFF379LXD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF438FXZ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379LXD 10804793 ENCODE Processing Pipeline c3ac5771832b972943d09a4e9205f017 https://www.encodeproject.org/files/ENCFF438FXZ/@@download/ENCFF438FXZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF708VKT bed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF379LXD, ENCFF713DPM, ENCFF947MLS 315101 ENCODE Processing Pipeline b6b0d325ed2169805f43683f229211e5 https://www.encodeproject.org/files/ENCFF708VKT/@@download/ENCFF708VKT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF780CPZ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF947MLS 10719358 ENCODE Processing Pipeline 0e5d3f55a8199564c39c7b18d6093d1c https://www.encodeproject.org/files/ENCFF780CPZ/@@download/ENCFF780CPZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441OMT bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 421472820 ENCODE Processing Pipeline c34b5b0fe74dc2729ef546236eae84fa https://www.encodeproject.org/files/ENCFF441OMT/@@download/ENCFF441OMT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF226EOB bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 346186898 ENCODE Processing Pipeline a3a4be45abe11c3441e6203b142b9e8d https://www.encodeproject.org/files/ENCFF226EOB/@@download/ENCFF226EOB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF620GIC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF708VKT 598837 ENCODE Processing Pipeline ab6ef2ee9ee967f78bbb140889b0a9b7 https://www.encodeproject.org/files/ENCFF620GIC/@@download/ENCFF620GIC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF472MAK bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 954824806 ENCODE Processing Pipeline af994e164aacf7712ac1eb3bd36f6329 https://www.encodeproject.org/files/ENCFF472MAK/@@download/ENCFF472MAK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF947MLS bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 4944540 ENCODE Processing Pipeline 23cacd9104eb0e6ac4bddb8c98fccb78 https://www.encodeproject.org/files/ENCFF947MLS/@@download/ENCFF947MLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF713DPM bed narrowPeak peaks and background as input for IDR ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 6017568 ENCODE Processing Pipeline 159b051003d96a1c0f806650743779cb https://www.encodeproject.org/files/ENCFF713DPM/@@download/ENCFF713DPM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF138SZJ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF713DPM 13192116 ENCODE Processing Pipeline 596f6016236cc8a58952e3d07345ce3d https://www.encodeproject.org/files/ENCFF138SZJ/@@download/ENCFF138SZJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF391DVL bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF379LXD, ENCFF713DPM, ENCFF947MLS 370386 ENCODE Processing Pipeline 0a0c836f56faf01dc5a94b69720edee9 https://www.encodeproject.org/files/ENCFF391DVL/@@download/ENCFF391DVL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF151JVV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF391DVL 673505 ENCODE Processing Pipeline 2146a52a28091ce7384ba38ac12f13f5 https://www.encodeproject.org/files/ENCFF151JVV/@@download/ENCFF151JVV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000OBJ bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBU 1348804394 Richard Myers, HAIB b160ac79cbc69e3e2856b58214fcc121 https://www.encodeproject.org/files/ENCFF000OBJ/@@download/ENCFF000OBJ.bam hg19 released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF000OBM bigBed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYO 1429056 Richard Myers, HAIB 7fb9ae25944056d7cfec511929df5b49 https://www.encodeproject.org/files/ENCFF000OBM/@@download/ENCFF000OBM.bigBed hg19 released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF000OBN bigBed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 ENCFF001TYP 544986 Richard Myers, HAIB c9ea5e31515538547f8a9efc5ecbd6ed https://www.encodeproject.org/files/ENCFF000OBN/@@download/ENCFF000OBN.bigBed hg19 released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF000OBO bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 ENCFF000OBS 1327495223 Richard Myers, HAIB b6ae67932f7c18b76a9a2accd83b3d92 https://www.encodeproject.org/files/ENCFF000OBO/@@download/ENCFF000OBO.bam hg19 released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF000OBR bigWig raw signal ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 61477882 Richard Myers, HAIB cd9d169d7651312a3383d08f92321e38 https://www.encodeproject.org/files/ENCFF000OBR/@@download/ENCFF000OBR.bigWig hg19 released low read length missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF000OBS fastq reads ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 36 single-ended 1195999211 Richard Myers, HAIB b8d99ff7f031394dc3d6fd11fa094c2e https://www.encodeproject.org/files/ENCFF000OBS/@@download/ENCFF000OBS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF000OBT bigWig raw signal ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 23509883 Richard Myers, HAIB 97ec220d090f50d15d135aa02377f8a8 https://www.encodeproject.org/files/ENCFF000OBT/@@download/ENCFF000OBT.bigWig hg19 released low read length missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF000OBU fastq reads ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1764589631 Richard Myers, HAIB a61eda5b147d4dd248268f03d9b8bd8c https://www.encodeproject.org/files/ENCFF000OBU/@@download/ENCFF000OBU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF001TYO bed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 974658 Richard Myers, HAIB 84c669ce29565315b92ab9604490355d https://www.encodeproject.org/files/ENCFF001TYO/@@download/ENCFF001TYO.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF001TYP bed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 325787 Richard Myers, HAIB 72b36449490e770930adf38efa64ed68 https://www.encodeproject.org/files/ENCFF001TYP/@@download/ENCFF001TYP.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF002CHQ bed narrowPeak optimal idr thresholded peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 898654 ENCODE Consortium Analysis Working Group 7bfcaceb2634fd60e68d9c6730a55f7b https://www.encodeproject.org/files/ENCFF002CHQ/@@download/ENCFF002CHQ.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from, biological replicates with identical biosample ENCFF819BRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHQ 1895900 ENCODE Consortium 4fad0855a33855c38ddaa72391650d8e https://www.encodeproject.org/files/ENCFF819BRD/@@download/ENCFF819BRD.bigBed hg19 released low read length missing raw data in replicate, biological replicates with identical biosample ENCFF239SIO fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF871KIO 3674751206 Michael Snyder, Stanford c973c1c18c2c47607c9ce271e374924e https://www.encodeproject.org/files/ENCFF239SIO/@@download/ENCFF239SIO.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF871KIO fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF239SIO 4089009941 Michael Snyder, Stanford c4c77679d4b1353b57efc2d3e47791f9 https://www.encodeproject.org/files/ENCFF871KIO/@@download/ENCFF871KIO.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF928EJZ fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 1 100 paired-ended 2 ENCFF545WZD 4311410526 Michael Snyder, Stanford dc78490b0bf2a518b2765f4dd9275f8e https://www.encodeproject.org/files/ENCFF928EJZ/@@download/ENCFF928EJZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF545WZD fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 1 100 paired-ended 1 ENCFF928EJZ 3873116306 Michael Snyder, Stanford 314ed65fdfd0ce912fc9e82a2061660f https://www.encodeproject.org/files/ENCFF545WZD/@@download/ENCFF545WZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF827JLT bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF807MUK, ENCFF871KIO 6621115746 ENCODE Processing Pipeline 5f0022cac4ac8149e1ff4f50623b0e35 https://www.encodeproject.org/files/ENCFF827JLT/@@download/ENCFF827JLT.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF456UYW bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF643CGH, ENCFF871KIO 6618118810 ENCODE Processing Pipeline e0ea785020a242612c716955f386ac03 https://www.encodeproject.org/files/ENCFF456UYW/@@download/ENCFF456UYW.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF966TTY bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF643CGH, ENCFF928EJZ 7241761460 ENCODE Processing Pipeline e310e021237cbb945037b78a9d815603 https://www.encodeproject.org/files/ENCFF966TTY/@@download/ENCFF966TTY.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF062BUR bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF807MUK, ENCFF928EJZ 7242036025 ENCODE Processing Pipeline 4595a746ad1beab98a827f42f71c5b93 https://www.encodeproject.org/files/ENCFF062BUR/@@download/ENCFF062BUR.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF400NRC bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF807MUK, ENCFF871KIO 3555424313 ENCODE Processing Pipeline 3fd86912d0f7a8bc7eb851bf8f087769 https://www.encodeproject.org/files/ENCFF400NRC/@@download/ENCFF400NRC.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF413UKW bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF807MUK, ENCFF928EJZ 4357537660 ENCODE Processing Pipeline 2b55d9acd46e48bb635f09fba38e0732 https://www.encodeproject.org/files/ENCFF413UKW/@@download/ENCFF413UKW.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF094RVF bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF643CGH, ENCFF871KIO 3560103909 ENCODE Processing Pipeline 1447f2a22de63acc2e12f7dc1d1a8fc7 https://www.encodeproject.org/files/ENCFF094RVF/@@download/ENCFF094RVF.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF946NSO bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF643CGH, ENCFF928EJZ 4363090811 ENCODE Processing Pipeline fcd47889fdb741eab39844cfb9513e6f https://www.encodeproject.org/files/ENCFF946NSO/@@download/ENCFF946NSO.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF236FIA bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 1052142898 ENCODE Processing Pipeline f372572b20ce39c5ef7b64e29e035466 https://www.encodeproject.org/files/ENCFF236FIA/@@download/ENCFF236FIA.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF406XIC bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1495957887 ENCODE Processing Pipeline 8136eb3cb6cd2c7e745dc4fb3b87cdc9 https://www.encodeproject.org/files/ENCFF406XIC/@@download/ENCFF406XIC.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF358MLJ bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1887346687 ENCODE Processing Pipeline 01eba8073df29b7075d322f31675884f https://www.encodeproject.org/files/ENCFF358MLJ/@@download/ENCFF358MLJ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF521ION bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 1297996859 ENCODE Processing Pipeline a2f4da5b167f2f7e8fd66f2857d27376 https://www.encodeproject.org/files/ENCFF521ION/@@download/ENCFF521ION.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF139PCN bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1892254837 ENCODE Processing Pipeline 47ce1d61ea65f23821d3b7a856474641 https://www.encodeproject.org/files/ENCFF139PCN/@@download/ENCFF139PCN.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF463YMM bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 2334225605 ENCODE Processing Pipeline d3d7ed615f4fdf5aa21a146fc870d19f https://www.encodeproject.org/files/ENCFF463YMM/@@download/ENCFF463YMM.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF350LWS bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 6593975 ENCODE Processing Pipeline 5d042bfd10651e0eaa3f9752367e2e13 https://www.encodeproject.org/files/ENCFF350LWS/@@download/ENCFF350LWS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF769CZK bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7051051 ENCODE Processing Pipeline 7beb67f9bab7888ff35378531645d6bc https://www.encodeproject.org/files/ENCFF769CZK/@@download/ENCFF769CZK.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF611QCT bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF769CZK 13244437 ENCODE Processing Pipeline f171d0984422ffbeb0c20bb984555746 https://www.encodeproject.org/files/ENCFF611QCT/@@download/ENCFF611QCT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF268ECX bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7232422 ENCODE Processing Pipeline c9ddc2b9734ffebfadbae7b33aca7372 https://www.encodeproject.org/files/ENCFF268ECX/@@download/ENCFF268ECX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF018SCK bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF350LWS 11106804 ENCODE Processing Pipeline 1fa98daaf9f56eaa1c3d06780befd5d4 https://www.encodeproject.org/files/ENCFF018SCK/@@download/ENCFF018SCK.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF948RIA bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF268ECX 13160468 ENCODE Processing Pipeline 6080aeb57c7b6ceff572ac9ac3c53fe5 https://www.encodeproject.org/files/ENCFF948RIA/@@download/ENCFF948RIA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF811HKX bigBed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF890HDX 150413 ENCODE Processing Pipeline 0065d0b6ac2e8de6e67f75a0fcf47002 https://www.encodeproject.org/files/ENCFF811HKX/@@download/ENCFF811HKX.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF890HDX bed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF268ECX, ENCFF350LWS, ENCFF769CZK 46332 ENCODE Processing Pipeline d5981149e428091b0580deba65fcd932 https://www.encodeproject.org/files/ENCFF890HDX/@@download/ENCFF890HDX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF455YHJ bed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF268ECX, ENCFF350LWS, ENCFF769CZK 73718 ENCODE Processing Pipeline 2598e2b4d1582b2d4fd97e93d48f9d08 https://www.encodeproject.org/files/ENCFF455YHJ/@@download/ENCFF455YHJ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF296URW bigBed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF455YHJ 195706 ENCODE Processing Pipeline f2bf98330599cafd468d98daabc1c362 https://www.encodeproject.org/files/ENCFF296URW/@@download/ENCFF296URW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF199EAZ bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 1244335210 ENCODE Processing Pipeline b34d47ba87729575a5a67c22aa117cb6 https://www.encodeproject.org/files/ENCFF199EAZ/@@download/ENCFF199EAZ.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF120TYU bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 1801658331 ENCODE Processing Pipeline 1e32c9e5a34a830650d7b19170e91ced https://www.encodeproject.org/files/ENCFF120TYU/@@download/ENCFF120TYU.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF794WZB bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 2209762251 ENCODE Processing Pipeline c79d03035255c3b451c24fa6f881afc5 https://www.encodeproject.org/files/ENCFF794WZB/@@download/ENCFF794WZB.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF377HNT bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 1306043630 ENCODE Processing Pipeline 5c52c55f11552115775559b3165d89d2 https://www.encodeproject.org/files/ENCFF377HNT/@@download/ENCFF377HNT.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF509YJG bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 1890500544 ENCODE Processing Pipeline 1da2ca1b88df1efb9c60fc8b341ecf2f https://www.encodeproject.org/files/ENCFF509YJG/@@download/ENCFF509YJG.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF359QVU bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 2334828755 ENCODE Processing Pipeline d8ca68aa9950b257f48e109b5eacac17 https://www.encodeproject.org/files/ENCFF359QVU/@@download/ENCFF359QVU.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF935UBG bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 7225540 ENCODE Processing Pipeline 046aefe929362f0413d8b57316e6ef3a https://www.encodeproject.org/files/ENCFF935UBG/@@download/ENCFF935UBG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF878RIH bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 6467288 ENCODE Processing Pipeline 9da4e358d15eef1435c3030cd46166f4 https://www.encodeproject.org/files/ENCFF878RIH/@@download/ENCFF878RIH.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF594ITU bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF082HOG 13254019 ENCODE Processing Pipeline a103c0cc9c0f10cb96b57eb5b8f8cb55 https://www.encodeproject.org/files/ENCFF594ITU/@@download/ENCFF594ITU.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF992JWY bed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF082HOG, ENCFF419RSJ, ENCFF878RIH, ENCFF935UBG 77004 ENCODE Processing Pipeline 6d504382cfd04c96cd2535c4cd14cee5 https://www.encodeproject.org/files/ENCFF992JWY/@@download/ENCFF992JWY.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF082HOG bed narrowPeak peaks and background as input for IDR ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 6978581 ENCODE Processing Pipeline a00ccb223335652f2245c12f9727a092 https://www.encodeproject.org/files/ENCFF082HOG/@@download/ENCFF082HOG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF853WAK bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF935UBG 13170705 ENCODE Processing Pipeline 62cdeaf3f35217a113c786f409179aa5 https://www.encodeproject.org/files/ENCFF853WAK/@@download/ENCFF853WAK.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF906HWN bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF878RIH 11113043 ENCODE Processing Pipeline 10a128b385df4ca14b55ff8f79d2e8c8 https://www.encodeproject.org/files/ENCFF906HWN/@@download/ENCFF906HWN.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF219TAL bed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF082HOG, ENCFF419RSJ, ENCFF878RIH, ENCFF935UBG 46321 ENCODE Processing Pipeline 46e26b67202a4bfe9f94a7a0b3d406a6 https://www.encodeproject.org/files/ENCFF219TAL/@@download/ENCFF219TAL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF016HMS bigBed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF219TAL 151059 ENCODE Processing Pipeline 455647cfcfec194e6da63686f8b4fc38 https://www.encodeproject.org/files/ENCFF016HMS/@@download/ENCFF016HMS.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF470BIA bigBed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF992JWY 202077 ENCODE Processing Pipeline eb42a71c80e7141dac166d9c83f3a7a4 https://www.encodeproject.org/files/ENCFF470BIA/@@download/ENCFF470BIA.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF000VTU bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 486192054 Michael Snyder, Stanford 23b700850bb9e35ff31774e66ef79139 https://www.encodeproject.org/files/ENCFF000VTU/@@download/ENCFF000VTU.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000VTV bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEC 2095827 Michael Snyder, Stanford dbab254fc014d25f300dcecbaa185810 https://www.encodeproject.org/files/ENCFF000VTV/@@download/ENCFF000VTV.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VTW fastq reads ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 934383110 Michael Snyder, Stanford 9cb7d7fb80064d3c547ff6823c03b54d https://www.encodeproject.org/files/ENCFF000VTW/@@download/ENCFF000VTW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VTY fastq reads ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 703565974 Michael Snyder, Stanford 128742840a0a8ca8eee1880151d20611 https://www.encodeproject.org/files/ENCFF000VTY/@@download/ENCFF000VTY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VUA bigWig signal ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 340335262 Michael Snyder, Stanford 53548b3017bb9834d923950ba906e03f https://www.encodeproject.org/files/ENCFF000VUA/@@download/ENCFF000VUA.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000VUB bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 350386541 Michael Snyder, Stanford f2ab9a0858c2c4cf62109249d6157659 https://www.encodeproject.org/files/ENCFF000VUB/@@download/ENCFF000VUB.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001VEC bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 798112 Michael Snyder, Stanford c868a977fd1c2439d38fbe8ef9cc8d79 https://www.encodeproject.org/files/ENCFF001VEC/@@download/ENCFF001VEC.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002COP bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 37449 ENCODE Consortium Analysis Working Group 38600372fb5e2c126dacf2f7e6c1b58b https://www.encodeproject.org/files/ENCFF002COP/@@download/ENCFF002COP.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF733NSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COP 165330 ENCODE Consortium 8ca910eb6e3d78cec84d0a159ee6d7ca https://www.encodeproject.org/files/ENCFF733NSI/@@download/ENCFF733NSI.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065YOX bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF643CGH 604975859 ENCODE Processing Pipeline d8b3391b9c63ae3cc407e1111ed059ae https://www.encodeproject.org/files/ENCFF065YOX/@@download/ENCFF065YOX.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF803YAB bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF643CGH 473315124 ENCODE Processing Pipeline 768189dbe9860c0b431ed3c72654b6c4 https://www.encodeproject.org/files/ENCFF803YAB/@@download/ENCFF803YAB.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF347CFP bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF643CGH 731934761 ENCODE Processing Pipeline 4795294f7045d7de2d98b06a97997e69 https://www.encodeproject.org/files/ENCFF347CFP/@@download/ENCFF347CFP.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF415AGV bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF643CGH 972397090 ENCODE Processing Pipeline 9af74af7b8c608dfb8e7f5f090ead2f4 https://www.encodeproject.org/files/ENCFF415AGV/@@download/ENCFF415AGV.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF934EQK bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF807MUK 729482994 ENCODE Processing Pipeline 29cc0a977f8bb538bf48cda528779ac8 https://www.encodeproject.org/files/ENCFF934EQK/@@download/ENCFF934EQK.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF489JLD bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF807MUK 968655818 ENCODE Processing Pipeline 8e1aabeed955471ee7a0815843a2a40a https://www.encodeproject.org/files/ENCFF489JLD/@@download/ENCFF489JLD.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF853WZI bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF807MUK 470957768 ENCODE Processing Pipeline 891780b5a6d225370e6115d69f954feb https://www.encodeproject.org/files/ENCFF853WZI/@@download/ENCFF853WZI.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF106HCF bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF807MUK 604408291 ENCODE Processing Pipeline 63a9cc756e4f3fad7a0baa11f1683627 https://www.encodeproject.org/files/ENCFF106HCF/@@download/ENCFF106HCF.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF572VFS bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 171893458 ENCODE Processing Pipeline 8578b5cd7e0dc7041ff667c4aae7d71e https://www.encodeproject.org/files/ENCFF572VFS/@@download/ENCFF572VFS.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF483ELN bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 408123562 ENCODE Processing Pipeline 24badcfef1e08af225901f34861bd920 https://www.encodeproject.org/files/ENCFF483ELN/@@download/ENCFF483ELN.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF489ZRF bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 4595594 ENCODE Processing Pipeline bbdc5bffc038217e3744e5405b4d1ceb https://www.encodeproject.org/files/ENCFF489ZRF/@@download/ENCFF489ZRF.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF403TFL bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 173018074 ENCODE Processing Pipeline e934bb13d79149464a97f62f46b7d537 https://www.encodeproject.org/files/ENCFF403TFL/@@download/ENCFF403TFL.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF358LVY bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 159938550 ENCODE Processing Pipeline fd00bfe28a5b8d6e9691c6b7bd13ab4f https://www.encodeproject.org/files/ENCFF358LVY/@@download/ENCFF358LVY.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF931DOD bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF489ZRF 10367717 ENCODE Processing Pipeline 5bbeaed2ecb6cf54012ec2f80c0ab2fb https://www.encodeproject.org/files/ENCFF931DOD/@@download/ENCFF931DOD.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF876SYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF356JLK 413732 ENCODE Processing Pipeline 45083334c6c3647b17ad877c771fe4dc https://www.encodeproject.org/files/ENCFF876SYJ/@@download/ENCFF876SYJ.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF898MUV bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF118LBD, ENCFF489ZRF, ENCFF906FFH 197171 ENCODE Processing Pipeline 590976200dc7a4de06cc75f4f0991b60 https://www.encodeproject.org/files/ENCFF898MUV/@@download/ENCFF898MUV.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF134YTH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF898MUV 450400 ENCODE Processing Pipeline 7a4777755fc571ae1abbd6f50bc3fc92 https://www.encodeproject.org/files/ENCFF134YTH/@@download/ENCFF134YTH.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF684OOJ bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 263664410 ENCODE Processing Pipeline 2ab39eb1853e4bc76656965c32b7abd8 https://www.encodeproject.org/files/ENCFF684OOJ/@@download/ENCFF684OOJ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF558BWJ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF906FFH 13031251 ENCODE Processing Pipeline 23802c5f1fe84befb8d13ce1e986e293 https://www.encodeproject.org/files/ENCFF558BWJ/@@download/ENCFF558BWJ.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF356JLK bed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF118LBD, ENCFF489ZRF, ENCFF906FFH 176619 ENCODE Processing Pipeline a65a5319633a4b4c97b6350bba3930f4 https://www.encodeproject.org/files/ENCFF356JLK/@@download/ENCFF356JLK.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF062BTR bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 76738994 ENCODE Processing Pipeline d5aa8ac43dbd100355eed20a5f64a922 https://www.encodeproject.org/files/ENCFF062BTR/@@download/ENCFF062BTR.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF118LBD bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 4139029 ENCODE Processing Pipeline 9763bff5c78d156a3749165a3f71531d https://www.encodeproject.org/files/ENCFF118LBD/@@download/ENCFF118LBD.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF906FFH bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 5234650 ENCODE Processing Pipeline b3cd9cb22695c440d7e8aefaf7126a0d https://www.encodeproject.org/files/ENCFF906FFH/@@download/ENCFF906FFH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF610MXX bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF118LBD 9584110 ENCODE Processing Pipeline 99ba8420d5e3fae10efd291f63e98aca https://www.encodeproject.org/files/ENCFF610MXX/@@download/ENCFF610MXX.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF555YUZ bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 4600584 ENCODE Processing Pipeline ef1443368246268575ac7da6503bb617 https://www.encodeproject.org/files/ENCFF555YUZ/@@download/ENCFF555YUZ.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF013JVJ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF555YUZ 10341188 ENCODE Processing Pipeline 845b1a8a0a508ab442af25e0e534df94 https://www.encodeproject.org/files/ENCFF013JVJ/@@download/ENCFF013JVJ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF090TBS bed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF555YUZ, ENCFF786JHB, ENCFF988HCB 181164 ENCODE Processing Pipeline 4c5ed97dbb4f840cdefb5e30e30cdbd4 https://www.encodeproject.org/files/ENCFF090TBS/@@download/ENCFF090TBS.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF445ALN bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 172645390 ENCODE Processing Pipeline 95807c3774191317858ce42034716d4f https://www.encodeproject.org/files/ENCFF445ALN/@@download/ENCFF445ALN.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF020UQA bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 156926374 ENCODE Processing Pipeline abd3695f128457766b8be918fda63303 https://www.encodeproject.org/files/ENCFF020UQA/@@download/ENCFF020UQA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF976ZVJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF090TBS 420962 ENCODE Processing Pipeline 0403f9d2a56f080d944c18a2299a8ac1 https://www.encodeproject.org/files/ENCFF976ZVJ/@@download/ENCFF976ZVJ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF208ZPC bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF786JHB 9589908 ENCODE Processing Pipeline 33f1dd9764c78985422cd1342f799b37 https://www.encodeproject.org/files/ENCFF208ZPC/@@download/ENCFF208ZPC.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF342AZN bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 164132689 ENCODE Processing Pipeline fd04bf863734effc775f5df6630484f9 https://www.encodeproject.org/files/ENCFF342AZN/@@download/ENCFF342AZN.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF988HCB bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 5244433 ENCODE Processing Pipeline ce5e285ecb1e3b7639aa5bbd60495724 https://www.encodeproject.org/files/ENCFF988HCB/@@download/ENCFF988HCB.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF006RLZ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF988HCB 13037440 ENCODE Processing Pipeline f526c1d01a12b1b2d691a2550fea4f07 https://www.encodeproject.org/files/ENCFF006RLZ/@@download/ENCFF006RLZ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF470ZMK bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF555YUZ, ENCFF786JHB, ENCFF988HCB 210762 ENCODE Processing Pipeline 8956d48a4fcec991b1594a282ffba056 https://www.encodeproject.org/files/ENCFF470ZMK/@@download/ENCFF470ZMK.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF981JEY bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 264840654 ENCODE Processing Pipeline 5f13a3f6d76e35337b56c344b931326e https://www.encodeproject.org/files/ENCFF981JEY/@@download/ENCFF981JEY.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF480VBH bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 77057959 ENCODE Processing Pipeline 69c7b5ecb5f39974a62f11bf119e0f9c https://www.encodeproject.org/files/ENCFF480VBH/@@download/ENCFF480VBH.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF118ZGB bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 413630164 ENCODE Processing Pipeline 9a9a5a60f0c787d241ae101d9cb2b881 https://www.encodeproject.org/files/ENCFF118ZGB/@@download/ENCFF118ZGB.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF786JHB bed narrowPeak peaks and background as input for IDR ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 4140727 ENCODE Processing Pipeline e1fa7f7054651d1795884b861f596b31 https://www.encodeproject.org/files/ENCFF786JHB/@@download/ENCFF786JHB.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF204CQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF470ZMK 472668 ENCODE Processing Pipeline 91d541c0cd8cdb529c23a4ecbeb37203 https://www.encodeproject.org/files/ENCFF204CQV/@@download/ENCFF204CQV.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF664WOZ bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF807MUK 1340236607 ENCODE Processing Pipeline 38ef0bb23257ce97baa70f527caad3c3 https://www.encodeproject.org/files/ENCFF664WOZ/@@download/ENCFF664WOZ.bam hg19 released low read length ENCFF102UZW bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF807MUK 1373062457 ENCODE Processing Pipeline 8900af8dab51824166235783101362c5 https://www.encodeproject.org/files/ENCFF102UZW/@@download/ENCFF102UZW.bam hg19 released low read length ENCFF894EBL bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4754374 ENCODE Processing Pipeline f41e8db986ad83789c943f560b85abbf https://www.encodeproject.org/files/ENCFF894EBL/@@download/ENCFF894EBL.bed.gz hg19 released low read length ENCFF567MQM bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 4952334 ENCODE Processing Pipeline 14bcc8dd6f42a19f81af4b33a4bb1706 https://www.encodeproject.org/files/ENCFF567MQM/@@download/ENCFF567MQM.bed.gz hg19 released low read length ENCFF251KCB bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 6273441 ENCODE Processing Pipeline 9c95a12bb6470624d88f7e5dbbe1edfa https://www.encodeproject.org/files/ENCFF251KCB/@@download/ENCFF251KCB.bed.gz hg19 released low read length ENCFF196ZMU bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF567MQM 11091337 ENCODE Processing Pipeline af5b34df6b15e17cf6afc4cd368e28d1 https://www.encodeproject.org/files/ENCFF196ZMU/@@download/ENCFF196ZMU.bigBed hg19 released low read length ENCFF025MGM bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF894EBL 11182595 ENCODE Processing Pipeline c5efaa83b5cbb04123f7359fd0757d13 https://www.encodeproject.org/files/ENCFF025MGM/@@download/ENCFF025MGM.bigBed hg19 released low read length ENCFF361YUB bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF251KCB 13573802 ENCODE Processing Pipeline effb25defc6b8a07a5ecbf48ef4d1be2 https://www.encodeproject.org/files/ENCFF361YUB/@@download/ENCFF361YUB.bigBed hg19 released low read length ENCFF226KLT bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF251KCB, ENCFF567MQM, ENCFF894EBL 148589 ENCODE Processing Pipeline 58df8cb1f9bd480a3ec373e6a4b131f4 https://www.encodeproject.org/files/ENCFF226KLT/@@download/ENCFF226KLT.bed.gz hg19 released low read length ENCFF019LOX bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226KLT 352935 ENCODE Processing Pipeline e0ee3e3fd3d5f56224bbe467dfa19f28 https://www.encodeproject.org/files/ENCFF019LOX/@@download/ENCFF019LOX.bigBed hg19 released low read length ENCFF208TRU bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF251KCB, ENCFF567MQM, ENCFF894EBL 167235 ENCODE Processing Pipeline b6b7a380d838641fb514a9c1fd6b89e3 https://www.encodeproject.org/files/ENCFF208TRU/@@download/ENCFF208TRU.bed.gz hg19 released low read length ENCFF736THE bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF208TRU 380161 ENCODE Processing Pipeline 47e31125270cc9342835f8e0a4aac420 https://www.encodeproject.org/files/ENCFF736THE/@@download/ENCFF736THE.bigBed hg19 released low read length ENCFF002EAN fastq reads ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1112977358 Michael Snyder, Stanford 53cd755e4f6b00ccaef31cdbb73d4d19 SRA:SRR5111693 https://www.encodeproject.org/files/ENCFF002EAN/@@download/ENCFF002EAN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length ENCFF002EAO fastq reads ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 1096108808 Michael Snyder, Stanford e22c8ef22d0033a737bb97b0b833e034 SRA:SRR5111694 https://www.encodeproject.org/files/ENCFF002EAO/@@download/ENCFF002EAO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length ENCFF319QTJ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF807MUK 922732709 ENCODE Processing Pipeline 14690f3d5d16f6523798787c782a02b2 https://www.encodeproject.org/files/ENCFF319QTJ/@@download/ENCFF319QTJ.bam hg19 released low read length ENCFF370WJQ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF807MUK 953526907 ENCODE Processing Pipeline 019e2b6dc8da51b97b6a0ce7a6988051 https://www.encodeproject.org/files/ENCFF370WJQ/@@download/ENCFF370WJQ.bam hg19 released low read length ENCFF980WUK bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 518060803 ENCODE Processing Pipeline f25686fd59cdb67fb614b57a3062c2de https://www.encodeproject.org/files/ENCFF980WUK/@@download/ENCFF980WUK.bigWig hg19 released low read length ENCFF637TIO bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 501751685 ENCODE Processing Pipeline 1b0214d27c5ce4d9e03cefef7a61bdbe https://www.encodeproject.org/files/ENCFF637TIO/@@download/ENCFF637TIO.bigWig hg19 released low read length ENCFF202BJI bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 1023621787 ENCODE Processing Pipeline ada73c3b5eb929a80133d5845424f623 https://www.encodeproject.org/files/ENCFF202BJI/@@download/ENCFF202BJI.bigWig hg19 released low read length ENCFF048FWM bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 463840323 ENCODE Processing Pipeline 8c99111f59a3e4e70993faab0e175ff1 https://www.encodeproject.org/files/ENCFF048FWM/@@download/ENCFF048FWM.bigWig hg19 released low read length ENCFF358RQJ bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 482679281 ENCODE Processing Pipeline d210bce386ba6ef944274ec0884e2644 https://www.encodeproject.org/files/ENCFF358RQJ/@@download/ENCFF358RQJ.bigWig hg19 released low read length ENCFF807ESQ bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4977549 ENCODE Processing Pipeline ae6242bd8eff5d4f51e1ba2d55c776e3 https://www.encodeproject.org/files/ENCFF807ESQ/@@download/ENCFF807ESQ.bed.gz hg19 archived low read length ENCFF686ASL bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 1055954188 ENCODE Processing Pipeline aba3026852dee55f6b921479d4d7717a https://www.encodeproject.org/files/ENCFF686ASL/@@download/ENCFF686ASL.bigWig hg19 released low read length ENCFF459WLH bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF620ZVU 13581665 ENCODE Processing Pipeline 1cac6b6537792ed504135cffc2b0d5e4 https://www.encodeproject.org/files/ENCFF459WLH/@@download/ENCFF459WLH.bigBed hg19 archived low read length ENCFF078PIZ bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF750GSF 11168198 ENCODE Processing Pipeline 589ba6ca3b0c9770e3e21bdfcd0e2247 https://www.encodeproject.org/files/ENCFF078PIZ/@@download/ENCFF078PIZ.bigBed hg19 archived low read length ENCFF750GSF bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 5126280 ENCODE Processing Pipeline 30f8100ecdac18918e2280d601391371 https://www.encodeproject.org/files/ENCFF750GSF/@@download/ENCFF750GSF.bed.gz hg19 archived low read length ENCFF620ZVU bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 6444079 ENCODE Processing Pipeline 34761b365c335215cb13889fd8953ae0 https://www.encodeproject.org/files/ENCFF620ZVU/@@download/ENCFF620ZVU.bed.gz hg19 archived low read length ENCFF090IVX bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF807ESQ 11308262 ENCODE Processing Pipeline a67a8ae7fdd5c0458cf0bb7620229f92 https://www.encodeproject.org/files/ENCFF090IVX/@@download/ENCFF090IVX.bigBed hg19 archived low read length ENCFF209LCU bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF643CGH 1378586785 ENCODE Processing Pipeline 0314cf42cd98b5d70903b80300abb059 https://www.encodeproject.org/files/ENCFF209LCU/@@download/ENCFF209LCU.bam GRCh38 released low read length ENCFF601BPA bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF643CGH 1345362083 ENCODE Processing Pipeline 230eda7dced2eae0d3961ec9eb9625e7 https://www.encodeproject.org/files/ENCFF601BPA/@@download/ENCFF601BPA.bam GRCh38 released low read length ENCFF019MMH bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF643CGH 954224706 ENCODE Processing Pipeline 16b381910d9219bcf7e87fb38fbeb58d https://www.encodeproject.org/files/ENCFF019MMH/@@download/ENCFF019MMH.bam GRCh38 released low read length ENCFF057WQP bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF643CGH 922985472 ENCODE Processing Pipeline 04ba1f1cedde58ff0f136a73a67f6659 https://www.encodeproject.org/files/ENCFF057WQP/@@download/ENCFF057WQP.bam GRCh38 released low read length ENCFF791KTN bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 518479670 ENCODE Processing Pipeline 53847216e7ca330079e758715abe46d0 https://www.encodeproject.org/files/ENCFF791KTN/@@download/ENCFF791KTN.bigWig GRCh38 released low read length ENCFF664TDT bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 661542341 ENCODE Processing Pipeline 1d01880385bad75ac8c1f94034dcaf66 https://www.encodeproject.org/files/ENCFF664TDT/@@download/ENCFF664TDT.bigWig GRCh38 released low read length ENCFF017NDW bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 1053712961 ENCODE Processing Pipeline dccba5b3648934cb152bfc3259a2ae66 https://www.encodeproject.org/files/ENCFF017NDW/@@download/ENCFF017NDW.bigWig GRCh38 released low read length ENCFF261WEE bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 462718383 ENCODE Processing Pipeline cd96c4451be6cb02fef032a7211b69af https://www.encodeproject.org/files/ENCFF261WEE/@@download/ENCFF261WEE.bigWig GRCh38 released low read length ENCFF662RDI bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 485630836 ENCODE Processing Pipeline 6c73792ec77add0a5cce531346497c60 https://www.encodeproject.org/files/ENCFF662RDI/@@download/ENCFF662RDI.bigWig GRCh38 released low read length ENCFF654LQC bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 1055989369 ENCODE Processing Pipeline 702fe19aa422dc4783aa5966d2fc766e https://www.encodeproject.org/files/ENCFF654LQC/@@download/ENCFF654LQC.bigWig GRCh38 released low read length ENCFF700ZFS bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 4951270 ENCODE Processing Pipeline a788b7fb58995f693a4e94402ac0cebf https://www.encodeproject.org/files/ENCFF700ZFS/@@download/ENCFF700ZFS.bed.gz GRCh38 released low read length ENCFF243TTR bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF700ZFS 11095766 ENCODE Processing Pipeline 7a73e8465bf934d28b8a0cd33a287762 https://www.encodeproject.org/files/ENCFF243TTR/@@download/ENCFF243TTR.bigBed GRCh38 released low read length ENCFF887RSH bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF778JPG 11194591 ENCODE Processing Pipeline c40e36195c851d4f572203bd09af986f https://www.encodeproject.org/files/ENCFF887RSH/@@download/ENCFF887RSH.bigBed GRCh38 released low read length ENCFF920FXJ bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF618OGV 13576912 ENCODE Processing Pipeline 1c0bb9cd94a4a62d768df87ba8bf1878 https://www.encodeproject.org/files/ENCFF920FXJ/@@download/ENCFF920FXJ.bigBed GRCh38 released low read length ENCFF778JPG bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 4762920 ENCODE Processing Pipeline e3e6e181cf9e670981941a45d179cdd7 https://www.encodeproject.org/files/ENCFF778JPG/@@download/ENCFF778JPG.bed.gz GRCh38 released low read length ENCFF618OGV bed narrowPeak peaks and background as input for IDR ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 6270426 ENCODE Processing Pipeline 7432f2d2041b1e8dbce43ab251d1302a https://www.encodeproject.org/files/ENCFF618OGV/@@download/ENCFF618OGV.bed.gz GRCh38 released low read length ENCFF309XXF bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF618OGV, ENCFF700ZFS, ENCFF778JPG 147982 ENCODE Processing Pipeline 29421a9a553912448b5e4903f894cf14 https://www.encodeproject.org/files/ENCFF309XXF/@@download/ENCFF309XXF.bed.gz GRCh38 released low read length ENCFF158HWE bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF309XXF 352992 ENCODE Processing Pipeline 67d1a9fdb9f225ae548f41d661022fa2 https://www.encodeproject.org/files/ENCFF158HWE/@@download/ENCFF158HWE.bigBed GRCh38 released low read length ENCFF722QBB bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF618OGV, ENCFF700ZFS, ENCFF778JPG 169749 ENCODE Processing Pipeline 7495549277113024c9267a026394e52d https://www.encodeproject.org/files/ENCFF722QBB/@@download/ENCFF722QBB.bed.gz GRCh38 released low read length ENCFF587KER bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF722QBB 384110 ENCODE Processing Pipeline d7d519b950bc329a3d61520c5a81a396 https://www.encodeproject.org/files/ENCFF587KER/@@download/ENCFF587KER.bigBed GRCh38 released low read length ENCFF937AQB bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF062INM 257371 ENCODE Processing Pipeline 364fd5e241d0ebac697804c59b13bc0f https://www.encodeproject.org/files/ENCFF937AQB/@@download/ENCFF937AQB.bigBed hg19 archived low read length ENCFF062INM bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620ZVU, ENCFF750GSF, ENCFF807ESQ 128437 ENCODE Processing Pipeline 1606a1f74db0a10503d65a03ceaaa2c9 https://www.encodeproject.org/files/ENCFF062INM/@@download/ENCFF062INM.bed.gz hg19 archived low read length ENCFF895YBG bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620ZVU, ENCFF750GSF, ENCFF807ESQ 144516 ENCODE Processing Pipeline c72d579bd05ba4d5ba639a7d22b58cb4 https://www.encodeproject.org/files/ENCFF895YBG/@@download/ENCFF895YBG.bed.gz hg19 archived low read length ENCFF354VJB bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF895YBG 276574 ENCODE Processing Pipeline 6caf72e7807bf023462d08a66bc15c21 https://www.encodeproject.org/files/ENCFF354VJB/@@download/ENCFF354VJB.bigBed hg19 archived low read length ENCFF000OEN bigBed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYZ 911870 Richard Myers, HAIB abbafb302bb98f64d5faa5c9e3757a11 https://www.encodeproject.org/files/ENCFF000OEN/@@download/ENCFF000OEN.bigBed hg19 released low read length missing raw data in replicate ENCFF000OEO bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEV 869557624 Richard Myers, HAIB c1f6262ecaafe47381bc9b4083ac89ab https://www.encodeproject.org/files/ENCFF000OEO/@@download/ENCFF000OEO.bam hg19 released low read length missing raw data in replicate ENCFF000OES bigWig raw signal ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 23458524 Richard Myers, HAIB 9c83a09aad12e07ca3a5db15bf3dfbed https://www.encodeproject.org/files/ENCFF000OES/@@download/ENCFF000OES.bigWig hg19 released low read length missing raw data in replicate, missing derived_from ENCFF000OEV fastq reads ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 875849247 Richard Myers, HAIB 7f54f981d9432ee1443c19b21118f5ba https://www.encodeproject.org/files/ENCFF000OEV/@@download/ENCFF000OEV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length missing raw data in replicate ENCFF001TYZ bed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 472261 Richard Myers, HAIB 53c3b019a9b4e52685cac6906cd6abcb https://www.encodeproject.org/files/ENCFF001TYZ/@@download/ENCFF001TYZ.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from ENCFF000OEL bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 567992634 Richard Myers, HAIB 9b64ec2e8eba8adb613d9502da19908b https://www.encodeproject.org/files/ENCFF000OEL/@@download/ENCFF000OEL.bam hg19 released low read length missing raw data in replicate, missing derived_from ENCFF000OEM bigBed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYY 825942 Richard Myers, HAIB e9cfd6d9e8bdecd29d42c3b73563a61c https://www.encodeproject.org/files/ENCFF000OEM/@@download/ENCFF000OEM.bigBed hg19 released low read length missing raw data in replicate ENCFF000OER bigWig raw signal ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 33945573 Richard Myers, HAIB fff31991d0f126e44d1893f492da3454 https://www.encodeproject.org/files/ENCFF000OER/@@download/ENCFF000OER.bigWig hg19 released low read length missing raw data in replicate, missing derived_from ENCFF001TYY bed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 411807 Richard Myers, HAIB f2b3d462b1153966fd7059967dfb9f59 https://www.encodeproject.org/files/ENCFF001TYY/@@download/ENCFF001TYY.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from ENCFF002CHV bed narrowPeak optimal idr thresholded peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 357355 ENCODE Consortium Analysis Working Group f3352a8a478ebcbe54fda2f2becbd4eb https://www.encodeproject.org/files/ENCFF002CHV/@@download/ENCFF002CHV.bed.gz hg19 released low read length missing raw data in replicate, missing derived_from ENCFF329HXD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHV 807661 ENCODE Consortium 9c1d166820c83b349667e376b519559c https://www.encodeproject.org/files/ENCFF329HXD/@@download/ENCFF329HXD.bigBed hg19 released low read length missing raw data in replicate ENCFF000OCD bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000OCO 1721673923 Richard Myers, HAIB cf5e1a3e34070deb95606c8c9819bccf https://www.encodeproject.org/files/ENCFF000OCD/@@download/ENCFF000OCD.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCF bigBed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TYS 2012942 Richard Myers, HAIB b96e7ba9949eba26278f248e5d0b05bc https://www.encodeproject.org/files/ENCFF000OCF/@@download/ENCFF000OCF.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCG bigBed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TYU 1803337 Richard Myers, HAIB 88d5913a8f20627e3679b0ab39423a1a https://www.encodeproject.org/files/ENCFF000OCG/@@download/ENCFF000OCG.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCI bigWig raw signal ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 93108974 Richard Myers, HAIB 8038385b98273771ca254c5b63be221a https://www.encodeproject.org/files/ENCFF000OCI/@@download/ENCFF000OCI.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OCJ bigWig raw signal ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 62928729 Richard Myers, HAIB e32681ab843c80c1d1226ed1b4476ec4 https://www.encodeproject.org/files/ENCFF000OCJ/@@download/ENCFF000OCJ.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OCK bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000OCP 1956068426 Richard Myers, HAIB 7500f4418ad99edb9818b3843782aff4 https://www.encodeproject.org/files/ENCFF000OCK/@@download/ENCFF000OCK.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCO fastq reads ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1775160382 Richard Myers, HAIB e38468b345305b740ce2957d4915b6bd https://www.encodeproject.org/files/ENCFF000OCO/@@download/ENCFF000OCO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCP fastq reads ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1930366302 Richard Myers, HAIB 9484a8e46d2c7abab24aa55ad1c04bf1 https://www.encodeproject.org/files/ENCFF000OCP/@@download/ENCFF000OCP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TYS bed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 1351121 Richard Myers, HAIB 3f97af6157a31ed4e33c6ee4335241d1 https://www.encodeproject.org/files/ENCFF001TYS/@@download/ENCFF001TYS.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TYU bed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 1153047 Richard Myers, HAIB cb8749a7564b1149d051e9ee3e15fed9 https://www.encodeproject.org/files/ENCFF001TYU/@@download/ENCFF001TYU.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHS bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1352322 ENCODE Consortium Analysis Working Group 302146bfd3784632e94fe3ef1dde166f https://www.encodeproject.org/files/ENCFF002CHS/@@download/ENCFF002CHS.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF692ISE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHS 3053993 ENCODE Consortium 7df587d6a487b12c59653d34e375bb0e https://www.encodeproject.org/files/ENCFF692ISE/@@download/ENCFF692ISE.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF038MRS bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF643CGH 1871583302 ENCODE Processing Pipeline 3c8b302e303dd579ead4dbf304f7d8d7 https://www.encodeproject.org/files/ENCFF038MRS/@@download/ENCFF038MRS.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF884LEJ bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF643CGH 1310865014 ENCODE Processing Pipeline 2c7328f9c0522b10017e23b87d6c443c https://www.encodeproject.org/files/ENCFF884LEJ/@@download/ENCFF884LEJ.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF405AFR bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF643CGH 2086585384 ENCODE Processing Pipeline 594c8f737520e87c45837644633fc0f9 https://www.encodeproject.org/files/ENCFF405AFR/@@download/ENCFF405AFR.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF579PRC bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF643CGH 1228544425 ENCODE Processing Pipeline 4fde830e948cda520da031390b6c7586 https://www.encodeproject.org/files/ENCFF579PRC/@@download/ENCFF579PRC.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF274RRW bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF807MUK 1871001660 ENCODE Processing Pipeline 10504dd4087f4cc70e3ebaebfb3bb13c https://www.encodeproject.org/files/ENCFF274RRW/@@download/ENCFF274RRW.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF187NWS bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF807MUK 1223093856 ENCODE Processing Pipeline 2b08f5391556de23d2685890c27c597c https://www.encodeproject.org/files/ENCFF187NWS/@@download/ENCFF187NWS.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF102ABY bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF807MUK 2085249488 ENCODE Processing Pipeline f94f2ea8064ee009416f26e16d82033a https://www.encodeproject.org/files/ENCFF102ABY/@@download/ENCFF102ABY.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF987SJL bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF807MUK 1304072691 ENCODE Processing Pipeline 3d84de396b7843d51a9ee68831ba31fb https://www.encodeproject.org/files/ENCFF987SJL/@@download/ENCFF987SJL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF012VSZ bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 561425339 ENCODE Processing Pipeline c321f37255b51135b5cde9f09d312885 https://www.encodeproject.org/files/ENCFF012VSZ/@@download/ENCFF012VSZ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF162QGZ bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 6272224 ENCODE Processing Pipeline 274e80d557c26e101e561d1f7b6d0b54 https://www.encodeproject.org/files/ENCFF162QGZ/@@download/ENCFF162QGZ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF335BBU bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 914955227 ENCODE Processing Pipeline 8f187dc3fa90a2f2b495c34eeacbec27 https://www.encodeproject.org/files/ENCFF335BBU/@@download/ENCFF335BBU.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF995DLI bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 803540294 ENCODE Processing Pipeline 12f224b4da14ee03364a0184657f137e https://www.encodeproject.org/files/ENCFF995DLI/@@download/ENCFF995DLI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF369GXX bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF369MFU 13409750 ENCODE Processing Pipeline a7f40fd7b11fb737cd4f77b34ae2ad27 https://www.encodeproject.org/files/ENCFF369GXX/@@download/ENCFF369GXX.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF850UWN bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 556746961 ENCODE Processing Pipeline 358067426c048c83cb397c526b2636b0 https://www.encodeproject.org/files/ENCFF850UWN/@@download/ENCFF850UWN.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF369MFU bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 6793826 ENCODE Processing Pipeline 655c667f55d86da02c20a1d2e8834dbe https://www.encodeproject.org/files/ENCFF369MFU/@@download/ENCFF369MFU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF309SPQ bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 6617463 ENCODE Processing Pipeline d40c8272c3c83502c42cceac5214dc4e https://www.encodeproject.org/files/ENCFF309SPQ/@@download/ENCFF309SPQ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF226HQN bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF309SPQ 12876528 ENCODE Processing Pipeline a12bbacdc307b529f373d64761ed1619 https://www.encodeproject.org/files/ENCFF226HQN/@@download/ENCFF226HQN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF677QUK bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF162QGZ, ENCFF309SPQ, ENCFF369MFU, ENCFF419RSJ 1217020 ENCODE Processing Pipeline 7f24bbb13e0a76433ca8fb20b323147e https://www.encodeproject.org/files/ENCFF677QUK/@@download/ENCFF677QUK.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248LUS bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF162QGZ 12713207 ENCODE Processing Pipeline 01a42451547f53589f3d8fc1605c6413 https://www.encodeproject.org/files/ENCFF248LUS/@@download/ENCFF248LUS.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF657ILV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017CJU 2002352 ENCODE Processing Pipeline d5aa41f64fa195f1746cfaaa1dd426a2 https://www.encodeproject.org/files/ENCFF657ILV/@@download/ENCFF657ILV.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF224GNF bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 749227463 ENCODE Processing Pipeline d79e412ca8a9908d3d7ab3c7788f9331 https://www.encodeproject.org/files/ENCFF224GNF/@@download/ENCFF224GNF.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248JTC bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 728533073 ENCODE Processing Pipeline 7e1d57c37a9871019d1046345a96639d https://www.encodeproject.org/files/ENCFF248JTC/@@download/ENCFF248JTC.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF017CJU bed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF162QGZ, ENCFF309SPQ, ENCFF369MFU, ENCFF419RSJ 1070026 ENCODE Processing Pipeline 89f429f7bb751ad117407b25bc2415c4 https://www.encodeproject.org/files/ENCFF017CJU/@@download/ENCFF017CJU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF102DRN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF677QUK 2208462 ENCODE Processing Pipeline 9ace97b5ec472de575574ec36554867c https://www.encodeproject.org/files/ENCFF102DRN/@@download/ENCFF102DRN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF255ZHC bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 618591245 ENCODE Processing Pipeline 8b891fdae0316aff7f9af0c5cb216067 https://www.encodeproject.org/files/ENCFF255ZHC/@@download/ENCFF255ZHC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF302PDU bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 562878581 ENCODE Processing Pipeline 07fbdeb043990716b843c0f05e0746c5 https://www.encodeproject.org/files/ENCFF302PDU/@@download/ENCFF302PDU.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF106VZH bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 676423514 ENCODE Processing Pipeline 4eb85791264180f597c6837e8355e3e1 https://www.encodeproject.org/files/ENCFF106VZH/@@download/ENCFF106VZH.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF760PWN bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 801586221 ENCODE Processing Pipeline 725b752e4c5f1988f8d541a5036027cb https://www.encodeproject.org/files/ENCFF760PWN/@@download/ENCFF760PWN.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF153QVS bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 560449408 ENCODE Processing Pipeline 4088fda573d7e88aae867606f652a569 https://www.encodeproject.org/files/ENCFF153QVS/@@download/ENCFF153QVS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF308ISM bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 6708986 ENCODE Processing Pipeline a0b560d9262b1a6d9aa464957703bd79 https://www.encodeproject.org/files/ENCFF308ISM/@@download/ENCFF308ISM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248QFF bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308ISM, ENCFF670DLM, ENCFF689WPU 1213545 ENCODE Processing Pipeline f32fa41421aa72103e62f7a02ec79e44 https://www.encodeproject.org/files/ENCFF248QFF/@@download/ENCFF248QFF.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF238SAO bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 917947329 ENCODE Processing Pipeline 971075bf1ee14a8ddc3b7fb90465ae2f https://www.encodeproject.org/files/ENCFF238SAO/@@download/ENCFF238SAO.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF055DJP bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF308ISM 13008645 ENCODE Processing Pipeline 5c13603eea68a33d25c51a1ecba3dbb9 https://www.encodeproject.org/files/ENCFF055DJP/@@download/ENCFF055DJP.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF689WPU bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 6167189 ENCODE Processing Pipeline 73e8fd857d18c96a2d5ac75e326a95fb https://www.encodeproject.org/files/ENCFF689WPU/@@download/ENCFF689WPU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF381XGD bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF670DLM 12878507 ENCODE Processing Pipeline c2aece7c8094d4bcd3f71019680b617a https://www.encodeproject.org/files/ENCFF381XGD/@@download/ENCFF381XGD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF157CYE bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF689WPU 12652895 ENCODE Processing Pipeline bbcf8a31fa0c879ac68927c89f7dedf3 https://www.encodeproject.org/files/ENCFF157CYE/@@download/ENCFF157CYE.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF670DLM bed narrowPeak peaks and background as input for IDR ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 6389708 ENCODE Processing Pipeline 72b8ad68ef98cdec0a11f280ae041ddc https://www.encodeproject.org/files/ENCFF670DLM/@@download/ENCFF670DLM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF458CFK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF147DQK 2000804 ENCODE Processing Pipeline bed22a4778da86de969e60fce3457a91 https://www.encodeproject.org/files/ENCFF458CFK/@@download/ENCFF458CFK.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF782WBX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF248QFF 2208232 ENCODE Processing Pipeline 208ab5c5a7a5720f71bb01ddd0171a63 https://www.encodeproject.org/files/ENCFF782WBX/@@download/ENCFF782WBX.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF147DQK bed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308ISM, ENCFF670DLM, ENCFF689WPU 1067367 ENCODE Processing Pipeline bed2c322ce905180a0ff3dc14e658782 https://www.encodeproject.org/files/ENCFF147DQK/@@download/ENCFF147DQK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NZI bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZS 690577483 Richard Myers, HAIB badfe049f18e1b3446543f7f43f50929 https://www.encodeproject.org/files/ENCFF000NZI/@@download/ENCFF000NZI.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000NZJ bigBed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYA 581977 Richard Myers, HAIB d61a088aef4fd259f6960148fb650b18 https://www.encodeproject.org/files/ENCFF000NZJ/@@download/ENCFF000NZJ.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000NZK bigBed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYB 1014675 Richard Myers, HAIB bad613532a0d931eaa6e7dc6e150384a https://www.encodeproject.org/files/ENCFF000NZK/@@download/ENCFF000NZK.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000NZL bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZX 1228881878 Richard Myers, HAIB 5802de19006c59d71540a184a06b52ac https://www.encodeproject.org/files/ENCFF000NZL/@@download/ENCFF000NZL.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000NZM bigWig raw signal ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 14355265 Richard Myers, HAIB 842ffe2b45f53654a4cf4ef3d049cd67 https://www.encodeproject.org/files/ENCFF000NZM/@@download/ENCFF000NZM.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NZN bigWig raw signal ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 37938613 Richard Myers, HAIB 70513f456e0c4e25ab4badc30c7443ec https://www.encodeproject.org/files/ENCFF000NZN/@@download/ENCFF000NZN.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NZS fastq reads ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1116127923 Richard Myers, HAIB f06824992b7e971a0c64711220a190cb https://www.encodeproject.org/files/ENCFF000NZS/@@download/ENCFF000NZS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000NZX fastq reads ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1438184764 Richard Myers, HAIB b88b073fe53acccf8e67693c9c8beb65 https://www.encodeproject.org/files/ENCFF000NZX/@@download/ENCFF000NZX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001TYA bed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 313249 Richard Myers, HAIB 175e3d4fe8bd5c393065a13fad5adb61 https://www.encodeproject.org/files/ENCFF001TYA/@@download/ENCFF001TYA.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TYB bed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 571633 Richard Myers, HAIB 68e59b97368344535065ee6e9469c90b https://www.encodeproject.org/files/ENCFF001TYB/@@download/ENCFF001TYB.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CHK bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 383139 ENCODE Consortium Analysis Working Group bc78187f95b7ecfb2d41029a2b41319d https://www.encodeproject.org/files/ENCFF002CHK/@@download/ENCFF002CHK.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF957ZYT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHK 854332 ENCODE Consortium 6df8f004671a30394a872fb7d82b2c7f https://www.encodeproject.org/files/ENCFF957ZYT/@@download/ENCFF957ZYT.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF857OQO bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF643CGH 1337442434 ENCODE Processing Pipeline bedeb0426d2329b280693d2cf06ce49e https://www.encodeproject.org/files/ENCFF857OQO/@@download/ENCFF857OQO.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF614SHU bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF643CGH 477999391 ENCODE Processing Pipeline 8abd6f677c6103e06df480f379e31b18 https://www.encodeproject.org/files/ENCFF614SHU/@@download/ENCFF614SHU.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF406HIQ bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF643CGH 1819559868 ENCODE Processing Pipeline b0a1803e73142757ffc6413e3bc44d42 https://www.encodeproject.org/files/ENCFF406HIQ/@@download/ENCFF406HIQ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF475VQL bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF643CGH 935790985 ENCODE Processing Pipeline df19eeb9088288e455d4947a29b5289e https://www.encodeproject.org/files/ENCFF475VQL/@@download/ENCFF475VQL.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF051KDT bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF807MUK 1333855214 ENCODE Processing Pipeline ed510d11bbe769f5ccb3d5540500f806 https://www.encodeproject.org/files/ENCFF051KDT/@@download/ENCFF051KDT.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF228QWW bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF807MUK 477534235 ENCODE Processing Pipeline b14b448d35f78fa3280b5eafd27cb0ee https://www.encodeproject.org/files/ENCFF228QWW/@@download/ENCFF228QWW.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF216EUF bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF807MUK 929244003 ENCODE Processing Pipeline 4ccb9c5ab55377e50c6467c661aef965 https://www.encodeproject.org/files/ENCFF216EUF/@@download/ENCFF216EUF.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF498EOO bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF807MUK 1814545700 ENCODE Processing Pipeline da91f57475239afdb48ae76f1bea91b6 https://www.encodeproject.org/files/ENCFF498EOO/@@download/ENCFF498EOO.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF446FQC bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 252135596 ENCODE Processing Pipeline 5112bfeb6c7c96f87dde6744c897691f https://www.encodeproject.org/files/ENCFF446FQC/@@download/ENCFF446FQC.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF837TKO bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 510543387 ENCODE Processing Pipeline fa427e71891497d7e7cf94d71a6e550a https://www.encodeproject.org/files/ENCFF837TKO/@@download/ENCFF837TKO.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF358KNT bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 487138939 ENCODE Processing Pipeline 78eabfc72761db984ac7f5be38382a3e https://www.encodeproject.org/files/ENCFF358KNT/@@download/ENCFF358KNT.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF889FZO bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 549442335 ENCODE Processing Pipeline e3bb1b9dfebaeabec2de738ae907af99 https://www.encodeproject.org/files/ENCFF889FZO/@@download/ENCFF889FZO.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF926EPQ bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 731823797 ENCODE Processing Pipeline cf054f5d9306600e807602949784ef1a https://www.encodeproject.org/files/ENCFF926EPQ/@@download/ENCFF926EPQ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF631BGT bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF322OFP 8943892 ENCODE Processing Pipeline 8cc5d98d66f11d544e2361f62d8a30e0 https://www.encodeproject.org/files/ENCFF631BGT/@@download/ENCFF631BGT.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF322OFP bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 3843589 ENCODE Processing Pipeline faf3ed090f1efdb117bcab54a33dde81 https://www.encodeproject.org/files/ENCFF322OFP/@@download/ENCFF322OFP.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF745IWV bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 5623493 ENCODE Processing Pipeline 69aeee6d2cbd908e3698c93460beac56 https://www.encodeproject.org/files/ENCFF745IWV/@@download/ENCFF745IWV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF851GCH bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 635730648 ENCODE Processing Pipeline e2398aa2af3123ec6b12b721f34c7dd3 https://www.encodeproject.org/files/ENCFF851GCH/@@download/ENCFF851GCH.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF041UZM bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 5797560 ENCODE Processing Pipeline cacf57dff2b18ae6e5515aa194a035df https://www.encodeproject.org/files/ENCFF041UZM/@@download/ENCFF041UZM.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF946SAG bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM, ENCFF322OFP, ENCFF419RSJ, ENCFF745IWV 384608 ENCODE Processing Pipeline 2e7c73324c812bc0506c159899d6f263 https://www.encodeproject.org/files/ENCFF946SAG/@@download/ENCFF946SAG.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF538DWL bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM 13236941 ENCODE Processing Pipeline 433274a71935eb3c4855adc12cf24cfa https://www.encodeproject.org/files/ENCFF538DWL/@@download/ENCFF538DWL.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF659FRU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF946SAG 682173 ENCODE Processing Pipeline 7645fd4b1c0d3da4740a3f69e6ab8aae https://www.encodeproject.org/files/ENCFF659FRU/@@download/ENCFF659FRU.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF259SNF bed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM, ENCFF322OFP, ENCFF419RSJ, ENCFF745IWV 324899 ENCODE Processing Pipeline 18a5d138409bf6b5643a5a9b788d4b45 https://www.encodeproject.org/files/ENCFF259SNF/@@download/ENCFF259SNF.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF990NTO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SNF 604538 ENCODE Processing Pipeline d10e6f9598b276ad6208b3c50dba354b https://www.encodeproject.org/files/ENCFF990NTO/@@download/ENCFF990NTO.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF791MAK bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF745IWV 13283988 ENCODE Processing Pipeline 07e4915a5970af439672ca02eb256174 https://www.encodeproject.org/files/ENCFF791MAK/@@download/ENCFF791MAK.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF043JKN bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 508708369 ENCODE Processing Pipeline 92da36fe17b49e61c70de17754bae769 https://www.encodeproject.org/files/ENCFF043JKN/@@download/ENCFF043JKN.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF422CWM bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 493135742 ENCODE Processing Pipeline 4c3538cf302dfc5a79d564cfdd9ca640 https://www.encodeproject.org/files/ENCFF422CWM/@@download/ENCFF422CWM.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF094ZSJ bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 555917325 ENCODE Processing Pipeline c020f49f51fadf7c59ae51f7bfba42e1 https://www.encodeproject.org/files/ENCFF094ZSJ/@@download/ENCFF094ZSJ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF890HEQ bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 247153480 ENCODE Processing Pipeline 2173fa7f950b8f058a7887ad7f57ea3b https://www.encodeproject.org/files/ENCFF890HEQ/@@download/ENCFF890HEQ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF955FMV bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 786422756 ENCODE Processing Pipeline f39b291a0eff6d4a827644716244558f https://www.encodeproject.org/files/ENCFF955FMV/@@download/ENCFF955FMV.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF906INE bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 5656449 ENCODE Processing Pipeline ccae6eee137a6eca43b13cf031ab40ef https://www.encodeproject.org/files/ENCFF906INE/@@download/ENCFF906INE.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF735NFJ bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 5936956 ENCODE Processing Pipeline ec78dbf6049c53ca7c1d5745da670af3 https://www.encodeproject.org/files/ENCFF735NFJ/@@download/ENCFF735NFJ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF267GFQ bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 636497894 ENCODE Processing Pipeline 840880993da7da9201371cf7e32dc1a0 https://www.encodeproject.org/files/ENCFF267GFQ/@@download/ENCFF267GFQ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF309VXL bed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF194IYQ, ENCFF735NFJ, ENCFF906INE 331927 ENCODE Processing Pipeline 859cd6b5b5884cd546970f6b40b5b564 https://www.encodeproject.org/files/ENCFF309VXL/@@download/ENCFF309VXL.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF199FYD bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF194IYQ, ENCFF735NFJ, ENCFF906INE 384049 ENCODE Processing Pipeline 07b55f11fdb125a63ab500f783d05d7b https://www.encodeproject.org/files/ENCFF199FYD/@@download/ENCFF199FYD.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF713WZT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199FYD 687358 ENCODE Processing Pipeline 6a0620dc80f01b4eebef2b8de5d7652d https://www.encodeproject.org/files/ENCFF713WZT/@@download/ENCFF713WZT.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF194IYQ bed narrowPeak peaks and background as input for IDR ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 3798265 ENCODE Processing Pipeline fc8a1fe849827f33e155bfdfc02a37f0 https://www.encodeproject.org/files/ENCFF194IYQ/@@download/ENCFF194IYQ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF854KAA bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF906INE 13326676 ENCODE Processing Pipeline e0b423aacaec984ee6801dea2c4f7d1b https://www.encodeproject.org/files/ENCFF854KAA/@@download/ENCFF854KAA.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF253VNE bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF735NFJ 13412328 ENCODE Processing Pipeline 0d38c6d1ba4d2faa25d0a9f220ac813b https://www.encodeproject.org/files/ENCFF253VNE/@@download/ENCFF253VNE.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF236TGB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF309VXL 617016 ENCODE Processing Pipeline acade4e2600f8422bc390cac749de5ba https://www.encodeproject.org/files/ENCFF236TGB/@@download/ENCFF236TGB.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF143SSP bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF194IYQ 8870265 ENCODE Processing Pipeline 73d7c585a0d2a149e238565110980406 https://www.encodeproject.org/files/ENCFF143SSP/@@download/ENCFF143SSP.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000VXV bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 532941923 Michael Snyder, Stanford 9cf9374fa8c6d93c84b0198f5b634ce0 https://www.encodeproject.org/files/ENCFF000VXV/@@download/ENCFF000VXV.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VXW bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 560370485 Michael Snyder, Stanford 826719966d63c2475c37c7c55535b9f7 https://www.encodeproject.org/files/ENCFF000VXW/@@download/ENCFF000VXW.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VXX bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEO 2004985 Michael Snyder, Stanford 3eb85bf247c97f281eac9f1ab98a5719 https://www.encodeproject.org/files/ENCFF000VXX/@@download/ENCFF000VXX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VXY fastq reads ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 899442048 Michael Snyder, Stanford c0beb4ef75168532471614858922b1e4 https://www.encodeproject.org/files/ENCFF000VXY/@@download/ENCFF000VXY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VYA fastq reads ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 990799110 Michael Snyder, Stanford 3227277b9e54b2779062416e453a5c9f https://www.encodeproject.org/files/ENCFF000VYA/@@download/ENCFF000VYA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VYC bigWig signal ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 397803289 Michael Snyder, Stanford 82ff6b69a53e9167e0118fb5decfd75e https://www.encodeproject.org/files/ENCFF000VYC/@@download/ENCFF000VYC.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VEO bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 803413 Michael Snyder, Stanford 333b325248282e3b6b391937a21bca85 https://www.encodeproject.org/files/ENCFF001VEO/@@download/ENCFF001VEO.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COW bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 324987 ENCODE Consortium Analysis Working Group a923b6aa6919e536cb52d9f8be2487b4 https://www.encodeproject.org/files/ENCFF002COW/@@download/ENCFF002COW.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF010EZW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COW 825517 ENCODE Consortium 975280968eadf55a86707b7a0a79b91a https://www.encodeproject.org/files/ENCFF010EZW/@@download/ENCFF010EZW.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF076XQH bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF643CGH 1006071262 ENCODE Processing Pipeline d719d145189d1c88a9eb959e4fffd61e https://www.encodeproject.org/files/ENCFF076XQH/@@download/ENCFF076XQH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF746EMY bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF643CGH 918777742 ENCODE Processing Pipeline 474f6fd647d72dfe9c7c3f5e8f7b3bd6 https://www.encodeproject.org/files/ENCFF746EMY/@@download/ENCFF746EMY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF577KAH bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF643CGH 647409185 ENCODE Processing Pipeline fafa4dcfeb30f270d9736872e0a35120 https://www.encodeproject.org/files/ENCFF577KAH/@@download/ENCFF577KAH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF158TTY bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF643CGH 601003249 ENCODE Processing Pipeline ae0fab79d34b0e4c79a4f7221c23d458 https://www.encodeproject.org/files/ENCFF158TTY/@@download/ENCFF158TTY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF891AOD bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF807MUK 915452305 ENCODE Processing Pipeline 08cb45b32b596d099af6cd41c677ddf4 https://www.encodeproject.org/files/ENCFF891AOD/@@download/ENCFF891AOD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF219JUC bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF807MUK 1003502016 ENCODE Processing Pipeline b73b6e49909fd47bb9c97c2cfab74aff https://www.encodeproject.org/files/ENCFF219JUC/@@download/ENCFF219JUC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF386FSS bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF807MUK 600228288 ENCODE Processing Pipeline f7bf4764af090adaddd114302fa92536 https://www.encodeproject.org/files/ENCFF386FSS/@@download/ENCFF386FSS.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF892REX bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF807MUK 642385480 ENCODE Processing Pipeline 658863e5572f970eabd43e86c20dc6ef https://www.encodeproject.org/files/ENCFF892REX/@@download/ENCFF892REX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF109DBS bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 74152611 ENCODE Processing Pipeline f8f224a7bd34e1cb44ffab40f2a32db5 https://www.encodeproject.org/files/ENCFF109DBS/@@download/ENCFF109DBS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF455RSI bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 231935478 ENCODE Processing Pipeline 619b9e421497b586d4d52a0062dcb074 https://www.encodeproject.org/files/ENCFF455RSI/@@download/ENCFF455RSI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF394OHR bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 162489005 ENCODE Processing Pipeline 5d7aeb32d75faa788f0785ce59db7988 https://www.encodeproject.org/files/ENCFF394OHR/@@download/ENCFF394OHR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF188TJV bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 264760980 ENCODE Processing Pipeline 3d503b7657d642800197e5456fe2eb86 https://www.encodeproject.org/files/ENCFF188TJV/@@download/ENCFF188TJV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF129MWP bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 474637700 ENCODE Processing Pipeline d25fafff8c42b8b12afb787ad3e77bd6 https://www.encodeproject.org/files/ENCFF129MWP/@@download/ENCFF129MWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF173DKW bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 4426090 ENCODE Processing Pipeline 2378c3ce38deeb7f33867522ea39af65 https://www.encodeproject.org/files/ENCFF173DKW/@@download/ENCFF173DKW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF412OKY bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 171884300 ENCODE Processing Pipeline 3dba9fa96b5895aee857d9bc8fa8e52f https://www.encodeproject.org/files/ENCFF412OKY/@@download/ENCFF412OKY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF974XPG bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 4461832 ENCODE Processing Pipeline e97387490d6752ecb997268acf9feaf9 https://www.encodeproject.org/files/ENCFF974XPG/@@download/ENCFF974XPG.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF694JRS bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 5139776 ENCODE Processing Pipeline e62ae5a92f0167124dd7aecc94fdca53 https://www.encodeproject.org/files/ENCFF694JRS/@@download/ENCFF694JRS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF125MIK bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF974XPG 10344465 ENCODE Processing Pipeline 01e3bb005e00dfe0c80388379405df44 https://www.encodeproject.org/files/ENCFF125MIK/@@download/ENCFF125MIK.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF110PAC bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF694JRS 13097079 ENCODE Processing Pipeline b1f7c64d14be9ab3d8c2d1e1e312f6c2 https://www.encodeproject.org/files/ENCFF110PAC/@@download/ENCFF110PAC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF611CRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF083KVY 674056 ENCODE Processing Pipeline 7e4b94764190fe4871637ff77fdbaa92 https://www.encodeproject.org/files/ENCFF611CRC/@@download/ENCFF611CRC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF773UKX bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF173DKW 10382767 ENCODE Processing Pipeline 7d19f7abe207839cfd6bd64f88c6dedf https://www.encodeproject.org/files/ENCFF773UKX/@@download/ENCFF773UKX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF580WAR bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF407JNK 586564 ENCODE Processing Pipeline 84d417159e08f21762f21118216cbff4 https://www.encodeproject.org/files/ENCFF580WAR/@@download/ENCFF580WAR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF407JNK bed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF173DKW, ENCFF694JRS, ENCFF974XPG 283266 ENCODE Processing Pipeline 6128934d8117e90abe56f5ad2686f43a https://www.encodeproject.org/files/ENCFF407JNK/@@download/ENCFF407JNK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF083KVY bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF173DKW, ENCFF694JRS, ENCFF974XPG 337281 ENCODE Processing Pipeline 951409976105220a24dc6e8cf17d2090 https://www.encodeproject.org/files/ENCFF083KVY/@@download/ENCFF083KVY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF334VPE bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 263063269 ENCODE Processing Pipeline cec1c00b58e8f4a1e261d4b265470096 https://www.encodeproject.org/files/ENCFF334VPE/@@download/ENCFF334VPE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF109NUR bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 161829031 ENCODE Processing Pipeline ad1811ab06ab200ceccc37b5dc826931 https://www.encodeproject.org/files/ENCFF109NUR/@@download/ENCFF109NUR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF932TVB bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 74536011 ENCODE Processing Pipeline 787883ed08b692ed7badfd642d403bb2 https://www.encodeproject.org/files/ENCFF932TVB/@@download/ENCFF932TVB.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF652HWZ bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 4428513 ENCODE Processing Pipeline db9565bbfb16d235ffc4b99cf4b568ca https://www.encodeproject.org/files/ENCFF652HWZ/@@download/ENCFF652HWZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF360IMJ bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 4465738 ENCODE Processing Pipeline 133c7cddaac1897afa4f2ec60bc50082 https://www.encodeproject.org/files/ENCFF360IMJ/@@download/ENCFF360IMJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF408NKU bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ 13096107 ENCODE Processing Pipeline c9f74d0095ae22faf78a0715a5dcf4ea https://www.encodeproject.org/files/ENCFF408NKU/@@download/ENCFF408NKU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF280ADG bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 171976425 ENCODE Processing Pipeline 6c9bd2e560fa32bdc9110fe218c8d656 https://www.encodeproject.org/files/ENCFF280ADG/@@download/ENCFF280ADG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF348NRU bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 470939174 ENCODE Processing Pipeline 4522786af72ac9de1b7ba58e4d24c409 https://www.encodeproject.org/files/ENCFF348NRU/@@download/ENCFF348NRU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF215WSJ bed narrowPeak peaks and background as input for IDR ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 5115892 ENCODE Processing Pipeline f4667220849430dd03f25c9aa2529048 https://www.encodeproject.org/files/ENCFF215WSJ/@@download/ENCFF215WSJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF540CNI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF075AKQ 598412 ENCODE Processing Pipeline b922d6012d756d9327a57f439cd885b8 https://www.encodeproject.org/files/ENCFF540CNI/@@download/ENCFF540CNI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF580TPN bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 230037427 ENCODE Processing Pipeline 487962fe2687fde751fb69f41922aa74 https://www.encodeproject.org/files/ENCFF580TPN/@@download/ENCFF580TPN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF445XCO bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF652HWZ 10391308 ENCODE Processing Pipeline 06f1a08a06ada2737f01c3131e39b1af https://www.encodeproject.org/files/ENCFF445XCO/@@download/ENCFF445XCO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF075AKQ bed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ, ENCFF360IMJ, ENCFF419RSJ, ENCFF652HWZ 291049 ENCODE Processing Pipeline 6c5d27d2daf09350ad81f088fd791fda https://www.encodeproject.org/files/ENCFF075AKQ/@@download/ENCFF075AKQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF734LGZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF270NAL 690833 ENCODE Processing Pipeline f10281ddaf42bfa3af115f020bdc6faa https://www.encodeproject.org/files/ENCFF734LGZ/@@download/ENCFF734LGZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF242NRF bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF360IMJ 10345642 ENCODE Processing Pipeline 9ef86b37aa8b2b0b5cb65114eb9d57dd https://www.encodeproject.org/files/ENCFF242NRF/@@download/ENCFF242NRF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF270NAL bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ, ENCFF360IMJ, ENCFF419RSJ, ENCFF652HWZ 348024 ENCODE Processing Pipeline 7c7213a90e1e95819536c530e0fa54b8 https://www.encodeproject.org/files/ENCFF270NAL/@@download/ENCFF270NAL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF000NXF bigBed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXM 627176 Richard Myers, HAIB 6d738d20bca838f9c8995036c6fbbc42 https://www.encodeproject.org/files/ENCFF000NXF/@@download/ENCFF000NXF.bigBed hg19 archived borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXG bigBed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXN 973497 Richard Myers, HAIB a922477259b61907ab7c966ad624689b https://www.encodeproject.org/files/ENCFF000NXG/@@download/ENCFF000NXG.bigBed hg19 archived borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXH bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NXS 1781920093 Richard Myers, HAIB bb7e51815add8c05b57bf70ea024a7e2 https://www.encodeproject.org/files/ENCFF000NXH/@@download/ENCFF000NXH.bam hg19 archived borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXI bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NXT 1998873501 Richard Myers, HAIB 6ed47cc000eedcece3ae4b17bbfb7518 https://www.encodeproject.org/files/ENCFF000NXI/@@download/ENCFF000NXI.bam hg19 archived borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXK bigWig raw signal ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 23014647 Richard Myers, HAIB 78df316d2da41ec0780971469e5424ff https://www.encodeproject.org/files/ENCFF000NXK/@@download/ENCFF000NXK.bigWig hg19 archived borderline replicate concordance, low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NXL bigWig raw signal ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 43546270 Richard Myers, HAIB 6308b3ad00ee633e6402a752b3cb57ab https://www.encodeproject.org/files/ENCFF000NXL/@@download/ENCFF000NXL.bigWig hg19 archived borderline replicate concordance, low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NXS fastq reads ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1733233761 Richard Myers, HAIB a5e198a9b58bb3c4ea62124ad6ac53c3 https://www.encodeproject.org/files/ENCFF000NXS/@@download/ENCFF000NXS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXT fastq reads ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1934776182 Richard Myers, HAIB b62bc8ce3c68473080429cfc219eecfa https://www.encodeproject.org/files/ENCFF000NXT/@@download/ENCFF000NXT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TXM bed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 321574 Richard Myers, HAIB dfc0edebdadc973cc4b31a064a019a1a https://www.encodeproject.org/files/ENCFF001TXM/@@download/ENCFF001TXM.bed.gz hg19 archived borderline replicate concordance, low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TXN bed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 637122 Richard Myers, HAIB e9e00b6c695dd6ebf2ae7a85dbe15ca9 https://www.encodeproject.org/files/ENCFF001TXN/@@download/ENCFF001TXN.bed.gz hg19 archived borderline replicate concordance, low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHE bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 278252 ENCODE Consortium Analysis Working Group 82bd6f9b6af45c6d54c8a54938b9ad60 https://www.encodeproject.org/files/ENCFF002CHE/@@download/ENCFF002CHE.bed.gz hg19 archived borderline replicate concordance, low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF493WPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHE 704123 ENCODE Consortium c7800428d24497045f1f5cdeb2ec688a https://www.encodeproject.org/files/ENCFF493WPQ/@@download/ENCFF493WPQ.bigBed hg19 archived borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF460FPN bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF643CGH 1323854644 ENCODE Processing Pipeline 7de773e47535fbcfa197a2efea3ac334 https://www.encodeproject.org/files/ENCFF460FPN/@@download/ENCFF460FPN.bam GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF817YQB bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF643CGH 1954456697 ENCODE Processing Pipeline 03c82264e97e65ce113f22522e6f8e4c https://www.encodeproject.org/files/ENCFF817YQB/@@download/ENCFF817YQB.bam GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF310HBV bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF643CGH 2129081320 ENCODE Processing Pipeline 4f3fb3758c52209c830320fa8c0506d6 https://www.encodeproject.org/files/ENCFF310HBV/@@download/ENCFF310HBV.bam GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF682HUS bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF643CGH 1379189555 ENCODE Processing Pipeline 1cd6c6b083519cdcae9d3732cf37af94 https://www.encodeproject.org/files/ENCFF682HUS/@@download/ENCFF682HUS.bam GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF390XDX bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF807MUK 1951014201 ENCODE Processing Pipeline fc04ddf78d5179efdd8f6ca82750aaac https://www.encodeproject.org/files/ENCFF390XDX/@@download/ENCFF390XDX.bam hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF712MCI bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF807MUK 2128276849 ENCODE Processing Pipeline 6ea395052df98c54d11ecbfe289152d1 https://www.encodeproject.org/files/ENCFF712MCI/@@download/ENCFF712MCI.bam hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF420JTZ bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF807MUK 1318420704 ENCODE Processing Pipeline a13d550c92ed22718bcc0b1ab646b129 https://www.encodeproject.org/files/ENCFF420JTZ/@@download/ENCFF420JTZ.bam hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF441NFC bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF807MUK 1371827399 ENCODE Processing Pipeline 67fb6af540890a2d6be971ec29ee38e3 https://www.encodeproject.org/files/ENCFF441NFC/@@download/ENCFF441NFC.bam hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF353HRU bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 694418513 ENCODE Processing Pipeline 2c25e7ecd7836c655cb8ce12060b8e02 https://www.encodeproject.org/files/ENCFF353HRU/@@download/ENCFF353HRU.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF250UMZ bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 613431754 ENCODE Processing Pipeline c155b0fed5f2db5fbcd54f5e443a1e64 https://www.encodeproject.org/files/ENCFF250UMZ/@@download/ENCFF250UMZ.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF006AYB bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 811473159 ENCODE Processing Pipeline 319df47b319ec22cd31e09066451c671 https://www.encodeproject.org/files/ENCFF006AYB/@@download/ENCFF006AYB.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF092PKL bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 618064029 ENCODE Processing Pipeline 815d6df802f898394c7365563fb7a0ca https://www.encodeproject.org/files/ENCFF092PKL/@@download/ENCFF092PKL.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF655JEP bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 1037505298 ENCODE Processing Pipeline a4ab6181f01828bb8b6dfb47c5a1c77f https://www.encodeproject.org/files/ENCFF655JEP/@@download/ENCFF655JEP.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF435YJX bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 623504829 ENCODE Processing Pipeline 848e46b09ffcb865e49dc7e37209d7cf https://www.encodeproject.org/files/ENCFF435YJX/@@download/ENCFF435YJX.bigWig GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF439SFD bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 7180783 ENCODE Processing Pipeline 0539b50cd6a50d6fa1dc4589f09b1eaa https://www.encodeproject.org/files/ENCFF439SFD/@@download/ENCFF439SFD.bed.gz GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF240AWE bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF439SFD 12348685 ENCODE Processing Pipeline 561eed83272dc4079e2211afd872fc75 https://www.encodeproject.org/files/ENCFF240AWE/@@download/ENCFF240AWE.bigBed GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF671GGV bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 6993039 ENCODE Processing Pipeline 185f86ec63185add01c6ef2a769afee1 https://www.encodeproject.org/files/ENCFF671GGV/@@download/ENCFF671GGV.bed.gz GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF711PSU bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF671GGV 12177450 ENCODE Processing Pipeline db5aea1e123f55c9f390b4406a5a613c https://www.encodeproject.org/files/ENCFF711PSU/@@download/ENCFF711PSU.bigBed GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF947BLB bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF201UEN 12657161 ENCODE Processing Pipeline ee65dd12d49a90bff6cd833dee162c6d https://www.encodeproject.org/files/ENCFF947BLB/@@download/ENCFF947BLB.bigBed GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF661FMB bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201UEN, ENCFF419RSJ, ENCFF439SFD, ENCFF671GGV 312895 ENCODE Processing Pipeline 44faaa2741c9021d9b8257fcca2ea2cb https://www.encodeproject.org/files/ENCFF661FMB/@@download/ENCFF661FMB.bed.gz GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF049FPS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112SWI 531254 ENCODE Processing Pipeline c159669b462311d6468b50eb5a00d4ff https://www.encodeproject.org/files/ENCFF049FPS/@@download/ENCFF049FPS.bigBed GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF201UEN bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 6850120 ENCODE Processing Pipeline ddcef1c4a424871f795eb8d59e0a4d79 https://www.encodeproject.org/files/ENCFF201UEN/@@download/ENCFF201UEN.bed.gz GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF112SWI bed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201UEN, ENCFF419RSJ, ENCFF439SFD, ENCFF671GGV 248510 ENCODE Processing Pipeline c4d43674581b9d0fe6623ef003f9dfb6 https://www.encodeproject.org/files/ENCFF112SWI/@@download/ENCFF112SWI.bed.gz GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF359XTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF661FMB 629393 ENCODE Processing Pipeline 1e6fd19c9b4f3d49c3f1f78ad87cf1b9 https://www.encodeproject.org/files/ENCFF359XTI/@@download/ENCFF359XTI.bigBed GRCh38 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF130IRQ bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 656112496 ENCODE Processing Pipeline ba81a0c142243f14b5fb3539aacb0284 https://www.encodeproject.org/files/ENCFF130IRQ/@@download/ENCFF130IRQ.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF869CSW bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 663110805 ENCODE Processing Pipeline 0bfcacffd32f01bd8963c81283c8d6eb https://www.encodeproject.org/files/ENCFF869CSW/@@download/ENCFF869CSW.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF304JAD bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 617514873 ENCODE Processing Pipeline bd844834bfec7474c6fed6a27b6b25d9 https://www.encodeproject.org/files/ENCFF304JAD/@@download/ENCFF304JAD.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF181SIR bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 803613127 ENCODE Processing Pipeline 1bc3e9fe3d801217d11eb1a5ac3f2a1c https://www.encodeproject.org/files/ENCFF181SIR/@@download/ENCFF181SIR.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF040FGY bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 619634162 ENCODE Processing Pipeline 0fa995e15862c3aa3c2917a0b8d2e2f8 https://www.encodeproject.org/files/ENCFF040FGY/@@download/ENCFF040FGY.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF906VFS bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 1021987491 ENCODE Processing Pipeline 8ffbdad3616b5a7610229492369b0eb3 https://www.encodeproject.org/files/ENCFF906VFS/@@download/ENCFF906VFS.bigWig hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF574RLW bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 7111374 ENCODE Processing Pipeline cf8a5f09dbdfe47045ca6d490ea4c67b https://www.encodeproject.org/files/ENCFF574RLW/@@download/ENCFF574RLW.bed.gz hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF457WBH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF611WSJ 526229 ENCODE Processing Pipeline db95f295b87078b33061d56260c5e6b4 https://www.encodeproject.org/files/ENCFF457WBH/@@download/ENCFF457WBH.bigBed hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF202XQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF413VUC 645882 ENCODE Processing Pipeline 8328d21cb9c40bf1aa0e417021698cd1 https://www.encodeproject.org/files/ENCFF202XQV/@@download/ENCFF202XQV.bigBed hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF611WSJ bed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UYK, ENCFF574RLW, ENCFF600RTA 244271 ENCODE Processing Pipeline e04c0db5534192819aaab3547f10e094 https://www.encodeproject.org/files/ENCFF611WSJ/@@download/ENCFF611WSJ.bed.gz hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF496UYK bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 6892196 ENCODE Processing Pipeline 6249aeafbda77ae037a51105225000bc https://www.encodeproject.org/files/ENCFF496UYK/@@download/ENCFF496UYK.bed.gz hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF600RTA bed narrowPeak peaks and background as input for IDR ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 7195967 ENCODE Processing Pipeline 8529367d407e1d60f0a7c73d126a97b2 https://www.encodeproject.org/files/ENCFF600RTA/@@download/ENCFF600RTA.bed.gz hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF101PFI bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF496UYK 12687514 ENCODE Processing Pipeline 7729517f0f7f2c687e2cd9fdc0e539d8 https://www.encodeproject.org/files/ENCFF101PFI/@@download/ENCFF101PFI.bigBed hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF820WNI bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF574RLW 12329614 ENCODE Processing Pipeline 54fb29b546488a235958cbf9a80677b6 https://www.encodeproject.org/files/ENCFF820WNI/@@download/ENCFF820WNI.bigBed hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF149NUP bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF600RTA 12374793 ENCODE Processing Pipeline 5c122c01c3211b49381307cd26ee44fa https://www.encodeproject.org/files/ENCFF149NUP/@@download/ENCFF149NUP.bigBed hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF413VUC bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UYK, ENCFF574RLW, ENCFF600RTA 322940 ENCODE Processing Pipeline 986211e162ebe80002d15d053f4e37f8 https://www.encodeproject.org/files/ENCFF413VUC/@@download/ENCFF413VUC.bed.gz hg19 released borderline replicate concordance, low read length, inconsistent platforms biological replicates with identical biosample ENCFF002ECY fastq reads ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 785413815 Michael Snyder, Stanford 470ed9d5386db86baab77e862a1e2baf SRA:SRR5111955 https://www.encodeproject.org/files/ENCFF002ECY/@@download/ENCFF002ECY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, low read depth ENCFF002EDA fastq reads ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 644174381 Michael Snyder, Stanford e6e3f8876a9ec3734bd9e5438220449b SRA:SRR5111954 https://www.encodeproject.org/files/ENCFF002EDA/@@download/ENCFF002EDA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, low read depth ENCFF573GQJ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF807MUK 721756844 ENCODE Processing Pipeline ec60e61ed6eb416cc1af11832bc196db https://www.encodeproject.org/files/ENCFF573GQJ/@@download/ENCFF573GQJ.bam hg19 released low read length, low read depth ENCFF707LIB bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF807MUK 570933506 ENCODE Processing Pipeline 77aa19a4f0d5db98b70b971c47e7268d https://www.encodeproject.org/files/ENCFF707LIB/@@download/ENCFF707LIB.bam hg19 released low read length, low read depth ENCFF661MKA bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 475018240 ENCODE Processing Pipeline a3cc4a9a8dffb58de187074a46abc517 https://www.encodeproject.org/files/ENCFF661MKA/@@download/ENCFF661MKA.bigWig hg19 released low read length, low read depth ENCFF957AZE bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 577951214 ENCODE Processing Pipeline 07ef2f45b9197207f07766dc49f6fad0 https://www.encodeproject.org/files/ENCFF957AZE/@@download/ENCFF957AZE.bigWig hg19 released low read length, low read depth ENCFF683FLJ bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 385106198 ENCODE Processing Pipeline 80d05c066352fda5f3e2435aea22fe7e https://www.encodeproject.org/files/ENCFF683FLJ/@@download/ENCFF683FLJ.bigWig hg19 released low read length, low read depth ENCFF148PWG bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 356886688 ENCODE Processing Pipeline b3cca58749eac3db33dce8bd104dfec4 https://www.encodeproject.org/files/ENCFF148PWG/@@download/ENCFF148PWG.bigWig hg19 released low read length, low read depth ENCFF810XMW bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF643CGH 823096242 ENCODE Processing Pipeline 1f34b9f83fc2b6b5323552adaf007e4a https://www.encodeproject.org/files/ENCFF810XMW/@@download/ENCFF810XMW.bam GRCh38 released low read length, low read depth ENCFF323BGI bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF643CGH 998217303 ENCODE Processing Pipeline 555743f6ed04bf1b530779eb569fcbdf https://www.encodeproject.org/files/ENCFF323BGI/@@download/ENCFF323BGI.bam GRCh38 released low read length, low read depth ENCFF462BSP bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF643CGH 571228033 ENCODE Processing Pipeline 5e19928823a8bcc9702e3a35291c1de7 https://www.encodeproject.org/files/ENCFF462BSP/@@download/ENCFF462BSP.bam GRCh38 released low read length, low read depth ENCFF787QFQ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF643CGH 722146162 ENCODE Processing Pipeline 5824fb2f0f2085247f027ce8a4016e4f https://www.encodeproject.org/files/ENCFF787QFQ/@@download/ENCFF787QFQ.bam GRCh38 released low read length, low read depth ENCFF140GTD bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 513321138 ENCODE Processing Pipeline 2967c435208acb36decfe3f49151ddb9 https://www.encodeproject.org/files/ENCFF140GTD/@@download/ENCFF140GTD.bigWig GRCh38 released low read length, low read depth ENCFF290PXX bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 506206389 ENCODE Processing Pipeline c4f670686d57fedcd257304f1efbef4a https://www.encodeproject.org/files/ENCFF290PXX/@@download/ENCFF290PXX.bigWig GRCh38 released low read length, low read depth ENCFF326HWU bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 928438990 ENCODE Processing Pipeline 5b6ccc03e06e94769a39e98c6e83db8c https://www.encodeproject.org/files/ENCFF326HWU/@@download/ENCFF326HWU.bigWig GRCh38 released low read length, low read depth ENCFF729CXV bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 387511387 ENCODE Processing Pipeline 3c11d411793fa21febdab25b894d8ffa https://www.encodeproject.org/files/ENCFF729CXV/@@download/ENCFF729CXV.bigWig GRCh38 released low read length, low read depth ENCFF818PLM bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 357424470 ENCODE Processing Pipeline a2da880d2bf9d9e2d83d1c296bf526b5 https://www.encodeproject.org/files/ENCFF818PLM/@@download/ENCFF818PLM.bigWig GRCh38 released low read length, low read depth ENCFF586FDC bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 832133480 ENCODE Processing Pipeline dc18e065e01eab072216b4dbaef01358 https://www.encodeproject.org/files/ENCFF586FDC/@@download/ENCFF586FDC.bigWig GRCh38 released low read length, low read depth ENCFF340NHS bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 3966516 ENCODE Processing Pipeline 8130e1d65d057d777601f7c9ee65aba3 https://www.encodeproject.org/files/ENCFF340NHS/@@download/ENCFF340NHS.bed.gz GRCh38 released low read length, low read depth ENCFF931IOD bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF340NHS 10626532 ENCODE Processing Pipeline 7395edbb40767993c6bff0dda1c3f2f5 https://www.encodeproject.org/files/ENCFF931IOD/@@download/ENCFF931IOD.bigBed GRCh38 released low read length, low read depth ENCFF972TIP bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF899LRY 10572546 ENCODE Processing Pipeline 4f4e9c449ecb09510916c7161255ae25 https://www.encodeproject.org/files/ENCFF972TIP/@@download/ENCFF972TIP.bigBed GRCh38 released low read length, low read depth ENCFF899LRY bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 4127250 ENCODE Processing Pipeline b8a4b1dcb633b314d35aab5eb9d82761 https://www.encodeproject.org/files/ENCFF899LRY/@@download/ENCFF899LRY.bed.gz GRCh38 released low read length, low read depth ENCFF570ZOZ bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF669IHV 11542436 ENCODE Processing Pipeline 2dc9755bf17cc6e46a14e1218f15e0bc https://www.encodeproject.org/files/ENCFF570ZOZ/@@download/ENCFF570ZOZ.bigBed GRCh38 released low read length, low read depth ENCFF334NEC bigBed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF736WUM 86325 ENCODE Processing Pipeline 4bae6f5b2ee00d38007b9bf163312abb https://www.encodeproject.org/files/ENCFF334NEC/@@download/ENCFF334NEC.bigBed GRCh38 released low read length, low read depth ENCFF669IHV bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 5134208 ENCODE Processing Pipeline 8dc4a0593a8386cadb72d3d34b7fe61c https://www.encodeproject.org/files/ENCFF669IHV/@@download/ENCFF669IHV.bed.gz GRCh38 released low read length, low read depth ENCFF736WUM bed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF340NHS, ENCFF419RSJ, ENCFF669IHV, ENCFF899LRY 24735 ENCODE Processing Pipeline 18dca7bd536ddcb286143c1b2fb7ea99 https://www.encodeproject.org/files/ENCFF736WUM/@@download/ENCFF736WUM.bed.gz GRCh38 released low read length, low read depth ENCFF506QAO bigBed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF786YYI 111164 ENCODE Processing Pipeline 151ef864fb672b0acff73cef6b4df7e7 https://www.encodeproject.org/files/ENCFF506QAO/@@download/ENCFF506QAO.bigBed GRCh38 released low read length, low read depth ENCFF786YYI bed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF340NHS, ENCFF419RSJ, ENCFF669IHV, ENCFF899LRY 43696 ENCODE Processing Pipeline ea9c25533ae0e7656574a3e8437fd3a3 https://www.encodeproject.org/files/ENCFF786YYI/@@download/ENCFF786YYI.bed.gz GRCh38 released low read length, low read depth ENCFF523VUD bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF807MUK 818834430 ENCODE Processing Pipeline bf728ed652f8d1c38d465228f5fabc40 https://www.encodeproject.org/files/ENCFF523VUD/@@download/ENCFF523VUD.bam hg19 released low read length, low read depth ENCFF403OCE bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF807MUK 993587786 ENCODE Processing Pipeline 307b70c657cedef4eb3c1347e855c2dd https://www.encodeproject.org/files/ENCFF403OCE/@@download/ENCFF403OCE.bam hg19 released low read length, low read depth ENCFF488BKD bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF284OML 10693493 ENCODE Processing Pipeline 3a7c57da45efde5187e72e60e14c9903 https://www.encodeproject.org/files/ENCFF488BKD/@@download/ENCFF488BKD.bigBed hg19 released low read length, low read depth ENCFF761MGJ bed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF017STY, ENCFF284OML, ENCFF300RLB 41700 ENCODE Processing Pipeline 380214c27906f67ff28dec054d68900a https://www.encodeproject.org/files/ENCFF761MGJ/@@download/ENCFF761MGJ.bed.gz hg19 released low read length, low read depth ENCFF481MMI bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 830418563 ENCODE Processing Pipeline c9acd4184a060b16a00276e351db4aaf https://www.encodeproject.org/files/ENCFF481MMI/@@download/ENCFF481MMI.bigWig hg19 released low read length, low read depth ENCFF985OOR bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 929024662 ENCODE Processing Pipeline d1f003e49906debcc4c57e552cf4bbd1 https://www.encodeproject.org/files/ENCFF985OOR/@@download/ENCFF985OOR.bigWig hg19 released low read length, low read depth ENCFF300RLB bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 3989931 ENCODE Processing Pipeline 63a953c29fe9ecd800a8669dbce70dc2 https://www.encodeproject.org/files/ENCFF300RLB/@@download/ENCFF300RLB.bed.gz hg19 released low read length, low read depth ENCFF284OML bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 4163465 ENCODE Processing Pipeline 16f46cbe832639a29f8cd0e8298c06a5 https://www.encodeproject.org/files/ENCFF284OML/@@download/ENCFF284OML.bed.gz hg19 released low read length, low read depth ENCFF776SJV bigBed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF701HMB 85290 ENCODE Processing Pipeline b8893e4a3dd52133670ef5cdaee31835 https://www.encodeproject.org/files/ENCFF776SJV/@@download/ENCFF776SJV.bigBed hg19 released low read length, low read depth ENCFF713GIT bigBed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF761MGJ 108048 ENCODE Processing Pipeline 8961912a122f57eac9d02f577142abf6 https://www.encodeproject.org/files/ENCFF713GIT/@@download/ENCFF713GIT.bigBed hg19 released low read length, low read depth ENCFF017STY bed narrowPeak peaks and background as input for IDR ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 5162479 ENCODE Processing Pipeline 3cb6019de1360b67e5b77a4f8af64464 https://www.encodeproject.org/files/ENCFF017STY/@@download/ENCFF017STY.bed.gz hg19 released low read length, low read depth ENCFF943SYZ bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF300RLB 10602972 ENCODE Processing Pipeline e3a8b32227bebebe88d1b17141d5c54b https://www.encodeproject.org/files/ENCFF943SYZ/@@download/ENCFF943SYZ.bigBed hg19 released low read length, low read depth ENCFF701HMB bed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF017STY, ENCFF284OML, ENCFF300RLB 24646 ENCODE Processing Pipeline 6adf828cfedc2895068a98b7807ac904 https://www.encodeproject.org/files/ENCFF701HMB/@@download/ENCFF701HMB.bed.gz hg19 released low read length, low read depth ENCFF755YYI bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF017STY 11527071 ENCODE Processing Pipeline 3a2d24dc5daaed79efd76e1d58417659 https://www.encodeproject.org/files/ENCFF755YYI/@@download/ENCFF755YYI.bigBed hg19 released low read length, low read depth ENCFF362UKM bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF807MUK 5088961795 ENCODE Processing Pipeline f46906c5a26c5cadd62bfd895925bf26 https://www.encodeproject.org/files/ENCFF362UKM/@@download/ENCFF362UKM.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF526WJF bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF807MUK 4909991038 ENCODE Processing Pipeline 39b3dee9e6677e5235f81696f778aefc https://www.encodeproject.org/files/ENCFF526WJF/@@download/ENCFF526WJF.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKI fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKM 2325920028 Michael Snyder, Stanford f3e499b93e9f4d64df9604928817d30f https://www.encodeproject.org/files/ENCFF002EKI/@@download/ENCFF002EKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKJ fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKT 2198116554 Michael Snyder, Stanford f1a9c555135528d749e94904b4e3f391 https://www.encodeproject.org/files/ENCFF002EKJ/@@download/ENCFF002EKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKM fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKI 2366611655 Michael Snyder, Stanford 3a8a4bac3e2f8c156a35c1e84deb8536 https://www.encodeproject.org/files/ENCFF002EKM/@@download/ENCFF002EKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKT fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EKJ 2242835483 Michael Snyder, Stanford 9faf15c5f8f689bc8e9be537bf0411f3 https://www.encodeproject.org/files/ENCFF002EKT/@@download/ENCFF002EKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002JGD bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF807MUK 3930497896 ENCODE Processing Pipeline 3bf546708f6c2602130f5add5e769911 https://www.encodeproject.org/files/ENCFF002JGD/@@download/ENCFF002JGD.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931ITC bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF807MUK 3795961046 ENCODE Processing Pipeline 7beaa909df175c7779f182f1772e5967 https://www.encodeproject.org/files/ENCFF931ITC/@@download/ENCFF931ITC.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF046BNG bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 1102301246 ENCODE Processing Pipeline 25bf07bcf6371aa0560521e9b6a0e232 https://www.encodeproject.org/files/ENCFF046BNG/@@download/ENCFF046BNG.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF327UEZ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 1713393482 ENCODE Processing Pipeline 8fd5bcc3b5386a86460aa077661928e1 https://www.encodeproject.org/files/ENCFF327UEZ/@@download/ENCFF327UEZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF432GBP bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 1063429232 ENCODE Processing Pipeline 0b65e7c2e642f9f997c5d45c65da63d6 https://www.encodeproject.org/files/ENCFF432GBP/@@download/ENCFF432GBP.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931DSJ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 1086276363 ENCODE Processing Pipeline eea89beb08edd00cf76714d76a6e6c94 https://www.encodeproject.org/files/ENCFF931DSJ/@@download/ENCFF931DSJ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF431KTX bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 1088726145 ENCODE Processing Pipeline df6da2892e975f8b5ddf16c9627d8ac3 https://www.encodeproject.org/files/ENCFF431KTX/@@download/ENCFF431KTX.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF279FLZ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 2027795132 ENCODE Processing Pipeline 373aa5e6cab56985befc89a8efe3a082 https://www.encodeproject.org/files/ENCFF279FLZ/@@download/ENCFF279FLZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF420QNU bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF643CGH 4907454093 ENCODE Processing Pipeline c73f4df3fbb7aa4460cbc2dc92887918 https://www.encodeproject.org/files/ENCFF420QNU/@@download/ENCFF420QNU.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF852DJJ bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF643CGH 5093279543 ENCODE Processing Pipeline 1b99a20767cc79e49f7b3bda1d7f62d0 https://www.encodeproject.org/files/ENCFF852DJJ/@@download/ENCFF852DJJ.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF849XDW bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF643CGH 3802571693 ENCODE Processing Pipeline 10cf7632fdce01b546e16f789ca60328 https://www.encodeproject.org/files/ENCFF849XDW/@@download/ENCFF849XDW.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF226FBM bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF643CGH 3973114767 ENCODE Processing Pipeline 4f930d90696465436d533ebc20b9afb1 https://www.encodeproject.org/files/ENCFF226FBM/@@download/ENCFF226FBM.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF432OJJ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 1124511789 ENCODE Processing Pipeline 6993c232ff09209ddc9cecee5ab2ecbb https://www.encodeproject.org/files/ENCFF432OJJ/@@download/ENCFF432OJJ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF019OTJ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 1980519746 ENCODE Processing Pipeline 4951657ab3d33ba7f02417589dc056d2 https://www.encodeproject.org/files/ENCFF019OTJ/@@download/ENCFF019OTJ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF004DDK bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 979822777 ENCODE Processing Pipeline 53180d1bef3f3f814c31b1f1887ef403 https://www.encodeproject.org/files/ENCFF004DDK/@@download/ENCFF004DDK.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF903OEX bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF550DRQ 11386047 ENCODE Processing Pipeline 209df8652bd0b39b701c1937c6e5f4ba https://www.encodeproject.org/files/ENCFF903OEX/@@download/ENCFF903OEX.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF870FTO bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 1088210227 ENCODE Processing Pipeline 3c0dfd60e44b9468f5ff366fbc012aec https://www.encodeproject.org/files/ENCFF870FTO/@@download/ENCFF870FTO.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF777PHZ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 1075787838 ENCODE Processing Pipeline ea60fc6bb47090ab40b7312249bda0cc https://www.encodeproject.org/files/ENCFF777PHZ/@@download/ENCFF777PHZ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF217RFD bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 2035365174 ENCODE Processing Pipeline b34f148e1b5725d53ecfffde865c6a28 https://www.encodeproject.org/files/ENCFF217RFD/@@download/ENCFF217RFD.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF379JVC bed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF166TCT, ENCFF419RSJ, ENCFF550DRQ, ENCFF890TBO 136856 ENCODE Processing Pipeline d25e043ff8954898a923920035dc1edf https://www.encodeproject.org/files/ENCFF379JVC/@@download/ENCFF379JVC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF166TCT bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 6156223 ENCODE Processing Pipeline ae14c663bdba6db777c34cd3c1521816 https://www.encodeproject.org/files/ENCFF166TCT/@@download/ENCFF166TCT.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF550DRQ bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 6075252 ENCODE Processing Pipeline 18fc7de65b36b9deeaa45f84e4693f8e https://www.encodeproject.org/files/ENCFF550DRQ/@@download/ENCFF550DRQ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF109RPN bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF166TCT 13481135 ENCODE Processing Pipeline fc7e104aab4e5fa7aa6754c66f1f72dd https://www.encodeproject.org/files/ENCFF109RPN/@@download/ENCFF109RPN.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF890TBO bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 7072692 ENCODE Processing Pipeline 51b8e19b78d5329ef0e10e6db8b2b2e9 https://www.encodeproject.org/files/ENCFF890TBO/@@download/ENCFF890TBO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF406PMG bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF890TBO 13314181 ENCODE Processing Pipeline cac1f805ecbdadac40a47cc86d0bdce6 https://www.encodeproject.org/files/ENCFF406PMG/@@download/ENCFF406PMG.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF124SIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF379JVC 297519 ENCODE Processing Pipeline 97866e6f3ca383a15fa39400ab09e175 https://www.encodeproject.org/files/ENCFF124SIJ/@@download/ENCFF124SIJ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF417WPC bed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF166TCT, ENCFF419RSJ, ENCFF550DRQ, ENCFF890TBO 252129 ENCODE Processing Pipeline 9872e956eae773a04469d0199b0deeee https://www.encodeproject.org/files/ENCFF417WPC/@@download/ENCFF417WPC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF022PXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF417WPC 553846 ENCODE Processing Pipeline f2365477f6e9631b5b957e4b46adc763 https://www.encodeproject.org/files/ENCFF022PXQ/@@download/ENCFF022PXQ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF782MKD bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 6058390 ENCODE Processing Pipeline ae453d52e1d9748a41d0e88ba30dd4fe https://www.encodeproject.org/files/ENCFF782MKD/@@download/ENCFF782MKD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF823PTQ bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF782MKD 11366169 ENCODE Processing Pipeline 1387f5ddb906f797b06f0334674aa00f https://www.encodeproject.org/files/ENCFF823PTQ/@@download/ENCFF823PTQ.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF219UCA bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 6147706 ENCODE Processing Pipeline 836543c3ab382799f66b46fae9aeb8a4 https://www.encodeproject.org/files/ENCFF219UCA/@@download/ENCFF219UCA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF608ISH bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF630UZO 13328076 ENCODE Processing Pipeline 6a3358a99b65bead5719a3e559a1d18a https://www.encodeproject.org/files/ENCFF608ISH/@@download/ENCFF608ISH.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF630UZO bed narrowPeak peaks and background as input for IDR ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 7089030 ENCODE Processing Pipeline 05aa00e9a99e2f275f82153b617aecf7 https://www.encodeproject.org/files/ENCFF630UZO/@@download/ENCFF630UZO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF982WPP bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF219UCA 13464350 ENCODE Processing Pipeline b8973c570be3a9875b0e4029fe115bd9 https://www.encodeproject.org/files/ENCFF982WPP/@@download/ENCFF982WPP.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF762AZG bed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF219UCA, ENCFF630UZO, ENCFF782MKD 142482 ENCODE Processing Pipeline 04c96f4e6341541801ffe906cd938dfc https://www.encodeproject.org/files/ENCFF762AZG/@@download/ENCFF762AZG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF827ZLB bed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF219UCA, ENCFF630UZO, ENCFF782MKD 257031 ENCODE Processing Pipeline 8522928cab6ad14973b5bb00ec993f01 https://www.encodeproject.org/files/ENCFF827ZLB/@@download/ENCFF827ZLB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF496ARE bigBed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF762AZG 303905 ENCODE Processing Pipeline 495302b925719b9e16971946e5781271 https://www.encodeproject.org/files/ENCFF496ARE/@@download/ENCFF496ARE.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF275LWN bigBed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF827ZLB 560445 ENCODE Processing Pipeline 36ce59609e3875597f8052e951754331 https://www.encodeproject.org/files/ENCFF275LWN/@@download/ENCFF275LWN.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF000OBV bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OCE 491135724 Richard Myers, HAIB cb4fed94e02be4ca34824de0f51baa42 https://www.encodeproject.org/files/ENCFF000OBV/@@download/ENCFF000OBV.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OBX bigBed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYQ 976445 Richard Myers, HAIB 682160161c51dfd5f78d95bcbf87258a https://www.encodeproject.org/files/ENCFF000OBX/@@download/ENCFF000OBX.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OBZ bigBed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYR 1134791 Richard Myers, HAIB 75682dd0ab6d2f84a1b2af3c1e0797d6 https://www.encodeproject.org/files/ENCFF000OBZ/@@download/ENCFF000OBZ.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OCA bigWig raw signal ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 21962074 Richard Myers, HAIB 516e956e299d581a268df29f877fcb39 https://www.encodeproject.org/files/ENCFF000OCA/@@download/ENCFF000OCA.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OCB bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OCH 882962705 Richard Myers, HAIB ef6427f2b417c38f4d6f1013206e758e https://www.encodeproject.org/files/ENCFF000OCB/@@download/ENCFF000OCB.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OCC bigWig raw signal ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 43332415 Richard Myers, HAIB a25912db3e4d82aac8350073b91ed74f https://www.encodeproject.org/files/ENCFF000OCC/@@download/ENCFF000OCC.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OCE fastq reads ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 478254246 Richard Myers, HAIB f721fbd5213b3a111ee3940e5736dae5 https://www.encodeproject.org/files/ENCFF000OCE/@@download/ENCFF000OCE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OCH fastq reads ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 993852975 Richard Myers, HAIB 7153b0488cbded3d235bf976f5bb9100 https://www.encodeproject.org/files/ENCFF000OCH/@@download/ENCFF000OCH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001TYQ bed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 522149 Richard Myers, HAIB 1b1302d96ffb5c871b8c48b66a939c65 https://www.encodeproject.org/files/ENCFF001TYQ/@@download/ENCFF001TYQ.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TYR bed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 674566 Richard Myers, HAIB 531034b4d4c60f1341b804418f7b2b3a https://www.encodeproject.org/files/ENCFF001TYR/@@download/ENCFF001TYR.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CHR bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 784543 ENCODE Consortium Analysis Working Group 7ddac173d34f70fa26a89f569581c19f https://www.encodeproject.org/files/ENCFF002CHR/@@download/ENCFF002CHR.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF869VMU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHR 1493578 ENCODE Consortium 06cc25098f4286c992b7235b8fa33f95 https://www.encodeproject.org/files/ENCFF869VMU/@@download/ENCFF869VMU.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF901DWV bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF643CGH 582410225 ENCODE Processing Pipeline c15b23e1fb76e8f1a93a1ac262617d6e https://www.encodeproject.org/files/ENCFF901DWV/@@download/ENCFF901DWV.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF545ETC bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF643CGH 342142700 ENCODE Processing Pipeline 707837ef99d6cd7ef46216bf4cf79a6b https://www.encodeproject.org/files/ENCFF545ETC/@@download/ENCFF545ETC.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF175RHE bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF643CGH 1077232191 ENCODE Processing Pipeline 8f2aeec646a58c785352418914dcd0e5 https://www.encodeproject.org/files/ENCFF175RHE/@@download/ENCFF175RHE.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF310ZIS bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF643CGH 468026801 ENCODE Processing Pipeline 6d646037df94f8378c442cf792bda946 https://www.encodeproject.org/files/ENCFF310ZIS/@@download/ENCFF310ZIS.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF401LTK bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF807MUK 581299426 ENCODE Processing Pipeline 38048145e66ce63f7e9eb889e6f835d2 https://www.encodeproject.org/files/ENCFF401LTK/@@download/ENCFF401LTK.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF311CJK bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF807MUK 340589424 ENCODE Processing Pipeline 9405e20e9a0ca9e5f313300b0bdcde8d https://www.encodeproject.org/files/ENCFF311CJK/@@download/ENCFF311CJK.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF448FSM bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF807MUK 1076389205 ENCODE Processing Pipeline f468c96fe93f93560bd8de62c2c6ef1e https://www.encodeproject.org/files/ENCFF448FSM/@@download/ENCFF448FSM.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF800DLO bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF807MUK 465654843 ENCODE Processing Pipeline 9d77563737166da7a7c9e2ccf22fd823 https://www.encodeproject.org/files/ENCFF800DLO/@@download/ENCFF800DLO.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF092ZWW bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 327016245 ENCODE Processing Pipeline b6d2bfebb0f7dea84bee203678092029 https://www.encodeproject.org/files/ENCFF092ZWW/@@download/ENCFF092ZWW.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF916YVI bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 366642757 ENCODE Processing Pipeline 33e1d20d32fcc70acecef3a0ff3d9e8c https://www.encodeproject.org/files/ENCFF916YVI/@@download/ENCFF916YVI.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF821OON bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 414493589 ENCODE Processing Pipeline 45f54939ec75d1809fc8472d82da40aa https://www.encodeproject.org/files/ENCFF821OON/@@download/ENCFF821OON.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF646BYO bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 447336137 ENCODE Processing Pipeline 9ddc7345e52e73823ae4e3051e5a34cb https://www.encodeproject.org/files/ENCFF646BYO/@@download/ENCFF646BYO.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF564SXM bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 226089649 ENCODE Processing Pipeline db6daacc9f706c138062e26e0f498d43 https://www.encodeproject.org/files/ENCFF564SXM/@@download/ENCFF564SXM.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF216MIT bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 180915789 ENCODE Processing Pipeline 46d2db492203cfc4d4ec295cd8b984bf https://www.encodeproject.org/files/ENCFF216MIT/@@download/ENCFF216MIT.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF104UCF bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 3264851 ENCODE Processing Pipeline 4a09e046119b52143964c55b73e10caa https://www.encodeproject.org/files/ENCFF104UCF/@@download/ENCFF104UCF.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF919VUH bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 4726848 ENCODE Processing Pipeline eb17606be848d53688b8343fb22be510 https://www.encodeproject.org/files/ENCFF919VUH/@@download/ENCFF919VUH.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF861OTX bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF104UCF 6743274 ENCODE Processing Pipeline 04a5283a5452276160668db67c640a4f https://www.encodeproject.org/files/ENCFF861OTX/@@download/ENCFF861OTX.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF218RRQ bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF919VUH 11080610 ENCODE Processing Pipeline 870d53302c2199037ed16b8e5c578944 https://www.encodeproject.org/files/ENCFF218RRQ/@@download/ENCFF218RRQ.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF618UTS bed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF104UCF, ENCFF215WDM, ENCFF419RSJ, ENCFF919VUH 610915 ENCODE Processing Pipeline 965bd5eae31bc762b487e026a562db94 https://www.encodeproject.org/files/ENCFF618UTS/@@download/ENCFF618UTS.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF215WDM bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 4399797 ENCODE Processing Pipeline e6a241eb0e61aeebff1f545877b732c8 https://www.encodeproject.org/files/ENCFF215WDM/@@download/ENCFF215WDM.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF330PYA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF618UTS 946806 ENCODE Processing Pipeline 4486c5402c973b9f488907f836db76fc https://www.encodeproject.org/files/ENCFF330PYA/@@download/ENCFF330PYA.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF624PCO bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF215WDM 10524340 ENCODE Processing Pipeline 93a566903b255f5dd664a0a5b3329640 https://www.encodeproject.org/files/ENCFF624PCO/@@download/ENCFF624PCO.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF654EGO bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF104UCF, ENCFF215WDM, ENCFF419RSJ, ENCFF919VUH 685326 ENCODE Processing Pipeline 8217bae3a169d4081aa3697ad7b5786d https://www.encodeproject.org/files/ENCFF654EGO/@@download/ENCFF654EGO.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF867VSB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF654EGO 1319442 ENCODE Processing Pipeline 7aaf570fd287ec2167b8a00457da4a23 https://www.encodeproject.org/files/ENCFF867VSB/@@download/ENCFF867VSB.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF550QIX bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 180533142 ENCODE Processing Pipeline a8310cde1fd2cf272ddd9bcce7382eae https://www.encodeproject.org/files/ENCFF550QIX/@@download/ENCFF550QIX.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF756HRE bed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF436OWU, ENCFF510UIU, ENCFF601GLM 611088 ENCODE Processing Pipeline 96cfd0fdf4679678cc42c814594c6c39 https://www.encodeproject.org/files/ENCFF756HRE/@@download/ENCFF756HRE.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF312ZNA bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 341316341 ENCODE Processing Pipeline 493540e4ea84767aef9cea76a99145dd https://www.encodeproject.org/files/ENCFF312ZNA/@@download/ENCFF312ZNA.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF523HMT bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 381037194 ENCODE Processing Pipeline c474655407124541515aa9248d6cbc41 https://www.encodeproject.org/files/ENCFF523HMT/@@download/ENCFF523HMT.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF416LQD bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 472488228 ENCODE Processing Pipeline a680137948d9b4c21b57afc8bbd1d04d https://www.encodeproject.org/files/ENCFF416LQD/@@download/ENCFF416LQD.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF582DAX bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 227357584 ENCODE Processing Pipeline 1f80d212cca1d6281701fd488b3cd560 https://www.encodeproject.org/files/ENCFF582DAX/@@download/ENCFF582DAX.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF567EGK bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 365022624 ENCODE Processing Pipeline 0d42354e6a29a32a1b848ce67c3756b7 https://www.encodeproject.org/files/ENCFF567EGK/@@download/ENCFF567EGK.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF510UIU bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 3261181 ENCODE Processing Pipeline cf4faead6c6f80b199f1a699ec3d60c0 https://www.encodeproject.org/files/ENCFF510UIU/@@download/ENCFF510UIU.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF436OWU bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 4403785 ENCODE Processing Pipeline a895db5e73e2acf0e8b09774027faccb https://www.encodeproject.org/files/ENCFF436OWU/@@download/ENCFF436OWU.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF601GLM bed narrowPeak peaks and background as input for IDR ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 4726086 ENCODE Processing Pipeline e687493a5491e033ea4e19851cecc5b1 https://www.encodeproject.org/files/ENCFF601GLM/@@download/ENCFF601GLM.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF493CET bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF510UIU 6746754 ENCODE Processing Pipeline 1dd793a4aacf93b3e9bef077a7eee7bd https://www.encodeproject.org/files/ENCFF493CET/@@download/ENCFF493CET.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF532QXH bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF436OWU 10531907 ENCODE Processing Pipeline 8f478daaf379f6659a076e2dbcf9fe3f https://www.encodeproject.org/files/ENCFF532QXH/@@download/ENCFF532QXH.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF170SVS bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF601GLM 11080106 ENCODE Processing Pipeline cae3a013430f7f4cb4830731dc7442ff https://www.encodeproject.org/files/ENCFF170SVS/@@download/ENCFF170SVS.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF891UAP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF756HRE 946618 ENCODE Processing Pipeline 1cf7d82c46c1a0fc5dfa1429f471f347 https://www.encodeproject.org/files/ENCFF891UAP/@@download/ENCFF891UAP.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF753RGL bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF436OWU, ENCFF510UIU, ENCFF601GLM 688110 ENCODE Processing Pipeline c297cd9f39ea9fa917cc79632b77b70d https://www.encodeproject.org/files/ENCFF753RGL/@@download/ENCFF753RGL.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF584PFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF753RGL 1322975 ENCODE Processing Pipeline ca0795c98d007ce58a7a9274d93dfa8b https://www.encodeproject.org/files/ENCFF584PFC/@@download/ENCFF584PFC.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000OFN bigBed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TZE 499650 Richard Myers, HAIB dd17189f7b6141217a05429df8c2fa40 https://www.encodeproject.org/files/ENCFF000OFN/@@download/ENCFF000OFN.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFO bigBed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TZF 772425 Richard Myers, HAIB d7d650f926a4fd0f248d0c89b9f9b91b https://www.encodeproject.org/files/ENCFF000OFO/@@download/ENCFF000OFO.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFP bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000OFY 1529810193 Richard Myers, HAIB f939075d32b0d1f36de201ccc52b0c4f https://www.encodeproject.org/files/ENCFF000OFP/@@download/ENCFF000OFP.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFQ bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000OGA 1781221680 Richard Myers, HAIB 30962ce2ea184403d150d6b18f11237a https://www.encodeproject.org/files/ENCFF000OFQ/@@download/ENCFF000OFQ.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFR bigWig raw signal ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 19863642 Richard Myers, HAIB ceae92cdf36e872df10ee66ff5e9e67e https://www.encodeproject.org/files/ENCFF000OFR/@@download/ENCFF000OFR.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OFS bigWig raw signal ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 23386396 Richard Myers, HAIB e7fd6d9622e39f53e2ef61df0a7b54ba https://www.encodeproject.org/files/ENCFF000OFS/@@download/ENCFF000OFS.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OFY fastq reads ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1475102617 Richard Myers, HAIB 1d07180af1e2d540e5f2e503dfa484e8 https://www.encodeproject.org/files/ENCFF000OFY/@@download/ENCFF000OFY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OGA fastq reads ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1700877146 Richard Myers, HAIB 77e752e4533524e29ee48aa9a201a2b7 https://www.encodeproject.org/files/ENCFF000OGA/@@download/ENCFF000OGA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TZE bed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 305172 Richard Myers, HAIB e4a357d83aa9b3dd2f92e76c42adbd7c https://www.encodeproject.org/files/ENCFF001TZE/@@download/ENCFF001TZE.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TZF bed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 435677 Richard Myers, HAIB fed86e3a4083d8f32d3505f5d5244960 https://www.encodeproject.org/files/ENCFF001TZF/@@download/ENCFF001TZF.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHX bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 165707 ENCODE Consortium Analysis Working Group 8d8a5ea1ca26b64a1b032cd30579244c https://www.encodeproject.org/files/ENCFF002CHX/@@download/ENCFF002CHX.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF676WWI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHX 409950 ENCODE Consortium ca27211da4388ea6ee1fa2398606f437 https://www.encodeproject.org/files/ENCFF676WWI/@@download/ENCFF676WWI.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF865OWT bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF643CGH 1672484869 ENCODE Processing Pipeline ec212774cc96ae82460d6f72ce31a1c1 https://www.encodeproject.org/files/ENCFF865OWT/@@download/ENCFF865OWT.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF179ZBY bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF643CGH 1091053782 ENCODE Processing Pipeline b39be2f3af1fd76d82341e639ed1e02f https://www.encodeproject.org/files/ENCFF179ZBY/@@download/ENCFF179ZBY.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF870IWV bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF643CGH 1175725360 ENCODE Processing Pipeline 3c2ea19dd5d560e1160acb8d207d301f https://www.encodeproject.org/files/ENCFF870IWV/@@download/ENCFF870IWV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF163IQH bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF643CGH 1899014076 ENCODE Processing Pipeline f0fbb27776d323b9fe9283e598fb9a2d https://www.encodeproject.org/files/ENCFF163IQH/@@download/ENCFF163IQH.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF983VNV bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF807MUK 1668986240 ENCODE Processing Pipeline b85140eabc72433400d02a57d029adbb https://www.encodeproject.org/files/ENCFF983VNV/@@download/ENCFF983VNV.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF892ZFJ bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF807MUK 1085999808 ENCODE Processing Pipeline 32f213cd5ddf531a18aa2b54cebcea02 https://www.encodeproject.org/files/ENCFF892ZFJ/@@download/ENCFF892ZFJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF023ZGL bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF807MUK 1896707307 ENCODE Processing Pipeline 10c24627805b9ee7c0ba7941d68d4e8f https://www.encodeproject.org/files/ENCFF023ZGL/@@download/ENCFF023ZGL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF462CSN bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF807MUK 1168513242 ENCODE Processing Pipeline ab766b1abc296a52e71558462f44ac47 https://www.encodeproject.org/files/ENCFF462CSN/@@download/ENCFF462CSN.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF431SQV bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 627054583 ENCODE Processing Pipeline 23347ba91b0ff31febc22fc374e9594e https://www.encodeproject.org/files/ENCFF431SQV/@@download/ENCFF431SQV.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF317YAC bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 524005840 ENCODE Processing Pipeline c8e1ec4e608c208b06d6443a1ce57d78 https://www.encodeproject.org/files/ENCFF317YAC/@@download/ENCFF317YAC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF290UJM bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 705368585 ENCODE Processing Pipeline 851e4d291d373079f88615ae70d203a7 https://www.encodeproject.org/files/ENCFF290UJM/@@download/ENCFF290UJM.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF829YPR bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 836302500 ENCODE Processing Pipeline ab998d9f152efacb6923cf55712ac41e https://www.encodeproject.org/files/ENCFF829YPR/@@download/ENCFF829YPR.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF675ICH bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 529204556 ENCODE Processing Pipeline fba571fa4384dd56647b172ae94ad55a https://www.encodeproject.org/files/ENCFF675ICH/@@download/ENCFF675ICH.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF113XQT bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 925600755 ENCODE Processing Pipeline 3770311572beaa3ae8045af822182a75 https://www.encodeproject.org/files/ENCFF113XQT/@@download/ENCFF113XQT.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF772NOR bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 6796170 ENCODE Processing Pipeline d2c09786f4febb2bd8af1b893b845f09 https://www.encodeproject.org/files/ENCFF772NOR/@@download/ENCFF772NOR.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF447TGK bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 7014992 ENCODE Processing Pipeline 09b4f31bf7a2f51d844e195cf75df42d https://www.encodeproject.org/files/ENCFF447TGK/@@download/ENCFF447TGK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF876BBG bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 7170912 ENCODE Processing Pipeline d97eeaacf574aefd267cc1dd71a32ea3 https://www.encodeproject.org/files/ENCFF876BBG/@@download/ENCFF876BBG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF702GZD bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF772NOR 12721660 ENCODE Processing Pipeline 56cea29360a2ae8c6a2c2ecc33ac5065 https://www.encodeproject.org/files/ENCFF702GZD/@@download/ENCFF702GZD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF425MQO bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF447TGK 12448238 ENCODE Processing Pipeline e648e5d77932dcc6d9bab4d9fdda9dfa https://www.encodeproject.org/files/ENCFF425MQO/@@download/ENCFF425MQO.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF451ZQR bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF876BBG 12434593 ENCODE Processing Pipeline 096f61235eee95248e8912b4a559ac47 https://www.encodeproject.org/files/ENCFF451ZQR/@@download/ENCFF451ZQR.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF752VNM bed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF447TGK, ENCFF772NOR, ENCFF876BBG 182296 ENCODE Processing Pipeline 6b91d7841a3ca75afed517f864206555 https://www.encodeproject.org/files/ENCFF752VNM/@@download/ENCFF752VNM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF421TDT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF752VNM 431287 ENCODE Processing Pipeline bd3253fff191dab307243b1af13a3554 https://www.encodeproject.org/files/ENCFF421TDT/@@download/ENCFF421TDT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF492YMU bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF447TGK, ENCFF772NOR, ENCFF876BBG 198904 ENCODE Processing Pipeline c5f6d5dee5e25313d5e5dd85604244b8 https://www.encodeproject.org/files/ENCFF492YMU/@@download/ENCFF492YMU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF397BLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF492YMU 458441 ENCODE Processing Pipeline 7d8e48f2dfe99fec2585a40b7a3904ba https://www.encodeproject.org/files/ENCFF397BLP/@@download/ENCFF397BLP.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF886PJI bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 828308769 ENCODE Processing Pipeline 83e6bcec44eb722f8dbf96ebd411c7d6 https://www.encodeproject.org/files/ENCFF886PJI/@@download/ENCFF886PJI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF249CGE bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 914420872 ENCODE Processing Pipeline 40b6687d2b42c0582a8e0162d864c4bb https://www.encodeproject.org/files/ENCFF249CGE/@@download/ENCFF249CGE.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF005VFG bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 7173148 ENCODE Processing Pipeline 0af39374cfd99c45f9f723692eea7a56 https://www.encodeproject.org/files/ENCFF005VFG/@@download/ENCFF005VFG.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF682UTO bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG 12426698 ENCODE Processing Pipeline c1b4a9682c3b8d31cce9ce1c9b616cec https://www.encodeproject.org/files/ENCFF682UTO/@@download/ENCFF682UTO.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF676THH bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 564850563 ENCODE Processing Pipeline d48c473a38beeca5d5cb58c5a259ef1e https://www.encodeproject.org/files/ENCFF676THH/@@download/ENCFF676THH.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF550LCM bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 533326844 ENCODE Processing Pipeline e8820879f5da34e8bb24b93f5b8a6b7e https://www.encodeproject.org/files/ENCFF550LCM/@@download/ENCFF550LCM.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF893UWT bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 604642948 ENCODE Processing Pipeline e290b9d0c7ebec47a72043cd120beb5f https://www.encodeproject.org/files/ENCFF893UWT/@@download/ENCFF893UWT.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF165EPX bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 533336890 ENCODE Processing Pipeline 1ccf0b2bb380f72cc6d155c88abb6fc1 https://www.encodeproject.org/files/ENCFF165EPX/@@download/ENCFF165EPX.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF658OVR bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 6761108 ENCODE Processing Pipeline 094aa95fad0e96ce186525c094c1bba3 https://www.encodeproject.org/files/ENCFF658OVR/@@download/ENCFF658OVR.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF731HQN bed narrowPeak peaks and background as input for IDR ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 6955701 ENCODE Processing Pipeline 93e266a55bbb3dfdeceee8bcb5f48802 https://www.encodeproject.org/files/ENCFF731HQN/@@download/ENCFF731HQN.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF021WLR bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF658OVR 12662477 ENCODE Processing Pipeline 0d7767488a8f4e0e7ef832b4ca2fe32d https://www.encodeproject.org/files/ENCFF021WLR/@@download/ENCFF021WLR.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF677TSC bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF731HQN 12369044 ENCODE Processing Pipeline cd15c6bc785a15716557af26dbf4a8bb https://www.encodeproject.org/files/ENCFF677TSC/@@download/ENCFF677TSC.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF470LBM bed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG, ENCFF419RSJ, ENCFF658OVR, ENCFF731HQN 184799 ENCODE Processing Pipeline 5e3b2904bab9ac704c457af5ec041bf1 https://www.encodeproject.org/files/ENCFF470LBM/@@download/ENCFF470LBM.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF298JKI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF470LBM 431772 ENCODE Processing Pipeline 8247058088ee4733c9fdb15be14de82e https://www.encodeproject.org/files/ENCFF298JKI/@@download/ENCFF298JKI.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF383YEA bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG, ENCFF419RSJ, ENCFF658OVR, ENCFF731HQN 200490 ENCODE Processing Pipeline 94884b6e6021e82de169b91916d54ba2 https://www.encodeproject.org/files/ENCFF383YEA/@@download/ENCFF383YEA.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF308KDS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF383YEA 457158 ENCODE Processing Pipeline 244da00df81f49a2fb36e8a46f09a517 https://www.encodeproject.org/files/ENCFF308KDS/@@download/ENCFF308KDS.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF375SAG fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF253EIS 2038758996 Michael Snyder, Stanford a4a8b65ff47e8cce2eb3214badc9b017 https://www.encodeproject.org/files/ENCFF375SAG/@@download/ENCFF375SAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF253EIS fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF375SAG 2058739501 Michael Snyder, Stanford 64acad6ee8a77d7c86b76e460a511dd5 https://www.encodeproject.org/files/ENCFF253EIS/@@download/ENCFF253EIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF181GHZ fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF421JAE 3067221392 Michael Snyder, Stanford f7d076800fe8d14e83c53023d06f3372 https://www.encodeproject.org/files/ENCFF181GHZ/@@download/ENCFF181GHZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF421JAE fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF181GHZ 3572500908 Michael Snyder, Stanford e9f7510edc25411886ccb63050873dd7 https://www.encodeproject.org/files/ENCFF421JAE/@@download/ENCFF421JAE.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF474JIF bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF807MUK 6580963465 ENCODE Processing Pipeline 4b44c3c27133fc1f688d8fa503faf13c https://www.encodeproject.org/files/ENCFF474JIF/@@download/ENCFF474JIF.bam hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF814JNQ bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF643CGH 6588590368 ENCODE Processing Pipeline e76ef85119f546c310e2d41f3ee4c9a3 https://www.encodeproject.org/files/ENCFF814JNQ/@@download/ENCFF814JNQ.bam GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF628YUZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF807MUK 5000664165 ENCODE Processing Pipeline 380d9699d359e99c553707ddd501b36a https://www.encodeproject.org/files/ENCFF628YUZ/@@download/ENCFF628YUZ.bam hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF993SEE bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF643CGH 5009944284 ENCODE Processing Pipeline 2bc3d8a8bb30f982394035f627db7f90 https://www.encodeproject.org/files/ENCFF993SEE/@@download/ENCFF993SEE.bam GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF834KGR bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 1914816338 ENCODE Processing Pipeline 40f5918627c5b34df802fad37578e686 https://www.encodeproject.org/files/ENCFF834KGR/@@download/ENCFF834KGR.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF956TJM bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 1858365465 ENCODE Processing Pipeline 69924bf0733196397041b3e4f551617d https://www.encodeproject.org/files/ENCFF956TJM/@@download/ENCFF956TJM.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF334WDB bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 1831342859 ENCODE Processing Pipeline ca14f5d8dcecfdcaddb55bc3a474e061 https://www.encodeproject.org/files/ENCFF334WDB/@@download/ENCFF334WDB.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF227JUZ bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 1915000561 ENCODE Processing Pipeline 06144be8dd66bdfd089dbf95e57017cb https://www.encodeproject.org/files/ENCFF227JUZ/@@download/ENCFF227JUZ.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF214BGG bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF222SAV 11297759 ENCODE Processing Pipeline af9b7087552ec3fe85d77c8be7ef517b https://www.encodeproject.org/files/ENCFF214BGG/@@download/ENCFF214BGG.bigBed hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF222SAV bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 6730092 ENCODE Processing Pipeline 1f32b4b191ac76066f3a6217e6ed7df4 https://www.encodeproject.org/files/ENCFF222SAV/@@download/ENCFF222SAV.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF308STS fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 1 ENCFF312YAG 2724184530 Michael Snyder, Stanford 56c04ef39d0a619759a5b8e094866150 https://www.encodeproject.org/files/ENCFF308STS/@@download/ENCFF308STS.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF312YAG fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 2 ENCFF308STS 2955286650 Michael Snyder, Stanford 99862e48bf5193c3cab6e2fa306ee0c3 https://www.encodeproject.org/files/ENCFF312YAG/@@download/ENCFF312YAG.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF801CAV bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF643CGH 5515988732 ENCODE Processing Pipeline ea9bc0914043093e16daded086ee225e https://www.encodeproject.org/files/ENCFF801CAV/@@download/ENCFF801CAV.bam GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF580MYI bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF807MUK 4480170587 ENCODE Processing Pipeline 58f243eb55a109cd8bf6f1dc1a772edf https://www.encodeproject.org/files/ENCFF580MYI/@@download/ENCFF580MYI.bam hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF460ZUI bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF807MUK 5509648158 ENCODE Processing Pipeline 9071cbf4f40f4fb0e709581fec023d8f https://www.encodeproject.org/files/ENCFF460ZUI/@@download/ENCFF460ZUI.bam hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF717ZWZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF643CGH 4486967653 ENCODE Processing Pipeline bb2cad33d73053a9a27ef52b4315a8b4 https://www.encodeproject.org/files/ENCFF717ZWZ/@@download/ENCFF717ZWZ.bam GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF049NLE bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF815CIT 11803805 ENCODE Processing Pipeline 50ce4435108cdfa3fba0d7ec8e760940 https://www.encodeproject.org/files/ENCFF049NLE/@@download/ENCFF049NLE.bigBed GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF085HIP bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 2425103234 ENCODE Processing Pipeline 0fa9578f363fbcd1223ad780f104a3a4 https://www.encodeproject.org/files/ENCFF085HIP/@@download/ENCFF085HIP.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF034KQB bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF543PLI 11633404 ENCODE Processing Pipeline 72f402dbc2cc3eca1dbc8e20fa5472f6 https://www.encodeproject.org/files/ENCFF034KQB/@@download/ENCFF034KQB.bigBed GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF867KAO bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF059KWF 11784306 ENCODE Processing Pipeline e3439e09fb1d255999cd84eccc4a9a0a https://www.encodeproject.org/files/ENCFF867KAO/@@download/ENCFF867KAO.bigBed hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF963TPR bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 1017491585 ENCODE Processing Pipeline c3a6f1c898d3a2338100ee519127180c https://www.encodeproject.org/files/ENCFF963TPR/@@download/ENCFF963TPR.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF232CUP bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 1366867570 ENCODE Processing Pipeline dbb5bba2542c59918fe9eb5b97f524b4 https://www.encodeproject.org/files/ENCFF232CUP/@@download/ENCFF232CUP.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF543PLI bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 7189047 ENCODE Processing Pipeline 57f8d4649601a68f7081e6f85c927afc https://www.encodeproject.org/files/ENCFF543PLI/@@download/ENCFF543PLI.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF777DVJ bed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF419RSJ, ENCFF543PLI, ENCFF815CIT, ENCFF865INZ 4883 ENCODE Processing Pipeline c7cc25ad5d0a9958ba90a0a60d9eda4d https://www.encodeproject.org/files/ENCFF777DVJ/@@download/ENCFF777DVJ.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF828LKL bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF133NZE 11614881 ENCODE Processing Pipeline eb27d75e371da5e28054284b285e880a https://www.encodeproject.org/files/ENCFF828LKL/@@download/ENCFF828LKL.bigBed hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF791ZIC bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 2469444853 ENCODE Processing Pipeline 68b7131789de344134deb23c160cafa1 https://www.encodeproject.org/files/ENCFF791ZIC/@@download/ENCFF791ZIC.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF778TKQ bed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF419RSJ, ENCFF543PLI, ENCFF815CIT, ENCFF865INZ 3271 ENCODE Processing Pipeline 7b135e3121fe4d28784e8df1f82bd18c https://www.encodeproject.org/files/ENCFF778TKQ/@@download/ENCFF778TKQ.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF368DYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF778TKQ 81853 ENCODE Processing Pipeline 658513ad9b85133f5521a903d0c876ce https://www.encodeproject.org/files/ENCFF368DYQ/@@download/ENCFF368DYQ.bigBed GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF478OOS bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 2331708144 ENCODE Processing Pipeline e76aa6921a032babacabfc3f6b7d7266 https://www.encodeproject.org/files/ENCFF478OOS/@@download/ENCFF478OOS.bigWig GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF836EKZ bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF865INZ 11292946 ENCODE Processing Pipeline b9fb0bfb5e096bc72178e7e743ce7eb4 https://www.encodeproject.org/files/ENCFF836EKZ/@@download/ENCFF836EKZ.bigBed GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF065QOM bed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF059KWF, ENCFF133NZE, ENCFF222SAV 4790 ENCODE Processing Pipeline 233897215cc75699bd30006f3cd5c2d2 https://www.encodeproject.org/files/ENCFF065QOM/@@download/ENCFF065QOM.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF907OBQ bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 2242313095 ENCODE Processing Pipeline 9b09976326e38cea4314bb69bc9c5f09 https://www.encodeproject.org/files/ENCFF907OBQ/@@download/ENCFF907OBQ.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF547XTZ bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 1322901311 ENCODE Processing Pipeline 1ea455242d74da1e0c85649888f23bd6 https://www.encodeproject.org/files/ENCFF547XTZ/@@download/ENCFF547XTZ.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF865INZ bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 6769604 ENCODE Processing Pipeline 56a7b7711f0bc9730911a810aa0c5b1d https://www.encodeproject.org/files/ENCFF865INZ/@@download/ENCFF865INZ.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF463ROM bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 1340697750 ENCODE Processing Pipeline 5484d756d6fdafe8f4e4cafb73199c90 https://www.encodeproject.org/files/ENCFF463ROM/@@download/ENCFF463ROM.bigWig hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF815CIT bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 5612845 ENCODE Processing Pipeline c3e02ddc6f15652b1fbd3fd506ea8807 https://www.encodeproject.org/files/ENCFF815CIT/@@download/ENCFF815CIT.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF059KWF bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 5612210 ENCODE Processing Pipeline d7e2ec297d8b73942dc863fe0804717c https://www.encodeproject.org/files/ENCFF059KWF/@@download/ENCFF059KWF.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF191OAE bigBed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF777DVJ 79844 ENCODE Processing Pipeline 41d68323e35ac05e7febe2618a0c77b9 https://www.encodeproject.org/files/ENCFF191OAE/@@download/ENCFF191OAE.bigBed GRCh38 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF133NZE bed narrowPeak peaks and background as input for IDR ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 7183220 ENCODE Processing Pipeline da69d67f311f1c8a8a7fea3c71a501a0 https://www.encodeproject.org/files/ENCFF133NZE/@@download/ENCFF133NZE.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF744AFG bed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF059KWF, ENCFF133NZE, ENCFF222SAV 3056 ENCODE Processing Pipeline 39e520392695c8e9b4d7c7e3b7870fda https://www.encodeproject.org/files/ENCFF744AFG/@@download/ENCFF744AFG.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF335PYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF744AFG 80025 ENCODE Processing Pipeline 5f5d488171537efaaff1b43d52687fdd https://www.encodeproject.org/files/ENCFF335PYJ/@@download/ENCFF335PYJ.bigBed hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF754CST bigBed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF065QOM 60588 ENCODE Processing Pipeline b3c4297ffacce288e835593146f88b6b https://www.encodeproject.org/files/ENCFF754CST/@@download/ENCFF754CST.bigBed hg19 released borderline replicate concordance, mild to moderate bottlenecking, inconsistent platforms experiment not submitted to GEO ENCFF000WCJ bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WCO 133370281 Sherman Weissman, Yale b0f751708adbdee8cf0f6a2b44662129 https://www.encodeproject.org/files/ENCFF000WCJ/@@download/ENCFF000WCJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCK bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WCU 159927609 Sherman Weissman, Yale 891ca9871128c2587420673385518298 https://www.encodeproject.org/files/ENCFF000WCK/@@download/ENCFF000WCK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCL bigBed narrowPeak peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFC 76792 Sherman Weissman, Yale 05152e9531c2b7d9714df97cd88823e0 https://www.encodeproject.org/files/ENCFF000WCL/@@download/ENCFF000WCL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCM bigWig signal ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 276401556 Sherman Weissman, Yale 2f61e437109877f29572a6301d4e4eb7 https://www.encodeproject.org/files/ENCFF000WCM/@@download/ENCFF000WCM.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WCO fastq reads ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 110619624 Sherman Weissman, Yale a2b3be3ed878ba602c3a5b36aa6df5fe https://www.encodeproject.org/files/ENCFF000WCO/@@download/ENCFF000WCO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF000WCU fastq reads ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 125106381 Sherman Weissman, Yale fd4810431b7594cd2e071014d54b0a86 https://www.encodeproject.org/files/ENCFF000WCU/@@download/ENCFF000WCU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF001VFC bed narrowPeak peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 3005 Sherman Weissman, Yale 55303d7ae28fe2d1d75e69513270194f https://www.encodeproject.org/files/ENCFF001VFC/@@download/ENCFF001VFC.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CPJ bed narrowPeak optimal idr thresholded peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 4779 ENCODE Consortium Analysis Working Group 712b70baad14c99c3a3b0acacf502ae7 https://www.encodeproject.org/files/ENCFF002CPJ/@@download/ENCFF002CPJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF430FNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPJ 86276 ENCODE Consortium 0a0051e97fb2c29a853eafdada853e03 https://www.encodeproject.org/files/ENCFF430FNU/@@download/ENCFF430FNU.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000OAO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OBB 1291463709 Richard Myers, HAIB dbdc8e6f75c73c64ccac21113c418b9a https://www.encodeproject.org/files/ENCFF000OAO/@@download/ENCFF000OAO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAP bigBed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYI 1616649 Richard Myers, HAIB 92aa549f0ea1f3533d3b8e61918390f2 https://www.encodeproject.org/files/ENCFF000OAP/@@download/ENCFF000OAP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAQ bigBed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYJ 1714943 Richard Myers, HAIB e2b9a81ac74b96d42e887d63b984fba1 https://www.encodeproject.org/files/ENCFF000OAQ/@@download/ENCFF000OAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAR bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBE 1304539164 Richard Myers, HAIB 4349753a4fcaa55782ece69642933bcd https://www.encodeproject.org/files/ENCFF000OAR/@@download/ENCFF000OAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAT bigWig raw signal ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 119320345 Richard Myers, HAIB 0259bbc36bcc0424779084adccd69da5 https://www.encodeproject.org/files/ENCFF000OAT/@@download/ENCFF000OAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OAV bigWig raw signal ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 129039927 Richard Myers, HAIB c82dfa76a8d96a4534d4487857286c3f https://www.encodeproject.org/files/ENCFF000OAV/@@download/ENCFF000OAV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OBB fastq reads ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1888750897 Richard Myers, HAIB 5b77b7903fd3b50615629e1eca254e25 https://www.encodeproject.org/files/ENCFF000OBB/@@download/ENCFF000OBB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released low read length, inconsistent control read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OBE fastq reads ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2174113476 Richard Myers, HAIB 8ebc26278136df2f2d43683e5849e626 https://www.encodeproject.org/files/ENCFF000OBE/@@download/ENCFF000OBE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released inconsistent control read length, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001TYI bed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 847298 Richard Myers, HAIB feb44a14128795975f3153b197ec79af https://www.encodeproject.org/files/ENCFF001TYI/@@download/ENCFF001TYI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TYJ bed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 886866 Richard Myers, HAIB 43e06571a01b40fe48958f157bee3915 https://www.encodeproject.org/files/ENCFF001TYJ/@@download/ENCFF001TYJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CHO bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 590379 ENCODE Consortium Analysis Working Group 88dffe9237451b6aecab755ae94462fd https://www.encodeproject.org/files/ENCFF002CHO/@@download/ENCFF002CHO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF558QBE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHO 1443272 ENCODE Consortium d298e09f01cd36f16ec8e0de2c997e29 https://www.encodeproject.org/files/ENCFF558QBE/@@download/ENCFF558QBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF020RXG bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF807MUK 2159896569 ENCODE Processing Pipeline 9a0c9d6a16eedea7fc94ebf5bf72a3b4 https://www.encodeproject.org/files/ENCFF020RXG/@@download/ENCFF020RXG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF668XIT bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF643CGH 1917176049 ENCODE Processing Pipeline 791acec050a3a163a47941b1671e3584 https://www.encodeproject.org/files/ENCFF668XIT/@@download/ENCFF668XIT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF726CVN bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF807MUK 1913984884 ENCODE Processing Pipeline c7ce074b972201ec6a2292031d643d62 https://www.encodeproject.org/files/ENCFF726CVN/@@download/ENCFF726CVN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865BUP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF807MUK 730991573 ENCODE Processing Pipeline ea451bf9500b1027f5336de0adf709f7 https://www.encodeproject.org/files/ENCFF865BUP/@@download/ENCFF865BUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF418NDO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF643CGH 734328978 ENCODE Processing Pipeline 24ff006ae8b04a65da3529f958c75f12 https://www.encodeproject.org/files/ENCFF418NDO/@@download/ENCFF418NDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591BQK bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF807MUK 752226113 ENCODE Processing Pipeline e5ae3519b6a9f8488912e3e192b6c7f6 https://www.encodeproject.org/files/ENCFF591BQK/@@download/ENCFF591BQK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF795DHE bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF643CGH 2163490981 ENCODE Processing Pipeline f209dc588a699f33b81325f92743143c https://www.encodeproject.org/files/ENCFF795DHE/@@download/ENCFF795DHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF036AWP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF643CGH 755210701 ENCODE Processing Pipeline cbb8035725332d14c6dfd204116a12e3 https://www.encodeproject.org/files/ENCFF036AWP/@@download/ENCFF036AWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF917WUN bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 588015247 ENCODE Processing Pipeline 1258829cfe1298a7f1f288deb982f388 https://www.encodeproject.org/files/ENCFF917WUN/@@download/ENCFF917WUN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF297FPN bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 622151934 ENCODE Processing Pipeline d9de2394514dcdc495ec1c6dda995897 https://www.encodeproject.org/files/ENCFF297FPN/@@download/ENCFF297FPN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF949LAB bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 709321749 ENCODE Processing Pipeline 440daf455231100de08d07de24f69db9 https://www.encodeproject.org/files/ENCFF949LAB/@@download/ENCFF949LAB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF644WID bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 345471803 ENCODE Processing Pipeline 30ce04dcb0a255d2c467c67eef495624 https://www.encodeproject.org/files/ENCFF644WID/@@download/ENCFF644WID.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF593AJA bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 360733904 ENCODE Processing Pipeline d05aa19c748edea25324f31f6deea27e https://www.encodeproject.org/files/ENCFF593AJA/@@download/ENCFF593AJA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF368HBX bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 557809721 ENCODE Processing Pipeline 77e7108e74b5bee5b0b73a226ea87a96 https://www.encodeproject.org/files/ENCFF368HBX/@@download/ENCFF368HBX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF879SHG bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 6758714 ENCODE Processing Pipeline 5e93c7295b5b593f91a509b6fe23f11b https://www.encodeproject.org/files/ENCFF879SHG/@@download/ENCFF879SHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591LRS bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 6659552 ENCODE Processing Pipeline 8c8c2d8412f808ae8d170201a02edb5d https://www.encodeproject.org/files/ENCFF591LRS/@@download/ENCFF591LRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF630QJJ bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 6990535 ENCODE Processing Pipeline b1bdc3fff65041bb6cc7077f95f3d74c https://www.encodeproject.org/files/ENCFF630QJJ/@@download/ENCFF630QJJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF939BPS bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF879SHG 11650298 ENCODE Processing Pipeline a0fb0686d578a33303706d72a67eaff2 https://www.encodeproject.org/files/ENCFF939BPS/@@download/ENCFF939BPS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF639GMF bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF591LRS 11743673 ENCODE Processing Pipeline 34f401ccc2567c2181c664065564ae80 https://www.encodeproject.org/files/ENCFF639GMF/@@download/ENCFF639GMF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF773BJM bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF630QJJ 11683828 ENCODE Processing Pipeline 0b4184ba92ab5df218d3771d265a067e https://www.encodeproject.org/files/ENCFF773BJM/@@download/ENCFF773BJM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF587YZD bed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF591LRS, ENCFF630QJJ, ENCFF879SHG 770947 ENCODE Processing Pipeline 2a62f1a3226d5ff0a91a3469fb6ab8e6 https://www.encodeproject.org/files/ENCFF587YZD/@@download/ENCFF587YZD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF719TKY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587YZD 1791763 ENCODE Processing Pipeline d88c6dc938191b1fb60ba91aaa945565 https://www.encodeproject.org/files/ENCFF719TKY/@@download/ENCFF719TKY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF120VUT bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF591LRS, ENCFF630QJJ, ENCFF879SHG 820085 ENCODE Processing Pipeline bca31e848a128f562b9082c678c3ad04 https://www.encodeproject.org/files/ENCFF120VUT/@@download/ENCFF120VUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF937DJK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF120VUT 1885804 ENCODE Processing Pipeline 9656dabb1ba82ef1e8b5e8999682a64e https://www.encodeproject.org/files/ENCFF937DJK/@@download/ENCFF937DJK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF133ISK bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 530896721 ENCODE Processing Pipeline 5900df25e364650747ab6c68c25c215d https://www.encodeproject.org/files/ENCFF133ISK/@@download/ENCFF133ISK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770SHV bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 553017377 ENCODE Processing Pipeline b9ac3f60b8d2097215969def817a0f53 https://www.encodeproject.org/files/ENCFF770SHV/@@download/ENCFF770SHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF776ZUU bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 701914670 ENCODE Processing Pipeline 7fa36fbdaa720c065afc759ed4bb5612 https://www.encodeproject.org/files/ENCFF776ZUU/@@download/ENCFF776ZUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF355BAY bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 353686926 ENCODE Processing Pipeline f9faf2710b5ef9fdc8ecfd7e5eb176eb https://www.encodeproject.org/files/ENCFF355BAY/@@download/ENCFF355BAY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF340BYJ bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 362699813 ENCODE Processing Pipeline 7bacebcbe4c99cc34b743b83e162a866 https://www.encodeproject.org/files/ENCFF340BYJ/@@download/ENCFF340BYJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF600UCV bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 558154629 ENCODE Processing Pipeline d8ce1cf028ad690150d7391ba192a432 https://www.encodeproject.org/files/ENCFF600UCV/@@download/ENCFF600UCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF409RXS bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 7062241 ENCODE Processing Pipeline 3de8be550eeaa27cf8e56e84f5a746e6 https://www.encodeproject.org/files/ENCFF409RXS/@@download/ENCFF409RXS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF786LVK bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 7054015 ENCODE Processing Pipeline 6f366cd52ed9a55f10dbd823edd03cd8 https://www.encodeproject.org/files/ENCFF786LVK/@@download/ENCFF786LVK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF987SUJ bed narrowPeak peaks and background as input for IDR ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 7316535 ENCODE Processing Pipeline c94b26f936b215913251a9368624d896 https://www.encodeproject.org/files/ENCFF987SUJ/@@download/ENCFF987SUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF030ITY bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF409RXS 11995700 ENCODE Processing Pipeline 22d0cb1e0c34aa3ae2fd8556e8d252cf https://www.encodeproject.org/files/ENCFF030ITY/@@download/ENCFF030ITY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF755HUJ bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF786LVK 12191978 ENCODE Processing Pipeline 622b48b875b880b2fac3b31ad46a6d10 https://www.encodeproject.org/files/ENCFF755HUJ/@@download/ENCFF755HUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF986OZR bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF987SUJ 12058517 ENCODE Processing Pipeline aeffc40459564716ac8ae931cc3d858c https://www.encodeproject.org/files/ENCFF986OZR/@@download/ENCFF986OZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF794VYB bed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409RXS, ENCFF419RSJ, ENCFF786LVK, ENCFF987SUJ 835693 ENCODE Processing Pipeline 5333557c51cf9ead1a16cde22274d734 https://www.encodeproject.org/files/ENCFF794VYB/@@download/ENCFF794VYB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF211AJX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF794VYB 1902071 ENCODE Processing Pipeline c2f28507b5fad6bd5a0efc5795cc0357 https://www.encodeproject.org/files/ENCFF211AJX/@@download/ENCFF211AJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF455ZLJ bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409RXS, ENCFF419RSJ, ENCFF786LVK, ENCFF987SUJ 889824 ENCODE Processing Pipeline 09d7e00ece3d0d68c1485b38d2c7fe64 https://www.encodeproject.org/files/ENCFF455ZLJ/@@download/ENCFF455ZLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF977WLL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF455ZLJ 2004850 ENCODE Processing Pipeline c31f069b0643f5e7b6f628f50cb5495b https://www.encodeproject.org/files/ENCFF977WLL/@@download/ENCFF977WLL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF853XMX bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF807MUK 1597367370 ENCODE Processing Pipeline a30b3cdb71f8d842bf9cd010264fdcb2 https://www.encodeproject.org/files/ENCFF853XMX/@@download/ENCFF853XMX.bam hg19 released low read length, low read depth ENCFF433DBU bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF807MUK, ENCFF818LOF 965419270 ENCODE Processing Pipeline 982d8bdfe2a02e660411f0617b6fd570 https://www.encodeproject.org/files/ENCFF433DBU/@@download/ENCFF433DBU.bam hg19 released low read length, low read depth ENCFF818LOF fastq reads ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 1 36 single-ended 798399785 Michael Snyder, Stanford 78f086d82958bd5e1c2cada3a35a1f11 SRA:SRR5111456 https://www.encodeproject.org/files/ENCFF818LOF/@@download/ENCFF818LOF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, low read depth ENCFF079VLS fastq reads ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 1 36 single-ended 1334051574 Michael Snyder, Stanford 9d9cbc1877353d0659b3a2c10caee521 SRA:SRR5111455 https://www.encodeproject.org/files/ENCFF079VLS/@@download/ENCFF079VLS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, low read depth ENCFF634ELX bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF807MUK, ENCFF818LOF 613962324 ENCODE Processing Pipeline cb83ce5e763a74e401d877d14b87bba5 https://www.encodeproject.org/files/ENCFF634ELX/@@download/ENCFF634ELX.bam hg19 released low read length, low read depth ENCFF464GJM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF807MUK 1130557828 ENCODE Processing Pipeline a3409f564b1044a95b71eba44771f46d https://www.encodeproject.org/files/ENCFF464GJM/@@download/ENCFF464GJM.bam hg19 released low read length, low read depth ENCFF751CNI bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 539234048 ENCODE Processing Pipeline a78d26c8b8e60aa702c70fa9f30455ac https://www.encodeproject.org/files/ENCFF751CNI/@@download/ENCFF751CNI.bigWig hg19 released low read length, low read depth ENCFF314ENT bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 607218575 ENCODE Processing Pipeline 7e6d7b32f34fedaf4cd3736c41b0a28c https://www.encodeproject.org/files/ENCFF314ENT/@@download/ENCFF314ENT.bigWig hg19 released low read length, low read depth ENCFF451RMK bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 913043823 ENCODE Processing Pipeline 962e3b7708a67f375e9be09a04bdffed https://www.encodeproject.org/files/ENCFF451RMK/@@download/ENCFF451RMK.bigWig hg19 released low read length, low read depth ENCFF939JWJ bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 551505921 ENCODE Processing Pipeline 18e0139a3b4744cb43081a29d49d01ab https://www.encodeproject.org/files/ENCFF939JWJ/@@download/ENCFF939JWJ.bigWig hg19 released low read length, low read depth ENCFF339SKT bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 358584424 ENCODE Processing Pipeline f40c95e9e382344421fe5d8381c13d2c https://www.encodeproject.org/files/ENCFF339SKT/@@download/ENCFF339SKT.bigWig hg19 released low read length, low read depth ENCFF183UMP bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 1020435897 ENCODE Processing Pipeline 4c5d96b9d0d5e4bdf478cc2e918d5bf5 https://www.encodeproject.org/files/ENCFF183UMP/@@download/ENCFF183UMP.bigWig hg19 released low read length, low read depth ENCFF932DYK bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 4436318 ENCODE Processing Pipeline d2c17667ce64ae8b302a304bc09b6b67 https://www.encodeproject.org/files/ENCFF932DYK/@@download/ENCFF932DYK.bed.gz hg19 released low read length, low read depth ENCFF697XCB bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF932DYK 10894231 ENCODE Processing Pipeline dad2b447b9215cde8a0bd58b6dcd6c3c https://www.encodeproject.org/files/ENCFF697XCB/@@download/ENCFF697XCB.bigBed hg19 released low read length, low read depth ENCFF140CXA bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 5298512 ENCODE Processing Pipeline bcf9237be2e295e2ebeb2c55425db377 https://www.encodeproject.org/files/ENCFF140CXA/@@download/ENCFF140CXA.bed.gz hg19 released low read length, low read depth ENCFF045PNJ bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 2141851 ENCODE Processing Pipeline ec4e1819c48903e5afbf4ba4e5bf609a https://www.encodeproject.org/files/ENCFF045PNJ/@@download/ENCFF045PNJ.bed.gz hg19 released low read length, low read depth ENCFF110UKE bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF140CXA 11414361 ENCODE Processing Pipeline 1467b11313df17c12c0036b82a779eb8 https://www.encodeproject.org/files/ENCFF110UKE/@@download/ENCFF110UKE.bigBed hg19 released low read length, low read depth ENCFF919JAN bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF045PNJ 4110221 ENCODE Processing Pipeline fe0c3885d837dc008717a9a2151ceae8 https://www.encodeproject.org/files/ENCFF919JAN/@@download/ENCFF919JAN.bigBed hg19 released low read length, low read depth ENCFF267KMU bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF643CGH 1603341574 ENCODE Processing Pipeline 71a67d8f25e210d22af98875eb3e6867 https://www.encodeproject.org/files/ENCFF267KMU/@@download/ENCFF267KMU.bam GRCh38 released low read length, low read depth ENCFF878WNM bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF643CGH, ENCFF818LOF 969873012 ENCODE Processing Pipeline 2af49b6c95102c9cf6497a181194f0e5 https://www.encodeproject.org/files/ENCFF878WNM/@@download/ENCFF878WNM.bam GRCh38 released low read length, low read depth ENCFF917WPY bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF643CGH, ENCFF818LOF 614082774 ENCODE Processing Pipeline d9a6392599d1acf80a3d0f63780226f7 https://www.encodeproject.org/files/ENCFF917WPY/@@download/ENCFF917WPY.bam GRCh38 released low read length, low read depth ENCFF923TDM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF643CGH 1133337509 ENCODE Processing Pipeline a8ead3cbd08baa9f992b21740271089b https://www.encodeproject.org/files/ENCFF923TDM/@@download/ENCFF923TDM.bam GRCh38 released low read length, low read depth ENCFF244CPF bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 406553973 ENCODE Processing Pipeline 1735e4ea5a8b73235d7cdb5013518964 https://www.encodeproject.org/files/ENCFF244CPF/@@download/ENCFF244CPF.bigWig GRCh38 released low read length, low read depth ENCFF229FNP bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 547891064 ENCODE Processing Pipeline 962f7a2a920fccc50ad0b3dde62e68bf https://www.encodeproject.org/files/ENCFF229FNP/@@download/ENCFF229FNP.bigWig GRCh38 released low read length, low read depth ENCFF881RMX bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 880755275 ENCODE Processing Pipeline 7ed30846ec33bcce63d53745bd69ab84 https://www.encodeproject.org/files/ENCFF881RMX/@@download/ENCFF881RMX.bigWig GRCh38 released low read length, low read depth ENCFF708UPU bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 349604396 ENCODE Processing Pipeline 08a42d58d603e8d3abf2abc6a0df0d2a https://www.encodeproject.org/files/ENCFF708UPU/@@download/ENCFF708UPU.bigWig GRCh38 released low read length, low read depth ENCFF300LFU bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 568320726 ENCODE Processing Pipeline e5da23929cd9741ad3e415903ff8d1a6 https://www.encodeproject.org/files/ENCFF300LFU/@@download/ENCFF300LFU.bigWig GRCh38 released low read length, low read depth ENCFF401YZO bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 1042440778 ENCODE Processing Pipeline 94a0ca1ebe17bb89c61c07b62f09b9aa https://www.encodeproject.org/files/ENCFF401YZO/@@download/ENCFF401YZO.bigWig GRCh38 released low read length, low read depth ENCFF875FAP bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF481KGJ 11352230 ENCODE Processing Pipeline 073c2df3675416aaea0618a8733773ec https://www.encodeproject.org/files/ENCFF875FAP/@@download/ENCFF875FAP.bigBed GRCh38 released low read length, low read depth ENCFF595BGA bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF139LGS 10693766 ENCODE Processing Pipeline 2ad609d356518f5bf72f0e1f300f1056 https://www.encodeproject.org/files/ENCFF595BGA/@@download/ENCFF595BGA.bigBed GRCh38 released low read length, low read depth ENCFF188GCC bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF926DVU 4204291 ENCODE Processing Pipeline 9a35b0aab591cf6acd4ff6cf614412fd https://www.encodeproject.org/files/ENCFF188GCC/@@download/ENCFF188GCC.bigBed GRCh38 released low read length, low read depth ENCFF139LGS bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 4224327 ENCODE Processing Pipeline 46f1af108ccb9df0a8d244c06ff5ab3b https://www.encodeproject.org/files/ENCFF139LGS/@@download/ENCFF139LGS.bed.gz GRCh38 released low read length, low read depth ENCFF481KGJ bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 5074705 ENCODE Processing Pipeline 9b2133bfe7c44c8ae809fa5bf036a953 https://www.encodeproject.org/files/ENCFF481KGJ/@@download/ENCFF481KGJ.bed.gz GRCh38 released low read length, low read depth ENCFF926DVU bed narrowPeak peaks and background as input for IDR ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 2128545 ENCODE Processing Pipeline 00a4a80b98df7a2c37c2d08ea1062e0b https://www.encodeproject.org/files/ENCFF926DVU/@@download/ENCFF926DVU.bed.gz GRCh38 released low read length, low read depth ENCFF243GOG bed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF139LGS, ENCFF419RSJ, ENCFF481KGJ, ENCFF926DVU 28198 ENCODE Processing Pipeline bc338bff1e47a9486b87ed7aef91a259 https://www.encodeproject.org/files/ENCFF243GOG/@@download/ENCFF243GOG.bed.gz GRCh38 released low read length, low read depth ENCFF163JYV bed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF139LGS, ENCFF419RSJ, ENCFF481KGJ, ENCFF926DVU 24424 ENCODE Processing Pipeline 9fa7397320152b8a7820a8bc6bb4c673 https://www.encodeproject.org/files/ENCFF163JYV/@@download/ENCFF163JYV.bed.gz GRCh38 released low read length, low read depth ENCFF873PUQ bigBed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF163JYV 96751 ENCODE Processing Pipeline 92d1d3db086996ff327a215718969376 https://www.encodeproject.org/files/ENCFF873PUQ/@@download/ENCFF873PUQ.bigBed GRCh38 released low read length, low read depth ENCFF141ZMD bigBed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF243GOG 103155 ENCODE Processing Pipeline 6d29ff8c73629af7eb8530634b2f0c05 https://www.encodeproject.org/files/ENCFF141ZMD/@@download/ENCFF141ZMD.bigBed GRCh38 released low read length, low read depth ENCFF235AEB bed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF001TDO, ENCFF045PNJ, ENCFF140CXA, ENCFF932DYK 17728 ENCODE Processing Pipeline c5a6e7792464222ef9a78822c79405e6 https://www.encodeproject.org/files/ENCFF235AEB/@@download/ENCFF235AEB.bed.gz hg19 released low read length, low read depth ENCFF920HDC bed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF001TDO, ENCFF045PNJ, ENCFF140CXA, ENCFF932DYK 20648 ENCODE Processing Pipeline e61bfccca114033dcdd022214dce007f https://www.encodeproject.org/files/ENCFF920HDC/@@download/ENCFF920HDC.bed.gz hg19 released low read length, low read depth ENCFF042EYI bigBed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF920HDC 76622 ENCODE Processing Pipeline 25533cef1170858f8481426bbc91cb38 https://www.encodeproject.org/files/ENCFF042EYI/@@download/ENCFF042EYI.bigBed hg19 released low read length, low read depth ENCFF438QAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF235AEB 72615 ENCODE Processing Pipeline 680af46a62a05e0fa4d72b49eeaebd7a https://www.encodeproject.org/files/ENCFF438QAQ/@@download/ENCFF438QAQ.bigBed hg19 released low read length, low read depth ENCFF769OUG bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF708BOT, ENCFF807MUK 5486994260 ENCODE Processing Pipeline d35a2f7e9270e9d6f76f037dca39f655 https://www.encodeproject.org/files/ENCFF769OUG/@@download/ENCFF769OUG.bam hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF644ETK bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF807MUK 5153285916 ENCODE Processing Pipeline e52de33e3725c7e91eddf2472f77257d https://www.encodeproject.org/files/ENCFF644ETK/@@download/ENCFF644ETK.bam hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF708BOT fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF025TUY 2433068845 Michael Snyder, Stanford e6875ce3bd7f8fced540d3f4e24ce65f SRA:SRR5111256 https://www.encodeproject.org/files/ENCFF708BOT/@@download/ENCFF708BOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released antibody characterized with exemption, borderline replicate concordance ENCFF025TUY fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF708BOT 2509245871 Michael Snyder, Stanford f1c8d42d5635d456c6247c4ab5f91535 SRA:SRR5111256 https://www.encodeproject.org/files/ENCFF025TUY/@@download/ENCFF025TUY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released antibody characterized with exemption, borderline replicate concordance ENCFF379KSR fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF441WIT 2277843351 Michael Snyder, Stanford 1ea598d3096e981402402be64300095d SRA:SRR5111255 https://www.encodeproject.org/files/ENCFF379KSR/@@download/ENCFF379KSR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released antibody characterized with exemption, borderline replicate concordance ENCFF441WIT fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF379KSR 2350310808 Michael Snyder, Stanford e7a9d936eb5a38ba07c13754e1f02e1a SRA:SRR5111255 https://www.encodeproject.org/files/ENCFF441WIT/@@download/ENCFF441WIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released antibody characterized with exemption, borderline replicate concordance ENCFF959KSA bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF025TUY, ENCFF708BOT, ENCFF807MUK 4651934731 ENCODE Processing Pipeline 80dbf56e81bfa8a07b70efa1345bd6a6 https://www.encodeproject.org/files/ENCFF959KSA/@@download/ENCFF959KSA.bam hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF404VIO bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF379KSR, ENCFF441WIT, ENCFF807MUK 4330864677 ENCODE Processing Pipeline f055d79c105759e0b19f6ead66343556 https://www.encodeproject.org/files/ENCFF404VIO/@@download/ENCFF404VIO.bam hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF512UCA bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 1228361433 ENCODE Processing Pipeline 70db4514d3782c256d0fb32b5a5bb613 https://www.encodeproject.org/files/ENCFF512UCA/@@download/ENCFF512UCA.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF271DMN bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 1202888655 ENCODE Processing Pipeline c69a9c958913d4bf421439e6b2cf1fc9 https://www.encodeproject.org/files/ENCFF271DMN/@@download/ENCFF271DMN.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF186IHF bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 992907008 ENCODE Processing Pipeline fd37b7051f40b321f981a48c7b5533ae https://www.encodeproject.org/files/ENCFF186IHF/@@download/ENCFF186IHF.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF635KGM bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 2039473455 ENCODE Processing Pipeline 536a241bdd9f68f6ba8fd0916f890721 https://www.encodeproject.org/files/ENCFF635KGM/@@download/ENCFF635KGM.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF019TVN bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 6167163 ENCODE Processing Pipeline 3ea79eef8b09498fa98e859900b7a667 https://www.encodeproject.org/files/ENCFF019TVN/@@download/ENCFF019TVN.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF955KPL bigBed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF608IGE 127139 ENCODE Processing Pipeline f0f5bdac3082e35a81e7c382e2d4b33b https://www.encodeproject.org/files/ENCFF955KPL/@@download/ENCFF955KPL.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched status ENCFF026GPY bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 2153451629 ENCODE Processing Pipeline a0c5bc9619bfec328f69a8c5aad97808 https://www.encodeproject.org/files/ENCFF026GPY/@@download/ENCFF026GPY.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF015RED bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 6222237 ENCODE Processing Pipeline 7ccc53751ec7dd1c471fe8c24e31311a https://www.encodeproject.org/files/ENCFF015RED/@@download/ENCFF015RED.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF009QEI bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 7148025 ENCODE Processing Pipeline 0350614108e084a913ba2103902554b5 https://www.encodeproject.org/files/ENCFF009QEI/@@download/ENCFF009QEI.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF377OUN bigBed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF345OJQ 86174 ENCODE Processing Pipeline 5421d9d142e96d78741c3d7abbc26307 https://www.encodeproject.org/files/ENCFF377OUN/@@download/ENCFF377OUN.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched status ENCFF582VHS bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 1141620802 ENCODE Processing Pipeline 00a9ed7e9f362dc4e96c84c71f91a84f https://www.encodeproject.org/files/ENCFF582VHS/@@download/ENCFF582VHS.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF714BZH bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF015RED 11340006 ENCODE Processing Pipeline dc7171df8e4e601cf0bcfefb7c82dd9c https://www.encodeproject.org/files/ENCFF714BZH/@@download/ENCFF714BZH.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF344OJI bed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF009QEI, ENCFF015RED, ENCFF019TVN 44947 ENCODE Processing Pipeline 8f76cd4eaefe9893f5ed8affc6e9a2ad https://www.encodeproject.org/files/ENCFF344OJI/@@download/ENCFF344OJI.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF240QHO bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF019TVN 11414396 ENCODE Processing Pipeline 86da601eaf959f299d29522ea4a97cd6 https://www.encodeproject.org/files/ENCFF240QHO/@@download/ENCFF240QHO.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF693TRI bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF009QEI 11291235 ENCODE Processing Pipeline f665c383add636ca73a0d7f720ce6a4e https://www.encodeproject.org/files/ENCFF693TRI/@@download/ENCFF693TRI.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF506ECO bed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF009QEI, ENCFF015RED, ENCFF019TVN 18616 ENCODE Processing Pipeline 13364c0c17adef54726c027f852ab309 https://www.encodeproject.org/files/ENCFF506ECO/@@download/ENCFF506ECO.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance ENCFF675OUX bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF643CGH 5157169086 ENCODE Processing Pipeline bc5bd732aec252ca59ee646bcbf7055a https://www.encodeproject.org/files/ENCFF675OUX/@@download/ENCFF675OUX.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF922RKY bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF643CGH, ENCFF708BOT 5490803640 ENCODE Processing Pipeline 3927d5d4ededde96eadc0135cd0b7ea0 https://www.encodeproject.org/files/ENCFF922RKY/@@download/ENCFF922RKY.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF053VFZ bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF643CGH 4337112041 ENCODE Processing Pipeline b7c07f813eb938cf9efd6cdec8fbbe15 https://www.encodeproject.org/files/ENCFF053VFZ/@@download/ENCFF053VFZ.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF629WCK bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF643CGH, ENCFF708BOT 4657991981 ENCODE Processing Pipeline 5f5381c2b38e3e71832de0b71b74562e https://www.encodeproject.org/files/ENCFF629WCK/@@download/ENCFF629WCK.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF754CDS bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 974822007 ENCODE Processing Pipeline 27568feaa32beab3f4d3dccc832c0d2b https://www.encodeproject.org/files/ENCFF754CDS/@@download/ENCFF754CDS.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF739GBD bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 942136244 ENCODE Processing Pipeline ae42ab46c3308a321e058a39a7dab021 https://www.encodeproject.org/files/ENCFF739GBD/@@download/ENCFF739GBD.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF901ZYU bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 2156869788 ENCODE Processing Pipeline 10797341a557b602944a7184caa65871 https://www.encodeproject.org/files/ENCFF901ZYU/@@download/ENCFF901ZYU.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF603UBS bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 1146906358 ENCODE Processing Pipeline 3969609e7ed52e09a9aa75ad4af0d9db https://www.encodeproject.org/files/ENCFF603UBS/@@download/ENCFF603UBS.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF322QQG bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 1155729359 ENCODE Processing Pipeline ca8ad70151e63f1a70eddad48ecdb030 https://www.encodeproject.org/files/ENCFF322QQG/@@download/ENCFF322QQG.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF764KSL bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 2147528018 ENCODE Processing Pipeline fc8959794f6c7eb3fd2fdaa03e3b3a35 https://www.encodeproject.org/files/ENCFF764KSL/@@download/ENCFF764KSL.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF825KZX bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF487HYJ 11299213 ENCODE Processing Pipeline f19c957843ea15ecf594f970953835af https://www.encodeproject.org/files/ENCFF825KZX/@@download/ENCFF825KZX.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF259DUR bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF699SFJ 11338038 ENCODE Processing Pipeline 4b219e9f684e786eddda3bb3b8a84eae https://www.encodeproject.org/files/ENCFF259DUR/@@download/ENCFF259DUR.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF699SFJ bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 6054821 ENCODE Processing Pipeline 7a57fdeea94de916903b28d762a73966 https://www.encodeproject.org/files/ENCFF699SFJ/@@download/ENCFF699SFJ.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF088PZZ bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 5956408 ENCODE Processing Pipeline 8b6668903e59d57581d746761078cb65 https://www.encodeproject.org/files/ENCFF088PZZ/@@download/ENCFF088PZZ.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF487HYJ bed narrowPeak peaks and background as input for IDR ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 7094057 ENCODE Processing Pipeline f9c961856e44c0f7bc42b40549287798 https://www.encodeproject.org/files/ENCFF487HYJ/@@download/ENCFF487HYJ.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF821YKR bigBed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF699GCM 86957 ENCODE Processing Pipeline ed34afa4de7f2c32ff737991fb0790a2 https://www.encodeproject.org/files/ENCFF821YKR/@@download/ENCFF821YKR.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF906FWW bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF088PZZ 11405150 ENCODE Processing Pipeline 45d6d21aeab60058e515d0c95bbcb565 https://www.encodeproject.org/files/ENCFF906FWW/@@download/ENCFF906FWW.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF699GCM bed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF088PZZ, ENCFF419RSJ, ENCFF487HYJ, ENCFF699SFJ 18700 ENCODE Processing Pipeline dafe80ab8dfd946b3c16a5e13d98d317 https://www.encodeproject.org/files/ENCFF699GCM/@@download/ENCFF699GCM.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF500RBO bed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF088PZZ, ENCFF419RSJ, ENCFF487HYJ, ENCFF699SFJ 44183 ENCODE Processing Pipeline 9fe3473912e0bddc4a036473555613ba https://www.encodeproject.org/files/ENCFF500RBO/@@download/ENCFF500RBO.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF551ECC bigBed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF500RBO 127430 ENCODE Processing Pipeline 6fdd5386850f8a8a8d423ecc6932d85c https://www.encodeproject.org/files/ENCFF551ECC/@@download/ENCFF551ECC.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance ENCFF000WCD bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WCS 346993327 Michael Snyder, Stanford 2c55b6b92555f0a1e03855e811d5fa4e https://www.encodeproject.org/files/ENCFF000WCD/@@download/ENCFF000WCD.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WCE bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFD 2479988 Michael Snyder, Stanford 39cf911e8eb944a2f68627b373520125 https://www.encodeproject.org/files/ENCFF000WCE/@@download/ENCFF000WCE.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WCF bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WCR 339692845 Michael Snyder, Stanford 2323218579d55421356780a7f0511b94 https://www.encodeproject.org/files/ENCFF000WCF/@@download/ENCFF000WCF.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WCG bigWig signal ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 283564516 Michael Snyder, Stanford 1236f63e87dd436f4a9177da341fa24b https://www.encodeproject.org/files/ENCFF000WCG/@@download/ENCFF000WCG.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000WCR fastq reads ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 885643130 Michael Snyder, Stanford ae64ae7abbb3a0e74c71ed1bb7c45abd https://www.encodeproject.org/files/ENCFF000WCR/@@download/ENCFF000WCR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released moderate library complexity, low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WCS fastq reads ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 615918418 Michael Snyder, Stanford 4ebdc94f635b6671e4d07c4cc894dfed https://www.encodeproject.org/files/ENCFF000WCS/@@download/ENCFF000WCS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released moderate library complexity, inconsistent control read length, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001VFD bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1296331 Michael Snyder, Stanford 1cb406eb16ab7f5477fbf240ef4313df https://www.encodeproject.org/files/ENCFF001VFD/@@download/ENCFF001VFD.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CPI bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 214705 ENCODE Consortium Analysis Working Group f1588e9f5654438edefe7c3f56208975 https://www.encodeproject.org/files/ENCFF002CPI/@@download/ENCFF002CPI.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF703KJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPI 600498 ENCODE Consortium 62a3b723d073f88ee65bc2beacabe230 https://www.encodeproject.org/files/ENCFF703KJS/@@download/ENCFF703KJS.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF486RNZ bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF643CGH 689233919 ENCODE Processing Pipeline aa2e8ee3d40b62aede524ce38a0591e2 https://www.encodeproject.org/files/ENCFF486RNZ/@@download/ENCFF486RNZ.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF634VSH bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF643CGH 435519372 ENCODE Processing Pipeline e018b502f48e83be7f1bf6d77833a14b https://www.encodeproject.org/files/ENCFF634VSH/@@download/ENCFF634VSH.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF048NRD bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF643CGH 409018113 ENCODE Processing Pipeline 1a73604df77c86aec83885b3865bc38c https://www.encodeproject.org/files/ENCFF048NRD/@@download/ENCFF048NRD.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF546LAR bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF643CGH 896392525 ENCODE Processing Pipeline c46a6da78ee1bab221d5c528da454254 https://www.encodeproject.org/files/ENCFF546LAR/@@download/ENCFF546LAR.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF015AEA bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF807MUK 687232526 ENCODE Processing Pipeline 86514ff2988659aadff34a1ad4e0ab5f https://www.encodeproject.org/files/ENCFF015AEA/@@download/ENCFF015AEA.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF898ZMA bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF807MUK 434930583 ENCODE Processing Pipeline 63f1ade0ed4be6cd931b18af0051c98e https://www.encodeproject.org/files/ENCFF898ZMA/@@download/ENCFF898ZMA.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF625MLW bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF807MUK 894162393 ENCODE Processing Pipeline 20d601dd077eb3fce6eb242c519d4471 https://www.encodeproject.org/files/ENCFF625MLW/@@download/ENCFF625MLW.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF785LYN bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF807MUK 406376259 ENCODE Processing Pipeline df043a90bfc841dc79a34cd8a8984edb https://www.encodeproject.org/files/ENCFF785LYN/@@download/ENCFF785LYN.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF940CQB bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 143848711 ENCODE Processing Pipeline af1872104ef646ae0ae111800d239edf https://www.encodeproject.org/files/ENCFF940CQB/@@download/ENCFF940CQB.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF574RRB bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 5189428 ENCODE Processing Pipeline 6b8c83bba58d4be8d759522b6ad65ed2 https://www.encodeproject.org/files/ENCFF574RRB/@@download/ENCFF574RRB.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF707YNJ bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 6218903 ENCODE Processing Pipeline 6e12d74695c1715c45fe1cc82a7ab515 https://www.encodeproject.org/files/ENCFF707YNJ/@@download/ENCFF707YNJ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF641KLQ bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 82816697 ENCODE Processing Pipeline 6082cd05c483eb4b34941633719c72cc https://www.encodeproject.org/files/ENCFF641KLQ/@@download/ENCFF641KLQ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF462SJO bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 188612448 ENCODE Processing Pipeline 2f2229b3e29cc26f1a90ee36541c21ec https://www.encodeproject.org/files/ENCFF462SJO/@@download/ENCFF462SJO.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF521QIX bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 181672544 ENCODE Processing Pipeline 1728002ff5d59c5b872d7a26e8d452ca https://www.encodeproject.org/files/ENCFF521QIX/@@download/ENCFF521QIX.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF156MYB bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 170928457 ENCODE Processing Pipeline 6588bac926cc96668536112dc68d01db https://www.encodeproject.org/files/ENCFF156MYB/@@download/ENCFF156MYB.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF031RUV bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 322837923 ENCODE Processing Pipeline 733587aac39a04783f67d7b8c1c8f960 https://www.encodeproject.org/files/ENCFF031RUV/@@download/ENCFF031RUV.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF998HJZ bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 5176576 ENCODE Processing Pipeline a2d99ba2a87a699516c2a539ff405c66 https://www.encodeproject.org/files/ENCFF998HJZ/@@download/ENCFF998HJZ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF630NFM bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF574RRB, ENCFF707YNJ, ENCFF998HJZ 276969 ENCODE Processing Pipeline 3b995de8b5a72e9d927f21ec57194d6c https://www.encodeproject.org/files/ENCFF630NFM/@@download/ENCFF630NFM.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF776YJF bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF574RRB 12321647 ENCODE Processing Pipeline 0a134eff5fdc93f2968e6b1a9ad8831e https://www.encodeproject.org/files/ENCFF776YJF/@@download/ENCFF776YJF.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF838MWP bed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF574RRB, ENCFF707YNJ, ENCFF998HJZ 202172 ENCODE Processing Pipeline 1d5e843d35bc289f4e42170828207fa3 https://www.encodeproject.org/files/ENCFF838MWP/@@download/ENCFF838MWP.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF739UET bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF630NFM 641167 ENCODE Processing Pipeline eb1b466029a7f0beae1b9d8c9596dda1 https://www.encodeproject.org/files/ENCFF739UET/@@download/ENCFF739UET.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF264HZR bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF707YNJ 12450464 ENCODE Processing Pipeline 7dce1b579a2eeb2f1857578bb225725f https://www.encodeproject.org/files/ENCFF264HZR/@@download/ENCFF264HZR.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF654JPU bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF998HJZ 11983601 ENCODE Processing Pipeline 5f5f3855c10d73f86b895dc6bdd5e392 https://www.encodeproject.org/files/ENCFF654JPU/@@download/ENCFF654JPU.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF158UFB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF838MWP 510735 ENCODE Processing Pipeline 295200c1336e6bebe11a7775fd1e58b8 https://www.encodeproject.org/files/ENCFF158UFB/@@download/ENCFF158UFB.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF156EYN bed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZQP, ENCFF081TEE, ENCFF140RTC, ENCFF419RSJ 202670 ENCODE Processing Pipeline 544f183928e76915724a217390acf2a5 https://www.encodeproject.org/files/ENCFF156EYN/@@download/ENCFF156EYN.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF455TPZ bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 185308336 ENCODE Processing Pipeline 9ce3167678f4a08ef43e7c6e61ff6bc4 https://www.encodeproject.org/files/ENCFF455TPZ/@@download/ENCFF455TPZ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF740FMN bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF003ZQP 12368818 ENCODE Processing Pipeline 02411235067f34c341820ddf012c1fcf https://www.encodeproject.org/files/ENCFF740FMN/@@download/ENCFF740FMN.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF981AVZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF847DXY 644299 ENCODE Processing Pipeline bc379a9c0beaa8dc48b62970c1a25b91 https://www.encodeproject.org/files/ENCFF981AVZ/@@download/ENCFF981AVZ.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF355WRB bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 170867623 ENCODE Processing Pipeline 83e4d0bcecb0891cd90546a03d0950d2 https://www.encodeproject.org/files/ENCFF355WRB/@@download/ENCFF355WRB.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF086FEO bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 323029476 ENCODE Processing Pipeline e0d66cc7193332ff65ced1b22cf4d2cd https://www.encodeproject.org/files/ENCFF086FEO/@@download/ENCFF086FEO.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF003ZQP bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 5228691 ENCODE Processing Pipeline 02d0d22bfba5ecf8e953f59f63664560 https://www.encodeproject.org/files/ENCFF003ZQP/@@download/ENCFF003ZQP.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF928JKA bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF140RTC 11965837 ENCODE Processing Pipeline 9d1277b3bc3da716330bc21246bf3e32 https://www.encodeproject.org/files/ENCFF928JKA/@@download/ENCFF928JKA.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF847DXY bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZQP, ENCFF081TEE, ENCFF140RTC, ENCFF419RSJ 278182 ENCODE Processing Pipeline 50a6df14d58a424817063e12f2a4ce55 https://www.encodeproject.org/files/ENCFF847DXY/@@download/ENCFF847DXY.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF140RTC bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 5171543 ENCODE Processing Pipeline 2896c4b4db0eac7d336277c7bd816c06 https://www.encodeproject.org/files/ENCFF140RTC/@@download/ENCFF140RTC.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF901ZUM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156EYN 511743 ENCODE Processing Pipeline bf6ddbfcdc92358110fa783d9e8530fb https://www.encodeproject.org/files/ENCFF901ZUM/@@download/ENCFF901ZUM.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF730IJA bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 189656132 ENCODE Processing Pipeline ce20b9483eaa499174f892a5bf296b0d https://www.encodeproject.org/files/ENCFF730IJA/@@download/ENCFF730IJA.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF111ISP bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 83085346 ENCODE Processing Pipeline c5903cb870c511ea2d20f33afe704114 https://www.encodeproject.org/files/ENCFF111ISP/@@download/ENCFF111ISP.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF291KBU bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF081TEE 12440798 ENCODE Processing Pipeline 516e4d54362b0ad612aa2590f1926b71 https://www.encodeproject.org/files/ENCFF291KBU/@@download/ENCFF291KBU.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF958FIU bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 144972707 ENCODE Processing Pipeline 973975f72eba48c805b2e3838c83def4 https://www.encodeproject.org/files/ENCFF958FIU/@@download/ENCFF958FIU.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF081TEE bed narrowPeak peaks and background as input for IDR ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 6213095 ENCODE Processing Pipeline f4f2a452353d67797f57024e4b81ec6d https://www.encodeproject.org/files/ENCFF081TEE/@@download/ENCFF081TEE.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF429YLD bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF807MUK 7823425735 ENCODE Processing Pipeline a7aa8b45f2834c9f3194423455037e94 https://www.encodeproject.org/files/ENCFF429YLD/@@download/ENCFF429YLD.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF095HVO bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF807MUK 8862063059 ENCODE Processing Pipeline f127b4361406af226cae2d9d8d68a046 https://www.encodeproject.org/files/ENCFF095HVO/@@download/ENCFF095HVO.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF002DOL fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHS 4173922668 Michael Snyder, Stanford 8c941ca67137baf0ed8d34db395571eb SRA:SRR5111909 https://www.encodeproject.org/files/ENCFF002DOL/@@download/ENCFF002DOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released moderate library complexity, mild to moderate bottlenecking ENCFF002DON fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHQ 3787803202 Michael Snyder, Stanford 32016f7a9248e2a0a89936562d0bb322 SRA:SRR5111910 https://www.encodeproject.org/files/ENCFF002DON/@@download/ENCFF002DON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released moderate library complexity, mild to moderate bottlenecking ENCFF483SXX bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2231464263 ENCODE Processing Pipeline 92266a21d01d35dc1d1697ce0a8b310e https://www.encodeproject.org/files/ENCFF483SXX/@@download/ENCFF483SXX.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF002EHQ fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DON 3759298884 Michael Snyder, Stanford ee57310724b5225e7d89f76abd0d3db8 SRA:SRR5111910 https://www.encodeproject.org/files/ENCFF002EHQ/@@download/ENCFF002EHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released moderate library complexity, mild to moderate bottlenecking ENCFF002EHS fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOL 4203416462 Michael Snyder, Stanford 8334a61d9bea8cc842545c6a6807b3ee SRA:SRR5111909 https://www.encodeproject.org/files/ENCFF002EHS/@@download/ENCFF002EHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released moderate library complexity, mild to moderate bottlenecking ENCFF093OOO bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2453436231 ENCODE Processing Pipeline a24235c63ecd840dfeb4013dce0f4332 https://www.encodeproject.org/files/ENCFF093OOO/@@download/ENCFF093OOO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF087YWI bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6844032 ENCODE Processing Pipeline 56d51b07fede86d082c86048ddf73755 https://www.encodeproject.org/files/ENCFF087YWI/@@download/ENCFF087YWI.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF048WFQ bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6716942 ENCODE Processing Pipeline 3c3d50faed06c38edbebf2f7fa4630f3 https://www.encodeproject.org/files/ENCFF048WFQ/@@download/ENCFF048WFQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF314KVP bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 7250527 ENCODE Processing Pipeline 4d1c81159e1ff4f828d128616f213ad7 https://www.encodeproject.org/files/ENCFF314KVP/@@download/ENCFF314KVP.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF318LYZ bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF087YWI 13479036 ENCODE Processing Pipeline e2991b69ad22865f49699e3666ac0ac4 https://www.encodeproject.org/files/ENCFF318LYZ/@@download/ENCFF318LYZ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF599ACH bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF048WFQ 13328726 ENCODE Processing Pipeline 1f8d4a84abef05d9a2c4f57ef2780a26 https://www.encodeproject.org/files/ENCFF599ACH/@@download/ENCFF599ACH.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF045ZSN bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF314KVP 13344149 ENCODE Processing Pipeline ada4b017ac091a9e1cbee07be48e1718 https://www.encodeproject.org/files/ENCFF045ZSN/@@download/ENCFF045ZSN.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF159CAD bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF048WFQ, ENCFF087YWI, ENCFF314KVP 299778 ENCODE Processing Pipeline 09bbd7133eeabdb3f955f7336850aea7 https://www.encodeproject.org/files/ENCFF159CAD/@@download/ENCFF159CAD.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF770AQA bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF159CAD 634084 ENCODE Processing Pipeline 97a621d07de87aa4a6d6c0a404a682a7 https://www.encodeproject.org/files/ENCFF770AQA/@@download/ENCFF770AQA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF241GZK bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF048WFQ, ENCFF087YWI, ENCFF314KVP 458199 ENCODE Processing Pipeline bff9cb67e81f6eb1381e15b178bfc91a https://www.encodeproject.org/files/ENCFF241GZK/@@download/ENCFF241GZK.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF578IIN bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF241GZK 888344 ENCODE Processing Pipeline a0a2e05ffb2ac8ca98161a97cb329fdb https://www.encodeproject.org/files/ENCFF578IIN/@@download/ENCFF578IIN.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF722RLB bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF807MUK 6908267504 ENCODE Processing Pipeline bea52de030784d17eb49c7a16af64327 https://www.encodeproject.org/files/ENCFF722RLB/@@download/ENCFF722RLB.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF457KTM bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF807MUK 5397525423 ENCODE Processing Pipeline 6b149a520e587de422171c4134eef915 https://www.encodeproject.org/files/ENCFF457KTM/@@download/ENCFF457KTM.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF652JUE bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 1811326491 ENCODE Processing Pipeline 0d9e5b339e2b6b1ae2e7f785d72d4918 https://www.encodeproject.org/files/ENCFF652JUE/@@download/ENCFF652JUE.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF722YYU bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 1231504971 ENCODE Processing Pipeline 4da0457f32bc155f06d1bd7cad9aff22 https://www.encodeproject.org/files/ENCFF722YYU/@@download/ENCFF722YYU.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF122SUL bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 1970469812 ENCODE Processing Pipeline 4e3e3d394fd57fff7f8297066ccc13eb https://www.encodeproject.org/files/ENCFF122SUL/@@download/ENCFF122SUL.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF169IIH bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2220135104 ENCODE Processing Pipeline ad615efaa74d62fc2dde6326674cb9cd https://www.encodeproject.org/files/ENCFF169IIH/@@download/ENCFF169IIH.bigWig hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF963DFD bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 1330132767 ENCODE Processing Pipeline 7f894bd2cc3731ff3d8ff9e7452c94ab https://www.encodeproject.org/files/ENCFF963DFD/@@download/ENCFF963DFD.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF709NTS bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2441506777 ENCODE Processing Pipeline 4453dae238be6e55d624427a144840e6 https://www.encodeproject.org/files/ENCFF709NTS/@@download/ENCFF709NTS.bigWig hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF829ZUO bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6933097 ENCODE Processing Pipeline ef3eeda67e93024cd3191b4bc8360646 https://www.encodeproject.org/files/ENCFF829ZUO/@@download/ENCFF829ZUO.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF776OJT bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6814256 ENCODE Processing Pipeline cf846e6c8a2c833b88c07cc3c1965f38 https://www.encodeproject.org/files/ENCFF776OJT/@@download/ENCFF776OJT.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF907EOY bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF829ZUO 13479466 ENCODE Processing Pipeline 713fd696d5dd478cc6870a3474ef8e50 https://www.encodeproject.org/files/ENCFF907EOY/@@download/ENCFF907EOY.bigBed hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF195ZDI bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF776OJT 13332243 ENCODE Processing Pipeline 6435446fb0cddd4e3e7483591ff0494a https://www.encodeproject.org/files/ENCFF195ZDI/@@download/ENCFF195ZDI.bigBed hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF779SCE bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 7263599 ENCODE Processing Pipeline 18b4441d6aa37fbac19a92e22057d458 https://www.encodeproject.org/files/ENCFF779SCE/@@download/ENCFF779SCE.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF002GDS bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF779SCE 13342484 ENCODE Processing Pipeline f0ef0b13add7528f60a99d3324bc5c13 https://www.encodeproject.org/files/ENCFF002GDS/@@download/ENCFF002GDS.bigBed hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF369CTE bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF643CGH 7828444900 ENCODE Processing Pipeline c016a0e2c9d223ca18665c54c3753d60 https://www.encodeproject.org/files/ENCFF369CTE/@@download/ENCFF369CTE.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF670VGQ bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF643CGH 8871730513 ENCODE Processing Pipeline ff56ed8189d6b34b77ae2a803911e434 https://www.encodeproject.org/files/ENCFF670VGQ/@@download/ENCFF670VGQ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF559OOA bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF643CGH 5406770191 ENCODE Processing Pipeline 9c2b4d2eb32d314bb114135eadc5c981 https://www.encodeproject.org/files/ENCFF559OOA/@@download/ENCFF559OOA.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF083LQR bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF643CGH 6928381658 ENCODE Processing Pipeline af759fd50b2cd2d032bfe081138ebac2 https://www.encodeproject.org/files/ENCFF083LQR/@@download/ENCFF083LQR.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF974WGJ bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 1941693497 ENCODE Processing Pipeline ab00a60465be7f1020a5e800f802e72b https://www.encodeproject.org/files/ENCFF974WGJ/@@download/ENCFF974WGJ.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF035JFK bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 1119880418 ENCODE Processing Pipeline bc71213722912ca49ec4a95fd7e6a935 https://www.encodeproject.org/files/ENCFF035JFK/@@download/ENCFF035JFK.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF101ZYY bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 1900921526 ENCODE Processing Pipeline 59d17bb7e9ae44c189b9eb166f89c3e2 https://www.encodeproject.org/files/ENCFF101ZYY/@@download/ENCFF101ZYY.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF820WUN bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 1964264294 ENCODE Processing Pipeline 6ccbf43651cb63f65c64f88aa00a3f11 https://www.encodeproject.org/files/ENCFF820WUN/@@download/ENCFF820WUN.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF794BDD bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 1286032205 ENCODE Processing Pipeline 62cb980b0150aaa3e27e51530bf001bf https://www.encodeproject.org/files/ENCFF794BDD/@@download/ENCFF794BDD.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF876DXW bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 2442745490 ENCODE Processing Pipeline 0061a453f7cfd9e44a41104c3724eb8e https://www.encodeproject.org/files/ENCFF876DXW/@@download/ENCFF876DXW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF376WWY bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 6699798 ENCODE Processing Pipeline 121a59992b1f8f9a2f945bf456cc138c https://www.encodeproject.org/files/ENCFF376WWY/@@download/ENCFF376WWY.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF064NLV bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 6983798 ENCODE Processing Pipeline 5af869a078306bca92feada0d7c57ab9 https://www.encodeproject.org/files/ENCFF064NLV/@@download/ENCFF064NLV.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF788NCL bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF064NLV 13500840 ENCODE Processing Pipeline 248feb1d6a633029fcc2b72b79f47251 https://www.encodeproject.org/files/ENCFF788NCL/@@download/ENCFF788NCL.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF780CWW bed narrowPeak peaks and background as input for IDR ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 7254883 ENCODE Processing Pipeline b5f5ed7dd287778c210e937728db8391 https://www.encodeproject.org/files/ENCFF780CWW/@@download/ENCFF780CWW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF097ALZ bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF376WWY 13324357 ENCODE Processing Pipeline d26855aefeb7a66463faae2e3d031f87 https://www.encodeproject.org/files/ENCFF097ALZ/@@download/ENCFF097ALZ.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF780BKI bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF780CWW 13367195 ENCODE Processing Pipeline e35438818bf874e525fa589907e91580 https://www.encodeproject.org/files/ENCFF780BKI/@@download/ENCFF780BKI.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF302BKM bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF064NLV, ENCFF376WWY, ENCFF419RSJ, ENCFF780CWW 298718 ENCODE Processing Pipeline 00b6bbac71a5ba953406742456749ee4 https://www.encodeproject.org/files/ENCFF302BKM/@@download/ENCFF302BKM.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF231QJP bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF302BKM 634076 ENCODE Processing Pipeline 34c8ae3688007028509c0dfdba530fd4 https://www.encodeproject.org/files/ENCFF231QJP/@@download/ENCFF231QJP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF830TFU bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF064NLV, ENCFF376WWY, ENCFF419RSJ, ENCFF780CWW 447452 ENCODE Processing Pipeline 92781e8dd9618c16c8b470fd8d520e6c https://www.encodeproject.org/files/ENCFF830TFU/@@download/ENCFF830TFU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF531RDU bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF830TFU 873996 ENCODE Processing Pipeline 3c2179211073e43fbd74177bba2f5065 https://www.encodeproject.org/files/ENCFF531RDU/@@download/ENCFF531RDU.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF735XQT bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF776OJT, ENCFF779SCE, ENCFF829ZUO 374394 ENCODE Processing Pipeline eddaf519deab6f458ba3799769f43a01 https://www.encodeproject.org/files/ENCFF735XQT/@@download/ENCFF735XQT.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF169ZWD bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF776OJT, ENCFF779SCE, ENCFF829ZUO 244958 ENCODE Processing Pipeline d48e8002b562c88a9b055dea07239329 https://www.encodeproject.org/files/ENCFF169ZWD/@@download/ENCFF169ZWD.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF383VKS bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF735XQT 618541 ENCODE Processing Pipeline ce60f5d8ca33b6693b5a2162459d66bc https://www.encodeproject.org/files/ENCFF383VKS/@@download/ENCFF383VKS.bigBed hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF618ORZ bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF169ZWD 451770 ENCODE Processing Pipeline 6a8a085b7fd93e6c389d5c01bb78e5b9 https://www.encodeproject.org/files/ENCFF618ORZ/@@download/ENCFF618ORZ.bigBed hg19 archived moderate library complexity, mild to moderate bottlenecking ENCFF000WGJ bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGX 474113513 Michael Snyder, Stanford f53ce82d7d265d978692b9f33021b99b https://www.encodeproject.org/files/ENCFF000WGJ/@@download/ENCFF000WGJ.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000WGK bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFU 3827306 Michael Snyder, Stanford c1df79cf805f377102458a3fa7aaf135 https://www.encodeproject.org/files/ENCFF000WGK/@@download/ENCFF000WGK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000WGL bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGW 395884406 Michael Snyder, Stanford 0b2173463b42dd711e5d50002fb9cfc0 https://www.encodeproject.org/files/ENCFF000WGL/@@download/ENCFF000WGL.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000WGM bigWig signal ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 344372268 Michael Snyder, Stanford 8554e0b6704a57b3fcbb93947efae435 https://www.encodeproject.org/files/ENCFF000WGM/@@download/ENCFF000WGM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000WGW fastq reads ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 806330313 Michael Snyder, Stanford db88a7fc8d4e7ac3f22fd4dc0afddde3 https://www.encodeproject.org/files/ENCFF000WGW/@@download/ENCFF000WGW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000WGX fastq reads ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 989164401 Michael Snyder, Stanford 39cf9528405df7b52844458020c3101b https://www.encodeproject.org/files/ENCFF000WGX/@@download/ENCFF000WGX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001VFU bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1458801 Michael Snyder, Stanford ce36bc4458f8ca1d03d8f68f8a8bc630 https://www.encodeproject.org/files/ENCFF001VFU/@@download/ENCFF001VFU.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002CPW bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 478466 ENCODE Consortium Analysis Working Group 01f2af5399bd0b982e3d3b88e66168bc https://www.encodeproject.org/files/ENCFF002CPW/@@download/ENCFF002CPW.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF908ULD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPW 985755 ENCODE Consortium ee3820a8af648015a92ea0b732c0a10d https://www.encodeproject.org/files/ENCFF908ULD/@@download/ENCFF908ULD.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF418QOL bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF643CGH 838599281 ENCODE Processing Pipeline 740a3217ca246dbff48d2ead5dd8bfb4 https://www.encodeproject.org/files/ENCFF418QOL/@@download/ENCFF418QOL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF803OPC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF643CGH 480760362 ENCODE Processing Pipeline 5cc256bc0c4076fe55898fb6520882ae https://www.encodeproject.org/files/ENCFF803OPC/@@download/ENCFF803OPC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF557VJE bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF643CGH 1023419292 ENCODE Processing Pipeline 67f1976790c3bb7b0e88d05db7d018bf https://www.encodeproject.org/files/ENCFF557VJE/@@download/ENCFF557VJE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF515QUC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF643CGH 612143328 ENCODE Processing Pipeline 9c2d6e3684543b10a9e284e1062b6f6a https://www.encodeproject.org/files/ENCFF515QUC/@@download/ENCFF515QUC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF790BKQ bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF807MUK 835820493 ENCODE Processing Pipeline 7e8db67ddbffaf53d2b86d04ec503ce5 https://www.encodeproject.org/files/ENCFF790BKQ/@@download/ENCFF790BKQ.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF530MSA bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF807MUK 1020315679 ENCODE Processing Pipeline dee5caa808b9e2b2ff13f147cf7c33bd https://www.encodeproject.org/files/ENCFF530MSA/@@download/ENCFF530MSA.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF780HMW bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF807MUK 612165360 ENCODE Processing Pipeline 8094fa9f81ae140cd792a6dfc09a7b26 https://www.encodeproject.org/files/ENCFF780HMW/@@download/ENCFF780HMW.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF737NXE bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF807MUK 478522616 ENCODE Processing Pipeline a99090c574b45c8b431e53b57f05ed85 https://www.encodeproject.org/files/ENCFF737NXE/@@download/ENCFF737NXE.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF420LVZ bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 1202287 ENCODE Processing Pipeline 9a03c7827ce76a74f9da2efe2a493131 https://www.encodeproject.org/files/ENCFF420LVZ/@@download/ENCFF420LVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF494ONL bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 193436625 ENCODE Processing Pipeline ac5e915eae8d3ee380b1f319b6da05a0 https://www.encodeproject.org/files/ENCFF494ONL/@@download/ENCFF494ONL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF833HQN bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 187690618 ENCODE Processing Pipeline 77aeafbdb8305f9d3d6f29dd8021c93a https://www.encodeproject.org/files/ENCFF833HQN/@@download/ENCFF833HQN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF221NBF bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 259206459 ENCODE Processing Pipeline 985a02aae5d2a526db64b519bc9c8378 https://www.encodeproject.org/files/ENCFF221NBF/@@download/ENCFF221NBF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF954TMQ bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 214224556 ENCODE Processing Pipeline de42257e7b7a2170ca0feeda80dfe95b https://www.encodeproject.org/files/ENCFF954TMQ/@@download/ENCFF954TMQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF649XXN bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF704WHY 10770415 ENCODE Processing Pipeline bfef2f014922bd0b7cd2819119776a98 https://www.encodeproject.org/files/ENCFF649XXN/@@download/ENCFF649XXN.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF046WGV bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 4561903 ENCODE Processing Pipeline ef41780b200cca0f8494cd0f0966947e https://www.encodeproject.org/files/ENCFF046WGV/@@download/ENCFF046WGV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF704WHY bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 4810779 ENCODE Processing Pipeline 79773cf4285bde62b184b4ee6170d762 https://www.encodeproject.org/files/ENCFF704WHY/@@download/ENCFF704WHY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF332VHB bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF046WGV 10368475 ENCODE Processing Pipeline ca67f4cb5c9a864840d23f4806d02b21 https://www.encodeproject.org/files/ENCFF332VHB/@@download/ENCFF332VHB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF631JFD bed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046WGV, ENCFF420LVZ, ENCFF704WHY 194862 ENCODE Processing Pipeline 22cc3e3c719e82b0ed27ea44620cf424 https://www.encodeproject.org/files/ENCFF631JFD/@@download/ENCFF631JFD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF265YWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF141SAU 1094529 ENCODE Processing Pipeline b2b687f6830f786f2512165aa4a9f004 https://www.encodeproject.org/files/ENCFF265YWY/@@download/ENCFF265YWY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF671NJF bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 230951206 ENCODE Processing Pipeline ab92e4a6a6c78f2167b2f7c9adf1a991 https://www.encodeproject.org/files/ENCFF671NJF/@@download/ENCFF671NJF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF639ZAX bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 432316195 ENCODE Processing Pipeline cf4606dc2c6b1568a6384150dcc2572d https://www.encodeproject.org/files/ENCFF639ZAX/@@download/ENCFF639ZAX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF619TNA bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420LVZ 2551217 ENCODE Processing Pipeline b13c2dde1187c782f1750081da8d6568 https://www.encodeproject.org/files/ENCFF619TNA/@@download/ENCFF619TNA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF564ZYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF631JFD 343484 ENCODE Processing Pipeline be9c81a57da421f4f476704fd8bae698 https://www.encodeproject.org/files/ENCFF564ZYC/@@download/ENCFF564ZYC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF141SAU bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046WGV, ENCFF420LVZ, ENCFF704WHY 660604 ENCODE Processing Pipeline 8b9eb2c39e56a1197433faf476328b10 https://www.encodeproject.org/files/ENCFF141SAU/@@download/ENCFF141SAU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF129YCR bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 257662368 ENCODE Processing Pipeline 0d26eac27c389d921c22915ae2744302 https://www.encodeproject.org/files/ENCFF129YCR/@@download/ENCFF129YCR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF914GNY bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 193621715 ENCODE Processing Pipeline ab535b0139ce852f529e67416ae7a62a https://www.encodeproject.org/files/ENCFF914GNY/@@download/ENCFF914GNY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF932ZQY bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 231355979 ENCODE Processing Pipeline 9368fc2e1a2f6b68ab465e847903288f https://www.encodeproject.org/files/ENCFF932ZQY/@@download/ENCFF932ZQY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF295LDK bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 1286153 ENCODE Processing Pipeline 20a532c43c31db2ce278eeae1ff4049f https://www.encodeproject.org/files/ENCFF295LDK/@@download/ENCFF295LDK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF787MDS bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070IOT 10400931 ENCODE Processing Pipeline 2d89c3790ee620f7dc810611040422ff https://www.encodeproject.org/files/ENCFF787MDS/@@download/ENCFF787MDS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF114TBN bed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070IOT, ENCFF295LDK, ENCFF419RSJ, ENCFF664ASN 208931 ENCODE Processing Pipeline 6484d6efcdf031e6d1c15fdadb6abbe1 https://www.encodeproject.org/files/ENCFF114TBN/@@download/ENCFF114TBN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF032DJE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114TBN 362014 ENCODE Processing Pipeline 1eba8789ac107ba1e7bf9db5c808fe0d https://www.encodeproject.org/files/ENCFF032DJE/@@download/ENCFF032DJE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF421BOL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF193POQ 1101619 ENCODE Processing Pipeline 2a9ac9e2f6e00f9b40f285b876444315 https://www.encodeproject.org/files/ENCFF421BOL/@@download/ENCFF421BOL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF267GHZ bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 187718109 ENCODE Processing Pipeline 92650ad9646982b31dd41e693f62c70d https://www.encodeproject.org/files/ENCFF267GHZ/@@download/ENCFF267GHZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF070IOT bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 4554896 ENCODE Processing Pipeline 02add92a304067216b398cfd5624c617 https://www.encodeproject.org/files/ENCFF070IOT/@@download/ENCFF070IOT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF928QSB bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 215444284 ENCODE Processing Pipeline 74666e3d3685f37fce6ba629c8bd0300 https://www.encodeproject.org/files/ENCFF928QSB/@@download/ENCFF928QSB.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF972SJN bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 432879133 ENCODE Processing Pipeline b3463fce1e2fea771adf7c336135a297 https://www.encodeproject.org/files/ENCFF972SJN/@@download/ENCFF972SJN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF664ASN bed narrowPeak peaks and background as input for IDR ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 4808025 ENCODE Processing Pipeline 6a0087191598867661ad5f2774a88ff8 https://www.encodeproject.org/files/ENCFF664ASN/@@download/ENCFF664ASN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF311LJL bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295LDK 2748889 ENCODE Processing Pipeline 9bcd2ed02a494fa199002a0715c5bbaa https://www.encodeproject.org/files/ENCFF311LJL/@@download/ENCFF311LJL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF348WDF bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF664ASN 10773119 ENCODE Processing Pipeline d94d4a587bea4e126590c3cf2921a375 https://www.encodeproject.org/files/ENCFF348WDF/@@download/ENCFF348WDF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF193POQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070IOT, ENCFF295LDK, ENCFF419RSJ, ENCFF664ASN 664411 ENCODE Processing Pipeline 0adc6bc4ed7a8d55d148205247cf28d9 https://www.encodeproject.org/files/ENCFF193POQ/@@download/ENCFF193POQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000NTF bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTS 732148044 Richard Myers, HAIB 6e3a790e78b9858d207af4d0f2481a49 https://www.encodeproject.org/files/ENCFF000NTF/@@download/ENCFF000NTF.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTG bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTV 1225452186 Richard Myers, HAIB 79106e1fe92f00b8ec9582057afc6137 https://www.encodeproject.org/files/ENCFF000NTG/@@download/ENCFF000NTG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTI bigBed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWL 853434 Richard Myers, HAIB 8442d10612e5c86f6efd5ff69b965acd https://www.encodeproject.org/files/ENCFF000NTI/@@download/ENCFF000NTI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTJ bigBed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWM 422576 Richard Myers, HAIB c75694ea091e7a308eaf6e6d2497dab9 https://www.encodeproject.org/files/ENCFF000NTJ/@@download/ENCFF000NTJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTK bigWig raw signal ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 18078508 Richard Myers, HAIB cb8b59f1f38ac1125a8058dd278e474a https://www.encodeproject.org/files/ENCFF000NTK/@@download/ENCFF000NTK.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NTM bigWig raw signal ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 20505001 Richard Myers, HAIB 1f41f8d0ea69510b55f3f6b4d679b3bc https://www.encodeproject.org/files/ENCFF000NTM/@@download/ENCFF000NTM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NTS fastq reads ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 772866571 Richard Myers, HAIB 4719bfee507fdaf2aff47483116a5e2b https://www.encodeproject.org/files/ENCFF000NTS/@@download/ENCFF000NTS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000NTV fastq reads ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1177773055 Richard Myers, HAIB 500816db69d3c7328da04d081ff62f0f https://www.encodeproject.org/files/ENCFF000NTV/@@download/ENCFF000NTV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWL bed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 462380 Richard Myers, HAIB cd090da1dfcbdaf52d7ea6923fda8227 https://www.encodeproject.org/files/ENCFF001TWL/@@download/ENCFF001TWL.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWM bed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 246997 Richard Myers, HAIB c1faa9b72ce2481246ca13d44818e42f https://www.encodeproject.org/files/ENCFF001TWM/@@download/ENCFF001TWM.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGT bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 119918 ENCODE Consortium Analysis Working Group cd8131abfae3d224d17aeabf9e7dd1f9 https://www.encodeproject.org/files/ENCFF002CGT/@@download/ENCFF002CGT.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF476LFV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGT 275922 ENCODE Consortium 74428b817bac7ee136ce666ccff19253 https://www.encodeproject.org/files/ENCFF476LFV/@@download/ENCFF476LFV.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF662GDH bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF807MUK 1091109495 ENCODE Processing Pipeline 88ec92f33ed18d2d22272957edbce8e0 https://www.encodeproject.org/files/ENCFF662GDH/@@download/ENCFF662GDH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF276KQJ bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF807MUK 710120009 ENCODE Processing Pipeline 10c3ccb031661a8ab100e1cf4c895bad https://www.encodeproject.org/files/ENCFF276KQJ/@@download/ENCFF276KQJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF800ZBG bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF807MUK 1550128692 ENCODE Processing Pipeline d0a9fb43c8f7f545feade72b5ed2a084 https://www.encodeproject.org/files/ENCFF800ZBG/@@download/ENCFF800ZBG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF797QYH bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF807MUK 1022192467 ENCODE Processing Pipeline 52e7eef633f862b9d2d4b190b1a81c9b https://www.encodeproject.org/files/ENCFF797QYH/@@download/ENCFF797QYH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF881AUO bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF643CGH 1093888173 ENCODE Processing Pipeline 9261054a67ab29dea38ca7bee77191a6 https://www.encodeproject.org/files/ENCFF881AUO/@@download/ENCFF881AUO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF250QDG bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF643CGH 1551443400 ENCODE Processing Pipeline 26aaa62ae5c2712a914633da4ce8c892 https://www.encodeproject.org/files/ENCFF250QDG/@@download/ENCFF250QDG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF163XSL bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF643CGH 1028045683 ENCODE Processing Pipeline ca95d4f9dcce0229400b69e1267ba40a https://www.encodeproject.org/files/ENCFF163XSL/@@download/ENCFF163XSL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF809UVF bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF643CGH 712812891 ENCODE Processing Pipeline d5040a8a3f66f50ef633e709509d02ad https://www.encodeproject.org/files/ENCFF809UVF/@@download/ENCFF809UVF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF633VAX bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 480272614 ENCODE Processing Pipeline 2658f0f730e4a5bbe1283f80e5897d5d https://www.encodeproject.org/files/ENCFF633VAX/@@download/ENCFF633VAX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF729GAG bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 935492323 ENCODE Processing Pipeline 0ce5f35dffc3be831c0aaa692398703e https://www.encodeproject.org/files/ENCFF729GAG/@@download/ENCFF729GAG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF508YPS bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 411733752 ENCODE Processing Pipeline 05a1418c757e361a429fc8d6bf501e0e https://www.encodeproject.org/files/ENCFF508YPS/@@download/ENCFF508YPS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF572KPX bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF962SVE 12675209 ENCODE Processing Pipeline 38b0368b943a8edc0ebf4315fa0ea9e2 https://www.encodeproject.org/files/ENCFF572KPX/@@download/ENCFF572KPX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF176LKF bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 625341695 ENCODE Processing Pipeline 0867ac4796e990d14f1810d6aef5be06 https://www.encodeproject.org/files/ENCFF176LKF/@@download/ENCFF176LKF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF870HVW bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 890355764 ENCODE Processing Pipeline 67122bcc946b69cc441e99f9dbdaa8cd https://www.encodeproject.org/files/ENCFF870HVW/@@download/ENCFF870HVW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF962SVE bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 5847160 ENCODE Processing Pipeline 892871ae3bc2d33caf1780c0d01e7edc https://www.encodeproject.org/files/ENCFF962SVE/@@download/ENCFF962SVE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF046VSY bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 666594746 ENCODE Processing Pipeline 3b5c894e218d55dd5c543c71a7441d3a https://www.encodeproject.org/files/ENCFF046VSY/@@download/ENCFF046VSY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF376ZGQ bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 7080927 ENCODE Processing Pipeline 883715647ae49afac7603e47721b356b https://www.encodeproject.org/files/ENCFF376ZGQ/@@download/ENCFF376ZGQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF180SGO bed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313OEI, ENCFF376ZGQ, ENCFF419RSJ, ENCFF962SVE 377712 ENCODE Processing Pipeline aa32cdb64c97f0d9a4ab8e0758844149 https://www.encodeproject.org/files/ENCFF180SGO/@@download/ENCFF180SGO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF275LYR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF180SGO 755123 ENCODE Processing Pipeline 8eddc92cd2e9c224c0f72d808547a281 https://www.encodeproject.org/files/ENCFF275LYR/@@download/ENCFF275LYR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF587BJK bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313OEI, ENCFF376ZGQ, ENCFF419RSJ, ENCFF962SVE 419234 ENCODE Processing Pipeline 9dd4cdec593b5174cbc4f3ed4e3f91ca https://www.encodeproject.org/files/ENCFF587BJK/@@download/ENCFF587BJK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF313OEI bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 6424156 ENCODE Processing Pipeline c57a02e07873eadca766a115f0fd0f73 https://www.encodeproject.org/files/ENCFF313OEI/@@download/ENCFF313OEI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF468YBP bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF313OEI 12942220 ENCODE Processing Pipeline a1b4c9e7a9fb6ef18370af1427bd55bc https://www.encodeproject.org/files/ENCFF468YBP/@@download/ENCFF468YBP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF869QTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587BJK 819878 ENCODE Processing Pipeline 5058d69aa396cd57575f8e71df8707f3 https://www.encodeproject.org/files/ENCFF869QTA/@@download/ENCFF869QTA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF801MTQ bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376ZGQ 13000538 ENCODE Processing Pipeline 45861746ec7bb3c61065108564ae524a https://www.encodeproject.org/files/ENCFF801MTQ/@@download/ENCFF801MTQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF815JCA bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 479206803 ENCODE Processing Pipeline 041d9102dfc73c268130a3133ea8c248 https://www.encodeproject.org/files/ENCFF815JCA/@@download/ENCFF815JCA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF090EWP bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 415814229 ENCODE Processing Pipeline baf44cc9024e31b48c15df3423c3380e https://www.encodeproject.org/files/ENCFF090EWP/@@download/ENCFF090EWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF290LOY bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 671072876 ENCODE Processing Pipeline e8e936eea2b5ebeac36087bb5ee6c482 https://www.encodeproject.org/files/ENCFF290LOY/@@download/ENCFF290LOY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF663AUC bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF596IAY 12937014 ENCODE Processing Pipeline d47c9d3b72fe6adffdee9b83f0a91d08 https://www.encodeproject.org/files/ENCFF663AUC/@@download/ENCFF663AUC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF596IAY bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6443781 ENCODE Processing Pipeline 095302b6744b84ea2547f4ca832e1167 https://www.encodeproject.org/files/ENCFF596IAY/@@download/ENCFF596IAY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF590VTP bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6957744 ENCODE Processing Pipeline b5b28df4ebd5beb9606fa8be4f8c3997 https://www.encodeproject.org/files/ENCFF590VTP/@@download/ENCFF590VTP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF651ZJP bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF590VTP 12875942 ENCODE Processing Pipeline 304015fc67b93f07abd10198648e1d7c https://www.encodeproject.org/files/ENCFF651ZJP/@@download/ENCFF651ZJP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF525CFK bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 734023547 ENCODE Processing Pipeline 19f022e5a38731bae2697db8957a2e33 https://www.encodeproject.org/files/ENCFF525CFK/@@download/ENCFF525CFK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF036IRJ bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 609263204 ENCODE Processing Pipeline f89053618d34176b38e8ce1cfd6f7060 https://www.encodeproject.org/files/ENCFF036IRJ/@@download/ENCFF036IRJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF488UUR bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 898709893 ENCODE Processing Pipeline b1fe33d024462f6ef904796523cc4719 https://www.encodeproject.org/files/ENCFF488UUR/@@download/ENCFF488UUR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF591DYQ bed narrowPeak peaks and background as input for IDR ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 5992434 ENCODE Processing Pipeline 29b8364052c75dd971eea56750045f7b https://www.encodeproject.org/files/ENCFF591DYQ/@@download/ENCFF591DYQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF639QPU bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF591DYQ 12880951 ENCODE Processing Pipeline d05d64e5b0b63bae549b257a51a524f1 https://www.encodeproject.org/files/ENCFF639QPU/@@download/ENCFF639QPU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF125YZO bed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF590VTP, ENCFF591DYQ, ENCFF596IAY 343187 ENCODE Processing Pipeline 7a0c8568a7e4953b44459e55da64dc13 https://www.encodeproject.org/files/ENCFF125YZO/@@download/ENCFF125YZO.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF633DTG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125YZO 710361 ENCODE Processing Pipeline e958bc64eb79ffd3250c1e92f23eeb3b https://www.encodeproject.org/files/ENCFF633DTG/@@download/ENCFF633DTG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF563QBC bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF590VTP, ENCFF591DYQ, ENCFF596IAY 384864 ENCODE Processing Pipeline dbc8a781e1fbe9d3923a0952f41aab3f https://www.encodeproject.org/files/ENCFF563QBC/@@download/ENCFF563QBC.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF448FCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF563QBC 775280 ENCODE Processing Pipeline dc875a0dbf5da10ea6b46d9f7005f2e3 https://www.encodeproject.org/files/ENCFF448FCZ/@@download/ENCFF448FCZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF708KIW bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF713GZG, ENCFF807MUK 4391620798 ENCODE Processing Pipeline 28f350600b7e3a160db7ff69bd4474e9 https://www.encodeproject.org/files/ENCFF708KIW/@@download/ENCFF708KIW.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF128ARE bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF807MUK 4337209150 ENCODE Processing Pipeline bd4662692252bf4472ac36db3f377f40 https://www.encodeproject.org/files/ENCFF128ARE/@@download/ENCFF128ARE.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF156KWQ fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF385BNN 2100546608 Michael Snyder, Stanford b0a7c0357f54a8fa55a0e3d5218d3a59 SRA:SRR6213569 https://www.encodeproject.org/files/ENCFF156KWQ/@@download/ENCFF156KWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF385BNN fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF156KWQ 2077437853 Michael Snyder, Stanford 903f9ac13a6ce846549703be657a760a SRA:SRR6213569 https://www.encodeproject.org/files/ENCFF385BNN/@@download/ENCFF385BNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF009PBB fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF713GZG 2051102198 Michael Snyder, Stanford 4da6e98ac41c8d12166bc4530dddbdcf SRA:SRR6213570 https://www.encodeproject.org/files/ENCFF009PBB/@@download/ENCFF009PBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF713GZG fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF009PBB 2070188554 Michael Snyder, Stanford 23402ba114682f46adeb235b9ca2d3fa SRA:SRR6213570 https://www.encodeproject.org/files/ENCFF713GZG/@@download/ENCFF713GZG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF986RIG bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF807MUK 3193155806 ENCODE Processing Pipeline 062909f89701baeddaa3e727bb4d0be8 https://www.encodeproject.org/files/ENCFF986RIG/@@download/ENCFF986RIG.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF638SXI bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF713GZG, ENCFF807MUK 3358236632 ENCODE Processing Pipeline 9a6e64e13e728fd1e3392c30748bd165 https://www.encodeproject.org/files/ENCFF638SXI/@@download/ENCFF638SXI.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF527QCD bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 1013077768 ENCODE Processing Pipeline 6a01594a3b6d3941fdb4136040b6b9a0 https://www.encodeproject.org/files/ENCFF527QCD/@@download/ENCFF527QCD.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF688JNM bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 1001994634 ENCODE Processing Pipeline bb73b3940afffd17061ecccf97e51242 https://www.encodeproject.org/files/ENCFF688JNM/@@download/ENCFF688JNM.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF313RSD bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 1579213091 ENCODE Processing Pipeline 2dc7068ebfad43f3ebe1c5fc80dd4103 https://www.encodeproject.org/files/ENCFF313RSD/@@download/ENCFF313RSD.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF168VEC bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 1036047740 ENCODE Processing Pipeline b9c3be2db639212a99a6fd76accdc65d https://www.encodeproject.org/files/ENCFF168VEC/@@download/ENCFF168VEC.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF185JWK bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 968443510 ENCODE Processing Pipeline e89d21a86aef030e3489c882c7c04c13 https://www.encodeproject.org/files/ENCFF185JWK/@@download/ENCFF185JWK.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF389ZFU bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 1934051946 ENCODE Processing Pipeline e2a3ed8e4eadfe21f4f6e3659dbf3da0 https://www.encodeproject.org/files/ENCFF389ZFU/@@download/ENCFF389ZFU.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF355VTC bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 6873273 ENCODE Processing Pipeline bd46a08ed077ace5b8107ccd58e88758 https://www.encodeproject.org/files/ENCFF355VTC/@@download/ENCFF355VTC.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF967CAZ bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 6954200 ENCODE Processing Pipeline 8b447b898ea55dce473bff838c277fe9 https://www.encodeproject.org/files/ENCFF967CAZ/@@download/ENCFF967CAZ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF835NAG bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF355VTC 13089800 ENCODE Processing Pipeline 8d51390efe9bbbcb776e05a69a5fe82b https://www.encodeproject.org/files/ENCFF835NAG/@@download/ENCFF835NAG.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF747HDW bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 7010928 ENCODE Processing Pipeline 66d366b0c77c5e889377fb1a23c00b6f https://www.encodeproject.org/files/ENCFF747HDW/@@download/ENCFF747HDW.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF657ZCP bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF967CAZ 12784218 ENCODE Processing Pipeline 4b45b24487b8fa9927db6b5443146797 https://www.encodeproject.org/files/ENCFF657ZCP/@@download/ENCFF657ZCP.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF991EIM bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF747HDW 12557389 ENCODE Processing Pipeline f04b08368bac5e29975ba5bce7ffdaa3 https://www.encodeproject.org/files/ENCFF991EIM/@@download/ENCFF991EIM.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF493CKV bigBed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF994AJY 1558078 ENCODE Processing Pipeline ece3072884642e3030712ce6bfe7cd83 https://www.encodeproject.org/files/ENCFF493CKV/@@download/ENCFF493CKV.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking mismatched status ENCFF739VBA bed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF355VTC, ENCFF747HDW, ENCFF967CAZ 705800 ENCODE Processing Pipeline ec5a897f10c3d09972e5e87ace8881fe https://www.encodeproject.org/files/ENCFF739VBA/@@download/ENCFF739VBA.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF456FQB bed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF355VTC, ENCFF747HDW, ENCFF967CAZ 832809 ENCODE Processing Pipeline 6b113719c6955fcab69d5d9844245c7c https://www.encodeproject.org/files/ENCFF456FQB/@@download/ENCFF456FQB.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF290UXK bigBed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF542RSN 1774662 ENCODE Processing Pipeline 40eec2f0c938ad429e8fc2b4b08b790a https://www.encodeproject.org/files/ENCFF290UXK/@@download/ENCFF290UXK.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking mismatched status ENCFF673ZOT bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF643CGH, ENCFF713GZG 4392445511 ENCODE Processing Pipeline a1a870a396bfc76b0e22a2e9a078baa6 https://www.encodeproject.org/files/ENCFF673ZOT/@@download/ENCFF673ZOT.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF071AWI bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF643CGH 4337373521 ENCODE Processing Pipeline 65e234ce98f4ec4b667405342ea8437d https://www.encodeproject.org/files/ENCFF071AWI/@@download/ENCFF071AWI.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF869PJB bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF643CGH, ENCFF713GZG 3367021605 ENCODE Processing Pipeline cb921f27a6f78bb38aac0c5654b65efd https://www.encodeproject.org/files/ENCFF869PJB/@@download/ENCFF869PJB.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF476WPJ bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF643CGH 3199068771 ENCODE Processing Pipeline ed3ae697d4b13b8c6ca33618f3244b4a https://www.encodeproject.org/files/ENCFF476WPJ/@@download/ENCFF476WPJ.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF055EZY bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 987598898 ENCODE Processing Pipeline 4f2d99f45b82e3dd654d4bbf38c64a3c https://www.encodeproject.org/files/ENCFF055EZY/@@download/ENCFF055EZY.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF217AOO bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 1045914198 ENCODE Processing Pipeline 7a6df233d38035c1b4b1b20f1e7c18e0 https://www.encodeproject.org/files/ENCFF217AOO/@@download/ENCFF217AOO.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF078RYC bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 1695542506 ENCODE Processing Pipeline 9c07ebcd950e21b1a3a0b2b0c96c8a5f https://www.encodeproject.org/files/ENCFF078RYC/@@download/ENCFF078RYC.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF684GRP bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 1036819788 ENCODE Processing Pipeline c134d3fd33951608d20a8d7fd8a5c3cd https://www.encodeproject.org/files/ENCFF684GRP/@@download/ENCFF684GRP.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF569ATE bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 949047697 ENCODE Processing Pipeline 3cf35f9e6bd7c249cf84a652ee013fdf https://www.encodeproject.org/files/ENCFF569ATE/@@download/ENCFF569ATE.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF621JFM bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 1943221489 ENCODE Processing Pipeline bde9ba33d13537116e6c8836b1a67dc0 https://www.encodeproject.org/files/ENCFF621JFM/@@download/ENCFF621JFM.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF568GKT bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 6948509 ENCODE Processing Pipeline 6868eacb0bc15eff55b62234ff2cd487 https://www.encodeproject.org/files/ENCFF568GKT/@@download/ENCFF568GKT.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF452OXX bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 6891919 ENCODE Processing Pipeline 395fdd75ce57c797fc714b2d54fbb37a https://www.encodeproject.org/files/ENCFF452OXX/@@download/ENCFF452OXX.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF212XGY bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF452OXX 13170229 ENCODE Processing Pipeline 74dd5e227eca21c125011930e280d041 https://www.encodeproject.org/files/ENCFF212XGY/@@download/ENCFF212XGY.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF613TWO bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF568GKT 12843324 ENCODE Processing Pipeline 4f8d558e296f71d31cb926c4b77db918 https://www.encodeproject.org/files/ENCFF613TWO/@@download/ENCFF613TWO.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF832IJM bed narrowPeak peaks and background as input for IDR ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 7017285 ENCODE Processing Pipeline 68a86cd8ad55d101a31614cd610d7634 https://www.encodeproject.org/files/ENCFF832IJM/@@download/ENCFF832IJM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF192MYZ bed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF452OXX, ENCFF568GKT, ENCFF832IJM 705777 ENCODE Processing Pipeline ab248c0e8372c589358ed9428744a0a1 https://www.encodeproject.org/files/ENCFF192MYZ/@@download/ENCFF192MYZ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF347ZTM bigBed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF192MYZ 1560057 ENCODE Processing Pipeline 260820a7c4fbd818e0ba3da7f6c63bf6 https://www.encodeproject.org/files/ENCFF347ZTM/@@download/ENCFF347ZTM.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF598CRI bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF832IJM 12575374 ENCODE Processing Pipeline d2e9311bec4d5ec0952929f4abad608d https://www.encodeproject.org/files/ENCFF598CRI/@@download/ENCFF598CRI.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF105YDI bed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF452OXX, ENCFF568GKT, ENCFF832IJM 832280 ENCODE Processing Pipeline 88b113cd67e84cd0d0416860fa012590 https://www.encodeproject.org/files/ENCFF105YDI/@@download/ENCFF105YDI.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF475FDM bigBed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF105YDI 1779825 ENCODE Processing Pipeline 751e0daaf72968e83e9be311b5778b69 https://www.encodeproject.org/files/ENCFF475FDM/@@download/ENCFF475FDM.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF000OGZ bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHH 647269454 Richard Myers, HAIB a6b5132b35204d66234e725e207fc24e https://www.encodeproject.org/files/ENCFF000OGZ/@@download/ENCFF000OGZ.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OHA bigBed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZO 1256006 Richard Myers, HAIB 885d977682cfbd552205977a888396d0 https://www.encodeproject.org/files/ENCFF000OHA/@@download/ENCFF000OHA.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OHB bigBed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZP 659676 Richard Myers, HAIB d3f7f3e07e0560afa5c010666fddb5b0 https://www.encodeproject.org/files/ENCFF000OHB/@@download/ENCFF000OHB.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OHC bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHO 904794966 Richard Myers, HAIB f092e703dcadae39bc6b23822d35cf98 https://www.encodeproject.org/files/ENCFF000OHC/@@download/ENCFF000OHC.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OHE bigWig raw signal ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 26317942 Richard Myers, HAIB cc27a689917814fcecee01016d61448a https://www.encodeproject.org/files/ENCFF000OHE/@@download/ENCFF000OHE.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OHF bigWig raw signal ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 25047592 Richard Myers, HAIB 07d05eeda195d75fefed7265e5db2fd9 https://www.encodeproject.org/files/ENCFF000OHF/@@download/ENCFF000OHF.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OHH fastq reads ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 581477238 Richard Myers, HAIB 0b60c6268a7255ea7ae942a6215682fb https://www.encodeproject.org/files/ENCFF000OHH/@@download/ENCFF000OHH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OHO fastq reads ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 863934127 Richard Myers, HAIB da8e48228be3f8a5fea131d51b22f9d2 https://www.encodeproject.org/files/ENCFF000OHO/@@download/ENCFF000OHO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TZO bed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 666520 Richard Myers, HAIB a29950c6492e8c0d60cd220391c33357 https://www.encodeproject.org/files/ENCFF001TZO/@@download/ENCFF001TZO.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TZP bed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 416373 Richard Myers, HAIB cfc701d0becf42a3175acd850cf8bf80 https://www.encodeproject.org/files/ENCFF001TZP/@@download/ENCFF001TZP.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CIC bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 613066 ENCODE Consortium Analysis Working Group 0eccf0b1b1a664b0b0dcef0493189e47 https://www.encodeproject.org/files/ENCFF002CIC/@@download/ENCFF002CIC.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF042DNE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIC 1287683 ENCODE Consortium 4d11dd335c3360cddf8df1c0138525ac https://www.encodeproject.org/files/ENCFF042DNE/@@download/ENCFF042DNE.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF289YVM bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF643CGH 442490409 ENCODE Processing Pipeline 37fd30462d8d41f254c0eb0e4b337018 https://www.encodeproject.org/files/ENCFF289YVM/@@download/ENCFF289YVM.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF407NZY bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF643CGH 782971031 ENCODE Processing Pipeline bb16713de0b8a39f8a16c98fc5e3c575 https://www.encodeproject.org/files/ENCFF407NZY/@@download/ENCFF407NZY.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF363ZTA bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF643CGH 1112071793 ENCODE Processing Pipeline 072ae3bdce868640c3e59b2d72e4f4fe https://www.encodeproject.org/files/ENCFF363ZTA/@@download/ENCFF363ZTA.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF163HDB bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF643CGH 639062899 ENCODE Processing Pipeline 99daa5cff601df1f27f366e87e907180 https://www.encodeproject.org/files/ENCFF163HDB/@@download/ENCFF163HDB.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF975UGB bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF807MUK 784451815 ENCODE Processing Pipeline e0d8ffbf24481482cb956a3edb09ce98 https://www.encodeproject.org/files/ENCFF975UGB/@@download/ENCFF975UGB.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF180NKF bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF807MUK 438673705 ENCODE Processing Pipeline 227ffc1b331aae4aca01d8712b9f8436 https://www.encodeproject.org/files/ENCFF180NKF/@@download/ENCFF180NKF.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF004ZLO bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF807MUK 633611087 ENCODE Processing Pipeline be07d469c7d4a64d93c44711a4787018 https://www.encodeproject.org/files/ENCFF004ZLO/@@download/ENCFF004ZLO.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF448GPH bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF807MUK 1111772301 ENCODE Processing Pipeline cf44fc4f48c1e04cd98e6bce031eb251 https://www.encodeproject.org/files/ENCFF448GPH/@@download/ENCFF448GPH.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF891FDD bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 588763568 ENCODE Processing Pipeline 59e2acbc1c34728d37ed20fd29d00309 https://www.encodeproject.org/files/ENCFF891FDD/@@download/ENCFF891FDD.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF510LGI bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 335838617 ENCODE Processing Pipeline 78ee25dfd1a236f21d68f6e0fd85eccf https://www.encodeproject.org/files/ENCFF510LGI/@@download/ENCFF510LGI.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF722WRN bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 833402735 ENCODE Processing Pipeline b472977be83d244076ce49b5e471ad13 https://www.encodeproject.org/files/ENCFF722WRN/@@download/ENCFF722WRN.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF674NNU bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 708870408 ENCODE Processing Pipeline f48bf047bbee637f9b9abec57a0afc43 https://www.encodeproject.org/files/ENCFF674NNU/@@download/ENCFF674NNU.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF684PCV bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 414743977 ENCODE Processing Pipeline 62a3af623216f7c3892b42eb09d84579 https://www.encodeproject.org/files/ENCFF684PCV/@@download/ENCFF684PCV.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF666IGK bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 5542575 ENCODE Processing Pipeline 2cfc97e21b2137c273877dc178e44511 https://www.encodeproject.org/files/ENCFF666IGK/@@download/ENCFF666IGK.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF140ADI bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 5752082 ENCODE Processing Pipeline a78861e998a19801700488edfd516ab4 https://www.encodeproject.org/files/ENCFF140ADI/@@download/ENCFF140ADI.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF683NGY bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 623187294 ENCODE Processing Pipeline ae25fbac7db02cfbc34dd4738a2a614a https://www.encodeproject.org/files/ENCFF683NGY/@@download/ENCFF683NGY.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF985NQM bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 6262989 ENCODE Processing Pipeline 23ff238f106741906d9ffd7c02b6288f https://www.encodeproject.org/files/ENCFF985NQM/@@download/ENCFF985NQM.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF197NLU bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF666IGK 12762415 ENCODE Processing Pipeline e008580df5b44455c579f2bf75764465 https://www.encodeproject.org/files/ENCFF197NLU/@@download/ENCFF197NLU.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF421WJC bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140ADI 12993601 ENCODE Processing Pipeline 8ef957e626f5c9e80ce18216f8a47df8 https://www.encodeproject.org/files/ENCFF421WJC/@@download/ENCFF421WJC.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF560KGH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223MUF 979646 ENCODE Processing Pipeline add5680f557e3966da4c11af6fcd27bd https://www.encodeproject.org/files/ENCFF560KGH/@@download/ENCFF560KGH.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF260TXW bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF985NQM 12984316 ENCODE Processing Pipeline a5aeeae924e2c0bb6b1d1eb16411269e https://www.encodeproject.org/files/ENCFF260TXW/@@download/ENCFF260TXW.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF271FAK bed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140ADI, ENCFF419RSJ, ENCFF666IGK, ENCFF985NQM 564924 ENCODE Processing Pipeline 4c48fa0a73b3b920825a68d73dd98c5c https://www.encodeproject.org/files/ENCFF271FAK/@@download/ENCFF271FAK.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF197UNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271FAK 940725 ENCODE Processing Pipeline d3ca02abbdea58381e421cb059aec09d https://www.encodeproject.org/files/ENCFF197UNQ/@@download/ENCFF197UNQ.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF223MUF bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140ADI, ENCFF419RSJ, ENCFF666IGK, ENCFF985NQM 595214 ENCODE Processing Pipeline e0c1a03030d40720438ac80e3b88653f https://www.encodeproject.org/files/ENCFF223MUF/@@download/ENCFF223MUF.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF654FZK bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 602082844 ENCODE Processing Pipeline da1f1b78f7af92d747e7fc474ac238fb https://www.encodeproject.org/files/ENCFF654FZK/@@download/ENCFF654FZK.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF930MGB bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 336986559 ENCODE Processing Pipeline 0617b905e72cd14feffda0546e0499a9 https://www.encodeproject.org/files/ENCFF930MGB/@@download/ENCFF930MGB.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF263YUU bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 658190645 ENCODE Processing Pipeline d76657fb71da57506c683feec3061157 https://www.encodeproject.org/files/ENCFF263YUU/@@download/ENCFF263YUU.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF249ILB bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 417119334 ENCODE Processing Pipeline f6ff67a63bbdde29609915b1216b43fb https://www.encodeproject.org/files/ENCFF249ILB/@@download/ENCFF249ILB.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF946GYF bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 722167696 ENCODE Processing Pipeline 87098cd4c4c1da22a0202407f6580dba https://www.encodeproject.org/files/ENCFF946GYF/@@download/ENCFF946GYF.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF631VCL bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 626041426 ENCODE Processing Pipeline af2fa7e4d88e5046a692a57f9d347ab5 https://www.encodeproject.org/files/ENCFF631VCL/@@download/ENCFF631VCL.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF497SWR bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF138XMK 12986914 ENCODE Processing Pipeline 92a78ea4e2ebd71ff7ffa6b05c82cc2f https://www.encodeproject.org/files/ENCFF497SWR/@@download/ENCFF497SWR.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF794ILD bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 5690456 ENCODE Processing Pipeline b7a1d833bed610efdfaecd2e6c6ae8f6 https://www.encodeproject.org/files/ENCFF794ILD/@@download/ENCFF794ILD.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF543MQS bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF864PVD 12761304 ENCODE Processing Pipeline 7586bdd3320dcb1517a26bf622a90bcc https://www.encodeproject.org/files/ENCFF543MQS/@@download/ENCFF543MQS.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF294BZJ bed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF138XMK, ENCFF794ILD, ENCFF864PVD 559947 ENCODE Processing Pipeline a53e587a32b6cbacb2ff75b4145c632a https://www.encodeproject.org/files/ENCFF294BZJ/@@download/ENCFF294BZJ.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF864PVD bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 5535261 ENCODE Processing Pipeline 90807ae650d4013601096acbb16706a4 https://www.encodeproject.org/files/ENCFF864PVD/@@download/ENCFF864PVD.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF967ACD bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF138XMK, ENCFF794ILD, ENCFF864PVD 602532 ENCODE Processing Pipeline a52540d0d7e72164a332058a082387ee https://www.encodeproject.org/files/ENCFF967ACD/@@download/ENCFF967ACD.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF138XMK bed narrowPeak peaks and background as input for IDR ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 6263456 ENCODE Processing Pipeline 872dd57a1c7e43c09eb137851f3bc4ed https://www.encodeproject.org/files/ENCFF138XMK/@@download/ENCFF138XMK.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF294LAS bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF794ILD 12919960 ENCODE Processing Pipeline 0a660054eb7ce77bcaf6c4ea4df70c80 https://www.encodeproject.org/files/ENCFF294LAS/@@download/ENCFF294LAS.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF338GRE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294BZJ 935363 ENCODE Processing Pipeline 8656080e41af5e5bfbe57d799800703b https://www.encodeproject.org/files/ENCFF338GRE/@@download/ENCFF338GRE.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF173FVR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF967ACD 988401 ENCODE Processing Pipeline 7889131856967302a4631d69ff908ccb https://www.encodeproject.org/files/ENCFF173FVR/@@download/ENCFF173FVR.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NYS bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZH 852373336 Richard Myers, HAIB 07e7eb98afe186496a387c34b4699b9a https://www.encodeproject.org/files/ENCFF000NYS/@@download/ENCFF000NYS.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NYT bigBed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXW 480299 Richard Myers, HAIB cc9f378c2c3af70f19f99378f8bccb50 https://www.encodeproject.org/files/ENCFF000NYT/@@download/ENCFF000NYT.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NYU bigBed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXX 305845 Richard Myers, HAIB 84599874511916d9ca9e86da43e1c060 https://www.encodeproject.org/files/ENCFF000NYU/@@download/ENCFF000NYU.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NYV bigWig raw signal ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 25608562 Richard Myers, HAIB 10c4ca4024c96d05a7e4d81f0b886008 https://www.encodeproject.org/files/ENCFF000NYV/@@download/ENCFF000NYV.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NYW bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZG 1341600814 Richard Myers, HAIB 6a14de4571be25a5eb6dffbb8469b43d https://www.encodeproject.org/files/ENCFF000NYW/@@download/ENCFF000NYW.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NYX bigWig raw signal ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 9992559 Richard Myers, HAIB a05c1182b3269efa5353f54d7238e810 https://www.encodeproject.org/files/ENCFF000NYX/@@download/ENCFF000NYX.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NZG fastq reads ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 754739900 Richard Myers, HAIB a18d83a560f04bb18b4ab5ea2caecc60 https://www.encodeproject.org/files/ENCFF000NZG/@@download/ENCFF000NZG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NZH fastq reads ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 558811486 Richard Myers, HAIB aa9f424a3feae1d620194ec0cb465151 https://www.encodeproject.org/files/ENCFF000NZH/@@download/ENCFF000NZH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF001TXW bed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 240803 Richard Myers, HAIB f24789c55ae60cf5179f98e5964a4fd1 https://www.encodeproject.org/files/ENCFF001TXW/@@download/ENCFF001TXW.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF001TXX bed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 126216 Richard Myers, HAIB 0786f37aa6f0692d2aaef5817f7e4054 https://www.encodeproject.org/files/ENCFF001TXX/@@download/ENCFF001TXX.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF002CHI bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 115128 ENCODE Consortium Analysis Working Group 0258dfcc5a886fb896f9f4e633e299dd https://www.encodeproject.org/files/ENCFF002CHI/@@download/ENCFF002CHI.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF845LPS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHI 319108 ENCODE Consortium c3b3da65ad51e994e40795209e4612c0 https://www.encodeproject.org/files/ENCFF845LPS/@@download/ENCFF845LPS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF699DCV bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF643CGH 685221658 ENCODE Processing Pipeline 53d4d30f6b1baa581cb2d730952d29f6 https://www.encodeproject.org/files/ENCFF699DCV/@@download/ENCFF699DCV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF238NNG bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF643CGH 310275520 ENCODE Processing Pipeline 7599dcd4abaf09cb6ffedc43703a36c7 https://www.encodeproject.org/files/ENCFF238NNG/@@download/ENCFF238NNG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF465HGT bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF643CGH 994115228 ENCODE Processing Pipeline a3e89d80ab8ae55bec4762011d9d61bf https://www.encodeproject.org/files/ENCFF465HGT/@@download/ENCFF465HGT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF725DLZ bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF643CGH 599962686 ENCODE Processing Pipeline 5f82c1cb2947b17272ec39b3c5bbaead https://www.encodeproject.org/files/ENCFF725DLZ/@@download/ENCFF725DLZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF369KBK bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF807MUK 682953244 ENCODE Processing Pipeline 4322108bb08030026dd22b8c28aee2aa https://www.encodeproject.org/files/ENCFF369KBK/@@download/ENCFF369KBK.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF187YDX bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF807MUK 309178351 ENCODE Processing Pipeline 0c58dd0be7608af3d9c84b4dd1f1ba83 https://www.encodeproject.org/files/ENCFF187YDX/@@download/ENCFF187YDX.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF234DXO bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF807MUK 597556285 ENCODE Processing Pipeline 0d0d50c13ac18ccee1fbf4878e8be6b7 https://www.encodeproject.org/files/ENCFF234DXO/@@download/ENCFF234DXO.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF431HRP bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF807MUK 990901497 ENCODE Processing Pipeline 9f7b5e1bb883c4fac30a6a6ddf7424ab https://www.encodeproject.org/files/ENCFF431HRP/@@download/ENCFF431HRP.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF174NFH bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 406639379 ENCODE Processing Pipeline bf6ddeae2978cfe43bbb307e574a477e https://www.encodeproject.org/files/ENCFF174NFH/@@download/ENCFF174NFH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF619YLP bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 360626772 ENCODE Processing Pipeline 62fd7cafe0bc99068264162e1397bebb https://www.encodeproject.org/files/ENCFF619YLP/@@download/ENCFF619YLP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF826BKR bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 734765993 ENCODE Processing Pipeline 45a7696aa832d3bf5a6d2752c8fdc346 https://www.encodeproject.org/files/ENCFF826BKR/@@download/ENCFF826BKR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF296HRK bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 279053604 ENCODE Processing Pipeline 1aa2900e8a4e7c79af452f130319519e https://www.encodeproject.org/files/ENCFF296HRK/@@download/ENCFF296HRK.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF399SZY bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 500378476 ENCODE Processing Pipeline cd33d6d28a772dd9f73ad3a6581fc840 https://www.encodeproject.org/files/ENCFF399SZY/@@download/ENCFF399SZY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF464GYA bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 128337601 ENCODE Processing Pipeline 582e14c948126fd07fb446d6f865bf84 https://www.encodeproject.org/files/ENCFF464GYA/@@download/ENCFF464GYA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF899RAJ bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 4360194 ENCODE Processing Pipeline 7219bebfbd849aed818cd746acdedf15 https://www.encodeproject.org/files/ENCFF899RAJ/@@download/ENCFF899RAJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF404QHU bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 1149531 ENCODE Processing Pipeline 3124f38680d3e4bbe13b65f769b59656 https://www.encodeproject.org/files/ENCFF404QHU/@@download/ENCFF404QHU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF270CFW bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404QHU 2129781 ENCODE Processing Pipeline 1580bc3fe1c243f50b7c708cc2328303 https://www.encodeproject.org/files/ENCFF270CFW/@@download/ENCFF270CFW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF486GIV bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 5175861 ENCODE Processing Pipeline 76ccc9fd1954871ffa96f188d6c91246 https://www.encodeproject.org/files/ENCFF486GIV/@@download/ENCFF486GIV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF204BQF bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF899RAJ 10686924 ENCODE Processing Pipeline 6b8c7b7e572f12ef62ed82b072f63048 https://www.encodeproject.org/files/ENCFF204BQF/@@download/ENCFF204BQF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF723KBR bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF486GIV 11309209 ENCODE Processing Pipeline d8243b96aa2324c4072438a1f7da30af https://www.encodeproject.org/files/ENCFF723KBR/@@download/ENCFF723KBR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF510FUM bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QHU, ENCFF419RSJ, ENCFF486GIV, ENCFF899RAJ 87078 ENCODE Processing Pipeline e5671af475cef3c62bdaba84b37c57e1 https://www.encodeproject.org/files/ENCFF510FUM/@@download/ENCFF510FUM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF803HGS bed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QHU, ENCFF419RSJ, ENCFF486GIV, ENCFF899RAJ 39648 ENCODE Processing Pipeline f65e486ab2cb208ecf0b8478980f1e3b https://www.encodeproject.org/files/ENCFF803HGS/@@download/ENCFF803HGS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF155DSW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF510FUM 228448 ENCODE Processing Pipeline 2da29a38a1d9d0afebf60481cf264297 https://www.encodeproject.org/files/ENCFF155DSW/@@download/ENCFF155DSW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF208HOU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF803HGS 125694 ENCODE Processing Pipeline 63caac3fdacbe8828580996dc6de6b0c https://www.encodeproject.org/files/ENCFF208HOU/@@download/ENCFF208HOU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF272WSV bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 416245056 ENCODE Processing Pipeline 21e4247a228a246d46e69953d0d0dc04 https://www.encodeproject.org/files/ENCFF272WSV/@@download/ENCFF272WSV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF043YVW bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 273094729 ENCODE Processing Pipeline 1b205bfc3a830a237b012527b025a841 https://www.encodeproject.org/files/ENCFF043YVW/@@download/ENCFF043YVW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF915ENV bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 128303600 ENCODE Processing Pipeline 0ffb5cd075b33e77178d8ef88aac3467 https://www.encodeproject.org/files/ENCFF915ENV/@@download/ENCFF915ENV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF221GCA bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 738647040 ENCODE Processing Pipeline 76e87607d90d4b61c513a00acf930159 https://www.encodeproject.org/files/ENCFF221GCA/@@download/ENCFF221GCA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF508TEV bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 500455280 ENCODE Processing Pipeline ce5b3356bee93b0bc6d36164c0911f29 https://www.encodeproject.org/files/ENCFF508TEV/@@download/ENCFF508TEV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF833QJP bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 419811524 ENCODE Processing Pipeline cdd14e2d2488e6a538e27d1b2661bbba https://www.encodeproject.org/files/ENCFF833QJP/@@download/ENCFF833QJP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF043OJL bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 5125639 ENCODE Processing Pipeline 7621f6dca5edd01ed58a7a5286efedc2 https://www.encodeproject.org/files/ENCFF043OJL/@@download/ENCFF043OJL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF901YUN bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 4351005 ENCODE Processing Pipeline b23728d0a6808390a3eddef6eaf3e13b https://www.encodeproject.org/files/ENCFF901YUN/@@download/ENCFF901YUN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF482HUC bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF804LKJ 2215091 ENCODE Processing Pipeline 32cd761c5693f0d48f8260b181e69bab https://www.encodeproject.org/files/ENCFF482HUC/@@download/ENCFF482HUC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF578CRG bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF043OJL 11270136 ENCODE Processing Pipeline c4fa580eba4304705e0a508b11c9c256 https://www.encodeproject.org/files/ENCFF578CRG/@@download/ENCFF578CRG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF216WND bed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF043OJL, ENCFF804LKJ, ENCFF901YUN 34254 ENCODE Processing Pipeline 8c2d2bb0c6ff2617ed0cdf02a7b591d9 https://www.encodeproject.org/files/ENCFF216WND/@@download/ENCFF216WND.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF804LKJ bed narrowPeak peaks and background as input for IDR ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 1207971 ENCODE Processing Pipeline ba9d4821757dea35896c8804bb35174c https://www.encodeproject.org/files/ENCFF804LKJ/@@download/ENCFF804LKJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF364FXC bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF901YUN 10692430 ENCODE Processing Pipeline 4929ffb52f0f2558b6d9c2d394047476 https://www.encodeproject.org/files/ENCFF364FXC/@@download/ENCFF364FXC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF624LJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF302XID 175113 ENCODE Processing Pipeline eabf439bf11372c9feb74bd58525ecb7 https://www.encodeproject.org/files/ENCFF624LJQ/@@download/ENCFF624LJQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF425DVR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF216WND 97674 ENCODE Processing Pipeline dc7639db52453b49eed01d698b2ef43b https://www.encodeproject.org/files/ENCFF425DVR/@@download/ENCFF425DVR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF302XID bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF043OJL, ENCFF804LKJ, ENCFF901YUN 74253 ENCODE Processing Pipeline 86772eabea3fb88597077cba207fc9b3 https://www.encodeproject.org/files/ENCFF302XID/@@download/ENCFF302XID.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF746BEA fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF096BNX 5668882188 Michael Snyder, Stanford fd2e04e291512b864560ea066a7f3711 https://www.encodeproject.org/files/ENCFF746BEA/@@download/ENCFF746BEA.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF096BNX fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF746BEA 5121257734 Michael Snyder, Stanford 3d4469bb4337e82ebaa7953cbb069b98 https://www.encodeproject.org/files/ENCFF096BNX/@@download/ENCFF096BNX.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF423CLL fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF920YLL 4604696312 Michael Snyder, Stanford 7832d9aef024b0e28d9915b0204d0831 https://www.encodeproject.org/files/ENCFF423CLL/@@download/ENCFF423CLL.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF920YLL fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF423CLL 4623870042 Michael Snyder, Stanford 80061463c2b4187ef78faa4d1ab68a45 https://www.encodeproject.org/files/ENCFF920YLL/@@download/ENCFF920YLL.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF767EYL bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF807MUK, ENCFF920YLL 8598637093 ENCODE Processing Pipeline 6625c23436d714e2c18aa762e13ca8df https://www.encodeproject.org/files/ENCFF767EYL/@@download/ENCFF767EYL.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF951GLQ bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF643CGH, ENCFF920YLL 8599046000 ENCODE Processing Pipeline 932ea3c7828ca7448d95d6136561381d https://www.encodeproject.org/files/ENCFF951GLQ/@@download/ENCFF951GLQ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF207TPA bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF643CGH, ENCFF746BEA 9044049688 ENCODE Processing Pipeline 21b1d3a80fa0060d651f01eb2df26506 https://www.encodeproject.org/files/ENCFF207TPA/@@download/ENCFF207TPA.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF387RFR bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF746BEA, ENCFF807MUK 9066926286 ENCODE Processing Pipeline a7f029fcd71cf4ce7f491734d8ce9475 https://www.encodeproject.org/files/ENCFF387RFR/@@download/ENCFF387RFR.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF245PXJ bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF807MUK, ENCFF920YLL 3913336857 ENCODE Processing Pipeline 6f9ef5e1f83e7aac1ff45585bcac86e8 https://www.encodeproject.org/files/ENCFF245PXJ/@@download/ENCFF245PXJ.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF018ITN bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF643CGH, ENCFF920YLL 3922535427 ENCODE Processing Pipeline 370aca14dcbd55c3ed75cba26d533063 https://www.encodeproject.org/files/ENCFF018ITN/@@download/ENCFF018ITN.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF560TMS bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF643CGH, ENCFF746BEA 4876341558 ENCODE Processing Pipeline fa62ee1c6dfe09107f27a9d3744c1c47 https://www.encodeproject.org/files/ENCFF560TMS/@@download/ENCFF560TMS.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF683DXC bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF746BEA, ENCFF807MUK 4844006387 ENCODE Processing Pipeline 0cda1dff0e7d7b5ab1f3281a1b7aecde https://www.encodeproject.org/files/ENCFF683DXC/@@download/ENCFF683DXC.bam hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF364BED bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 1099671367 ENCODE Processing Pipeline a7add35bc2b58286933f027b3c604303 https://www.encodeproject.org/files/ENCFF364BED/@@download/ENCFF364BED.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF263OTK bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1710537429 ENCODE Processing Pipeline d7382c13d3c947ffeb1e6d962e383931 https://www.encodeproject.org/files/ENCFF263OTK/@@download/ENCFF263OTK.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF663OWL bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1933442140 ENCODE Processing Pipeline 56829e9f259f4d6a7c50d31d3061c312 https://www.encodeproject.org/files/ENCFF663OWL/@@download/ENCFF663OWL.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF736HYF bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 1204413692 ENCODE Processing Pipeline fe9ed24a163d6efffc594698c604162e https://www.encodeproject.org/files/ENCFF736HYF/@@download/ENCFF736HYF.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF027GXL bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1946649099 ENCODE Processing Pipeline c51ffa2475bf2a2c531594e51d770640 https://www.encodeproject.org/files/ENCFF027GXL/@@download/ENCFF027GXL.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF158HLI bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 2423352334 ENCODE Processing Pipeline 57a7aee24f731c699184f63e4f964458 https://www.encodeproject.org/files/ENCFF158HLI/@@download/ENCFF158HLI.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF172UOB bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 6178196 ENCODE Processing Pipeline 4426a4ea966e640b31b13fc2e2836553 https://www.encodeproject.org/files/ENCFF172UOB/@@download/ENCFF172UOB.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF467WTS bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 7321391 ENCODE Processing Pipeline 97a94f5dbe76c1dafdac0bb5948975f9 https://www.encodeproject.org/files/ENCFF467WTS/@@download/ENCFF467WTS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF500GHH bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 6986623 ENCODE Processing Pipeline c85d20f14641924408142531cfafdd20 https://www.encodeproject.org/files/ENCFF500GHH/@@download/ENCFF500GHH.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF469SDP bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF172UOB 11326514 ENCODE Processing Pipeline 5e3d11932c2efc1f88e4d3653781e08b https://www.encodeproject.org/files/ENCFF469SDP/@@download/ENCFF469SDP.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF748SFF bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF500GHH 11396961 ENCODE Processing Pipeline 99b8cdb52faf1eb45e292066a71ea292 https://www.encodeproject.org/files/ENCFF748SFF/@@download/ENCFF748SFF.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF059TGS bigBed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF069KRU 571605 ENCODE Processing Pipeline 2e33234744e43da1304c5340046edb2b https://www.encodeproject.org/files/ENCFF059TGS/@@download/ENCFF059TGS.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF646RMP bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF467WTS 11482131 ENCODE Processing Pipeline 6a25dda8c161a23d30abc9d4eb5ea4a0 https://www.encodeproject.org/files/ENCFF646RMP/@@download/ENCFF646RMP.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF069KRU bed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF172UOB, ENCFF467WTS, ENCFF500GHH 283536 ENCODE Processing Pipeline 3ad6115fc98005ed4657fd0e2db1d73f https://www.encodeproject.org/files/ENCFF069KRU/@@download/ENCFF069KRU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF909FRA bed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF172UOB, ENCFF467WTS, ENCFF500GHH 355186 ENCODE Processing Pipeline 61fffb75b6f30e6189a0319942b70dab https://www.encodeproject.org/files/ENCFF909FRA/@@download/ENCFF909FRA.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF829XQW bigBed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF909FRA 672937 ENCODE Processing Pipeline ef44ab90bd76f91cfde8e9eefcd64a9d https://www.encodeproject.org/files/ENCFF829XQW/@@download/ENCFF829XQW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF065HFA bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 1223405899 ENCODE Processing Pipeline 1b8b8592eaaf81e9ac87f4452ff37b2a https://www.encodeproject.org/files/ENCFF065HFA/@@download/ENCFF065HFA.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF395DWL bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1790993946 ENCODE Processing Pipeline c76d444320aa821c377876ac23e8e0a3 https://www.encodeproject.org/files/ENCFF395DWL/@@download/ENCFF395DWL.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF766UCI bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1855229779 ENCODE Processing Pipeline c560177c0b38af78ea8071c67911a15a https://www.encodeproject.org/files/ENCFF766UCI/@@download/ENCFF766UCI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF167UMY bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 1200455696 ENCODE Processing Pipeline ad4a526e86efe8ac31a3794104dbc189 https://www.encodeproject.org/files/ENCFF167UMY/@@download/ENCFF167UMY.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF348IWB bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1984640854 ENCODE Processing Pipeline 48d27e8320adf17de4dbfe381f13bddd https://www.encodeproject.org/files/ENCFF348IWB/@@download/ENCFF348IWB.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF569CSW bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 2426650348 ENCODE Processing Pipeline dfe0f13c108fb93b2ed1f04576b9545b https://www.encodeproject.org/files/ENCFF569CSW/@@download/ENCFF569CSW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF116RPQ bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 6942901 ENCODE Processing Pipeline ccb069f27ef165c3bd152a710f3dea4d https://www.encodeproject.org/files/ENCFF116RPQ/@@download/ENCFF116RPQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF021GHV bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF116RPQ 11385890 ENCODE Processing Pipeline 8b662456da9673ffcb625dc1b260bcd2 https://www.encodeproject.org/files/ENCFF021GHV/@@download/ENCFF021GHV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF439JXH bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF800IJR 11306831 ENCODE Processing Pipeline 4220b1cee23702f64630bbf2199f48c9 https://www.encodeproject.org/files/ENCFF439JXH/@@download/ENCFF439JXH.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF654JXR bed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF116RPQ, ENCFF419RSJ, ENCFF596JYU, ENCFF800IJR 294331 ENCODE Processing Pipeline 0b6dffd6bab421678cff136b350909ac https://www.encodeproject.org/files/ENCFF654JXR/@@download/ENCFF654JXR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF154RXM bigBed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF654JXR 551713 ENCODE Processing Pipeline 2cdbc2b07dcc8c3eea063a93bccb01ab https://www.encodeproject.org/files/ENCFF154RXM/@@download/ENCFF154RXM.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF323KAA bigBed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF766WWB 804371 ENCODE Processing Pipeline 8a9e45363e70c8bb7a92437d73dc5b15 https://www.encodeproject.org/files/ENCFF323KAA/@@download/ENCFF323KAA.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF596JYU bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 7305883 ENCODE Processing Pipeline 1a85f71ab72d1c6c6e0859485ca10b6c https://www.encodeproject.org/files/ENCFF596JYU/@@download/ENCFF596JYU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF240WOE bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF596JYU 11459628 ENCODE Processing Pipeline ff7c896e70037f7e239335f9c3a4676d https://www.encodeproject.org/files/ENCFF240WOE/@@download/ENCFF240WOE.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF766WWB bed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF116RPQ, ENCFF419RSJ, ENCFF596JYU, ENCFF800IJR 363257 ENCODE Processing Pipeline 35a0e07587872dbbb364026f767616bb https://www.encodeproject.org/files/ENCFF766WWB/@@download/ENCFF766WWB.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF800IJR bed narrowPeak peaks and background as input for IDR ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 5993007 ENCODE Processing Pipeline 30d09d48654f15d7a6df43ea684bc590 https://www.encodeproject.org/files/ENCFF800IJR/@@download/ENCFF800IJR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF367BMZ fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF697JWX 4361484076 Michael Snyder, Stanford 8275532161dd016b3f0b2ebcb52d6e80 SRA:SRR6213641 https://www.encodeproject.org/files/ENCFF367BMZ/@@download/ENCFF367BMZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF952VLJ fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF230ILN 2260725117 Michael Snyder, Stanford c8749ddf78e896ded7d2be5bbea75f7f SRA:SRR6213642 https://www.encodeproject.org/files/ENCFF952VLJ/@@download/ENCFF952VLJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF697JWX fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF367BMZ 4099856088 Michael Snyder, Stanford 5e0ba57f16ea9b309fd463a171987be8 SRA:SRR6213641 https://www.encodeproject.org/files/ENCFF697JWX/@@download/ENCFF697JWX.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF230ILN fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF952VLJ 2502409073 Michael Snyder, Stanford 674828bdcb2d458ce41de059e6e5d56d SRA:SRR6213642 https://www.encodeproject.org/files/ENCFF230ILN/@@download/ENCFF230ILN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF263GBY bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF643CGH, ENCFF952VLJ 4682225573 ENCODE Processing Pipeline 53a70bdd04ab7fd435e8e3a8000c8c78 https://www.encodeproject.org/files/ENCFF263GBY/@@download/ENCFF263GBY.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF309MTT bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF807MUK, ENCFF952VLJ 4677511109 ENCODE Processing Pipeline b84101961d517f9682c779d65d719b3e https://www.encodeproject.org/files/ENCFF309MTT/@@download/ENCFF309MTT.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF253RNG bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF643CGH, ENCFF697JWX 7656391563 ENCODE Processing Pipeline 2ef3e2fcf85d52ab468c456729baa695 https://www.encodeproject.org/files/ENCFF253RNG/@@download/ENCFF253RNG.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF870YQK bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF643CGH, ENCFF952VLJ 3492365386 ENCODE Processing Pipeline 9d8f66b558bee3f31aea2350297f0696 https://www.encodeproject.org/files/ENCFF870YQK/@@download/ENCFF870YQK.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF405TSG bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF807MUK, ENCFF952VLJ 3486018682 ENCODE Processing Pipeline d4be12a08e04de40d86c64f6bf81476a https://www.encodeproject.org/files/ENCFF405TSG/@@download/ENCFF405TSG.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF338NXC bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF643CGH, ENCFF697JWX 4969036124 ENCODE Processing Pipeline 7b10d83afbcbe1537f7ffb79a62cd0c6 https://www.encodeproject.org/files/ENCFF338NXC/@@download/ENCFF338NXC.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF293UYK bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF697JWX, ENCFF807MUK 7652558570 ENCODE Processing Pipeline bfee8e47e1dde467e7b737e3faf9e06f https://www.encodeproject.org/files/ENCFF293UYK/@@download/ENCFF293UYK.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF429AJS bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF697JWX, ENCFF807MUK 4957031101 ENCODE Processing Pipeline 7bb5230a39494b8e7f69c15ffd870f23 https://www.encodeproject.org/files/ENCFF429AJS/@@download/ENCFF429AJS.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF813ILR bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 1007617352 ENCODE Processing Pipeline 57f2acd6b18b7e44cba4fd459bc1364b https://www.encodeproject.org/files/ENCFF813ILR/@@download/ENCFF813ILR.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF002KMW bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 1648816139 ENCODE Processing Pipeline b183e7538b30f0fd2c291b99e3e96d48 https://www.encodeproject.org/files/ENCFF002KMW/@@download/ENCFF002KMW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF608IXU bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 2207390579 ENCODE Processing Pipeline a833d57cf95d14d7cf0e5c6f82e47ab4 https://www.encodeproject.org/files/ENCFF608IXU/@@download/ENCFF608IXU.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF124AYA bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 1119743717 ENCODE Processing Pipeline 4d8ecee5b1075c27d1b068175ab78b89 https://www.encodeproject.org/files/ENCFF124AYA/@@download/ENCFF124AYA.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF817GJH bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 1993298874 ENCODE Processing Pipeline 44686ba1fb8e3f61f02c918132055e95 https://www.encodeproject.org/files/ENCFF817GJH/@@download/ENCFF817GJH.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF045XLJ bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 2342446914 ENCODE Processing Pipeline f54b7058104d05a678c2a797702c404e https://www.encodeproject.org/files/ENCFF045XLJ/@@download/ENCFF045XLJ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF431GOQ bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 6827192 ENCODE Processing Pipeline eab27a127aef882b18d69401c9b98761 https://www.encodeproject.org/files/ENCFF431GOQ/@@download/ENCFF431GOQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF515FMR bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 7226284 ENCODE Processing Pipeline bf3da0bc8c3f37d49ce335c43b3ae03f https://www.encodeproject.org/files/ENCFF515FMR/@@download/ENCFF515FMR.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF379VSR bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 7269282 ENCODE Processing Pipeline c209b87ef398b9d2764f36162ab6b259 https://www.encodeproject.org/files/ENCFF379VSR/@@download/ENCFF379VSR.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF931WNT bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF431GOQ 12978189 ENCODE Processing Pipeline 79a3f28232f3a859f48aeff81a68242d https://www.encodeproject.org/files/ENCFF931WNT/@@download/ENCFF931WNT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF286TLK bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF379VSR 13152121 ENCODE Processing Pipeline 679d9149b11107c166051474bed27302 https://www.encodeproject.org/files/ENCFF286TLK/@@download/ENCFF286TLK.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF337XDI bed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF379VSR, ENCFF431GOQ, ENCFF515FMR 707927 ENCODE Processing Pipeline 8590b47ba9e5029572e480c0556dbced https://www.encodeproject.org/files/ENCFF337XDI/@@download/ENCFF337XDI.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF063PKA bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF515FMR 13193570 ENCODE Processing Pipeline a93a92772b787235c1d674e59a084785 https://www.encodeproject.org/files/ENCFF063PKA/@@download/ENCFF063PKA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF571TOW bigBed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF337XDI 1587870 ENCODE Processing Pipeline 4c220bc4fc5a4687f850f6798a55045c https://www.encodeproject.org/files/ENCFF571TOW/@@download/ENCFF571TOW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF339FFC bed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF379VSR, ENCFF431GOQ, ENCFF515FMR 878892 ENCODE Processing Pipeline d96de9a2859401cbdc832a84bc103e4d https://www.encodeproject.org/files/ENCFF339FFC/@@download/ENCFF339FFC.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF417XQY bigBed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF339FFC 1898765 ENCODE Processing Pipeline 0394895810ab4d4a5a6134e3028a0689 https://www.encodeproject.org/files/ENCFF417XQY/@@download/ENCFF417XQY.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF382BMO bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 1242370946 ENCODE Processing Pipeline 4c658dc5a86a982359048bfd9913f6b7 https://www.encodeproject.org/files/ENCFF382BMO/@@download/ENCFF382BMO.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF386NEY bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 1792593693 ENCODE Processing Pipeline 7f9ce621e26dd21af12ddbed6b5ad961 https://www.encodeproject.org/files/ENCFF386NEY/@@download/ENCFF386NEY.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF138CZM bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 1888945152 ENCODE Processing Pipeline 131ad6921e8e9d2526269d8513ae6834 https://www.encodeproject.org/files/ENCFF138CZM/@@download/ENCFF138CZM.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF817SQJ bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 1105331548 ENCODE Processing Pipeline d0ea10d17fab1541c8a433c61a909f09 https://www.encodeproject.org/files/ENCFF817SQJ/@@download/ENCFF817SQJ.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF148PRA bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 1975377539 ENCODE Processing Pipeline e230bb329b9caf78b26a77ffe5d1079b https://www.encodeproject.org/files/ENCFF148PRA/@@download/ENCFF148PRA.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF613CYH bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 2344255761 ENCODE Processing Pipeline 26571496e263a0b8663194dfe50c4a27 https://www.encodeproject.org/files/ENCFF613CYH/@@download/ENCFF613CYH.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF148YIM bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF016LVW 12987144 ENCODE Processing Pipeline 0c1292aa4012ee1079f7a31b90148d75 https://www.encodeproject.org/files/ENCFF148YIM/@@download/ENCFF148YIM.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF764DSU bed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF016LVW, ENCFF307WNL, ENCFF419RSJ, ENCFF634RWE 709528 ENCODE Processing Pipeline c27258846d921c51b0ccb2d3ed1b1334 https://www.encodeproject.org/files/ENCFF764DSU/@@download/ENCFF764DSU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF489WUP bigBed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF764DSU 1590546 ENCODE Processing Pipeline 6ff329a1710fc2c61968e8acfe51ae5b https://www.encodeproject.org/files/ENCFF489WUP/@@download/ENCFF489WUP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF738EPP bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF634RWE 13163834 ENCODE Processing Pipeline c0747eb4262ba1d8524583b190b75781 https://www.encodeproject.org/files/ENCFF738EPP/@@download/ENCFF738EPP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF526WVH bed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF016LVW, ENCFF307WNL, ENCFF419RSJ, ENCFF634RWE 871355 ENCODE Processing Pipeline 466dc0fc0dbdc5c7412e8b9413345657 https://www.encodeproject.org/files/ENCFF526WVH/@@download/ENCFF526WVH.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF016LVW bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 6775589 ENCODE Processing Pipeline c40350fdb023f4d85661c31d1d3f4c9e https://www.encodeproject.org/files/ENCFF016LVW/@@download/ENCFF016LVW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF634RWE bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 7273466 ENCODE Processing Pipeline bf316cfd5eab104982b4b99c34d21d96 https://www.encodeproject.org/files/ENCFF634RWE/@@download/ENCFF634RWE.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF041VBM bigBed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF526WVH 1888033 ENCODE Processing Pipeline 2358c12c82d1d32d129ba653496f0ec5 https://www.encodeproject.org/files/ENCFF041VBM/@@download/ENCFF041VBM.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF520AII bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF307WNL 13236302 ENCODE Processing Pipeline 54f3b357f3052f20ed8db2752072041c https://www.encodeproject.org/files/ENCFF520AII/@@download/ENCFF520AII.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF307WNL bed narrowPeak peaks and background as input for IDR ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 7241042 ENCODE Processing Pipeline e734575e2331625fc8a14c955b11cb01 https://www.encodeproject.org/files/ENCFF307WNL/@@download/ENCFF307WNL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF000OAG bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OAU 1396552795 Richard Myers, HAIB 7427cc5d553e4514fb412670700960c3 https://www.encodeproject.org/files/ENCFF000OAG/@@download/ENCFF000OAG.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAH bigBed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYG 1448370 Richard Myers, HAIB d8120567e21bea58deab0fd3836a54fc https://www.encodeproject.org/files/ENCFF000OAH/@@download/ENCFF000OAH.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAI bigBed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYH 1539375 Richard Myers, HAIB 368b4fe8a494650423c14d20304df661 https://www.encodeproject.org/files/ENCFF000OAI/@@download/ENCFF000OAI.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAJ bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OAS 1232286491 Richard Myers, HAIB 3208440aa5ec3cb3a3723533ed339914 https://www.encodeproject.org/files/ENCFF000OAJ/@@download/ENCFF000OAJ.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAK bigWig raw signal ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 88252715 Richard Myers, HAIB 7fef1abc369efd946063747752ef0a9b https://www.encodeproject.org/files/ENCFF000OAK/@@download/ENCFF000OAK.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OAM bigWig raw signal ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 583770527 Richard Myers, HAIB fc201ca115694d70e450f2217b4a936d https://www.encodeproject.org/files/ENCFF000OAM/@@download/ENCFF000OAM.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OAS fastq reads ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1496921410 Richard Myers, HAIB 8ac33e07431d08cbb560fea3bcfaee44 https://www.encodeproject.org/files/ENCFF000OAS/@@download/ENCFF000OAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAU fastq reads ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1598915798 Richard Myers, HAIB 285f24737a7accbd192cb276899c4969 https://www.encodeproject.org/files/ENCFF000OAU/@@download/ENCFF000OAU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001TYG bed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 807334 Richard Myers, HAIB 917a90c75abd7b757b65a7c76f6a641e https://www.encodeproject.org/files/ENCFF001TYG/@@download/ENCFF001TYG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TYH bed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 926615 Richard Myers, HAIB 4d9cc98721dd68ccf988d8e7db1bf4e5 https://www.encodeproject.org/files/ENCFF001TYH/@@download/ENCFF001TYH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHN bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 412959 ENCODE Consortium Analysis Working Group a185d09c2f76fcf0396be3b27be0fb25 https://www.encodeproject.org/files/ENCFF002CHN/@@download/ENCFF002CHN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF616AHY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHN 1081452 ENCODE Consortium 784b519f52a5d61df963051d40aa1182 https://www.encodeproject.org/files/ENCFF616AHY/@@download/ENCFF616AHY.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF996YTS bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF643CGH 1929967547 ENCODE Processing Pipeline 791e41c1729d4f7c7bd54638c414dbc9 https://www.encodeproject.org/files/ENCFF996YTS/@@download/ENCFF996YTS.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF349ZII bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF643CGH 1789876447 ENCODE Processing Pipeline b55dbd577f36e6b9fa41cd211b512839 https://www.encodeproject.org/files/ENCFF349ZII/@@download/ENCFF349ZII.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF579AOQ bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF643CGH 955422465 ENCODE Processing Pipeline ba49402cd62db9c5ef7e9817cc391de9 https://www.encodeproject.org/files/ENCFF579AOQ/@@download/ENCFF579AOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF584LIV bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF643CGH 942187642 ENCODE Processing Pipeline 6c6f4d65435d3840c12d130381f54c91 https://www.encodeproject.org/files/ENCFF584LIV/@@download/ENCFF584LIV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF339TGE bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF807MUK 951926495 ENCODE Processing Pipeline 4a3398b99803861b9dabbc1b57c6c795 https://www.encodeproject.org/files/ENCFF339TGE/@@download/ENCFF339TGE.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF522HMN bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF807MUK 1788740029 ENCODE Processing Pipeline d29a7036cef7da4fb7c3a528c50eece6 https://www.encodeproject.org/files/ENCFF522HMN/@@download/ENCFF522HMN.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF111JMU bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF807MUK 1927701746 ENCODE Processing Pipeline 0f18305c0ffc17c9598042c649c7bbb3 https://www.encodeproject.org/files/ENCFF111JMU/@@download/ENCFF111JMU.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF042GNN bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF807MUK 938094989 ENCODE Processing Pipeline c57dfe52fdfa745298698489b5532805 https://www.encodeproject.org/files/ENCFF042GNN/@@download/ENCFF042GNN.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF058KOQ bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 506540915 ENCODE Processing Pipeline aebfd6541faa18670901d8e22e9bd2f9 https://www.encodeproject.org/files/ENCFF058KOQ/@@download/ENCFF058KOQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF248EKV bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 528583053 ENCODE Processing Pipeline ab4f601a16683f38675ce03404be212c https://www.encodeproject.org/files/ENCFF248EKV/@@download/ENCFF248EKV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF280SAT bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 779851913 ENCODE Processing Pipeline b11d51300fb225a149ea06b104111cb2 https://www.encodeproject.org/files/ENCFF280SAT/@@download/ENCFF280SAT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF553AQC bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 337766015 ENCODE Processing Pipeline 1ed5ba16e2520a4fc3cf69052ed58e17 https://www.encodeproject.org/files/ENCFF553AQC/@@download/ENCFF553AQC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF610QKW bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 6621470 ENCODE Processing Pipeline 5a5dfd9b42af8a50e9f28158631f4b89 https://www.encodeproject.org/files/ENCFF610QKW/@@download/ENCFF610QKW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF543JFC bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF610QKW 11249865 ENCODE Processing Pipeline 7a97c9d3bdab630922ad305db249ad67 https://www.encodeproject.org/files/ENCFF543JFC/@@download/ENCFF543JFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF126PLE bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF717BRE 10825900 ENCODE Processing Pipeline aff033656781d2b2f3276a744692a689 https://www.encodeproject.org/files/ENCFF126PLE/@@download/ENCFF126PLE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF835YRM bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 7161694 ENCODE Processing Pipeline 4d1c8e55a81b4e7fc52c4b57e819fb44 https://www.encodeproject.org/files/ENCFF835YRM/@@download/ENCFF835YRM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF600GQL bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF610QKW, ENCFF717BRE, ENCFF835YRM 648220 ENCODE Processing Pipeline 8fade63e00782681aecbfc71a77da0a6 https://www.encodeproject.org/files/ENCFF600GQL/@@download/ENCFF600GQL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF573ZIG bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 342902192 ENCODE Processing Pipeline ed8110ab94db17de590fee275139f76e https://www.encodeproject.org/files/ENCFF573ZIG/@@download/ENCFF573ZIG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF647IAI bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 718129144 ENCODE Processing Pipeline 6ca156c53890f3e5725fc74c5feaa86e https://www.encodeproject.org/files/ENCFF647IAI/@@download/ENCFF647IAI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF717BRE bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 6660784 ENCODE Processing Pipeline b3f8d4b0d509136460ab916f7f89078b https://www.encodeproject.org/files/ENCFF717BRE/@@download/ENCFF717BRE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF258UYV bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF835YRM 11577055 ENCODE Processing Pipeline a0cb4b055ac85acab72a35bf26cf75c1 https://www.encodeproject.org/files/ENCFF258UYV/@@download/ENCFF258UYV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF955PHX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF213VYK 1333709 ENCODE Processing Pipeline eb6df5069b57b328fed1bc03d17560ee https://www.encodeproject.org/files/ENCFF955PHX/@@download/ENCFF955PHX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF213VYK bed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF610QKW, ENCFF717BRE, ENCFF835YRM 592324 ENCODE Processing Pipeline e0b6668afe2e03ca4077b36e853b726a https://www.encodeproject.org/files/ENCFF213VYK/@@download/ENCFF213VYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF972JVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF600GQL 1457503 ENCODE Processing Pipeline a765472183f82a9c16ed001a88a3c3fa https://www.encodeproject.org/files/ENCFF972JVJ/@@download/ENCFF972JVJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF302YXC bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 461456031 ENCODE Processing Pipeline e1cdb7598d39de5326773e5396eaa5dd https://www.encodeproject.org/files/ENCFF302YXC/@@download/ENCFF302YXC.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF769IAK bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 338213333 ENCODE Processing Pipeline c0d238dc0581c8c832ff9699cf765da8 https://www.encodeproject.org/files/ENCFF769IAK/@@download/ENCFF769IAK.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF174PSA bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 850835221 ENCODE Processing Pipeline 2d8b5d9e2f73619c23b511eccc471464 https://www.encodeproject.org/files/ENCFF174PSA/@@download/ENCFF174PSA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF400TYC bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF845PQC 11143013 ENCODE Processing Pipeline 6af337bd8b5843ec3bd40b6ea809fe92 https://www.encodeproject.org/files/ENCFF400TYC/@@download/ENCFF400TYC.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF302BBG bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF252XCG 10856385 ENCODE Processing Pipeline 389958878cbb3073b803f4c19b0c54f4 https://www.encodeproject.org/files/ENCFF302BBG/@@download/ENCFF302BBG.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF125SQT bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF123VNC, ENCFF252XCG, ENCFF845PQC 641138 ENCODE Processing Pipeline 06ace6373b4324b29c9ecfe7f0dcf980 https://www.encodeproject.org/files/ENCFF125SQT/@@download/ENCFF125SQT.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF327IZI bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 342876976 ENCODE Processing Pipeline f942fd48616cd31a26809a254b04628e https://www.encodeproject.org/files/ENCFF327IZI/@@download/ENCFF327IZI.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF123VNC bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 6673423 ENCODE Processing Pipeline 178687de91cc2f51c8b916badafb1d31 https://www.encodeproject.org/files/ENCFF123VNC/@@download/ENCFF123VNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF319WEO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125SQT 1447767 ENCODE Processing Pipeline 7bde17976017b6eadd8f08b817907d93 https://www.encodeproject.org/files/ENCFF319WEO/@@download/ENCFF319WEO.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF390HIZ bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 453052490 ENCODE Processing Pipeline cfaed3a81261fd28ab3688dc32b2264f https://www.encodeproject.org/files/ENCFF390HIZ/@@download/ENCFF390HIZ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF077ABG bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF123VNC 11027968 ENCODE Processing Pipeline 0648900dc691225468dd438f9e76ca53 https://www.encodeproject.org/files/ENCFF077ABG/@@download/ENCFF077ABG.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF663DKN bed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF123VNC, ENCFF252XCG, ENCFF845PQC 589547 ENCODE Processing Pipeline 738c927bb59185d6c24d9ec6c22b66d3 https://www.encodeproject.org/files/ENCFF663DKN/@@download/ENCFF663DKN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF002UPS bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 731222796 ENCODE Processing Pipeline 7b1fbe5d0bb0f643d0dd16f5200ad7a4 https://www.encodeproject.org/files/ENCFF002UPS/@@download/ENCFF002UPS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF475UZP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF663DKN 1336587 ENCODE Processing Pipeline 2548a9b034b66810bde70275f05d6e73 https://www.encodeproject.org/files/ENCFF475UZP/@@download/ENCFF475UZP.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF845PQC bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 6537897 ENCODE Processing Pipeline 2322b3a07590c5f56743de44dbba206a https://www.encodeproject.org/files/ENCFF845PQC/@@download/ENCFF845PQC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF252XCG bed narrowPeak peaks and background as input for IDR ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 6674976 ENCODE Processing Pipeline 1da817a9f29fdef374d269500f28904d https://www.encodeproject.org/files/ENCFF252XCG/@@download/ENCFF252XCG.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF304NDL fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 1 ENCFF340BKZ 3564248745 Michael Snyder, Stanford 28e8df7f1f317070a45465da2b486826 SRA:SRR5111639 https://www.encodeproject.org/files/ENCFF304NDL/@@download/ENCFF304NDL.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF340BKZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 2 ENCFF304NDL 3746946044 Michael Snyder, Stanford c95eb750b72e88def16ba6a52ad2e0e2 SRA:SRR5111639 https://www.encodeproject.org/files/ENCFF340BKZ/@@download/ENCFF340BKZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF422BBZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 1 ENCFF580NZZ 2732596467 Michael Snyder, Stanford cb1bd9b49b47a50aa1246629f87d6522 SRA:SRR5111640 https://www.encodeproject.org/files/ENCFF422BBZ/@@download/ENCFF422BBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF580NZZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 2 ENCFF422BBZ 2877124263 Michael Snyder, Stanford 34420731f45b0adbbc5776461f1f7497 SRA:SRR5111640 https://www.encodeproject.org/files/ENCFF580NZZ/@@download/ENCFF580NZZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF512BNR bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF807MUK 5433850483 ENCODE Processing Pipeline 15ee84115fa6eac641e0527a489a2811 https://www.encodeproject.org/files/ENCFF512BNR/@@download/ENCFF512BNR.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF963OQY bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF807MUK 6688972818 ENCODE Processing Pipeline 7741430399c5ae53d0f8a618ea441f35 https://www.encodeproject.org/files/ENCFF963OQY/@@download/ENCFF963OQY.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF815FYD bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF807MUK 4101068676 ENCODE Processing Pipeline d6e45c0abeae8112ecd06c314cc502e2 https://www.encodeproject.org/files/ENCFF815FYD/@@download/ENCFF815FYD.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF481IFQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF807MUK 4586915517 ENCODE Processing Pipeline ddc63373fe0197c5615cfcfa20221ee7 https://www.encodeproject.org/files/ENCFF481IFQ/@@download/ENCFF481IFQ.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF661JYJ bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF643CGH 5439539044 ENCODE Processing Pipeline 494ab8b1402d9be06e7ee1b269b8856f https://www.encodeproject.org/files/ENCFF661JYJ/@@download/ENCFF661JYJ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF782ZPU bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF643CGH 6692065626 ENCODE Processing Pipeline 061749757fd51cdb78163b8d8666437d https://www.encodeproject.org/files/ENCFF782ZPU/@@download/ENCFF782ZPU.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF023IKP bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF643CGH 4106654466 ENCODE Processing Pipeline f9ebbbcabc2701ffb33ad4fe945927c4 https://www.encodeproject.org/files/ENCFF023IKP/@@download/ENCFF023IKP.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF653RTQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF643CGH 4592822778 ENCODE Processing Pipeline cf534a9065e4a802973599976131fe47 https://www.encodeproject.org/files/ENCFF653RTQ/@@download/ENCFF653RTQ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF046QXW bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 1336138473 ENCODE Processing Pipeline 4736a80f744c096e6adf303503da5d38 https://www.encodeproject.org/files/ENCFF046QXW/@@download/ENCFF046QXW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF514HMG bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 1896287144 ENCODE Processing Pipeline 3a01b92230444d06eed031cbd39443a8 https://www.encodeproject.org/files/ENCFF514HMG/@@download/ENCFF514HMG.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF673CUS bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 1250876538 ENCODE Processing Pipeline c4cf781c425fddbc0909da2c40c53472 https://www.encodeproject.org/files/ENCFF673CUS/@@download/ENCFF673CUS.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF952BKH bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 1821743431 ENCODE Processing Pipeline 8a1370be126ecbc652663b9bedaf908a https://www.encodeproject.org/files/ENCFF952BKH/@@download/ENCFF952BKH.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF721LCX bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 2009785840 ENCODE Processing Pipeline 0382b6ab60fbd6b305d3a70bd47c99c7 https://www.encodeproject.org/files/ENCFF721LCX/@@download/ENCFF721LCX.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF750RLG bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 6571545 ENCODE Processing Pipeline bea068a63020c13ee0950c030cb5635b https://www.encodeproject.org/files/ENCFF750RLG/@@download/ENCFF750RLG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF294JNU bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 2407820621 ENCODE Processing Pipeline a21d484a26ecda267700d718f47c43be https://www.encodeproject.org/files/ENCFF294JNU/@@download/ENCFF294JNU.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF745VJD bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 7096973 ENCODE Processing Pipeline 1de25e381d9cb311ae2a79eba3509b86 https://www.encodeproject.org/files/ENCFF745VJD/@@download/ENCFF745VJD.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF460IKB bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF750RLG 11262681 ENCODE Processing Pipeline d2954a911e66a429fb15e4935fd45c2c https://www.encodeproject.org/files/ENCFF460IKB/@@download/ENCFF460IKB.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF672LDK bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 7257732 ENCODE Processing Pipeline ae43a8e2ee26003357f9c8d6432076da https://www.encodeproject.org/files/ENCFF672LDK/@@download/ENCFF672LDK.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF688WHP bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF745VJD 13370668 ENCODE Processing Pipeline 7da05df2e0e41fada6b883827c4f89a6 https://www.encodeproject.org/files/ENCFF688WHP/@@download/ENCFF688WHP.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF065ZEM bigBed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF592LPO 612463 ENCODE Processing Pipeline 5964e5f494425f8bcb14ce69a82f7c72 https://www.encodeproject.org/files/ENCFF065ZEM/@@download/ENCFF065ZEM.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF592LPO bed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF672LDK, ENCFF745VJD, ENCFF750RLG 261426 ENCODE Processing Pipeline d0430fdc40b6e6ea019f6c117e53ee12 https://www.encodeproject.org/files/ENCFF592LPO/@@download/ENCFF592LPO.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF833UEG bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF672LDK 13329688 ENCODE Processing Pipeline 22a6e5e11dbdbfe1b1fdfebb273aabd3 https://www.encodeproject.org/files/ENCFF833UEG/@@download/ENCFF833UEG.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF446BHY bed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF672LDK, ENCFF745VJD, ENCFF750RLG 189874 ENCODE Processing Pipeline 6de752387a4a3e437359cda79bd6b542 https://www.encodeproject.org/files/ENCFF446BHY/@@download/ENCFF446BHY.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF740HYF bigBed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF446BHY 402423 ENCODE Processing Pipeline d8db29a556ad65ef632e6be5bc9d896d https://www.encodeproject.org/files/ENCFF740HYF/@@download/ENCFF740HYF.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF317WYD bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF159QMJ 11250396 ENCODE Processing Pipeline 2f79ea780b3f9f8bb7f47be28cd14259 https://www.encodeproject.org/files/ENCFF317WYD/@@download/ENCFF317WYD.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF792OHO bigBed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF626WXN 403991 ENCODE Processing Pipeline 69e5416f8544dfc1d5dbede0f4e5db10 https://www.encodeproject.org/files/ENCFF792OHO/@@download/ENCFF792OHO.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF809PXE bed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF089KCX, ENCFF159QMJ, ENCFF827JSS 261069 ENCODE Processing Pipeline 571eea3e172f1eee41776e6ff5fbad01 https://www.encodeproject.org/files/ENCFF809PXE/@@download/ENCFF809PXE.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF008YBN bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 2312547682 ENCODE Processing Pipeline 5b6e488b44124a5ada5a53fa79915b17 https://www.encodeproject.org/files/ENCFF008YBN/@@download/ENCFF008YBN.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF159QMJ bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 6568482 ENCODE Processing Pipeline 6778d83ba7f736f01fff4506f941afd1 https://www.encodeproject.org/files/ENCFF159QMJ/@@download/ENCFF159QMJ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF639WZS bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 1214620775 ENCODE Processing Pipeline f5c8e4840ce94410c3415e234effcc11 https://www.encodeproject.org/files/ENCFF639WZS/@@download/ENCFF639WZS.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF085IIW bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 1700451950 ENCODE Processing Pipeline c1e6e0f674e9ab0f450162be20eda04b https://www.encodeproject.org/files/ENCFF085IIW/@@download/ENCFF085IIW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF956CKZ bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 1845869303 ENCODE Processing Pipeline 7266944716f9bf0b5147e424afcbe375 https://www.encodeproject.org/files/ENCFF956CKZ/@@download/ENCFF956CKZ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF827JSS bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 7108656 ENCODE Processing Pipeline 0b0252f04721227207518ddd1fbdc92a https://www.encodeproject.org/files/ENCFF827JSS/@@download/ENCFF827JSS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF144VLA bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF089KCX 13322887 ENCODE Processing Pipeline a649ac1303bcb414b5c5d58b49b462c7 https://www.encodeproject.org/files/ENCFF144VLA/@@download/ENCFF144VLA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF626WXN bed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF089KCX, ENCFF159QMJ, ENCFF827JSS 191063 ENCODE Processing Pipeline 1ec7ef06113c481e7e9e8992ed4ad8e6 https://www.encodeproject.org/files/ENCFF626WXN/@@download/ENCFF626WXN.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF882WHJ bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 1325806290 ENCODE Processing Pipeline dcf0622134f484b01e0856558a261932 https://www.encodeproject.org/files/ENCFF882WHJ/@@download/ENCFF882WHJ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF407PLR bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 2404249113 ENCODE Processing Pipeline 265cee00ec03846d17c28d068847fdf4 https://www.encodeproject.org/files/ENCFF407PLR/@@download/ENCFF407PLR.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF089KCX bed narrowPeak peaks and background as input for IDR ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 7251615 ENCODE Processing Pipeline e6b5f7cfb5867356270963c874bb0ec6 https://www.encodeproject.org/files/ENCFF089KCX/@@download/ENCFF089KCX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF311HTV bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF827JSS 13377398 ENCODE Processing Pipeline 8f44118f4a655f350fc544d4dfb5b01d https://www.encodeproject.org/files/ENCFF311HTV/@@download/ENCFF311HTV.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF682CZS bigBed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF809PXE 611344 ENCODE Processing Pipeline db5e22d90b3f8c3e99106d2719f6e162 https://www.encodeproject.org/files/ENCFF682CZS/@@download/ENCFF682CZS.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF000WAJ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 1 572644177 Michael Snyder, Stanford 0c929d2fa8d48a537fc2225478706e8e https://www.encodeproject.org/files/ENCFF000WAJ/@@download/ENCFF000WAJ.bam hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms missing derived_from ENCFF000WAL bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE ENCFF001VEX 2492457 Michael Snyder, Stanford 90e7caa6cbe032fa87218f1ab24c976b https://www.encodeproject.org/files/ENCFF000WAL/@@download/ENCFF000WAL.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF000WAM fastq reads ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 1 36 single-ended 1016216557 Michael Snyder, Stanford 694eaba93868553e365487637eef3989 https://www.encodeproject.org/files/ENCFF000WAM/@@download/ENCFF000WAM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWD/ released borderline replicate concordance, inconsistent control read length, low read length, low read depth, inconsistent platforms ENCFF000WAO fastq reads ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 1 36 single-ended 871456909 Michael Snyder, Stanford 172e0c965fcfef070f75580921c8cc60 https://www.encodeproject.org/files/ENCFF000WAO/@@download/ENCFF000WAO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWK/ released borderline replicate concordance, low read length, inconsistent control read length, low read depth, inconsistent platforms ENCFF000WAQ bigWig signal ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 391973984 Michael Snyder, Stanford c4d8e955e151485865a1ed1f5ac8b1cc https://www.encodeproject.org/files/ENCFF000WAQ/@@download/ENCFF000WAQ.bigWig hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms missing derived_from ENCFF000WAR bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 1 510736714 Michael Snyder, Stanford 46dd1386d8e1eeaa5816c651b95c7e5f https://www.encodeproject.org/files/ENCFF000WAR/@@download/ENCFF000WAR.bam hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms missing derived_from ENCFF001VEX bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 938420 Michael Snyder, Stanford bc6ddcbb18190cff6f65d8894d6a87ab https://www.encodeproject.org/files/ENCFF001VEX/@@download/ENCFF001VEX.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms missing derived_from ENCFF002CPE bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 442586 ENCODE Consortium Analysis Working Group d418a64ce8855426c0c7e266c4950479 https://www.encodeproject.org/files/ENCFF002CPE/@@download/ENCFF002CPE.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms missing derived_from ENCFF222OWH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE ENCFF002CPE 1085773 ENCODE Consortium f0ce899e1e97ba896f9caf6cb3e175f1 https://www.encodeproject.org/files/ENCFF222OWH/@@download/ENCFF222OWH.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF273YVM bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF643CGH 890697978 ENCODE Processing Pipeline 4f9ec9a24977c50a81c472d3edcd662b https://www.encodeproject.org/files/ENCFF273YVM/@@download/ENCFF273YVM.bam GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF036AJQ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF643CGH 634258317 ENCODE Processing Pipeline 02ea338e0c40710b93cf233413b7234d https://www.encodeproject.org/files/ENCFF036AJQ/@@download/ENCFF036AJQ.bam GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF497KQT bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF643CGH 1015406783 ENCODE Processing Pipeline 5aec592bd5eddd1589fd901f34cf98f3 https://www.encodeproject.org/files/ENCFF497KQT/@@download/ENCFF497KQT.bam GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF881THF bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF643CGH 561255333 ENCODE Processing Pipeline 1266844959aedf1186736d96e558d651 https://www.encodeproject.org/files/ENCFF881THF/@@download/ENCFF881THF.bam GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF410XFU bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF807MUK 887458167 ENCODE Processing Pipeline c920e68c9df01c4d358482c5af868e50 https://www.encodeproject.org/files/ENCFF410XFU/@@download/ENCFF410XFU.bam hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF344EBI bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF807MUK 1011744454 ENCODE Processing Pipeline 383aecb57d8e8d493f03250dadb27da7 https://www.encodeproject.org/files/ENCFF344EBI/@@download/ENCFF344EBI.bam hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF728IVZ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF807MUK 561302040 ENCODE Processing Pipeline 81f456d2496187eb154be06a79a01f15 https://www.encodeproject.org/files/ENCFF728IVZ/@@download/ENCFF728IVZ.bam hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF258NYC bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF807MUK 633682275 ENCODE Processing Pipeline 60318c2c1e13c8e8cb460e5c70f27dbc https://www.encodeproject.org/files/ENCFF258NYC/@@download/ENCFF258NYC.bam hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF253KOV bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 180314189 ENCODE Processing Pipeline 0424f99405ac566fc5a93d05be855d06 https://www.encodeproject.org/files/ENCFF253KOV/@@download/ENCFF253KOV.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF050DSI bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 283200540 ENCODE Processing Pipeline 8837970644e8cc57377a87416babca34 https://www.encodeproject.org/files/ENCFF050DSI/@@download/ENCFF050DSI.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF133VDP bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 75932531 ENCODE Processing Pipeline 69d4b5c3278417de7d2cd14a04d91cc9 https://www.encodeproject.org/files/ENCFF133VDP/@@download/ENCFF133VDP.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF643UFI bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 169148707 ENCODE Processing Pipeline 1584c494dc7ebc32072a834bf3ae9814 https://www.encodeproject.org/files/ENCFF643UFI/@@download/ENCFF643UFI.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF209OKB bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 217647279 ENCODE Processing Pipeline cdb932dc69952622826b537234b786a6 https://www.encodeproject.org/files/ENCFF209OKB/@@download/ENCFF209OKB.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF820BXH bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 481028174 ENCODE Processing Pipeline aa7b26a6c183fbb7837ca50e2b96c02b https://www.encodeproject.org/files/ENCFF820BXH/@@download/ENCFF820BXH.bigWig hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF270RLY bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 4424277 ENCODE Processing Pipeline bc7a9f5c798d838ca235739f1184e385 https://www.encodeproject.org/files/ENCFF270RLY/@@download/ENCFF270RLY.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF429WXC bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 3915798 ENCODE Processing Pipeline f6653f3d0a01e5ae0da9a2c116519085 https://www.encodeproject.org/files/ENCFF429WXC/@@download/ENCFF429WXC.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF446MPR bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 4900558 ENCODE Processing Pipeline ff7eb6846ecdf64e44eb1fa3d3cf8b20 https://www.encodeproject.org/files/ENCFF446MPR/@@download/ENCFF446MPR.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF705QDM bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF270RLY 10340138 ENCODE Processing Pipeline c5d0bdc57e6d47b2c09b5dc76710a957 https://www.encodeproject.org/files/ENCFF705QDM/@@download/ENCFF705QDM.bigBed hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF146ZTB bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF429WXC 9776286 ENCODE Processing Pipeline cb4d8649376026a74e4ab07b743580df https://www.encodeproject.org/files/ENCFF146ZTB/@@download/ENCFF146ZTB.bigBed hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF208CRK bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF446MPR 10989046 ENCODE Processing Pipeline 5a84ddffa6bbc2faadd8db24b39f6818 https://www.encodeproject.org/files/ENCFF208CRK/@@download/ENCFF208CRK.bigBed hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF476RII bed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF270RLY, ENCFF429WXC, ENCFF446MPR 248701 ENCODE Processing Pipeline 7c0cba51afaaf1e44285065e4dc7fb29 https://www.encodeproject.org/files/ENCFF476RII/@@download/ENCFF476RII.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF332HKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF476RII 545214 ENCODE Processing Pipeline 2b3c30ea8ff8a4dfa5598113a67afd56 https://www.encodeproject.org/files/ENCFF332HKJ/@@download/ENCFF332HKJ.bigBed hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF366ADQ bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 218876338 ENCODE Processing Pipeline d54a672bc98f538bf95d747b80eaf1b0 https://www.encodeproject.org/files/ENCFF366ADQ/@@download/ENCFF366ADQ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF229TNP bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB 10986441 ENCODE Processing Pipeline 462a955426ac3cb74ad65ec72b052983 https://www.encodeproject.org/files/ENCFF229TNP/@@download/ENCFF229TNP.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF222XPQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF270RLY, ENCFF429WXC, ENCFF446MPR 352738 ENCODE Processing Pipeline d8641f789549a9b495f93565e6cf3260 https://www.encodeproject.org/files/ENCFF222XPQ/@@download/ENCFF222XPQ.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF833BVH bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 180374821 ENCODE Processing Pipeline 072d84dfa3f46d35762aca2f916da5e5 https://www.encodeproject.org/files/ENCFF833BVH/@@download/ENCFF833BVH.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF917GLI bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF127KCF 9770516 ENCODE Processing Pipeline c1b92a2d864acf9eabff86dab6f60b11 https://www.encodeproject.org/files/ENCFF917GLI/@@download/ENCFF917GLI.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF696CNS bed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB, ENCFF127KCF, ENCFF419RSJ, ENCFF445UCE 251090 ENCODE Processing Pipeline b28ac6ee98ff3943844b29e5697ed725 https://www.encodeproject.org/files/ENCFF696CNS/@@download/ENCFF696CNS.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF166QFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF222XPQ 723586 ENCODE Processing Pipeline 3e729ca5c5e2a29fa5c4d1a27c923791 https://www.encodeproject.org/files/ENCFF166QFI/@@download/ENCFF166QFI.bigBed hg19 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF883EYG bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 75914852 ENCODE Processing Pipeline ab581c49b828c9bad5ba45c523a5bffe https://www.encodeproject.org/files/ENCFF883EYG/@@download/ENCFF883EYG.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF313UYC bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF445UCE 10388546 ENCODE Processing Pipeline 8603433d3e510a609601aa9c4b0a2e9b https://www.encodeproject.org/files/ENCFF313UYC/@@download/ENCFF313UYC.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF119GUM bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 283050655 ENCODE Processing Pipeline d3ef543352490b90a04b8f8f6026f8d0 https://www.encodeproject.org/files/ENCFF119GUM/@@download/ENCFF119GUM.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF591KAQ bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 169215852 ENCODE Processing Pipeline bd87f592c851e5f1706c97c2e1e7c538 https://www.encodeproject.org/files/ENCFF591KAQ/@@download/ENCFF591KAQ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF977NLF bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 480870277 ENCODE Processing Pipeline 43e52745d5c772215c3f5142cb9e64ee https://www.encodeproject.org/files/ENCFF977NLF/@@download/ENCFF977NLF.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF771MIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF696CNS 548916 ENCODE Processing Pipeline 184c958f4eef165e08b292e5dd7646c8 https://www.encodeproject.org/files/ENCFF771MIM/@@download/ENCFF771MIM.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF865UDD bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB, ENCFF127KCF, ENCFF419RSJ, ENCFF445UCE 347179 ENCODE Processing Pipeline 80e030ed5a3ffc5232fc1fceee48f045 https://www.encodeproject.org/files/ENCFF865UDD/@@download/ENCFF865UDD.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF445UCE bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 4468895 ENCODE Processing Pipeline 26db79197902a6d9f94b6544c6e0986d https://www.encodeproject.org/files/ENCFF445UCE/@@download/ENCFF445UCE.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF127KCF bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 3915179 ENCODE Processing Pipeline d52ca514f3c9fb40c69ae229e3d030ac https://www.encodeproject.org/files/ENCFF127KCF/@@download/ENCFF127KCF.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF114IQB bed narrowPeak peaks and background as input for IDR ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 4898284 ENCODE Processing Pipeline 8ba9a4e49b9e20e6b1dd1a56df08bf54 https://www.encodeproject.org/files/ENCFF114IQB/@@download/ENCFF114IQB.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF905BUH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF865UDD 712554 ENCODE Processing Pipeline 7098abf08e2bfb3487b03b4d14a7bd01 https://www.encodeproject.org/files/ENCFF905BUH/@@download/ENCFF905BUH.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, inconsistent platforms ENCFF858IJQ bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF804QYW, ENCFF807MUK 6347199713 ENCODE Processing Pipeline 5610501d0d24943e9a362f8db5f6523d https://www.encodeproject.org/files/ENCFF858IJQ/@@download/ENCFF858IJQ.bam hg19 released mild to moderate bottlenecking ENCFF656OGK bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF807MUK 5693896030 ENCODE Processing Pipeline c187ad21c2a9028271ca8dc2782a62d8 https://www.encodeproject.org/files/ENCFF656OGK/@@download/ENCFF656OGK.bam hg19 released mild to moderate bottlenecking ENCFF021DVV fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF804QYW 2974814577 Michael Snyder, Stanford acdb9d21d06cd2797e6658cc40855f63 SRA:SRR5111759 https://www.encodeproject.org/files/ENCFF021DVV/@@download/ENCFF021DVV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF804QYW fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF021DVV 3060076536 Michael Snyder, Stanford d0f917270f189b54cea0dbd8e189d89b SRA:SRR5111759 https://www.encodeproject.org/files/ENCFF804QYW/@@download/ENCFF804QYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF203MXC fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF454FRC 2676622899 Michael Snyder, Stanford 4e1e3bfe0cf0d8f407eb3a94c5c7d260 SRA:SRR5111758 https://www.encodeproject.org/files/ENCFF203MXC/@@download/ENCFF203MXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF454FRC fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF203MXC 2761437683 Michael Snyder, Stanford 8d61ef1e66603af5c6b4654936670895 SRA:SRR5111758 https://www.encodeproject.org/files/ENCFF454FRC/@@download/ENCFF454FRC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF069GGB bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF203MXC, ENCFF454FRC, ENCFF807MUK 4262454189 ENCODE Processing Pipeline 8c0b481c238b9a79302e218d2f32c71f https://www.encodeproject.org/files/ENCFF069GGB/@@download/ENCFF069GGB.bam hg19 released mild to moderate bottlenecking ENCFF076TDR bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF021DVV, ENCFF804QYW, ENCFF807MUK 4838364981 ENCODE Processing Pipeline ada73eb224f97ed0790302ce10bc42e1 https://www.encodeproject.org/files/ENCFF076TDR/@@download/ENCFF076TDR.bam hg19 released mild to moderate bottlenecking ENCFF153IFP bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 1247637528 ENCODE Processing Pipeline 072953dd4cb1bc53f976b7d215519f18 https://www.encodeproject.org/files/ENCFF153IFP/@@download/ENCFF153IFP.bigWig hg19 released mild to moderate bottlenecking ENCFF657OOK bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 6949366 ENCODE Processing Pipeline 0b82578fd9aa8ce31b245ccb03ab8274 https://www.encodeproject.org/files/ENCFF657OOK/@@download/ENCFF657OOK.bed.gz hg19 released mild to moderate bottlenecking ENCFF888JKW bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 1200146734 ENCODE Processing Pipeline 29e9ef92a88bc97320f73509acff63a9 https://www.encodeproject.org/files/ENCFF888JKW/@@download/ENCFF888JKW.bigWig hg19 released mild to moderate bottlenecking ENCFF796WLJ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 1500265363 ENCODE Processing Pipeline a7a59324cb378be78245589bcd391245 https://www.encodeproject.org/files/ENCFF796WLJ/@@download/ENCFF796WLJ.bigWig hg19 released mild to moderate bottlenecking ENCFF638CVU bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 1008790409 ENCODE Processing Pipeline f2b0ea0abc46ffd8f86fdc545573400f https://www.encodeproject.org/files/ENCFF638CVU/@@download/ENCFF638CVU.bigWig hg19 released mild to moderate bottlenecking ENCFF336TIR bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 1139862217 ENCODE Processing Pipeline e663bc8b30e47ff372f6179b54300257 https://www.encodeproject.org/files/ENCFF336TIR/@@download/ENCFF336TIR.bigWig hg19 released mild to moderate bottlenecking ENCFF966NTL bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 6885626 ENCODE Processing Pipeline 95251238f90a925144754906d4a9c29d https://www.encodeproject.org/files/ENCFF966NTL/@@download/ENCFF966NTL.bed.gz hg19 released mild to moderate bottlenecking ENCFF942NGM bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 7035532 ENCODE Processing Pipeline b9e98ecd521665b98c679800dc788ac3 https://www.encodeproject.org/files/ENCFF942NGM/@@download/ENCFF942NGM.bed.gz hg19 released mild to moderate bottlenecking ENCFF319DUB bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 1827129700 ENCODE Processing Pipeline dee0650123f1079f90eb665def5a13c2 https://www.encodeproject.org/files/ENCFF319DUB/@@download/ENCFF319DUB.bigWig hg19 released mild to moderate bottlenecking ENCFF172EZZ bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF942NGM 12245077 ENCODE Processing Pipeline e142301e12dbf65b18ade02ee6fa0857 https://www.encodeproject.org/files/ENCFF172EZZ/@@download/ENCFF172EZZ.bigBed hg19 released mild to moderate bottlenecking ENCFF251PIF bigBed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF887NAI 1508972 ENCODE Processing Pipeline ad3af6c275637c2dadbec20b8d8c0da9 https://www.encodeproject.org/files/ENCFF251PIF/@@download/ENCFF251PIF.bigBed hg19 released mild to moderate bottlenecking mismatched status ENCFF881VZH bed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF657OOK, ENCFF942NGM, ENCFF966NTL 755519 ENCODE Processing Pipeline 891a679537433a7e0e320f60a84f3079 https://www.encodeproject.org/files/ENCFF881VZH/@@download/ENCFF881VZH.bed.gz hg19 released mild to moderate bottlenecking ENCFF710DNL bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF657OOK 12497687 ENCODE Processing Pipeline d499e329e0b675283f277c177d7042f4 https://www.encodeproject.org/files/ENCFF710DNL/@@download/ENCFF710DNL.bigBed hg19 released mild to moderate bottlenecking ENCFF297ZZR bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF966NTL 12295823 ENCODE Processing Pipeline d31a259ee0215087f4647d870f059966 https://www.encodeproject.org/files/ENCFF297ZZR/@@download/ENCFF297ZZR.bigBed hg19 released mild to moderate bottlenecking ENCFF161QAL bigBed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF734FHY 1512672 ENCODE Processing Pipeline ceb988b2e04d9289e88653817bb620f6 https://www.encodeproject.org/files/ENCFF161QAL/@@download/ENCFF161QAL.bigBed hg19 released mild to moderate bottlenecking mismatched status ENCFF173KPE bed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF657OOK, ENCFF942NGM, ENCFF966NTL 759703 ENCODE Processing Pipeline 7f99322160804166f10ede1034658a12 https://www.encodeproject.org/files/ENCFF173KPE/@@download/ENCFF173KPE.bed.gz hg19 released mild to moderate bottlenecking ENCFF639QMC bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF643CGH 5693030576 ENCODE Processing Pipeline 80f51d40f82e4298467300e352a914e6 https://www.encodeproject.org/files/ENCFF639QMC/@@download/ENCFF639QMC.bam GRCh38 released mild to moderate bottlenecking ENCFF204VIF bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF643CGH, ENCFF804QYW 6346792267 ENCODE Processing Pipeline 813a7bf0d0e128a97ff97f3b0fbe0c3c https://www.encodeproject.org/files/ENCFF204VIF/@@download/ENCFF204VIF.bam GRCh38 released mild to moderate bottlenecking ENCFF982QKE bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF643CGH 4270284184 ENCODE Processing Pipeline 91f2523d14916c138d5da7cebcc4aaed https://www.encodeproject.org/files/ENCFF982QKE/@@download/ENCFF982QKE.bam GRCh38 released mild to moderate bottlenecking ENCFF665BYT bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF643CGH, ENCFF804QYW 4846167445 ENCODE Processing Pipeline a8784721c7300f42a4a1a8f61dc17f0b https://www.encodeproject.org/files/ENCFF665BYT/@@download/ENCFF665BYT.bam GRCh38 released mild to moderate bottlenecking ENCFF725SIQ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 1366412710 ENCODE Processing Pipeline 416df7b8842c6bc550ceb41cd82cdd0b https://www.encodeproject.org/files/ENCFF725SIQ/@@download/ENCFF725SIQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF311HUZ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 1202164658 ENCODE Processing Pipeline 8d12c6f554eba60df7e912682b06a6f1 https://www.encodeproject.org/files/ENCFF311HUZ/@@download/ENCFF311HUZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF734KGV bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 1503029501 ENCODE Processing Pipeline fb900c214444b366925b2bace5b1cdb4 https://www.encodeproject.org/files/ENCFF734KGV/@@download/ENCFF734KGV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF123MHD bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 1245204397 ENCODE Processing Pipeline 80002efb5f9237304fefa3fda03f97d8 https://www.encodeproject.org/files/ENCFF123MHD/@@download/ENCFF123MHD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF250VFO bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 1146932359 ENCODE Processing Pipeline efd135978bc6161ea7e6d95e9658fb64 https://www.encodeproject.org/files/ENCFF250VFO/@@download/ENCFF250VFO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF984HLU bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 1831947647 ENCODE Processing Pipeline 897f91f30857010a02f9a69a3fa1e322 https://www.encodeproject.org/files/ENCFF984HLU/@@download/ENCFF984HLU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF500XME bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 6856349 ENCODE Processing Pipeline 59e17e148585e98a623387e1f468f89f https://www.encodeproject.org/files/ENCFF500XME/@@download/ENCFF500XME.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF691SCS bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF500XME 12419620 ENCODE Processing Pipeline 8f0cd0fb26a040bfeb99396680d3deae https://www.encodeproject.org/files/ENCFF691SCS/@@download/ENCFF691SCS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF916DGH bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 6980732 ENCODE Processing Pipeline 8707ff06b8275b948578d4e725c1cb04 https://www.encodeproject.org/files/ENCFF916DGH/@@download/ENCFF916DGH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF580PSH bed narrowPeak peaks and background as input for IDR ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 6721025 ENCODE Processing Pipeline 788a4f8d3b35face5800889ee78d191a https://www.encodeproject.org/files/ENCFF580PSH/@@download/ENCFF580PSH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF206LYB bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF580PSH 12120290 ENCODE Processing Pipeline 2176f4154128a65ea619704e84192545 https://www.encodeproject.org/files/ENCFF206LYB/@@download/ENCFF206LYB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF809LON bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF916DGH 12181560 ENCODE Processing Pipeline 27c7af3bfe0f795ceafebe3eebcfe659 https://www.encodeproject.org/files/ENCFF809LON/@@download/ENCFF809LON.bigBed GRCh38 released mild to moderate bottlenecking ENCFF394FTH bed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF500XME, ENCFF580PSH, ENCFF916DGH 756337 ENCODE Processing Pipeline 18516e8c315e49429e1051ee4c986e83 https://www.encodeproject.org/files/ENCFF394FTH/@@download/ENCFF394FTH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF331KLG bigBed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF394FTH 1505177 ENCODE Processing Pipeline 3a27491addeac4e1bd3dbd72288d9a56 https://www.encodeproject.org/files/ENCFF331KLG/@@download/ENCFF331KLG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF125MEN bed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF500XME, ENCFF580PSH, ENCFF916DGH 755304 ENCODE Processing Pipeline 2610e6b2eef4a3d55bd50b7413b5f26b https://www.encodeproject.org/files/ENCFF125MEN/@@download/ENCFF125MEN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF864GFC bigBed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF125MEN 1514430 ENCODE Processing Pipeline 22917fd6cfc348b2b93746f04efffe44 https://www.encodeproject.org/files/ENCFF864GFC/@@download/ENCFF864GFC.bigBed GRCh38 released mild to moderate bottlenecking ENCFF259DTT bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF807MUK, ENCFF863JNZ 4636749100 ENCODE Processing Pipeline 5b4db8b4ee7c625f06720c31dbef0c6e https://www.encodeproject.org/files/ENCFF259DTT/@@download/ENCFF259DTT.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF805VTA bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF807MUK, ENCFF866JOT 4986970936 ENCODE Processing Pipeline 733c8193672c3ddf8e18b04126c452eb https://www.encodeproject.org/files/ENCFF805VTA/@@download/ENCFF805VTA.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF138BLI fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF866JOT 2267118801 Michael Snyder, Stanford a5fcaa49aaa5ef956d97b79a31796fb4 https://www.encodeproject.org/files/ENCFF138BLI/@@download/ENCFF138BLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF863JNZ fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF367FUJ 2060027303 Michael Snyder, Stanford 30aeec7ba9fb3a72e59e34bf9d4f5c84 https://www.encodeproject.org/files/ENCFF863JNZ/@@download/ENCFF863JNZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF367FUJ fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF863JNZ 2116943047 Michael Snyder, Stanford c17f697ecad755234a8bee508d77c41c https://www.encodeproject.org/files/ENCFF367FUJ/@@download/ENCFF367FUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF866JOT fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF138BLI 2338438281 Michael Snyder, Stanford 27bc8d31916e8ab932f671c4b6aa5a20 https://www.encodeproject.org/files/ENCFF866JOT/@@download/ENCFF866JOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF225FNQ bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF807MUK, ENCFF866JOT 3738465864 ENCODE Processing Pipeline 6d50dbe56ab8f13c0195e385b7f2ef58 https://www.encodeproject.org/files/ENCFF225FNQ/@@download/ENCFF225FNQ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF095GKP bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF807MUK, ENCFF863JNZ 3679269961 ENCODE Processing Pipeline accc8bed08877240fe8448e86d853e78 https://www.encodeproject.org/files/ENCFF095GKP/@@download/ENCFF095GKP.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF143QSX bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 1024343631 ENCODE Processing Pipeline 042cff17a23dcbd34a7b4cf1c3292049 https://www.encodeproject.org/files/ENCFF143QSX/@@download/ENCFF143QSX.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF641VNZ bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 1131624184 ENCODE Processing Pipeline 91d652f498ac5ca69bf88915af58c05a https://www.encodeproject.org/files/ENCFF641VNZ/@@download/ENCFF641VNZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF379DEM bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 1751738223 ENCODE Processing Pipeline 61fafdc2fe3dda0915425f8d8d3bee52 https://www.encodeproject.org/files/ENCFF379DEM/@@download/ENCFF379DEM.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF611EJA bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 1056488094 ENCODE Processing Pipeline 9518fa5656f486ec506238c3a13f49a1 https://www.encodeproject.org/files/ENCFF611EJA/@@download/ENCFF611EJA.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF706PMR bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 1055220069 ENCODE Processing Pipeline 3194d8baeb909c86de468e90512f32b6 https://www.encodeproject.org/files/ENCFF706PMR/@@download/ENCFF706PMR.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF167WPQ bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 2002297645 ENCODE Processing Pipeline 82b2a22bc33ebc173a0ef934bb4b44b7 https://www.encodeproject.org/files/ENCFF167WPQ/@@download/ENCFF167WPQ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF471IVB bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 6201438 ENCODE Processing Pipeline 14c7c83fca1383b1ca696bb3b1e6943d https://www.encodeproject.org/files/ENCFF471IVB/@@download/ENCFF471IVB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF054XUN bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 6240427 ENCODE Processing Pipeline b8c9e196eda9c2502b0db38eb8279690 https://www.encodeproject.org/files/ENCFF054XUN/@@download/ENCFF054XUN.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF717MTX bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 7115395 ENCODE Processing Pipeline c0892878dfa8c186ac45614c84a16b7b https://www.encodeproject.org/files/ENCFF717MTX/@@download/ENCFF717MTX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF403MRA bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF471IVB 11099099 ENCODE Processing Pipeline 0f583e1a23939b0f7153bc90bd7b3583 https://www.encodeproject.org/files/ENCFF403MRA/@@download/ENCFF403MRA.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF406QVK bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF054XUN 11161317 ENCODE Processing Pipeline d0876072ece4c26621408242395170fa https://www.encodeproject.org/files/ENCFF406QVK/@@download/ENCFF406QVK.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF481WFT bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF717MTX 13072255 ENCODE Processing Pipeline c28617719ddfaf5f85fd037cf96c108d https://www.encodeproject.org/files/ENCFF481WFT/@@download/ENCFF481WFT.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF273GJL bed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054XUN, ENCFF471IVB, ENCFF717MTX 80672 ENCODE Processing Pipeline aeee6f6408a77cc93ed670d82e8f8ddc https://www.encodeproject.org/files/ENCFF273GJL/@@download/ENCFF273GJL.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF074KEB bigBed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF273GJL 181439 ENCODE Processing Pipeline bb1572f6ec86a2edd22ee3bcf5893123 https://www.encodeproject.org/files/ENCFF074KEB/@@download/ENCFF074KEB.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF711OSR bed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054XUN, ENCFF471IVB, ENCFF717MTX 110065 ENCODE Processing Pipeline f1f2426bc50072ce5eede047ee65a239 https://www.encodeproject.org/files/ENCFF711OSR/@@download/ENCFF711OSR.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF159CTX bigBed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF711OSR 268866 ENCODE Processing Pipeline 4000d7f66884ddff89f4ba14196c6418 https://www.encodeproject.org/files/ENCFF159CTX/@@download/ENCFF159CTX.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF003VDC bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF643CGH, ENCFF866JOT 4989937472 ENCODE Processing Pipeline 1877b4e04bcd9d8c10993fa272dbe7f7 https://www.encodeproject.org/files/ENCFF003VDC/@@download/ENCFF003VDC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF957HBR bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF643CGH, ENCFF863JNZ 4642293472 ENCODE Processing Pipeline bda81d569353d7ad82c478944148a34f https://www.encodeproject.org/files/ENCFF957HBR/@@download/ENCFF957HBR.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF215GEB bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF643CGH, ENCFF863JNZ 3689350877 ENCODE Processing Pipeline a3cd87e6a7c58de423f8a0563170a25a https://www.encodeproject.org/files/ENCFF215GEB/@@download/ENCFF215GEB.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF311VCV bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF643CGH, ENCFF866JOT 3746619077 ENCODE Processing Pipeline 1b45843bc56e79c6eb97856fc5d6258d https://www.encodeproject.org/files/ENCFF311VCV/@@download/ENCFF311VCV.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF355NFK bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 1027721759 ENCODE Processing Pipeline 8a7e7a1ef95728b416e5457969e67cd7 https://www.encodeproject.org/files/ENCFF355NFK/@@download/ENCFF355NFK.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF521TNA bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 1022038617 ENCODE Processing Pipeline 7efb485f584a5faf40cac523a557c4f0 https://www.encodeproject.org/files/ENCFF521TNA/@@download/ENCFF521TNA.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509EUD bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 1837936651 ENCODE Processing Pipeline 112ae9bbed63dbbf233ea364dd9159e3 https://www.encodeproject.org/files/ENCFF509EUD/@@download/ENCFF509EUD.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF395YNP bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 1058283960 ENCODE Processing Pipeline d56ee879cb46d9fa446081ff0ec588ca https://www.encodeproject.org/files/ENCFF395YNP/@@download/ENCFF395YNP.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF139RPC bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 1033727109 ENCODE Processing Pipeline fb1b248a11046e82dc85fb46d5f57100 https://www.encodeproject.org/files/ENCFF139RPC/@@download/ENCFF139RPC.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF028VTH bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 1997087922 ENCODE Processing Pipeline aaa84d1ab5936fcb2ffd9fc9e6b16214 https://www.encodeproject.org/files/ENCFF028VTH/@@download/ENCFF028VTH.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF774APE bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF032QRF 11181643 ENCODE Processing Pipeline efe56a123907ef3e5a540c5b2d651e49 https://www.encodeproject.org/files/ENCFF774APE/@@download/ENCFF774APE.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF032QRF bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 6105812 ENCODE Processing Pipeline 312cc52fa4610345ef50f87fc1cae0e8 https://www.encodeproject.org/files/ENCFF032QRF/@@download/ENCFF032QRF.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF498UTH bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 7078020 ENCODE Processing Pipeline 33d06f1b3094c55b4681f18401db1b15 https://www.encodeproject.org/files/ENCFF498UTH/@@download/ENCFF498UTH.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF424GGP bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF498UTH 13096499 ENCODE Processing Pipeline fba14cfee3d0ff1863f9c424cc003c8f https://www.encodeproject.org/files/ENCFF424GGP/@@download/ENCFF424GGP.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF344ITO bed narrowPeak peaks and background as input for IDR ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 6027699 ENCODE Processing Pipeline 0db50bc90d4c15119184aada64320838 https://www.encodeproject.org/files/ENCFF344ITO/@@download/ENCFF344ITO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF394KMU bed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032QRF, ENCFF344ITO, ENCFF419RSJ, ENCFF498UTH 83353 ENCODE Processing Pipeline 36f5212bae683bbdfb2245e4f09c506b https://www.encodeproject.org/files/ENCFF394KMU/@@download/ENCFF394KMU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF328SQU bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF344ITO 11103302 ENCODE Processing Pipeline 448f16ada56a24d2207db8dfeee2b824 https://www.encodeproject.org/files/ENCFF328SQU/@@download/ENCFF328SQU.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF035GFS bed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032QRF, ENCFF344ITO, ENCFF419RSJ, ENCFF498UTH 112660 ENCODE Processing Pipeline ae14215287f40afa26b8176c3213bb81 https://www.encodeproject.org/files/ENCFF035GFS/@@download/ENCFF035GFS.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF442WUA bigBed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF394KMU 187444 ENCODE Processing Pipeline 69d1fff1208baada352bf36c83825378 https://www.encodeproject.org/files/ENCFF442WUA/@@download/ENCFF442WUA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931HNY bigBed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF035GFS 274933 ENCODE Processing Pipeline a530b821094188417eb995e8dfb45bd9 https://www.encodeproject.org/files/ENCFF931HNY/@@download/ENCFF931HNY.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF574HXK fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF997CNG 2966153565 Michael Snyder, Stanford 6a06f7c5cd2a3d007281bc651582a7ab SRA:SRR6214004 https://www.encodeproject.org/files/ENCFF574HXK/@@download/ENCFF574HXK.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF393WEP fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF364TAC 10703684588 Michael Snyder, Stanford 00c8ead9796cfc312093f272beb8c3ab SRA:SRR6214003 https://www.encodeproject.org/files/ENCFF393WEP/@@download/ENCFF393WEP.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF364TAC fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF393WEP 9706621516 Michael Snyder, Stanford ba535bdf91fc237d0fd588b16436b8ad SRA:SRR6214003 https://www.encodeproject.org/files/ENCFF364TAC/@@download/ENCFF364TAC.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF997CNG fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF574HXK 2770651140 Michael Snyder, Stanford 521a0238c23a7e57cf63a0d58362c1f0 SRA:SRR6214004 https://www.encodeproject.org/files/ENCFF997CNG/@@download/ENCFF997CNG.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF669BBE bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF643CGH, ENCFF997CNG 5616182539 ENCODE Processing Pipeline 561169504f71a6e1202a023c851a08c9 https://www.encodeproject.org/files/ENCFF669BBE/@@download/ENCFF669BBE.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF143HZI bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF807MUK, ENCFF997CNG 5609774869 ENCODE Processing Pipeline 5fb14378dea84b53a0403bd60677757f https://www.encodeproject.org/files/ENCFF143HZI/@@download/ENCFF143HZI.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF125XMV bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF643CGH, ENCFF997CNG 4625664645 ENCODE Processing Pipeline 2e467893318bd737504f24fb931be556 https://www.encodeproject.org/files/ENCFF125XMV/@@download/ENCFF125XMV.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF170QWA bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF807MUK, ENCFF997CNG 4616663173 ENCODE Processing Pipeline 236dfb01a7419459a8377ccb76194abd https://www.encodeproject.org/files/ENCFF170QWA/@@download/ENCFF170QWA.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF772KBH bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF807MUK 17551856651 ENCODE Processing Pipeline 0faf26a028b2104b598cb481d3bd37b2 https://www.encodeproject.org/files/ENCFF772KBH/@@download/ENCFF772KBH.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF843IFG bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF643CGH 17549410945 ENCODE Processing Pipeline 6670cfb65c7ef7b18ebd6b1c40a0f57d https://www.encodeproject.org/files/ENCFF843IFG/@@download/ENCFF843IFG.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF201IJO bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF807MUK 10117411036 ENCODE Processing Pipeline 05aa35d552cdf7d91ef33ddcfa810892 https://www.encodeproject.org/files/ENCFF201IJO/@@download/ENCFF201IJO.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF673WGB bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF643CGH 10141771274 ENCODE Processing Pipeline aadfcc6c7f220fa226e753025676bb0e https://www.encodeproject.org/files/ENCFF673WGB/@@download/ENCFF673WGB.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF445BQP bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 1731263943 ENCODE Processing Pipeline 9968892b9c273421a84c7ed8aaeeea87 https://www.encodeproject.org/files/ENCFF445BQP/@@download/ENCFF445BQP.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF841VKX bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 1415635572 ENCODE Processing Pipeline 140cea640a9b25eef4b75dbb28cd7279 https://www.encodeproject.org/files/ENCFF841VKX/@@download/ENCFF841VKX.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF285PEI bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 2356673772 ENCODE Processing Pipeline 8b1a7da1e4c26a2f4a8a03d0163e027d https://www.encodeproject.org/files/ENCFF285PEI/@@download/ENCFF285PEI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF177ZOK bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 1833709955 ENCODE Processing Pipeline 2e63aeb7e57a6721c8a6ad34c4816e62 https://www.encodeproject.org/files/ENCFF177ZOK/@@download/ENCFF177ZOK.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF325EYN bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 2232153364 ENCODE Processing Pipeline 38539a1d2de6edffce788708566781ed https://www.encodeproject.org/files/ENCFF325EYN/@@download/ENCFF325EYN.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF614WVD bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 4227232754 ENCODE Processing Pipeline c25a7c2ccab7f7a7f245c8cdffde3ab8 https://www.encodeproject.org/files/ENCFF614WVD/@@download/ENCFF614WVD.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF051TIF bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 7062450 ENCODE Processing Pipeline 26e4a6ff82473d0dadb19b73c1e7630d https://www.encodeproject.org/files/ENCFF051TIF/@@download/ENCFF051TIF.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF709QYA bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 7405219 ENCODE Processing Pipeline 3461cf86ddf87102f93c7e8dde2d45ae https://www.encodeproject.org/files/ENCFF709QYA/@@download/ENCFF709QYA.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF521MOQ bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 7395184 ENCODE Processing Pipeline 1ebec1f600f12af9de9ed39cdbed390a https://www.encodeproject.org/files/ENCFF521MOQ/@@download/ENCFF521MOQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF904BAQ bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF051TIF 13029672 ENCODE Processing Pipeline 59322637171dc7855914f7053293f6d8 https://www.encodeproject.org/files/ENCFF904BAQ/@@download/ENCFF904BAQ.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF300ONT bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF709QYA 13271719 ENCODE Processing Pipeline a061f95cb45036fc125c7fcd62b56f7d https://www.encodeproject.org/files/ENCFF300ONT/@@download/ENCFF300ONT.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF358FOS bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF521MOQ 13231575 ENCODE Processing Pipeline 7ebb1df6ec6eb95edd94ab55f30f7e01 https://www.encodeproject.org/files/ENCFF358FOS/@@download/ENCFF358FOS.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF127UTH bed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051TIF, ENCFF419RSJ, ENCFF521MOQ, ENCFF709QYA 721522 ENCODE Processing Pipeline 2fe153ffd707a1ed10cacf9cda22781a https://www.encodeproject.org/files/ENCFF127UTH/@@download/ENCFF127UTH.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF176GUV bigBed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF127UTH 1597781 ENCODE Processing Pipeline 8acbda001505699e6caef7a4f1c6e426 https://www.encodeproject.org/files/ENCFF176GUV/@@download/ENCFF176GUV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF088OLI bed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051TIF, ENCFF419RSJ, ENCFF521MOQ, ENCFF709QYA 977890 ENCODE Processing Pipeline 48aaa7925c53fa72dd9d5aa7f287f429 https://www.encodeproject.org/files/ENCFF088OLI/@@download/ENCFF088OLI.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF762AZY bigBed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF088OLI 2053909 ENCODE Processing Pipeline c41b2a6243be9c878b03003a730d449a https://www.encodeproject.org/files/ENCFF762AZY/@@download/ENCFF762AZY.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF015LAS bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 7316173 ENCODE Processing Pipeline 8c6f4b18382e89e40b904d11de6d5975 https://www.encodeproject.org/files/ENCFF015LAS/@@download/ENCFF015LAS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF983QJN bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF121LDE 13261631 ENCODE Processing Pipeline 42c7510a3677f87a38e2923fe1deb0fc https://www.encodeproject.org/files/ENCFF983QJN/@@download/ENCFF983QJN.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF325SVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF653MIQ 2011614 ENCODE Processing Pipeline 007b5e774be2a501ba17d415011eb632 https://www.encodeproject.org/files/ENCFF325SVJ/@@download/ENCFF325SVJ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF489GBB bed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF015LAS, ENCFF121LDE, ENCFF658QMA 697788 ENCODE Processing Pipeline ab9e42a12785cb026b7005d3c593bef2 https://www.encodeproject.org/files/ENCFF489GBB/@@download/ENCFF489GBB.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF983GKW bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 1848425647 ENCODE Processing Pipeline 692d9992cfb74806906ac28beb24ce63 https://www.encodeproject.org/files/ENCFF983GKW/@@download/ENCFF983GKW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF658QMA bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 7059027 ENCODE Processing Pipeline 388cc423bf31f1db19df68636bb8fb5e https://www.encodeproject.org/files/ENCFF658QMA/@@download/ENCFF658QMA.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF912JSW bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF015LAS 13136256 ENCODE Processing Pipeline 2c46b71e213fafc644258939f9b00074 https://www.encodeproject.org/files/ENCFF912JSW/@@download/ENCFF912JSW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF448CPD bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 2317115625 ENCODE Processing Pipeline 5e0de95426ca8556d0f56aff10fbcb13 https://www.encodeproject.org/files/ENCFF448CPD/@@download/ENCFF448CPD.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF942IMP bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 4172110183 ENCODE Processing Pipeline 55a5bb30f07f478d3f1174b3e0e09120 https://www.encodeproject.org/files/ENCFF942IMP/@@download/ENCFF942IMP.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF205UJI bigBed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF489GBB 1561292 ENCODE Processing Pipeline 6efbd254e94d82f7eb6a2ba8b75c64f0 https://www.encodeproject.org/files/ENCFF205UJI/@@download/ENCFF205UJI.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF121LDE bed narrowPeak peaks and background as input for IDR ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 7399387 ENCODE Processing Pipeline 9592a949848414b2593e1a787435abe9 https://www.encodeproject.org/files/ENCFF121LDE/@@download/ENCFF121LDE.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF505ZUY bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF658QMA 13025781 ENCODE Processing Pipeline 92d75b259caf5a37c8219503fc7d4e2b https://www.encodeproject.org/files/ENCFF505ZUY/@@download/ENCFF505ZUY.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF653MIQ bed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF015LAS, ENCFF121LDE, ENCFF658QMA 951360 ENCODE Processing Pipeline 1f78aaf05fbfc895c4ff5d21f048885f https://www.encodeproject.org/files/ENCFF653MIQ/@@download/ENCFF653MIQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF129JYL bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 1715714145 ENCODE Processing Pipeline 0ce8cbf7816e785f8c6ca188cc9488e7 https://www.encodeproject.org/files/ENCFF129JYL/@@download/ENCFF129JYL.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF086OWH bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 1427446901 ENCODE Processing Pipeline 028626c705ce10bde229b05f61187d91 https://www.encodeproject.org/files/ENCFF086OWH/@@download/ENCFF086OWH.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF990ZVT bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 2239133652 ENCODE Processing Pipeline 4b14589c396577f3e5832f384fb174b1 https://www.encodeproject.org/files/ENCFF990ZVT/@@download/ENCFF990ZVT.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF000WFS bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFQ 1312942 Michael Snyder, Stanford d35d43b7e74c0cfada1367abcc84929f https://www.encodeproject.org/files/ENCFF000WFS/@@download/ENCFF000WFS.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFT bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGC 353383232 Michael Snyder, Stanford eb9bb94825abb7056bf7b4fbf2c41e3c https://www.encodeproject.org/files/ENCFF000WFT/@@download/ENCFF000WFT.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFU bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGB 389409573 Michael Snyder, Stanford 2cf347183509f1fc992eb5244a967a84 https://www.encodeproject.org/files/ENCFF000WFU/@@download/ENCFF000WFU.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFV bigWig signal ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 275074771 Michael Snyder, Stanford 488a3db6090797192909c56ce6d6a38f https://www.encodeproject.org/files/ENCFF000WFV/@@download/ENCFF000WFV.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000WGB fastq reads ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 927420117 Michael Snyder, Stanford a880093f71a3f2df43994d2fb8e56d2b https://www.encodeproject.org/files/ENCFF000WGB/@@download/ENCFF000WGB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WGC fastq reads ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 639283255 Michael Snyder, Stanford 1800b38ad67e1c481ee5c0c76d28b8c9 https://www.encodeproject.org/files/ENCFF000WGC/@@download/ENCFF000WGC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001VFQ bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 564777 Michael Snyder, Stanford ee698b150407219608fa06fcbc8a5480 https://www.encodeproject.org/files/ENCFF001VFQ/@@download/ENCFF001VFQ.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CPT bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 226110 ENCODE Consortium Analysis Working Group 7f1d056d70a7f7880977c4d9e1d0521e https://www.encodeproject.org/files/ENCFF002CPT/@@download/ENCFF002CPT.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF879EUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPT 587535 ENCODE Consortium afb38b7eb63196e89acf2e169fc593c1 https://www.encodeproject.org/files/ENCFF879EUS/@@download/ENCFF879EUS.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF379OHG bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF643CGH 1009792543 ENCODE Processing Pipeline ae091cd67b8631711b2466ad2d735002 https://www.encodeproject.org/files/ENCFF379OHG/@@download/ENCFF379OHG.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF496UYU bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF643CGH 725430239 ENCODE Processing Pipeline 716260b87d7881719986ddc98f25d0d4 https://www.encodeproject.org/files/ENCFF496UYU/@@download/ENCFF496UYU.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF341YTC bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF643CGH 443728558 ENCODE Processing Pipeline e14ff5d5f936321c348dc2871a7fa12b https://www.encodeproject.org/files/ENCFF341YTC/@@download/ENCFF341YTC.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF713SUL bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF643CGH 608228873 ENCODE Processing Pipeline fcc15f81d8f368767b7ae2f1fe731313 https://www.encodeproject.org/files/ENCFF713SUL/@@download/ENCFF713SUL.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF854MYU bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF807MUK 722938861 ENCODE Processing Pipeline b6d56980e2903dea91fde81b1f19b7e3 https://www.encodeproject.org/files/ENCFF854MYU/@@download/ENCFF854MYU.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF848OVF bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF807MUK 1005766499 ENCODE Processing Pipeline 2c60a3b3b7752e989a0907739d57bf98 https://www.encodeproject.org/files/ENCFF848OVF/@@download/ENCFF848OVF.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF270QLE bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF807MUK 608017062 ENCODE Processing Pipeline 9c8c2ca9db9aca016e9ad628d0dc4f32 https://www.encodeproject.org/files/ENCFF270QLE/@@download/ENCFF270QLE.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF078MCO bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF807MUK 443226439 ENCODE Processing Pipeline bd85f3c6f86f8dc1636864c4231b5d18 https://www.encodeproject.org/files/ENCFF078MCO/@@download/ENCFF078MCO.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF346HJU bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 169338027 ENCODE Processing Pipeline 63329b65ecec9cacd276be21759bd4fd https://www.encodeproject.org/files/ENCFF346HJU/@@download/ENCFF346HJU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF707LQO bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 169354703 ENCODE Processing Pipeline ea218060af65b08c589be01250476094 https://www.encodeproject.org/files/ENCFF707LQO/@@download/ENCFF707LQO.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF092ZPG bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 240257044 ENCODE Processing Pipeline 76a886d824c1a9a55cfada05b8c63175 https://www.encodeproject.org/files/ENCFF092ZPG/@@download/ENCFF092ZPG.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF013UKD bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 78483566 ENCODE Processing Pipeline 8d8e318a95d497e62bce98572585640e https://www.encodeproject.org/files/ENCFF013UKD/@@download/ENCFF013UKD.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF512MJA bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 241041300 ENCODE Processing Pipeline 078d4391618fbd0e3f15d8d515148565 https://www.encodeproject.org/files/ENCFF512MJA/@@download/ENCFF512MJA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF466BAG bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023RDZ 7353513 ENCODE Processing Pipeline a230801d152aed5abb91e21d80b284df https://www.encodeproject.org/files/ENCFF466BAG/@@download/ENCFF466BAG.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF372DRC bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF023RDZ, ENCFF485PHV, ENCFF548FHH 139589 ENCODE Processing Pipeline c0e28ff4091658d0e94ba0a69b97e145 https://www.encodeproject.org/files/ENCFF372DRC/@@download/ENCFF372DRC.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF574JPD bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 4013610 ENCODE Processing Pipeline e2f44b0d5fe916853a043d4ba58874ea https://www.encodeproject.org/files/ENCFF574JPD/@@download/ENCFF574JPD.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF524IZA bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 3609934 ENCODE Processing Pipeline 968cfadd5399a493b1aacf3e6ea5576e https://www.encodeproject.org/files/ENCFF524IZA/@@download/ENCFF524IZA.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF103KIV bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 176278031 ENCODE Processing Pipeline da6a0af2d788e902c7c772a511ce5fd0 https://www.encodeproject.org/files/ENCFF103KIV/@@download/ENCFF103KIV.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF722ZEV bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 4469302 ENCODE Processing Pipeline de714876c528de28d4f8b66400e29f5e https://www.encodeproject.org/files/ENCFF722ZEV/@@download/ENCFF722ZEV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF136TKS bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 78308735 ENCODE Processing Pipeline 19bec4db6577c4283a3030d545190501 https://www.encodeproject.org/files/ENCFF136TKS/@@download/ENCFF136TKS.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF830RBU bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 397208079 ENCODE Processing Pipeline 990d266d669b5f17947655833aca5131 https://www.encodeproject.org/files/ENCFF830RBU/@@download/ENCFF830RBU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF619KFP bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 169570535 ENCODE Processing Pipeline ff6ebd3d3802de87b54cbf359b5056c0 https://www.encodeproject.org/files/ENCFF619KFP/@@download/ENCFF619KFP.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF123SXV bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF485PHV 9947380 ENCODE Processing Pipeline 97014b1495540c70742850ef59e5612c https://www.encodeproject.org/files/ENCFF123SXV/@@download/ENCFF123SXV.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF722VEM bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548FHH 10672728 ENCODE Processing Pipeline 797ee3efc3248cd1a7e257a1f5fd9975 https://www.encodeproject.org/files/ENCFF722VEM/@@download/ENCFF722VEM.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF109ZHE bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 406672246 ENCODE Processing Pipeline 89f75e0326090408d0605de652463e18 https://www.encodeproject.org/files/ENCFF109ZHE/@@download/ENCFF109ZHE.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF867VZN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF372DRC 321242 ENCODE Processing Pipeline c9a909ca97a28e8169aba94f29644f1a https://www.encodeproject.org/files/ENCFF867VZN/@@download/ENCFF867VZN.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF009EEI bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF574JPD 9947352 ENCODE Processing Pipeline 0c204536389b65bfde21ab2d9869671e https://www.encodeproject.org/files/ENCFF009EEI/@@download/ENCFF009EEI.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF797TWM bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 176598621 ENCODE Processing Pipeline ddd2d3452086ce84fadc72b240640dd1 https://www.encodeproject.org/files/ENCFF797TWM/@@download/ENCFF797TWM.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF485PHV bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 4013789 ENCODE Processing Pipeline c37fe4f4f26f43a140fc952141d07512 https://www.encodeproject.org/files/ENCFF485PHV/@@download/ENCFF485PHV.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF023RDZ bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 3606433 ENCODE Processing Pipeline d4414b68ef54e6ffdfa4e70ddf3c888f https://www.encodeproject.org/files/ENCFF023RDZ/@@download/ENCFF023RDZ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF548FHH bed narrowPeak peaks and background as input for IDR ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 4467033 ENCODE Processing Pipeline d6a627cc65d924f2bb01da5c38b46535 https://www.encodeproject.org/files/ENCFF548FHH/@@download/ENCFF548FHH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF924YCU bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 169906548 ENCODE Processing Pipeline 8b80599dca1b4776cbe3ab046d0217a8 https://www.encodeproject.org/files/ENCFF924YCU/@@download/ENCFF924YCU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF970CZH bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF524IZA 7353122 ENCODE Processing Pipeline 00e746742141dde4e2dde3b432930b7e https://www.encodeproject.org/files/ENCFF970CZH/@@download/ENCFF970CZH.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF514SWA bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF524IZA, ENCFF574JPD, ENCFF722ZEV 141802 ENCODE Processing Pipeline 91ba3493788101a1e408a079c1820399 https://www.encodeproject.org/files/ENCFF514SWA/@@download/ENCFF514SWA.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF657DWO bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF722ZEV 10675432 ENCODE Processing Pipeline efb16ba2f0ad555a656e6cb33f4cd475 https://www.encodeproject.org/files/ENCFF657DWO/@@download/ENCFF657DWO.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF202CTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF514SWA 324566 ENCODE Processing Pipeline b2f67109b77da46dfd41fba3b359e057 https://www.encodeproject.org/files/ENCFF202CTX/@@download/ENCFF202CTX.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OHG bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHX 857253736 Richard Myers, HAIB 9d06a8a18678d00b989c46c85d9adf4c https://www.encodeproject.org/files/ENCFF000OHG/@@download/ENCFF000OHG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHI bigBed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZQ 360911 Richard Myers, HAIB 88aa8d04ba61ab96167a25000af1cf83 https://www.encodeproject.org/files/ENCFF000OHI/@@download/ENCFF000OHI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHJ bigBed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZR 328906 Richard Myers, HAIB 0c5fc5db7b507d905faee8c055704b75 https://www.encodeproject.org/files/ENCFF000OHJ/@@download/ENCFF000OHJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHK bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHV 722791068 Richard Myers, HAIB 3f0ca6483a9925d4c13359ecdb505ad4 https://www.encodeproject.org/files/ENCFF000OHK/@@download/ENCFF000OHK.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHL bigWig raw signal ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 12368001 Richard Myers, HAIB c6a69939a090bc7367080078bcad3bc8 https://www.encodeproject.org/files/ENCFF000OHL/@@download/ENCFF000OHL.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OHM bigWig raw signal ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 10422337 Richard Myers, HAIB 5940434134376e375279ef900e57a20f https://www.encodeproject.org/files/ENCFF000OHM/@@download/ENCFF000OHM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OHV fastq reads ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 704105796 Richard Myers, HAIB 6b1b4cda0ca7cdc0aa0dd97ea68fbff9 https://www.encodeproject.org/files/ENCFF000OHV/@@download/ENCFF000OHV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000OHX fastq reads ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 950797356 Richard Myers, HAIB 058d428bcac9e7124d94b50baa6bea08 https://www.encodeproject.org/files/ENCFF000OHX/@@download/ENCFF000OHX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF001TZQ bed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 170495 Richard Myers, HAIB caf28f513f044baf77fb13ce7985654f https://www.encodeproject.org/files/ENCFF001TZQ/@@download/ENCFF001TZQ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TZR bed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 148037 Richard Myers, HAIB 192ea16a9b3ac2b137f57e97666809c2 https://www.encodeproject.org/files/ENCFF001TZR/@@download/ENCFF001TZR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CID bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 45250 ENCODE Consortium Analysis Working Group aba4f859bb9144077368e422a7f84b12 https://www.encodeproject.org/files/ENCFF002CID/@@download/ENCFF002CID.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF923EPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CID 137556 ENCODE Consortium 1fb322ff76ff08a786fa228e42abe6ba https://www.encodeproject.org/files/ENCFF923EPQ/@@download/ENCFF923EPQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF166QSR bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF643CGH 929974444 ENCODE Processing Pipeline f88a37454bbf9c0331b6612a75624700 https://www.encodeproject.org/files/ENCFF166QSR/@@download/ENCFF166QSR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF432KDE bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF643CGH 587624345 ENCODE Processing Pipeline 83353cb14ef5ed7590bb03fdf694855d https://www.encodeproject.org/files/ENCFF432KDE/@@download/ENCFF432KDE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF772LSQ bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF643CGH 1211716453 ENCODE Processing Pipeline c19c4d1681c45069a19022ae1ecb48e6 https://www.encodeproject.org/files/ENCFF772LSQ/@@download/ENCFF772LSQ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF004PAV bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF643CGH 665357834 ENCODE Processing Pipeline 5bba72717136ba0787037aebd79baf51 https://www.encodeproject.org/files/ENCFF004PAV/@@download/ENCFF004PAV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF776FZQ bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF807MUK 1207851335 ENCODE Processing Pipeline 94a9e54cd2acb8bb272b318c42311e7e https://www.encodeproject.org/files/ENCFF776FZQ/@@download/ENCFF776FZQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF963NKM bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF807MUK 661608896 ENCODE Processing Pipeline facc4d813825f77f913b714408132973 https://www.encodeproject.org/files/ENCFF963NKM/@@download/ENCFF963NKM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF643YAD bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF807MUK 927286303 ENCODE Processing Pipeline caad1d5e4194a699b8a95d34150ddef6 https://www.encodeproject.org/files/ENCFF643YAD/@@download/ENCFF643YAD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF918QFL bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF807MUK 582838291 ENCODE Processing Pipeline 67bf4eb9e268e82fad1efb8a7faf1306 https://www.encodeproject.org/files/ENCFF918QFL/@@download/ENCFF918QFL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF998BZC bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 419685046 ENCODE Processing Pipeline 4a8eb47b0b9fbb619af36ae9d0f80214 https://www.encodeproject.org/files/ENCFF998BZC/@@download/ENCFF998BZC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF723QNL bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 462918110 ENCODE Processing Pipeline a6110a5b91d5584ed51ba8a52bc59142 https://www.encodeproject.org/files/ENCFF723QNL/@@download/ENCFF723QNL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF947VFN bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 829450172 ENCODE Processing Pipeline bd02f885d10bdf41c833603f0c9921ae https://www.encodeproject.org/files/ENCFF947VFN/@@download/ENCFF947VFN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF974VXQ bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 301892186 ENCODE Processing Pipeline d0433ae3cb57a6eb32294597de73fb7f https://www.encodeproject.org/files/ENCFF974VXQ/@@download/ENCFF974VXQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF578SJM bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 4263863 ENCODE Processing Pipeline bf911a62287e93421e8cc38e32f989dc https://www.encodeproject.org/files/ENCFF578SJM/@@download/ENCFF578SJM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF881WWO bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 273343054 ENCODE Processing Pipeline 43b525b8b0724f996abbb0840a13cdf7 https://www.encodeproject.org/files/ENCFF881WWO/@@download/ENCFF881WWO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF806TFL bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 660584397 ENCODE Processing Pipeline 37654ffe4880b4a2d3cfed6317ff9b5c https://www.encodeproject.org/files/ENCFF806TFL/@@download/ENCFF806TFL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF226JMI bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 5412960 ENCODE Processing Pipeline 804833b3b0caacc2119a2724ca636ad1 https://www.encodeproject.org/files/ENCFF226JMI/@@download/ENCFF226JMI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF447FTH bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF467OPY 10427038 ENCODE Processing Pipeline 7571c725d9b137ea14adf58b48c987d0 https://www.encodeproject.org/files/ENCFF447FTH/@@download/ENCFF447FTH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF773OQL bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI, ENCFF419RSJ, ENCFF467OPY, ENCFF578SJM 49529 ENCODE Processing Pipeline 4d7c3c256c2860a663dfe7f237fd63f8 https://www.encodeproject.org/files/ENCFF773OQL/@@download/ENCFF773OQL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF205WFG bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI 11444570 ENCODE Processing Pipeline bb8e699fca3e8f6e24e7dff6a15673e7 https://www.encodeproject.org/files/ENCFF205WFG/@@download/ENCFF205WFG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF526PMD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF362VQO 137892 ENCODE Processing Pipeline d57479660d9af335d6bc18d9949c3401 https://www.encodeproject.org/files/ENCFF526PMD/@@download/ENCFF526PMD.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF467OPY bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 4165986 ENCODE Processing Pipeline 02c5dcb0d2aceafc8ccfeaa643243ea0 https://www.encodeproject.org/files/ENCFF467OPY/@@download/ENCFF467OPY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF259MRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF773OQL 144722 ENCODE Processing Pipeline 4ddddd7cd060122e59ac0b0cfdd5dd8a https://www.encodeproject.org/files/ENCFF259MRH/@@download/ENCFF259MRH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF323YMP bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF578SJM 10677637 ENCODE Processing Pipeline 03a28ed7f742b4d689331b11192c7600 https://www.encodeproject.org/files/ENCFF323YMP/@@download/ENCFF323YMP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF362VQO bed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI, ENCFF419RSJ, ENCFF467OPY, ENCFF578SJM 45318 ENCODE Processing Pipeline b4fddbeb12701b92d2c3b7cc11a047ee https://www.encodeproject.org/files/ENCFF362VQO/@@download/ENCFF362VQO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF583RJI bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 400385668 ENCODE Processing Pipeline f3a07b3a92793f4f776fe100324e4def https://www.encodeproject.org/files/ENCFF583RJI/@@download/ENCFF583RJI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF897KAB bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 381048446 ENCODE Processing Pipeline c0f4cf45e262be7a4ab5b672e2973541 https://www.encodeproject.org/files/ENCFF897KAB/@@download/ENCFF897KAB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF952NQI bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 300660016 ENCODE Processing Pipeline 9aa45bf545de214ebcfe1e4a44aa8194 https://www.encodeproject.org/files/ENCFF952NQI/@@download/ENCFF952NQI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF266PKW bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 752669237 ENCODE Processing Pipeline de847224690a6ac9d89103e94dbbbe7f https://www.encodeproject.org/files/ENCFF266PKW/@@download/ENCFF266PKW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF004KXC bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 271725967 ENCODE Processing Pipeline f2875d877a676567c4db83f4492326f5 https://www.encodeproject.org/files/ENCFF004KXC/@@download/ENCFF004KXC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF759UFB bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 657563977 ENCODE Processing Pipeline 8b1b73c5aeea843f655d2b9691f40f99 https://www.encodeproject.org/files/ENCFF759UFB/@@download/ENCFF759UFB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF957BXT bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141WKX 11453613 ENCODE Processing Pipeline a84e66319fedbc40f28ef55033835cac https://www.encodeproject.org/files/ENCFF957BXT/@@download/ENCFF957BXT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF394CWJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF141WKX, ENCFF372FLW, ENCFF891ZCM 44775 ENCODE Processing Pipeline 1e1ef221679ba28140cc4103b3ab4bb6 https://www.encodeproject.org/files/ENCFF394CWJ/@@download/ENCFF394CWJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF891ZCM bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 4235005 ENCODE Processing Pipeline f22938eb636e024178ae8d1a523c9bab https://www.encodeproject.org/files/ENCFF891ZCM/@@download/ENCFF891ZCM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF910DKV bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF891ZCM 10638220 ENCODE Processing Pipeline aeb280da298bbb1937b2b275719934fb https://www.encodeproject.org/files/ENCFF910DKV/@@download/ENCFF910DKV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF452YIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF394CWJ 112782 ENCODE Processing Pipeline ad74dcf195eaaef8263f8e30a81fe597 https://www.encodeproject.org/files/ENCFF452YIQ/@@download/ENCFF452YIQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF681RVL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648COV 107547 ENCODE Processing Pipeline c8cef345a266f231f20ecff676bb400a https://www.encodeproject.org/files/ENCFF681RVL/@@download/ENCFF681RVL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF141WKX bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 5377613 ENCODE Processing Pipeline deeaa07c0681b2f00069168f3d91fe27 https://www.encodeproject.org/files/ENCFF141WKX/@@download/ENCFF141WKX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF648COV bed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF141WKX, ENCFF372FLW, ENCFF891ZCM 40655 ENCODE Processing Pipeline 75b0cf33b49ff1b3fbc32d729881412b https://www.encodeproject.org/files/ENCFF648COV/@@download/ENCFF648COV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF372FLW bed narrowPeak peaks and background as input for IDR ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 4179024 ENCODE Processing Pipeline 4e94740b37fb8b99b7d324eb3fb75d00 https://www.encodeproject.org/files/ENCFF372FLW/@@download/ENCFF372FLW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF565YJZ bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372FLW 10506117 ENCODE Processing Pipeline 712b798e92731196bdd2d630b3db1c8b https://www.encodeproject.org/files/ENCFF565YJZ/@@download/ENCFF565YJZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NRS bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NSE 1478712395 Richard Myers, HAIB 40ef1959e8fff00edfd7fae5ff4e464f https://www.encodeproject.org/files/ENCFF000NRS/@@download/ENCFF000NRS.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRT bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NSG 1558188304 Richard Myers, HAIB 28a42898cb247fa44be5a54f01b3600b https://www.encodeproject.org/files/ENCFF000NRT/@@download/ENCFF000NRT.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRU bigBed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TWB 985177 Richard Myers, HAIB 4a7b14554242dfbf3dfc4d9e97bba1f8 https://www.encodeproject.org/files/ENCFF000NRU/@@download/ENCFF000NRU.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRV bigBed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TWC 581798 Richard Myers, HAIB d70b65de5d43da0234713593f0139475 https://www.encodeproject.org/files/ENCFF000NRV/@@download/ENCFF000NRV.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRW bigWig raw signal ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 27511896 Richard Myers, HAIB 2ebfbdd5858399d28339db6d4e993fe7 https://www.encodeproject.org/files/ENCFF000NRW/@@download/ENCFF000NRW.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NRY bigWig raw signal ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 22525504 Richard Myers, HAIB 00f38df47be48ace7d8f047950dbaa81 https://www.encodeproject.org/files/ENCFF000NRY/@@download/ENCFF000NRY.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NSE fastq reads ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1489076519 Richard Myers, HAIB 63f4f27aec8f104430b804d34ecf73ac https://www.encodeproject.org/files/ENCFF000NSE/@@download/ENCFF000NSE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NSG fastq reads ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1540251647 Richard Myers, HAIB 4866c289fa70e483301e527a8cc4c768 https://www.encodeproject.org/files/ENCFF000NSG/@@download/ENCFF000NSG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TWB bed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 543464 Richard Myers, HAIB 23c296db0b763b75ed21f16a9a22b78b https://www.encodeproject.org/files/ENCFF001TWB/@@download/ENCFF001TWB.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TWC bed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 367570 Richard Myers, HAIB e46b31c8f63ef32e90ae45d9f5a8c13e https://www.encodeproject.org/files/ENCFF001TWC/@@download/ENCFF001TWC.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CGO bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 464879 ENCODE Consortium Analysis Working Group 1c594a9c3fd87caf450bd1216464eb34 https://www.encodeproject.org/files/ENCFF002CGO/@@download/ENCFF002CGO.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF944NMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGO 951701 ENCODE Consortium c3af6578e92ab746e599cb41cf183729 https://www.encodeproject.org/files/ENCFF944NMB/@@download/ENCFF944NMB.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF994ZHD bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF643CGH 1074310346 ENCODE Processing Pipeline a8fa51659f44a13ea021bf995201ae86 https://www.encodeproject.org/files/ENCFF994ZHD/@@download/ENCFF994ZHD.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF125CKC bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF643CGH 1686985344 ENCODE Processing Pipeline b476b8cbc235909657c49f59c7474480 https://www.encodeproject.org/files/ENCFF125CKC/@@download/ENCFF125CKC.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF466MRK bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF643CGH 1592510453 ENCODE Processing Pipeline d6dc0a5dd88c7d7b4df2f84519c3afda https://www.encodeproject.org/files/ENCFF466MRK/@@download/ENCFF466MRK.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF396BCM bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF643CGH 962132180 ENCODE Processing Pipeline c179a3c2c9095755766891c7c2c2f840 https://www.encodeproject.org/files/ENCFF396BCM/@@download/ENCFF396BCM.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF870CUX bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF807MUK 1590614502 ENCODE Processing Pipeline 4689fd4a222f017e75b5e3ee8d488196 https://www.encodeproject.org/files/ENCFF870CUX/@@download/ENCFF870CUX.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF221PEC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF807MUK 954884711 ENCODE Processing Pipeline 46c1bd399708a542e17ee816290147b5 https://www.encodeproject.org/files/ENCFF221PEC/@@download/ENCFF221PEC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF868WFT bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF807MUK 1686052430 ENCODE Processing Pipeline c0cb9e25c6b39679fc1b85f9108e5cb4 https://www.encodeproject.org/files/ENCFF868WFT/@@download/ENCFF868WFT.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF957MQC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF807MUK 1067644656 ENCODE Processing Pipeline 5cdfe5a785f504275beeea240bcdadb2 https://www.encodeproject.org/files/ENCFF957MQC/@@download/ENCFF957MQC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF027TXI bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 551256867 ENCODE Processing Pipeline 2331377c3a329f7a2db0684ddb20aade https://www.encodeproject.org/files/ENCFF027TXI/@@download/ENCFF027TXI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599RJO bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 598220841 ENCODE Processing Pipeline fcb80b86d9190012a125e3a0baa46818 https://www.encodeproject.org/files/ENCFF599RJO/@@download/ENCFF599RJO.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF977SLV bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 857546693 ENCODE Processing Pipeline dca475b6bb1621413473d1c8b414b9eb https://www.encodeproject.org/files/ENCFF977SLV/@@download/ENCFF977SLV.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF412GSP bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 519607483 ENCODE Processing Pipeline 015cf6ee1aaa861be2030ebc1df9bf30 https://www.encodeproject.org/files/ENCFF412GSP/@@download/ENCFF412GSP.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF076MKO bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 616400105 ENCODE Processing Pipeline f32c0ebcbf42ef970f825d92841b362e https://www.encodeproject.org/files/ENCFF076MKO/@@download/ENCFF076MKO.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF485LWD bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 6230980 ENCODE Processing Pipeline 720905cff0b320a19debc940e0fa7939 https://www.encodeproject.org/files/ENCFF485LWD/@@download/ENCFF485LWD.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF262RFD bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 6860354 ENCODE Processing Pipeline cc30a15a3c0508b51cd31125d21cb18a https://www.encodeproject.org/files/ENCFF262RFD/@@download/ENCFF262RFD.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF405AYX bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF843AOW 12926320 ENCODE Processing Pipeline d4adb3962337c7e8551f80f4b371bd69 https://www.encodeproject.org/files/ENCFF405AYX/@@download/ENCFF405AYX.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF732LDY bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 897902526 ENCODE Processing Pipeline fdc7d50fa3bbda48664280330d7bb383 https://www.encodeproject.org/files/ENCFF732LDY/@@download/ENCFF732LDY.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF843AOW bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 6536779 ENCODE Processing Pipeline 10c6e75121fa75557c741eb58a7d7614 https://www.encodeproject.org/files/ENCFF843AOW/@@download/ENCFF843AOW.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF904NHV bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD 12828716 ENCODE Processing Pipeline bbe3656d6448928df9e5d3269592e82e https://www.encodeproject.org/files/ENCFF904NHV/@@download/ENCFF904NHV.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF090VQB bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF485LWD 12905973 ENCODE Processing Pipeline 6cf0fb04a3a27ed996fa3b5f8424d20b https://www.encodeproject.org/files/ENCFF090VQB/@@download/ENCFF090VQB.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF579NXQ bed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD, ENCFF419RSJ, ENCFF485LWD, ENCFF843AOW 485441 ENCODE Processing Pipeline 65e1b7946a998e561a558520c0306938 https://www.encodeproject.org/files/ENCFF579NXQ/@@download/ENCFF579NXQ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF972UWC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF579NXQ 897629 ENCODE Processing Pipeline bba2de8e1b73ba36040937eb7f9ec179 https://www.encodeproject.org/files/ENCFF972UWC/@@download/ENCFF972UWC.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF806KKM bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD, ENCFF419RSJ, ENCFF485LWD, ENCFF843AOW 521189 ENCODE Processing Pipeline 89b042a0e66462ee10bdabd5f2fcada2 https://www.encodeproject.org/files/ENCFF806KKM/@@download/ENCFF806KKM.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF799DFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF806KKM 952138 ENCODE Processing Pipeline c01817e2f85615c2ce7e8cca36dad7ed https://www.encodeproject.org/files/ENCFF799DFN/@@download/ENCFF799DFN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF726TLF bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 656641487 ENCODE Processing Pipeline a4f1d69e50a263ae5dea8fd7b551b2c9 https://www.encodeproject.org/files/ENCFF726TLF/@@download/ENCFF726TLF.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF104KBC bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 598581194 ENCODE Processing Pipeline 50a03dc9629e083cb768371e422e5d59 https://www.encodeproject.org/files/ENCFF104KBC/@@download/ENCFF104KBC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF214DHW bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 910286428 ENCODE Processing Pipeline fd223d2d9669fbe5f2dbf2efe8559bc2 https://www.encodeproject.org/files/ENCFF214DHW/@@download/ENCFF214DHW.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF013ZEQ bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 518137432 ENCODE Processing Pipeline 63225bf0b4bfedf8751a7b0af7ebf75e https://www.encodeproject.org/files/ENCFF013ZEQ/@@download/ENCFF013ZEQ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF821FHS bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 865288498 ENCODE Processing Pipeline 5fcaf345e4d1d3acbb922269552f2ed0 https://www.encodeproject.org/files/ENCFF821FHS/@@download/ENCFF821FHS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF609KOY bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF071BNB, ENCFF378GKG, ENCFF599NQC 516541 ENCODE Processing Pipeline 64817c03f12a08a77eb97b9c2fabe83d https://www.encodeproject.org/files/ENCFF609KOY/@@download/ENCFF609KOY.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599NQC bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 6265334 ENCODE Processing Pipeline 53716309948af71654d84b0b6d0e153d https://www.encodeproject.org/files/ENCFF599NQC/@@download/ENCFF599NQC.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF071BNB bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 6876513 ENCODE Processing Pipeline 0edd70f9312587973769bef7e96facf5 https://www.encodeproject.org/files/ENCFF071BNB/@@download/ENCFF071BNB.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF926QHY bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 559692774 ENCODE Processing Pipeline a428368f8b7bd0d6c20f86112f85878b https://www.encodeproject.org/files/ENCFF926QHY/@@download/ENCFF926QHY.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF378GKG bed narrowPeak peaks and background as input for IDR ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 6546881 ENCODE Processing Pipeline f62beb40d570ace6d8f3c26e2bfaa89a https://www.encodeproject.org/files/ENCFF378GKG/@@download/ENCFF378GKG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF702NQG bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF071BNB 12941692 ENCODE Processing Pipeline cdc126b47d48db9b4a9af7f86350372c https://www.encodeproject.org/files/ENCFF702NQG/@@download/ENCFF702NQG.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF133GHG bed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF071BNB, ENCFF378GKG, ENCFF599NQC 478482 ENCODE Processing Pipeline 697af8c7cb34aa9dab3e3cabf59c6eea https://www.encodeproject.org/files/ENCFF133GHG/@@download/ENCFF133GHG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF813GOH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF609KOY 1006119 ENCODE Processing Pipeline 1c0260905bd54dee0f68cb61683ac8a2 https://www.encodeproject.org/files/ENCFF813GOH/@@download/ENCFF813GOH.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF777HWF bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF599NQC 12954304 ENCODE Processing Pipeline bd5376e3224a69161ba95ac86a232bda https://www.encodeproject.org/files/ENCFF777HWF/@@download/ENCFF777HWF.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF247LGD bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF378GKG 12984733 ENCODE Processing Pipeline 09ce9c0eddb31d8feeae617c88da3763 https://www.encodeproject.org/files/ENCFF247LGD/@@download/ENCFF247LGD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF018YGJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF133GHG 949392 ENCODE Processing Pipeline 801a10adc5d636526dfa10d68d37ea6b https://www.encodeproject.org/files/ENCFF018YGJ/@@download/ENCFF018YGJ.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF495FWL bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF807MUK 4443178143 ENCODE Processing Pipeline 7e02c963a3dae50a5ba1c585f98597db https://www.encodeproject.org/files/ENCFF495FWL/@@download/ENCFF495FWL.bam hg19 released borderline replicate concordance ENCFF104XBJ bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF668ZNC, ENCFF807MUK 4676717266 ENCODE Processing Pipeline b1f7d0bf6fb047622e307269fefdb563 https://www.encodeproject.org/files/ENCFF104XBJ/@@download/ENCFF104XBJ.bam hg19 released borderline replicate concordance ENCFF365NAQ fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF668ZNC 2098533777 Michael Snyder, Stanford a1caebb237a1ccf003063ef0f6c9d4bf SRA:SRR6214229 https://www.encodeproject.org/files/ENCFF365NAQ/@@download/ENCFF365NAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released borderline replicate concordance ENCFF668ZNC fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF365NAQ 2096105308 Michael Snyder, Stanford 07ba5bee3ae9c0710e86bff39facc65b SRA:SRR6214229 https://www.encodeproject.org/files/ENCFF668ZNC/@@download/ENCFF668ZNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released borderline replicate concordance ENCFF490CJS fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF086HHP 1984258621 Michael Snyder, Stanford 5965672ad8dd104f507cf5b5671aef0a SRA:SRR6214230 https://www.encodeproject.org/files/ENCFF490CJS/@@download/ENCFF490CJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released borderline replicate concordance ENCFF086HHP fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF490CJS 1973592913 Michael Snyder, Stanford b0e080a47277eb575b292ba58bf1d669 SRA:SRR6214230 https://www.encodeproject.org/files/ENCFF086HHP/@@download/ENCFF086HHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released borderline replicate concordance ENCFF055QIN bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF807MUK 3750892542 ENCODE Processing Pipeline 038a84286422c3694c71574cf149a1bb https://www.encodeproject.org/files/ENCFF055QIN/@@download/ENCFF055QIN.bam hg19 released borderline replicate concordance ENCFF332QUM bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF668ZNC, ENCFF807MUK 3994488625 ENCODE Processing Pipeline a45de89ae965fe7e804fe7b618cb5ac1 https://www.encodeproject.org/files/ENCFF332QUM/@@download/ENCFF332QUM.bam hg19 released borderline replicate concordance ENCFF412TDM bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 1111985929 ENCODE Processing Pipeline 2ef75584bdb875fafad87a73bc76fbfd https://www.encodeproject.org/files/ENCFF412TDM/@@download/ENCFF412TDM.bigWig hg19 released borderline replicate concordance ENCFF483GKC bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 967065587 ENCODE Processing Pipeline 4a48d21aa7fc9457c9dd89754bd2a05c https://www.encodeproject.org/files/ENCFF483GKC/@@download/ENCFF483GKC.bigWig hg19 released borderline replicate concordance ENCFF098KGG bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 1997290832 ENCODE Processing Pipeline 90febea79e9e78c3e45e23c42dc1d8ae https://www.encodeproject.org/files/ENCFF098KGG/@@download/ENCFF098KGG.bigWig hg19 released borderline replicate concordance ENCFF047GJD bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 1049210957 ENCODE Processing Pipeline bb36bc758f567ed8bcd8e7cf2d6a9622 https://www.encodeproject.org/files/ENCFF047GJD/@@download/ENCFF047GJD.bigWig hg19 released borderline replicate concordance ENCFF505YSP bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 1103176913 ENCODE Processing Pipeline 792f1847d9b6d13281cfa92fbba44fdd https://www.encodeproject.org/files/ENCFF505YSP/@@download/ENCFF505YSP.bigWig hg19 released borderline replicate concordance ENCFF975GNN bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 2027810279 ENCODE Processing Pipeline 53c5c3616866e88855222272e5d4a967 https://www.encodeproject.org/files/ENCFF975GNN/@@download/ENCFF975GNN.bigWig hg19 released borderline replicate concordance ENCFF341MQJ bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 5851393 ENCODE Processing Pipeline 7c02d5350df7edb02091e78732cfeb5e https://www.encodeproject.org/files/ENCFF341MQJ/@@download/ENCFF341MQJ.bed.gz hg19 released borderline replicate concordance ENCFF558RIA bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF341MQJ 11296215 ENCODE Processing Pipeline 17ef9c206f72350e0b8c3de12414eb62 https://www.encodeproject.org/files/ENCFF558RIA/@@download/ENCFF558RIA.bigBed hg19 released borderline replicate concordance ENCFF863BUI bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 5827292 ENCODE Processing Pipeline 54f1ee4a426541aff84a63284c6c48d7 https://www.encodeproject.org/files/ENCFF863BUI/@@download/ENCFF863BUI.bed.gz hg19 released borderline replicate concordance ENCFF877SBO bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 6968367 ENCODE Processing Pipeline 12a199f45a670e4a144ce6a85d2620ed https://www.encodeproject.org/files/ENCFF877SBO/@@download/ENCFF877SBO.bed.gz hg19 released borderline replicate concordance ENCFF228RXY bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF863BUI 11426943 ENCODE Processing Pipeline 4ae66567de68d711aae7b6f43473886b https://www.encodeproject.org/files/ENCFF228RXY/@@download/ENCFF228RXY.bigBed hg19 released borderline replicate concordance ENCFF127WGD bed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF341MQJ, ENCFF863BUI, ENCFF877SBO 30866 ENCODE Processing Pipeline b92ead80195e6c5e370749dccfe4f410 https://www.encodeproject.org/files/ENCFF127WGD/@@download/ENCFF127WGD.bed.gz hg19 released borderline replicate concordance ENCFF882DIL bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF877SBO 11210813 ENCODE Processing Pipeline e5de340e5850ecfddf4bb3ba6b3ddb59 https://www.encodeproject.org/files/ENCFF882DIL/@@download/ENCFF882DIL.bigBed hg19 released borderline replicate concordance ENCFF681WHN bigBed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF127WGD 112250 ENCODE Processing Pipeline d3e4e5728d949ae9040d91002ec31849 https://www.encodeproject.org/files/ENCFF681WHN/@@download/ENCFF681WHN.bigBed hg19 released borderline replicate concordance ENCFF733VCH bigBed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF100ERQ 142452 ENCODE Processing Pipeline ef2322f498faf22ed7459edab3e7ac8c https://www.encodeproject.org/files/ENCFF733VCH/@@download/ENCFF733VCH.bigBed hg19 released borderline replicate concordance ENCFF100ERQ bed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF341MQJ, ENCFF863BUI, ENCFF877SBO 50640 ENCODE Processing Pipeline bfa6493ee2202e459c7ae5dd5a054be9 https://www.encodeproject.org/files/ENCFF100ERQ/@@download/ENCFF100ERQ.bed.gz hg19 released borderline replicate concordance ENCFF380LIA bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF643CGH, ENCFF668ZNC 4685216115 ENCODE Processing Pipeline 97f707711ce38eedae6811e562a569df https://www.encodeproject.org/files/ENCFF380LIA/@@download/ENCFF380LIA.bam GRCh38 released borderline replicate concordance ENCFF465OFG bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF643CGH 4451778542 ENCODE Processing Pipeline 1c951d07b3a7175550c1f03f040061fa https://www.encodeproject.org/files/ENCFF465OFG/@@download/ENCFF465OFG.bam GRCh38 released borderline replicate concordance ENCFF345FES bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF643CGH, ENCFF668ZNC 4004230712 ENCODE Processing Pipeline b4171cdf64b7bb2c90d9638ed99378a1 https://www.encodeproject.org/files/ENCFF345FES/@@download/ENCFF345FES.bam GRCh38 released borderline replicate concordance ENCFF988CYS bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF643CGH 3761228099 ENCODE Processing Pipeline 42ab591da3fe1e4a8f11cb3349497c73 https://www.encodeproject.org/files/ENCFF988CYS/@@download/ENCFF988CYS.bam GRCh38 released borderline replicate concordance ENCFF940THU bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 1123635899 ENCODE Processing Pipeline e6ba37ffe4d0102de7a638c375537418 https://www.encodeproject.org/files/ENCFF940THU/@@download/ENCFF940THU.bigWig GRCh38 released borderline replicate concordance ENCFF060BEV bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 1066425142 ENCODE Processing Pipeline 0ba07ad4497dbf360e520e217d3e3c64 https://www.encodeproject.org/files/ENCFF060BEV/@@download/ENCFF060BEV.bigWig GRCh38 released borderline replicate concordance ENCFF105OXO bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 1720941423 ENCODE Processing Pipeline 9f4ca54f714c4d17b6bd62b01a325604 https://www.encodeproject.org/files/ENCFF105OXO/@@download/ENCFF105OXO.bigWig GRCh38 released borderline replicate concordance ENCFF691JLK bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 1050530793 ENCODE Processing Pipeline 96abfac040d3c094a4edb95fc2720275 https://www.encodeproject.org/files/ENCFF691JLK/@@download/ENCFF691JLK.bigWig GRCh38 released borderline replicate concordance ENCFF228DUF bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 1088066982 ENCODE Processing Pipeline e09c16ece799a954fbe357e0604eb017 https://www.encodeproject.org/files/ENCFF228DUF/@@download/ENCFF228DUF.bigWig GRCh38 released borderline replicate concordance ENCFF398JJK bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 2086832481 ENCODE Processing Pipeline 5c098164dc325110765dea4d7c177a3b https://www.encodeproject.org/files/ENCFF398JJK/@@download/ENCFF398JJK.bigWig GRCh38 released borderline replicate concordance ENCFF642MMV bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 6899575 ENCODE Processing Pipeline 370165bd6bb3b072f871f9af4985e51c https://www.encodeproject.org/files/ENCFF642MMV/@@download/ENCFF642MMV.bed.gz GRCh38 released borderline replicate concordance ENCFF305OOS bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF642MMV 11217392 ENCODE Processing Pipeline c4db9927e439b815c3f6e4989c78bb4f https://www.encodeproject.org/files/ENCFF305OOS/@@download/ENCFF305OOS.bigBed GRCh38 released borderline replicate concordance ENCFF486ERR bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF561KXA 11287762 ENCODE Processing Pipeline a5ce9a89d1786133b73d4b80eb73b767 https://www.encodeproject.org/files/ENCFF486ERR/@@download/ENCFF486ERR.bigBed GRCh38 released borderline replicate concordance ENCFF034IME bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 5644244 ENCODE Processing Pipeline 3470e96d35706521fa7697f6bfe871d1 https://www.encodeproject.org/files/ENCFF034IME/@@download/ENCFF034IME.bed.gz GRCh38 released borderline replicate concordance ENCFF561KXA bed narrowPeak peaks and background as input for IDR ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 5629427 ENCODE Processing Pipeline 442d7b9770353a9647c73812c3be4cf7 https://www.encodeproject.org/files/ENCFF561KXA/@@download/ENCFF561KXA.bed.gz GRCh38 released borderline replicate concordance ENCFF072FTP bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF034IME 11408067 ENCODE Processing Pipeline f47fcfe690ad66021900d9e16c6d60cf https://www.encodeproject.org/files/ENCFF072FTP/@@download/ENCFF072FTP.bigBed GRCh38 released borderline replicate concordance ENCFF207EGF bed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF034IME, ENCFF419RSJ, ENCFF561KXA, ENCFF642MMV 31600 ENCODE Processing Pipeline e6338ba34c54d67df159a8f17f224de1 https://www.encodeproject.org/files/ENCFF207EGF/@@download/ENCFF207EGF.bed.gz GRCh38 released borderline replicate concordance ENCFF495ISP bigBed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF207EGF 116490 ENCODE Processing Pipeline c1be7d312334f035120363435a4dd541 https://www.encodeproject.org/files/ENCFF495ISP/@@download/ENCFF495ISP.bigBed GRCh38 released borderline replicate concordance ENCFF843HDK bed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF034IME, ENCFF419RSJ, ENCFF561KXA, ENCFF642MMV 53380 ENCODE Processing Pipeline 57fb1434dc24600ea5128473a552836f https://www.encodeproject.org/files/ENCFF843HDK/@@download/ENCFF843HDK.bed.gz GRCh38 released borderline replicate concordance ENCFF068RIG bigBed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF843HDK 150409 ENCODE Processing Pipeline b7d5e612755df24776fc67c3e939cffa https://www.encodeproject.org/files/ENCFF068RIG/@@download/ENCFF068RIG.bigBed GRCh38 released borderline replicate concordance ENCFF592CBD fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF970GQF 3655788210 Michael Snyder, Stanford 8caa6646b0be7e654fa637f17ad7f033 SRA:SRR5112199 https://www.encodeproject.org/files/ENCFF592CBD/@@download/ENCFF592CBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF970GQF fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF592CBD 3357547323 Michael Snyder, Stanford 266674bafd5c81a6b7babbf0ea4108f4 SRA:SRR5112199 https://www.encodeproject.org/files/ENCFF970GQF/@@download/ENCFF970GQF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF202EJB fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF914KKF 3760025522 Michael Snyder, Stanford 8e5720ad6789f78be4ef17c3b8541a56 SRA:SRR5112200 https://www.encodeproject.org/files/ENCFF202EJB/@@download/ENCFF202EJB.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF914KKF fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF202EJB 4178942090 Michael Snyder, Stanford a86416c22ec93435336431b1016e2c7e SRA:SRR5112200 https://www.encodeproject.org/files/ENCFF914KKF/@@download/ENCFF914KKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF426ILM bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF643CGH, ENCFF914KKF 7197234994 ENCODE Processing Pipeline 2710aadade873105f50611973464956a https://www.encodeproject.org/files/ENCFF426ILM/@@download/ENCFF426ILM.bam GRCh38 released mild to moderate bottlenecking ENCFF491QSR bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF643CGH, ENCFF970GQF 6553740828 ENCODE Processing Pipeline 3d72ba2531cbec4ac53537e2886395da https://www.encodeproject.org/files/ENCFF491QSR/@@download/ENCFF491QSR.bam GRCh38 released mild to moderate bottlenecking ENCFF216YZE bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF807MUK, ENCFF914KKF 7196767730 ENCODE Processing Pipeline 2287216506e8eb77b7157620d1ec46d6 https://www.encodeproject.org/files/ENCFF216YZE/@@download/ENCFF216YZE.bam hg19 released mild to moderate bottlenecking ENCFF565JZS bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF807MUK, ENCFF970GQF 6553254289 ENCODE Processing Pipeline 79c9df62790006418014acc16c7d6385 https://www.encodeproject.org/files/ENCFF565JZS/@@download/ENCFF565JZS.bam hg19 released mild to moderate bottlenecking ENCFF580EVG bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF643CGH, ENCFF970GQF 4481096810 ENCODE Processing Pipeline 0f45c7b4113d154beef68824625c5371 https://www.encodeproject.org/files/ENCFF580EVG/@@download/ENCFF580EVG.bam GRCh38 released mild to moderate bottlenecking ENCFF736UXD bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF807MUK, ENCFF970GQF 4466230069 ENCODE Processing Pipeline 391985b0e6a90cd0908214e45b881fbe https://www.encodeproject.org/files/ENCFF736UXD/@@download/ENCFF736UXD.bam hg19 released mild to moderate bottlenecking ENCFF648SPM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF807MUK, ENCFF914KKF 4908091092 ENCODE Processing Pipeline ecc8041b14fc2608047e90ad53a7d43c https://www.encodeproject.org/files/ENCFF648SPM/@@download/ENCFF648SPM.bam hg19 released mild to moderate bottlenecking ENCFF625RFM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF643CGH, ENCFF914KKF 4919181865 ENCODE Processing Pipeline cbf49415d7cb174648daea12fef08588 https://www.encodeproject.org/files/ENCFF625RFM/@@download/ENCFF625RFM.bam GRCh38 released mild to moderate bottlenecking ENCFF586VWM bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 1507523708 ENCODE Processing Pipeline 7413c44febcd78ef3a21a3c70e8076a5 https://www.encodeproject.org/files/ENCFF586VWM/@@download/ENCFF586VWM.bigWig hg19 released mild to moderate bottlenecking ENCFF362IYC bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 1462633010 ENCODE Processing Pipeline ab949d555b5778d385e305981276fd9d https://www.encodeproject.org/files/ENCFF362IYC/@@download/ENCFF362IYC.bigWig hg19 released mild to moderate bottlenecking ENCFF715PTE bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 2313949543 ENCODE Processing Pipeline 93203e57e33aa0c952274834aea96c6f https://www.encodeproject.org/files/ENCFF715PTE/@@download/ENCFF715PTE.bigWig hg19 released mild to moderate bottlenecking ENCFF252DSL bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 1867022825 ENCODE Processing Pipeline e20dff3bc113f086c3ed4531041bfe22 https://www.encodeproject.org/files/ENCFF252DSL/@@download/ENCFF252DSL.bigWig hg19 released mild to moderate bottlenecking ENCFF251WBZ bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 1446681404 ENCODE Processing Pipeline 833080b3579c98f5c61c85f2ce0539fd https://www.encodeproject.org/files/ENCFF251WBZ/@@download/ENCFF251WBZ.bigWig hg19 released mild to moderate bottlenecking ENCFF576UWV bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 2440543893 ENCODE Processing Pipeline afde5389e064f8627348c9bc92635152 https://www.encodeproject.org/files/ENCFF576UWV/@@download/ENCFF576UWV.bigWig hg19 released mild to moderate bottlenecking ENCFF492EAL bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 7312273 ENCODE Processing Pipeline 2a0205300002fad10505b98d9df863cf https://www.encodeproject.org/files/ENCFF492EAL/@@download/ENCFF492EAL.bed.gz hg19 released mild to moderate bottlenecking ENCFF455HXY bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 7179191 ENCODE Processing Pipeline 6037a0d0b1073ae8d233714b1521e9be https://www.encodeproject.org/files/ENCFF455HXY/@@download/ENCFF455HXY.bed.gz hg19 released mild to moderate bottlenecking ENCFF795PEX bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 6957758 ENCODE Processing Pipeline b0c8e8e73bfd433eeb683f077d853aca https://www.encodeproject.org/files/ENCFF795PEX/@@download/ENCFF795PEX.bed.gz hg19 released mild to moderate bottlenecking ENCFF387XZE bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF795PEX 12723088 ENCODE Processing Pipeline 0ad270cfce760cbd9a7b226d05ef6d47 https://www.encodeproject.org/files/ENCFF387XZE/@@download/ENCFF387XZE.bigBed hg19 released mild to moderate bottlenecking ENCFF475ISL bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF455HXY 13047303 ENCODE Processing Pipeline fc592fae31e7532815317b285ae02b79 https://www.encodeproject.org/files/ENCFF475ISL/@@download/ENCFF475ISL.bigBed hg19 released mild to moderate bottlenecking ENCFF347FZH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF492EAL 13065666 ENCODE Processing Pipeline 20110ee11f065790d04464256372e112 https://www.encodeproject.org/files/ENCFF347FZH/@@download/ENCFF347FZH.bigBed hg19 released mild to moderate bottlenecking ENCFF343VAG bed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF455HXY, ENCFF492EAL, ENCFF795PEX 981346 ENCODE Processing Pipeline 20f881850f0962d6e858458990dea10e https://www.encodeproject.org/files/ENCFF343VAG/@@download/ENCFF343VAG.bed.gz hg19 released mild to moderate bottlenecking ENCFF591MWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF343VAG 2046796 ENCODE Processing Pipeline 9fac042e51bc3f2351d34ca34e53c93a https://www.encodeproject.org/files/ENCFF591MWQ/@@download/ENCFF591MWQ.bigBed hg19 released mild to moderate bottlenecking ENCFF229YSW bed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF455HXY, ENCFF492EAL, ENCFF795PEX 1279497 ENCODE Processing Pipeline 82175322dd3d0a9e2c11ada5394bf2a7 https://www.encodeproject.org/files/ENCFF229YSW/@@download/ENCFF229YSW.bed.gz hg19 released mild to moderate bottlenecking ENCFF756WVN bigBed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF229YSW 2594150 ENCODE Processing Pipeline 8656229c6659104b3411853aece02881 https://www.encodeproject.org/files/ENCFF756WVN/@@download/ENCFF756WVN.bigBed hg19 released mild to moderate bottlenecking ENCFF137RSX bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 1551622372 ENCODE Processing Pipeline 02fd5c32faf97a34d08290e09b78ca4d https://www.encodeproject.org/files/ENCFF137RSX/@@download/ENCFF137RSX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF678BHT bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 1471652651 ENCODE Processing Pipeline 86006e1420163d0737973d1238e30b53 https://www.encodeproject.org/files/ENCFF678BHT/@@download/ENCFF678BHT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF630GUV bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 2304407887 ENCODE Processing Pipeline bc4a04891923419b70645a67108d7b58 https://www.encodeproject.org/files/ENCFF630GUV/@@download/ENCFF630GUV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF286EIX bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 1867286461 ENCODE Processing Pipeline a85d95d799758c0eee621cf5ae5e2e7d https://www.encodeproject.org/files/ENCFF286EIX/@@download/ENCFF286EIX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF899FYK bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 1459534650 ENCODE Processing Pipeline 70ce89d9299db52b4191c9e69b4e6c0f https://www.encodeproject.org/files/ENCFF899FYK/@@download/ENCFF899FYK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF723XZS bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 2427778997 ENCODE Processing Pipeline 00d0c777f5fc37db311c3fc56fc47c63 https://www.encodeproject.org/files/ENCFF723XZS/@@download/ENCFF723XZS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF414ELH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF904SII 13085965 ENCODE Processing Pipeline 83a1fd68c277f5e5d9f08d4a4bdcb09a https://www.encodeproject.org/files/ENCFF414ELH/@@download/ENCFF414ELH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF904SII bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 7254664 ENCODE Processing Pipeline b1d5116974164be69a5ca21938e93612 https://www.encodeproject.org/files/ENCFF904SII/@@download/ENCFF904SII.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF508RKH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV 13063831 ENCODE Processing Pipeline 59d99ede8d65d842a7cdebe3f4e97ad6 https://www.encodeproject.org/files/ENCFF508RKH/@@download/ENCFF508RKH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF201JCN bed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV, ENCFF419RSJ, ENCFF765JAS, ENCFF904SII 982291 ENCODE Processing Pipeline 958eec1062ae2332cf8eead7fc50970b https://www.encodeproject.org/files/ENCFF201JCN/@@download/ENCFF201JCN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF911UJU bigBed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF201JCN 2049397 ENCODE Processing Pipeline 5b8c7baef14253352a01866fe5eec1df https://www.encodeproject.org/files/ENCFF911UJU/@@download/ENCFF911UJU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF838OPM bigBed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF968NOG 2587338 ENCODE Processing Pipeline 435f87164a0daea7bf9df0933c2157b9 https://www.encodeproject.org/files/ENCFF838OPM/@@download/ENCFF838OPM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF765JAS bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 7198901 ENCODE Processing Pipeline 0fa2964ce8c805467081f2d499d9afb6 https://www.encodeproject.org/files/ENCFF765JAS/@@download/ENCFF765JAS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF266WKV bed narrowPeak peaks and background as input for IDR ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 7319119 ENCODE Processing Pipeline 2d1aef805f4428e56e8a568ccec35d58 https://www.encodeproject.org/files/ENCFF266WKV/@@download/ENCFF266WKV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF302GSE bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF765JAS 13094543 ENCODE Processing Pipeline 1f3b7f586279074ebcc9296a843c16d4 https://www.encodeproject.org/files/ENCFF302GSE/@@download/ENCFF302GSE.bigBed GRCh38 released mild to moderate bottlenecking ENCFF968NOG bed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV, ENCFF419RSJ, ENCFF765JAS, ENCFF904SII 1274717 ENCODE Processing Pipeline f70aa165714248edc8b78aa07f9b3a35 https://www.encodeproject.org/files/ENCFF968NOG/@@download/ENCFF968NOG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF000NYL bigBed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXU 164964 Richard Myers, HAIB ff41c1f3027d01111105849243523904 https://www.encodeproject.org/files/ENCFF000NYL/@@download/ENCFF000NYL.bigBed hg19 archived mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYM bigBed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXV 175528 Richard Myers, HAIB defaa54ae5bcc6d85119525e17d1c9eb https://www.encodeproject.org/files/ENCFF000NYM/@@download/ENCFF000NYM.bigBed hg19 archived mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYO bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NYY 1411780147 Richard Myers, HAIB c7dfa02ba121c3f878edefa8386bc53d https://www.encodeproject.org/files/ENCFF000NYO/@@download/ENCFF000NYO.bam hg19 archived mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYP bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZA 2162215343 Richard Myers, HAIB 50c197eb4b88c636ea5166e0c205140d https://www.encodeproject.org/files/ENCFF000NYP/@@download/ENCFF000NYP.bam hg19 archived mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYQ bigWig raw signal ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 22370233 Richard Myers, HAIB dbd7d8666cd0fcfeb7022890a573eea1 https://www.encodeproject.org/files/ENCFF000NYQ/@@download/ENCFF000NYQ.bigWig hg19 archived mixed read lengths, low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYR bigWig raw signal ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 19002486 Richard Myers, HAIB 0a6f9319e71de87aa2d283a78f01610b https://www.encodeproject.org/files/ENCFF000NYR/@@download/ENCFF000NYR.bigWig hg19 archived mixed read lengths, low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NYY fastq reads ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1317809671 Richard Myers, HAIB 5e518f0c12b14e002454400f630d7767 https://www.encodeproject.org/files/ENCFF000NYY/@@download/ENCFF000NYY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released mixed read lengths, low read length, inconsistent control read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000NZA fastq reads ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 32 single-ended 2062006233 Richard Myers, HAIB 3a840846a41a3aac8f84c130460222bb https://www.encodeproject.org/files/ENCFF000NZA/@@download/ENCFF000NZA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released mixed read lengths, inconsistent control read length, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001TXU bed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 88357 Richard Myers, HAIB 9e99d7487a607fc8583e4c8fb20cf7f4 https://www.encodeproject.org/files/ENCFF001TXU/@@download/ENCFF001TXU.bed.gz hg19 archived mixed read lengths, low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001TXV bed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 84744 Richard Myers, HAIB aaae43fdd8d0700b27b96f903bf2e297 https://www.encodeproject.org/files/ENCFF001TXV/@@download/ENCFF001TXV.bed.gz hg19 archived mixed read lengths, low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF386AHN bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF807MUK 340390215 ENCODE Processing Pipeline bc0ecd7ea08abaa5640f1e0b1c142ce3 https://www.encodeproject.org/files/ENCFF386AHN/@@download/ENCFF386AHN.bam hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF400ZBQ bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF807MUK 1238840093 ENCODE Processing Pipeline 4d884c450ea2fde3e9be1a74b92345ad https://www.encodeproject.org/files/ENCFF400ZBQ/@@download/ENCFF400ZBQ.bam hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF941DAK bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF643CGH 1241277873 ENCODE Processing Pipeline 4130f8899fc638c62b75a8d3d4fcfb57 https://www.encodeproject.org/files/ENCFF941DAK/@@download/ENCFF941DAK.bam GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF455QSR bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF643CGH 343341036 ENCODE Processing Pipeline 28fb42f6ab0368bc0e092fb54751b457 https://www.encodeproject.org/files/ENCFF455QSR/@@download/ENCFF455QSR.bam GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF876KTI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF643CGH 471465252 ENCODE Processing Pipeline 6e2a04a4263b59459407a309082cf709 https://www.encodeproject.org/files/ENCFF876KTI/@@download/ENCFF876KTI.bam GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF540RBQ bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF643CGH 1989235633 ENCODE Processing Pipeline 665a453fe922404539c28c44deb2d302 https://www.encodeproject.org/files/ENCFF540RBQ/@@download/ENCFF540RBQ.bam GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF480ZVD bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF807MUK 1985651197 ENCODE Processing Pipeline 284614cfcb60d6850470cd5e196d2ea0 https://www.encodeproject.org/files/ENCFF480ZVD/@@download/ENCFF480ZVD.bam hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF259SJI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF807MUK 468458084 ENCODE Processing Pipeline 1c2a8be0cbaf0f980b167a119bc13f2b https://www.encodeproject.org/files/ENCFF259SJI/@@download/ENCFF259SJI.bam hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF898SKK bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 540437663 ENCODE Processing Pipeline a5c16e039790bb1fe4432cb56ddb9f01 https://www.encodeproject.org/files/ENCFF898SKK/@@download/ENCFF898SKK.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF425AIF bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 585597953 ENCODE Processing Pipeline 2d3bb71b5c07b37010c5dfb721f460a9 https://www.encodeproject.org/files/ENCFF425AIF/@@download/ENCFF425AIF.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF826FEA bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 550743648 ENCODE Processing Pipeline 494414d11e34b1c0b44b6591db54acf5 https://www.encodeproject.org/files/ENCFF826FEA/@@download/ENCFF826FEA.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF126ZEW bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 596584394 ENCODE Processing Pipeline 5d20e1f2f25c06c7c2d4c533b9ad3cf0 https://www.encodeproject.org/files/ENCFF126ZEW/@@download/ENCFF126ZEW.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF405LKD bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 540998135 ENCODE Processing Pipeline a551117f9c76c096698080b112adc161 https://www.encodeproject.org/files/ENCFF405LKD/@@download/ENCFF405LKD.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF203FQH bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 667668367 ENCODE Processing Pipeline 2d6f4478f6e8d706ad35c05afc46c2d2 https://www.encodeproject.org/files/ENCFF203FQH/@@download/ENCFF203FQH.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF141SOO bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 305201830 ENCODE Processing Pipeline 1885f9a2d34097fc86eb897f1f8ea04e https://www.encodeproject.org/files/ENCFF141SOO/@@download/ENCFF141SOO.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF559WHJ bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 254364590 ENCODE Processing Pipeline 5b41a82bf4fa56620c5b88a47fe48e0e https://www.encodeproject.org/files/ENCFF559WHJ/@@download/ENCFF559WHJ.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF853RLK bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 311878324 ENCODE Processing Pipeline 8c17fcd020f5f912d41a4a9943036e2a https://www.encodeproject.org/files/ENCFF853RLK/@@download/ENCFF853RLK.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF557SNT bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 465024555 ENCODE Processing Pipeline ea66a1600e02608c120badceb9ff711a https://www.encodeproject.org/files/ENCFF557SNT/@@download/ENCFF557SNT.bigWig GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF998SQA bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 260735781 ENCODE Processing Pipeline 0e4ea09e5469a8ab9ffdd90ba93d6387 https://www.encodeproject.org/files/ENCFF998SQA/@@download/ENCFF998SQA.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF430KUN bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 4668465 ENCODE Processing Pipeline fa96a0a34959fcff7bd272a07b9cd100 https://www.encodeproject.org/files/ENCFF430KUN/@@download/ENCFF430KUN.bed.gz GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF137ABA bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 5289715 ENCODE Processing Pipeline 7e59419095c3195595a811dac9c6a661 https://www.encodeproject.org/files/ENCFF137ABA/@@download/ENCFF137ABA.bed.gz GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF989HAC bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF430KUN 10841292 ENCODE Processing Pipeline 09da4da25df1898eac74e530ceaa339e https://www.encodeproject.org/files/ENCFF989HAC/@@download/ENCFF989HAC.bigBed GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF080WIZ bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 3424925 ENCODE Processing Pipeline d3bf696962d290d77c7ef0976a4546d6 https://www.encodeproject.org/files/ENCFF080WIZ/@@download/ENCFF080WIZ.bed.gz GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF833UPI bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 485499071 ENCODE Processing Pipeline 979bc4b6b242545f99022e582a143d6d https://www.encodeproject.org/files/ENCFF833UPI/@@download/ENCFF833UPI.bigWig hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF594LDC bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF137ABA 11278338 ENCODE Processing Pipeline 5af499ab3a93138b3438dca8ca92b22e https://www.encodeproject.org/files/ENCFF594LDC/@@download/ENCFF594LDC.bigBed GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF562ZXJ bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 4668469 ENCODE Processing Pipeline ebde3d9c6eff4885283b7b709f7f18d5 https://www.encodeproject.org/files/ENCFF562ZXJ/@@download/ENCFF562ZXJ.bed.gz hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF618GTZ bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF080WIZ 8290273 ENCODE Processing Pipeline a4ea728950743c3dcc1f304197f95efa https://www.encodeproject.org/files/ENCFF618GTZ/@@download/ENCFF618GTZ.bigBed GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF775RYU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF434NOC 234763 ENCODE Processing Pipeline 48e544db6217d2a0ff6adf58d76e6e03 https://www.encodeproject.org/files/ENCFF775RYU/@@download/ENCFF775RYU.bigBed GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF434NOC bed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080WIZ, ENCFF137ABA, ENCFF419RSJ, ENCFF430KUN 97032 ENCODE Processing Pipeline faa8fa34e33c61a72e19b471739270ec https://www.encodeproject.org/files/ENCFF434NOC/@@download/ENCFF434NOC.bed.gz GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF274BBE bed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080WIZ, ENCFF137ABA, ENCFF419RSJ, ENCFF430KUN 109254 ENCODE Processing Pipeline fa6628790c3f493dcfca9008a5581857 https://www.encodeproject.org/files/ENCFF274BBE/@@download/ENCFF274BBE.bed.gz GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF022KXM bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 3498445 ENCODE Processing Pipeline 4b1b0e06c290e3bfc70d0f2098bcde1d https://www.encodeproject.org/files/ENCFF022KXM/@@download/ENCFF022KXM.bed.gz hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF454QRR bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF022KXM 8388820 ENCODE Processing Pipeline 13003522923ba442c48eefec72d709df https://www.encodeproject.org/files/ENCFF454QRR/@@download/ENCFF454QRR.bigBed hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF040RJG bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF632AEM 11280436 ENCODE Processing Pipeline b058ea3b311c0d225ca847a0d55c2d50 https://www.encodeproject.org/files/ENCFF040RJG/@@download/ENCFF040RJG.bigBed hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF321MSM bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562ZXJ 10848433 ENCODE Processing Pipeline 867aa3d068b0e1a8a7ec7d0e1d8070be https://www.encodeproject.org/files/ENCFF321MSM/@@download/ENCFF321MSM.bigBed hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF632AEM bed narrowPeak peaks and background as input for IDR ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 5291423 ENCODE Processing Pipeline ccc5da720b615fdf4f07b4e11fd69c3f https://www.encodeproject.org/files/ENCFF632AEM/@@download/ENCFF632AEM.bed.gz hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF849CSU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274BBE 250976 ENCODE Processing Pipeline 1093d460a6875bbee104340386bb1643 https://www.encodeproject.org/files/ENCFF849CSU/@@download/ENCFF849CSU.bigBed GRCh38 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF936XYD bed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF022KXM, ENCFF562ZXJ, ENCFF632AEM 96483 ENCODE Processing Pipeline 90c0de5c0124c532f655193383893f1d https://www.encodeproject.org/files/ENCFF936XYD/@@download/ENCFF936XYD.bed.gz hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF048JKT bed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF022KXM, ENCFF562ZXJ, ENCFF632AEM 104093 ENCODE Processing Pipeline 821185bde94cd93d206c629d07774040 https://www.encodeproject.org/files/ENCFF048JKT/@@download/ENCFF048JKT.bed.gz hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF420APQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF936XYD 234058 ENCODE Processing Pipeline 3ddc06ba27ea3175d7bb6c3cea9cd1ec https://www.encodeproject.org/files/ENCFF420APQ/@@download/ENCFF420APQ.bigBed hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF629KKG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF048JKT 244602 ENCODE Processing Pipeline ca641269312852ed4413c0935cac954c https://www.encodeproject.org/files/ENCFF629KKG/@@download/ENCFF629KKG.bigBed hg19 released mixed read lengths, low read length, low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF000VSQ bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 409582154 Michael Snyder, Stanford 6e28dd49f7beb2a7ce39392c4f0374cc https://www.encodeproject.org/files/ENCFF000VSQ/@@download/ENCFF000VSQ.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSR bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VDY 1606699 Michael Snyder, Stanford ecae6efa8ecea54400e3d46097019a0d https://www.encodeproject.org/files/ENCFF000VSR/@@download/ENCFF000VSR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VSS fastq reads ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 866308069 Michael Snyder, Stanford 07ea70e99ca11fc3ff416bb6bf8c7b7f https://www.encodeproject.org/files/ENCFF000VSS/@@download/ENCFF000VSS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VSU bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 676995464 Michael Snyder, Stanford 4a4867a44c7c81e3af16373f784c9aec https://www.encodeproject.org/files/ENCFF000VSU/@@download/ENCFF000VSU.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSV fastq reads ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1386720214 Michael Snyder, Stanford 3184a1b21a60a10e7947505e70440c88 https://www.encodeproject.org/files/ENCFF000VSV/@@download/ENCFF000VSV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VSX bigWig signal ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 410295605 Michael Snyder, Stanford 463fc33bea2dcbdd2c0ca6826fc9e33d https://www.encodeproject.org/files/ENCFF000VSX/@@download/ENCFF000VSX.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001VDY bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 722249 Michael Snyder, Stanford 52ed65dd7ad9cf290819dc2431d7966a https://www.encodeproject.org/files/ENCFF001VDY/@@download/ENCFF001VDY.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF111WAU bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF643CGH 855339862 ENCODE Processing Pipeline f9fe74b2723da8ab9e76505065bb0728 https://www.encodeproject.org/files/ENCFF111WAU/@@download/ENCFF111WAU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF876YXO bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF643CGH 1386257340 ENCODE Processing Pipeline 3a8748bbef1c033ea80ad1d1399ae3c2 https://www.encodeproject.org/files/ENCFF876YXO/@@download/ENCFF876YXO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF313RZR bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF643CGH 482599241 ENCODE Processing Pipeline 6ae8d761eddcc3c2ecb2c46fd5144e06 https://www.encodeproject.org/files/ENCFF313RZR/@@download/ENCFF313RZR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF649NFF bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF643CGH 881292251 ENCODE Processing Pipeline 862d6485bce72cd2070b5b2781e2ca39 https://www.encodeproject.org/files/ENCFF649NFF/@@download/ENCFF649NFF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF576YWR bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF807MUK 852214403 ENCODE Processing Pipeline 89b04db8366fa8b8636fd89a0ae034b8 https://www.encodeproject.org/files/ENCFF576YWR/@@download/ENCFF576YWR.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF812ZZO bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF807MUK 1381322424 ENCODE Processing Pipeline 97197e5bac5e25fe3c0c50fb986b7b29 https://www.encodeproject.org/files/ENCFF812ZZO/@@download/ENCFF812ZZO.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF546JQP bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF807MUK 482593304 ENCODE Processing Pipeline ee34479e0944cb8ab2fc0b89241a9162 https://www.encodeproject.org/files/ENCFF546JQP/@@download/ENCFF546JQP.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF355ZOB bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF807MUK 878564748 ENCODE Processing Pipeline 678eea37c37f8f8621846d17f53bf5e2 https://www.encodeproject.org/files/ENCFF355ZOB/@@download/ENCFF355ZOB.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF307KCB bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 227267232 ENCODE Processing Pipeline 4305561b82fd57a8f7cb6058996d77ca https://www.encodeproject.org/files/ENCFF307KCB/@@download/ENCFF307KCB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF086OCM bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 513166956 ENCODE Processing Pipeline 8597500b997f6bad447ac3fe35e0b044 https://www.encodeproject.org/files/ENCFF086OCM/@@download/ENCFF086OCM.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF253OOR bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 186581 ENCODE Processing Pipeline c051a2082c2cebef6f097c085ba97220 https://www.encodeproject.org/files/ENCFF253OOR/@@download/ENCFF253OOR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF881ZSX bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 4229342 ENCODE Processing Pipeline 0b3344f3b272c6e547f3a91c5c0b799b https://www.encodeproject.org/files/ENCFF881ZSX/@@download/ENCFF881ZSX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF402ZPO bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF253OOR 476826 ENCODE Processing Pipeline beec9d452b49cefa0b42e157e38a04e3 https://www.encodeproject.org/files/ENCFF402ZPO/@@download/ENCFF402ZPO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF803SFG bed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF253OOR, ENCFF452BDW, ENCFF881ZSX 20674 ENCODE Processing Pipeline 08e28c36fbf0a60d7b2b3cba2b737d0b https://www.encodeproject.org/files/ENCFF803SFG/@@download/ENCFF803SFG.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF301EEM bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 197534098 ENCODE Processing Pipeline 55484e74bed2a17e40f23cb81b290bbc https://www.encodeproject.org/files/ENCFF301EEM/@@download/ENCFF301EEM.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF968FGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF803SFG 88326 ENCODE Processing Pipeline 8fe4d1f1015d2a2bc9a3beb69e4f4848 https://www.encodeproject.org/files/ENCFF968FGD/@@download/ENCFF968FGD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF646FQY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF721SDD 359667 ENCODE Processing Pipeline 2720712ffcfd4032650e1ce501fff126 https://www.encodeproject.org/files/ENCFF646FQY/@@download/ENCFF646FQY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF467PXY bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF881ZSX 10638919 ENCODE Processing Pipeline 3a048c7021ae931d324354330900f5f9 https://www.encodeproject.org/files/ENCFF467PXY/@@download/ENCFF467PXY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF672DPB bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF452BDW 11000731 ENCODE Processing Pipeline 50682be9cc5114a35e61071bdf606619 https://www.encodeproject.org/files/ENCFF672DPB/@@download/ENCFF672DPB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF071RMK bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 72257164 ENCODE Processing Pipeline 1dd75c8d604cb0fb7fccebfa8d5bad90 https://www.encodeproject.org/files/ENCFF071RMK/@@download/ENCFF071RMK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF750DSI bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 154671354 ENCODE Processing Pipeline ee8a91545a4023ab93df51a5b94f7214 https://www.encodeproject.org/files/ENCFF750DSI/@@download/ENCFF750DSI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF024UVN bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 307122676 ENCODE Processing Pipeline 62fd83af8ddb43fcf3391803eebdb8ec https://www.encodeproject.org/files/ENCFF024UVN/@@download/ENCFF024UVN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF452BDW bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 4842452 ENCODE Processing Pipeline 3617f901d764d7d3548c5d4f598890f5 https://www.encodeproject.org/files/ENCFF452BDW/@@download/ENCFF452BDW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF721SDD bed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF253OOR, ENCFF452BDW, ENCFF881ZSX 144927 ENCODE Processing Pipeline 2baa963f5a20127cf4c51d1458e74e6f https://www.encodeproject.org/files/ENCFF721SDD/@@download/ENCFF721SDD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF212JPM bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF903AOD 11001775 ENCODE Processing Pipeline 1105386b2ca87390baf24c99845cd06a https://www.encodeproject.org/files/ENCFF212JPM/@@download/ENCFF212JPM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF645HEW bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF814RAA 477368 ENCODE Processing Pipeline da0bbe55cfaf955dffbf8d84e4a562c0 https://www.encodeproject.org/files/ENCFF645HEW/@@download/ENCFF645HEW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF571IVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF567NFS 361695 ENCODE Processing Pipeline 66750727d886832e22840fa0e933fd98 https://www.encodeproject.org/files/ENCFF571IVQ/@@download/ENCFF571IVQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF479XOG bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 156264285 ENCODE Processing Pipeline 3bd51ce5422385c3ec40eb271f9b8c49 https://www.encodeproject.org/files/ENCFF479XOG/@@download/ENCFF479XOG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF943GYL bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 4230302 ENCODE Processing Pipeline 54c9fde670a75bd7b84587cc27a279de https://www.encodeproject.org/files/ENCFF943GYL/@@download/ENCFF943GYL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF711GDP bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 196819396 ENCODE Processing Pipeline 10b424026eeb39025616f203473236f1 https://www.encodeproject.org/files/ENCFF711GDP/@@download/ENCFF711GDP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF497GSR bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 221624854 ENCODE Processing Pipeline 1559cbe4e8487d24403e74d36d3ded27 https://www.encodeproject.org/files/ENCFF497GSR/@@download/ENCFF497GSR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF257ZPK bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF943GYL 10640789 ENCODE Processing Pipeline 57c4ee17c91570e929b3c6b79c2c6da1 https://www.encodeproject.org/files/ENCFF257ZPK/@@download/ENCFF257ZPK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF645LHM bed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF814RAA, ENCFF903AOD, ENCFF943GYL 20302 ENCODE Processing Pipeline dcfc7ff9146e1e3f5d2915f2b45c24b5 https://www.encodeproject.org/files/ENCFF645LHM/@@download/ENCFF645LHM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF814RAA bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 186591 ENCODE Processing Pipeline b6e045513505ff204ead3d8866e3269d https://www.encodeproject.org/files/ENCFF814RAA/@@download/ENCFF814RAA.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF903AOD bed narrowPeak peaks and background as input for IDR ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 4841359 ENCODE Processing Pipeline 15ada7fb0fc73a27a22af3d08a918ab7 https://www.encodeproject.org/files/ENCFF903AOD/@@download/ENCFF903AOD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF603TOF bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 71962001 ENCODE Processing Pipeline 7bbaefd6c0606d3a5ca02f58392df8d3 https://www.encodeproject.org/files/ENCFF603TOF/@@download/ENCFF603TOF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF761FWM bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 307241271 ENCODE Processing Pipeline cd3afdd36b1c953a75a769b2ea202244 https://www.encodeproject.org/files/ENCFF761FWM/@@download/ENCFF761FWM.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF195RAW bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 521321899 ENCODE Processing Pipeline 923c2ac35ff4998869a18c955721764e https://www.encodeproject.org/files/ENCFF195RAW/@@download/ENCFF195RAW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF567NFS bed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF814RAA, ENCFF903AOD, ENCFF943GYL 146497 ENCODE Processing Pipeline 605a6671380a5a7fcce464be7f420515 https://www.encodeproject.org/files/ENCFF567NFS/@@download/ENCFF567NFS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF243ZRP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF645LHM 87948 ENCODE Processing Pipeline 32dee7dea401544f493c24afa2f4e232 https://www.encodeproject.org/files/ENCFF243ZRP/@@download/ENCFF243ZRP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VUC bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VUU 255647819 Michael Snyder, Stanford e735ec94ce4d7716373aa0a3e1769e6b https://www.encodeproject.org/files/ENCFF000VUC/@@download/ENCFF000VUC.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000VUD bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VED 3168880 Michael Snyder, Stanford 2b47795580c65c0689f28092d213302d https://www.encodeproject.org/files/ENCFF000VUD/@@download/ENCFF000VUD.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000VUE bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VUW 441787382 Michael Snyder, Stanford f4dd7412a968abb7f5e62eee1a80113d https://www.encodeproject.org/files/ENCFF000VUE/@@download/ENCFF000VUE.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000VUF bigWig signal ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 286285853 Michael Snyder, Stanford d806bfbb7d266c4a66bee9219551bbcb https://www.encodeproject.org/files/ENCFF000VUF/@@download/ENCFF000VUF.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000VUU fastq reads ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 498872610 Michael Snyder, Stanford d3da121a3f993c6415bd26a997f707fe https://www.encodeproject.org/files/ENCFF000VUU/@@download/ENCFF000VUU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released moderate library complexity, inconsistent control read length, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000VUW fastq reads ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 975456486 Michael Snyder, Stanford 2480a4d7c374b56e50e7e06a4bf22ec4 https://www.encodeproject.org/files/ENCFF000VUW/@@download/ENCFF000VUW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released moderate library complexity, low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001VED bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1493975 Michael Snyder, Stanford 516f23be901386790d57744858feb099 https://www.encodeproject.org/files/ENCFF001VED/@@download/ENCFF001VED.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002COQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1184123 ENCODE Consortium Analysis Working Group bc28241ebe7f2e85f79563568ea724dc https://www.encodeproject.org/files/ENCFF002COQ/@@download/ENCFF002COQ.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF033WBF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COQ 2408937 ENCODE Consortium 2e42e8fce8766bf3c5fd4e6917912ea5 https://www.encodeproject.org/files/ENCFF033WBF/@@download/ENCFF033WBF.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF037QRA bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF643CGH 517503005 ENCODE Processing Pipeline 5a855ac4844d71ef8a1abef8320c7570 https://www.encodeproject.org/files/ENCFF037QRA/@@download/ENCFF037QRA.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF869TVW bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF643CGH 944065071 ENCODE Processing Pipeline 280a6076cb65995a9eca3f6d844b0d6f https://www.encodeproject.org/files/ENCFF869TVW/@@download/ENCFF869TVW.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF033WII bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF643CGH 305311464 ENCODE Processing Pipeline fcc12a1320bee85526d5fe8244996301 https://www.encodeproject.org/files/ENCFF033WII/@@download/ENCFF033WII.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF162QXM bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF643CGH 538905893 ENCODE Processing Pipeline 4fe6bbb98f94a950c4ba95cb84ecce3f https://www.encodeproject.org/files/ENCFF162QXM/@@download/ENCFF162QXM.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF124LLI bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF807MUK 941997706 ENCODE Processing Pipeline 40a7054926227de71641035bcff35e9b https://www.encodeproject.org/files/ENCFF124LLI/@@download/ENCFF124LLI.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF677ISQ bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF807MUK 515820343 ENCODE Processing Pipeline eea142f3ba19f30b06f91c005db67ce2 https://www.encodeproject.org/files/ENCFF677ISQ/@@download/ENCFF677ISQ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF584BRF bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF807MUK 304486465 ENCODE Processing Pipeline e605631568877c1172825b6dabc03f5a https://www.encodeproject.org/files/ENCFF584BRF/@@download/ENCFF584BRF.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF119SGJ bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF807MUK 538888360 ENCODE Processing Pipeline 23a5e8faa711ac4c449e7a135b621adc https://www.encodeproject.org/files/ENCFF119SGJ/@@download/ENCFF119SGJ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF799POZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710VEH 1325046 ENCODE Processing Pipeline 720a6a4191c6c1cc7106f005a0dffe35 https://www.encodeproject.org/files/ENCFF799POZ/@@download/ENCFF799POZ.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF578TBN bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 331292671 ENCODE Processing Pipeline ad8227742b009da81c2cdc954826c3f6 https://www.encodeproject.org/files/ENCFF578TBN/@@download/ENCFF578TBN.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF135JPN bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF529YRA 5628007 ENCODE Processing Pipeline 018b221fbd9b883f22959b2c6c5236c5 https://www.encodeproject.org/files/ENCFF135JPN/@@download/ENCFF135JPN.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF960ZGP bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100GSO, ENCFF117WKK, ENCFF419RSJ, ENCFF529YRA 705627 ENCODE Processing Pipeline 0f3674df76186be18d25ecc0ffcf3725 https://www.encodeproject.org/files/ENCFF960ZGP/@@download/ENCFF960ZGP.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF271YKQ bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 224632462 ENCODE Processing Pipeline c0faf5b5ea845af08d49b47137a8cd87 https://www.encodeproject.org/files/ENCFF271YKQ/@@download/ENCFF271YKQ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF737EHN bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 204106523 ENCODE Processing Pipeline 83da3ae20572783828ca31b4ef503899 https://www.encodeproject.org/files/ENCFF737EHN/@@download/ENCFF737EHN.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF421IOC bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 151263992 ENCODE Processing Pipeline 2c3848428152613653c24d7018ff8ea3 https://www.encodeproject.org/files/ENCFF421IOC/@@download/ENCFF421IOC.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF529YRA bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 2813118 ENCODE Processing Pipeline 90bc2c3005fc5db4ffdb6bbb8eb7ce38 https://www.encodeproject.org/files/ENCFF529YRA/@@download/ENCFF529YRA.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF481HZS bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 222389399 ENCODE Processing Pipeline 01c048d24e7ba20159182a62da398ca9 https://www.encodeproject.org/files/ENCFF481HZS/@@download/ENCFF481HZS.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF749HDD bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 194157298 ENCODE Processing Pipeline ad02e17fae574d9183a9c91f2e770da6 https://www.encodeproject.org/files/ENCFF749HDD/@@download/ENCFF749HDD.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF312KXX bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 331288517 ENCODE Processing Pipeline 617cd794ff920e9813488171ab2859d4 https://www.encodeproject.org/files/ENCFF312KXX/@@download/ENCFF312KXX.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF256QBB bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 3988271 ENCODE Processing Pipeline cf3777546d0abfe725a842aadb87a1ef https://www.encodeproject.org/files/ENCFF256QBB/@@download/ENCFF256QBB.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF307KRD bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 2707163 ENCODE Processing Pipeline 2f5800e66ceebed018a31ec8f28b889e https://www.encodeproject.org/files/ENCFF307KRD/@@download/ENCFF307KRD.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF833GQU bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 1978198 ENCODE Processing Pipeline 460493742288307995585489be7ba6bb https://www.encodeproject.org/files/ENCFF833GQU/@@download/ENCFF833GQU.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF517KJP bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF256QBB 7759390 ENCODE Processing Pipeline e4d3c60bb285d69045872be7b06cc4de https://www.encodeproject.org/files/ENCFF517KJP/@@download/ENCFF517KJP.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF585YVM bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF307KRD 5409546 ENCODE Processing Pipeline d2e23d650d7517e1466213c4060a0f6f https://www.encodeproject.org/files/ENCFF585YVM/@@download/ENCFF585YVM.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF669YEM bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF833GQU 4484870 ENCODE Processing Pipeline 3bff1df4091d8bb1fc5dd48a011df789 https://www.encodeproject.org/files/ENCFF669YEM/@@download/ENCFF669YEM.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF710VEH bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF256QBB, ENCFF307KRD, ENCFF833GQU 702399 ENCODE Processing Pipeline cc13297e7415d8e276f3516031835828 https://www.encodeproject.org/files/ENCFF710VEH/@@download/ENCFF710VEH.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF475JTC bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 222760094 ENCODE Processing Pipeline 333faa17ab2f0ea893bd839478700501 https://www.encodeproject.org/files/ENCFF475JTC/@@download/ENCFF475JTC.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF117WKK bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 4004974 ENCODE Processing Pipeline 9abd47eca17cd759ae473d8a34781f7c https://www.encodeproject.org/files/ENCFF117WKK/@@download/ENCFF117WKK.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF232FCT bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 211955342 ENCODE Processing Pipeline 21646b407b5ea525e170e42e2a026427 https://www.encodeproject.org/files/ENCFF232FCT/@@download/ENCFF232FCT.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF100GSO bed narrowPeak peaks and background as input for IDR ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 2012249 ENCODE Processing Pipeline 0aed950a86309798779db28d7393fdd4 https://www.encodeproject.org/files/ENCFF100GSO/@@download/ENCFF100GSO.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF328MFL bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF117WKK 7820055 ENCODE Processing Pipeline c54eba5ccc2a038382d0baab70ee4b23 https://www.encodeproject.org/files/ENCFF328MFL/@@download/ENCFF328MFL.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF925RST bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100GSO 4565708 ENCODE Processing Pipeline f5835feec1c98b922f2a470188a5bf1e https://www.encodeproject.org/files/ENCFF925RST/@@download/ENCFF925RST.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF267NYF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF960ZGP 1330821 ENCODE Processing Pipeline 8e22c1abf9f5d319c15f008b2616d64a https://www.encodeproject.org/files/ENCFF267NYF/@@download/ENCFF267NYF.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF414WYX bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 224513727 ENCODE Processing Pipeline d1407ae0155aa0fc8cc9b3c3f273ab95 https://www.encodeproject.org/files/ENCFF414WYX/@@download/ENCFF414WYX.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF997LDW bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 204900176 ENCODE Processing Pipeline c6ac5d2f9a87acdc5e39051916c311a0 https://www.encodeproject.org/files/ENCFF997LDW/@@download/ENCFF997LDW.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF636ODI bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 154927544 ENCODE Processing Pipeline 16b5b112985fe01e3c0c221fe85500bb https://www.encodeproject.org/files/ENCFF636ODI/@@download/ENCFF636ODI.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000WAF bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WAZ 316133403 Michael Snyder, Stanford ac7d8d056bb5589f85fe24427681b944 https://www.encodeproject.org/files/ENCFF000WAF/@@download/ENCFF000WAF.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WAG bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEW 1174908 Michael Snyder, Stanford 53ed74a4b7f72a04c826a6ffdef89353 https://www.encodeproject.org/files/ENCFF000WAG/@@download/ENCFF000WAG.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WAH bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WBG 620191363 Michael Snyder, Stanford e2491e58db8965b02c234aeea14a8d22 https://www.encodeproject.org/files/ENCFF000WAH/@@download/ENCFF000WAH.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WAI bigWig signal ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 360925414 Michael Snyder, Stanford 765b459aa819e711a12828aae5a40886 https://www.encodeproject.org/files/ENCFF000WAI/@@download/ENCFF000WAI.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000WAZ fastq reads ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 619848124 Michael Snyder, Stanford 2ac797daa40d827577085b0976b1e1ed https://www.encodeproject.org/files/ENCFF000WAZ/@@download/ENCFF000WAZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WBG fastq reads ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1477862389 Michael Snyder, Stanford 4a0b2956ab97dafef7538d2e546e8d19 https://www.encodeproject.org/files/ENCFF000WBG/@@download/ENCFF000WBG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001VEW bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 491672 Michael Snyder, Stanford c8249d08767057570f21318f8223290e https://www.encodeproject.org/files/ENCFF001VEW/@@download/ENCFF001VEW.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CPD bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 141778 ENCODE Consortium Analysis Working Group a1d333c58e9391193651f7f27ef10f3f https://www.encodeproject.org/files/ENCFF002CPD/@@download/ENCFF002CPD.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF119CMD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPD 360389 ENCODE Consortium 8ab28973b105c3dfa45e21d8e5a70d6f https://www.encodeproject.org/files/ENCFF119CMD/@@download/ENCFF119CMD.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF072DOQ bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF643CGH 1581037195 ENCODE Processing Pipeline 30beb9cd8e2140ccca39d3135c5a511b https://www.encodeproject.org/files/ENCFF072DOQ/@@download/ENCFF072DOQ.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF910PTH bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF643CGH 358293764 ENCODE Processing Pipeline 477cd0b185bce4a19bea97b1c91c3126 https://www.encodeproject.org/files/ENCFF910PTH/@@download/ENCFF910PTH.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF752ACP bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF643CGH 658229107 ENCODE Processing Pipeline e312fc73453814f45654ccd5e03c7908 https://www.encodeproject.org/files/ENCFF752ACP/@@download/ENCFF752ACP.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF486EWS bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF643CGH 906754509 ENCODE Processing Pipeline 1a12d6499690b9ab5e9421d6125a80c8 https://www.encodeproject.org/files/ENCFF486EWS/@@download/ENCFF486EWS.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF450FPZ bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF807MUK 655945858 ENCODE Processing Pipeline 9f5c6f02f2143e490341f5229663935c https://www.encodeproject.org/files/ENCFF450FPZ/@@download/ENCFF450FPZ.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF229PFV bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF807MUK 355414673 ENCODE Processing Pipeline d7eaca0a90dbe725755c1cfba651662c https://www.encodeproject.org/files/ENCFF229PFV/@@download/ENCFF229PFV.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF819KIB bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF807MUK 1573791313 ENCODE Processing Pipeline f76e475eccbdb12373e8d6c2a721d46a https://www.encodeproject.org/files/ENCFF819KIB/@@download/ENCFF819KIB.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF716DZQ bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF807MUK 906580500 ENCODE Processing Pipeline fa0084a8bf986fb1df9dc92f53494f8a https://www.encodeproject.org/files/ENCFF716DZQ/@@download/ENCFF716DZQ.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF734MZW bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 182985926 ENCODE Processing Pipeline f9ab483793c3fd3a43e06a5dd1f57f11 https://www.encodeproject.org/files/ENCFF734MZW/@@download/ENCFF734MZW.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF271KJR bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 183082665 ENCODE Processing Pipeline c56d48f0077e5c4b5886f3ac87f15e8b https://www.encodeproject.org/files/ENCFF271KJR/@@download/ENCFF271KJR.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF280ZOQ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 155173339 ENCODE Processing Pipeline a544f2e8a41192184ba46c37ed8bbb65 https://www.encodeproject.org/files/ENCFF280ZOQ/@@download/ENCFF280ZOQ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF415AUS bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 71452581 ENCODE Processing Pipeline c4aa1823371609e1981043788ae8e36b https://www.encodeproject.org/files/ENCFF415AUS/@@download/ENCFF415AUS.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF932ZKX bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 156494668 ENCODE Processing Pipeline 1810c26bd51c4e7cd1d8ff36673755ef https://www.encodeproject.org/files/ENCFF932ZKX/@@download/ENCFF932ZKX.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF323SMV bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 457480059 ENCODE Processing Pipeline 3b8ef6bd8fcfce33179fd3cf8f275539 https://www.encodeproject.org/files/ENCFF323SMV/@@download/ENCFF323SMV.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF931XAL bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF502JYT, ENCFF562LQW, ENCFF789TQP 90284 ENCODE Processing Pipeline 49b2701b7ddb6de70c1f665a1d884702 https://www.encodeproject.org/files/ENCFF931XAL/@@download/ENCFF931XAL.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF944FSS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF931XAL 200403 ENCODE Processing Pipeline 11bd51ebb2c4b863bd754f1fdc1f88e3 https://www.encodeproject.org/files/ENCFF944FSS/@@download/ENCFF944FSS.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF199BHM bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF502JYT 9777384 ENCODE Processing Pipeline 7f8274535aebed086023f9ca2c93dfdc https://www.encodeproject.org/files/ENCFF199BHM/@@download/ENCFF199BHM.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF240QXY bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF787JPP 1911413 ENCODE Processing Pipeline 2d8963ea1defc4b659828680dea3fcbb https://www.encodeproject.org/files/ENCFF240QXY/@@download/ENCFF240QXY.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF656ATE bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF930PRH 9773800 ENCODE Processing Pipeline 3a230bb154f1dcc2773dd855833f239c https://www.encodeproject.org/files/ENCFF656ATE/@@download/ENCFF656ATE.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF893ENN bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 159020268 ENCODE Processing Pipeline d58a3004472bc666009ea7949da1cbf3 https://www.encodeproject.org/files/ENCFF893ENN/@@download/ENCFF893ENN.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF789TQP bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 903479 ENCODE Processing Pipeline ac6d0a60a78a1be58526956c957270ac https://www.encodeproject.org/files/ENCFF789TQP/@@download/ENCFF789TQP.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF611AMZ bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 72671028 ENCODE Processing Pipeline c3af007852a8580f34e9356aeaa7d9b7 https://www.encodeproject.org/files/ENCFF611AMZ/@@download/ENCFF611AMZ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF039VCK bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 160063651 ENCODE Processing Pipeline 95e651d984c2bbb0b74774579d048a19 https://www.encodeproject.org/files/ENCFF039VCK/@@download/ENCFF039VCK.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF293CPQ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 463206464 ENCODE Processing Pipeline ffc534590a94fc69cc5f926786559014 https://www.encodeproject.org/files/ENCFF293CPQ/@@download/ENCFF293CPQ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF645GWJ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 295625448 ENCODE Processing Pipeline f4c1b322bf27805a73d0ca4646c124f4 https://www.encodeproject.org/files/ENCFF645GWJ/@@download/ENCFF645GWJ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF221NFI bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058MCE 10785594 ENCODE Processing Pipeline c679ba6ab56d72209cc0fb370d4f3b0b https://www.encodeproject.org/files/ENCFF221NFI/@@download/ENCFF221NFI.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF652BRY bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058MCE, ENCFF419RSJ, ENCFF787JPP, ENCFF930PRH 89258 ENCODE Processing Pipeline 074167810e21167ebe5514044b7a9555 https://www.encodeproject.org/files/ENCFF652BRY/@@download/ENCFF652BRY.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF500DRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF652BRY 199152 ENCODE Processing Pipeline a2b4253fc491a7497f734cd2c37e449e https://www.encodeproject.org/files/ENCFF500DRR/@@download/ENCFF500DRR.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF448TMI bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 304178484 ENCODE Processing Pipeline b1ab86d54b6e658ab885dc38338a931d https://www.encodeproject.org/files/ENCFF448TMI/@@download/ENCFF448TMI.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF502JYT bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 3645251 ENCODE Processing Pipeline 9595fd26369e5f64ce4bce97ca41d979 https://www.encodeproject.org/files/ENCFF502JYT/@@download/ENCFF502JYT.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF562LQW bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 4231032 ENCODE Processing Pipeline ca13261b33aba93fa7c70526709557d2 https://www.encodeproject.org/files/ENCFF562LQW/@@download/ENCFF562LQW.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF123POF bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF789TQP 2038170 ENCODE Processing Pipeline 712c483cc807436767d766df91209b59 https://www.encodeproject.org/files/ENCFF123POF/@@download/ENCFF123POF.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF787JPP bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 851535 ENCODE Processing Pipeline 9f5c13ffdf3ff1b5d567cec9758613e4 https://www.encodeproject.org/files/ENCFF787JPP/@@download/ENCFF787JPP.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF622WFK bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF562LQW 10789713 ENCODE Processing Pipeline ed05bc49f6c94682b2509e8ab5bd99de https://www.encodeproject.org/files/ENCFF622WFK/@@download/ENCFF622WFK.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF930PRH bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 3640787 ENCODE Processing Pipeline 0f1dc673966fb8352a7b708eb1c21783 https://www.encodeproject.org/files/ENCFF930PRH/@@download/ENCFF930PRH.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF058MCE bed narrowPeak peaks and background as input for IDR ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 4230995 ENCODE Processing Pipeline dfb7e117dd615fb21161ad0bf8ededde https://www.encodeproject.org/files/ENCFF058MCE/@@download/ENCFF058MCE.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WGY bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VFW 2022637 Michael Snyder, Stanford 0da4c6dfbecc20139fb4d448278629c2 https://www.encodeproject.org/files/ENCFF000WGY/@@download/ENCFF000WGY.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WGZ fastq reads ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1035118917 Michael Snyder, Stanford df7105f01da2cca3d5b4e6f1d65bea4b https://www.encodeproject.org/files/ENCFF000WGZ/@@download/ENCFF000WGZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released borderline replicate concordance, low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WHB fastq reads ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1083417620 Michael Snyder, Stanford abb65cbe31cdbadcbce689731446dd67 https://www.encodeproject.org/files/ENCFF000WHB/@@download/ENCFF000WHB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released borderline replicate concordance, low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000WHD bigWig signal ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 405389544 Michael Snyder, Stanford 2b555fd69db81e8b21940eee373ca3de https://www.encodeproject.org/files/ENCFF000WHD/@@download/ENCFF000WHD.bigWig hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000WHE bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 577499091 Michael Snyder, Stanford 49d8909604390e7a7f9ff96586c4b01a https://www.encodeproject.org/files/ENCFF000WHE/@@download/ENCFF000WHE.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000WHF bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 558522412 Michael Snyder, Stanford 93cb657f94588370c69cdc4fdf5477a0 https://www.encodeproject.org/files/ENCFF000WHF/@@download/ENCFF000WHF.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001VFW bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 940707 Michael Snyder, Stanford 49ca7bb79844efd93e8df6ae931feb72 https://www.encodeproject.org/files/ENCFF001VFW/@@download/ENCFF001VFW.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF067MJG bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF643CGH 1083943653 ENCODE Processing Pipeline 1087f90ddf6d9cbef5e92e0d579c308d https://www.encodeproject.org/files/ENCFF067MJG/@@download/ENCFF067MJG.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF752WMS bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF643CGH 1050000949 ENCODE Processing Pipeline 6e327890f57a8d5ae3731f1170931166 https://www.encodeproject.org/files/ENCFF752WMS/@@download/ENCFF752WMS.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF055QMP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF643CGH 650158600 ENCODE Processing Pipeline ff66586806dd0483b810b46aeebffc91 https://www.encodeproject.org/files/ENCFF055QMP/@@download/ENCFF055QMP.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF230KKA bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF643CGH 630534023 ENCODE Processing Pipeline c26f221e59a03016e91563a14a503e3b https://www.encodeproject.org/files/ENCFF230KKA/@@download/ENCFF230KKA.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF725PVP bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF807MUK 1080137565 ENCODE Processing Pipeline ee09e75fa775419efdb2f900692074c8 https://www.encodeproject.org/files/ENCFF725PVP/@@download/ENCFF725PVP.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF440GGE bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF807MUK 1046313980 ENCODE Processing Pipeline 5fb24876aba4427e84b87928916a1d58 https://www.encodeproject.org/files/ENCFF440GGE/@@download/ENCFF440GGE.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF597SZP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF807MUK 630010080 ENCODE Processing Pipeline e00333442fa1995a6921b6cc55bd6e1a https://www.encodeproject.org/files/ENCFF597SZP/@@download/ENCFF597SZP.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF463YMY bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF807MUK 650088239 ENCODE Processing Pipeline a4766d4bbb9adf84e03c6c23ceafbaea https://www.encodeproject.org/files/ENCFF463YMY/@@download/ENCFF463YMY.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF349DDI bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 283543984 ENCODE Processing Pipeline aea6ec62c75c6ed8a21419054adc248c https://www.encodeproject.org/files/ENCFF349DDI/@@download/ENCFF349DDI.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF967EHX bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 4220480 ENCODE Processing Pipeline a87b9a89e23b58761891171cd2a7972f https://www.encodeproject.org/files/ENCFF967EHX/@@download/ENCFF967EHX.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF824VGN bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 4689216 ENCODE Processing Pipeline 3f105e7014be85554c981a136d1b9472 https://www.encodeproject.org/files/ENCFF824VGN/@@download/ENCFF824VGN.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF782DOW bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF967EHX 10137400 ENCODE Processing Pipeline 99585b93a75fd5bf3420df3e82e4a77d https://www.encodeproject.org/files/ENCFF782DOW/@@download/ENCFF782DOW.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF475FED bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 72860400 ENCODE Processing Pipeline d38a1497b19fbe0c707b6f24b294f213 https://www.encodeproject.org/files/ENCFF475FED/@@download/ENCFF475FED.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF957MTQ bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 489873083 ENCODE Processing Pipeline 5c0f6b5730d26651aea21488e1f00f37 https://www.encodeproject.org/files/ENCFF957MTQ/@@download/ENCFF957MTQ.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF099BRN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF229WZB 397573 ENCODE Processing Pipeline 85c4f09c3f06076555a83cf1baf12bd3 https://www.encodeproject.org/files/ENCFF099BRN/@@download/ENCFF099BRN.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF529JYR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF371OGO 485331 ENCODE Processing Pipeline 23bd1b0c64116d0fdc19474df43d7aab https://www.encodeproject.org/files/ENCFF529JYR/@@download/ENCFF529JYR.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF745TRP bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 3520183 ENCODE Processing Pipeline 11415e78052308ca558ce5c13a8f6440 https://www.encodeproject.org/files/ENCFF745TRP/@@download/ENCFF745TRP.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF229WZB bed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF745TRP, ENCFF824VGN, ENCFF967EHX 194487 ENCODE Processing Pipeline a464c901a224ded5c747b9d68a9387a5 https://www.encodeproject.org/files/ENCFF229WZB/@@download/ENCFF229WZB.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF172WNC bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 175244168 ENCODE Processing Pipeline 34493d39b8ecf99fedf839d660de7508 https://www.encodeproject.org/files/ENCFF172WNC/@@download/ENCFF172WNC.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF177KFY bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 220231867 ENCODE Processing Pipeline 0388528997246ec96f4e0fecb57045ca https://www.encodeproject.org/files/ENCFF177KFY/@@download/ENCFF177KFY.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF989OMR bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 166430988 ENCODE Processing Pipeline cf52db59b9389ad71ceaf4e57c0ea70d https://www.encodeproject.org/files/ENCFF989OMR/@@download/ENCFF989OMR.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF406CGP bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF745TRP 7442889 ENCODE Processing Pipeline 7ed8a3ad50904f0337defb4f729b81c4 https://www.encodeproject.org/files/ENCFF406CGP/@@download/ENCFF406CGP.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF278MAE bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF824VGN 11047203 ENCODE Processing Pipeline 04be2145724e663562dc482553597acc https://www.encodeproject.org/files/ENCFF278MAE/@@download/ENCFF278MAE.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF371OGO bed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF745TRP, ENCFF824VGN, ENCFF967EHX 253028 ENCODE Processing Pipeline d302851e104dd8ae0a5b6a49c01de18c https://www.encodeproject.org/files/ENCFF371OGO/@@download/ENCFF371OGO.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF988BRZ bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 172531825 ENCODE Processing Pipeline a74aa833bf3e1f0e762e94d13bcad8bf https://www.encodeproject.org/files/ENCFF988BRZ/@@download/ENCFF988BRZ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF363DAX bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 281042650 ENCODE Processing Pipeline 64f52d9b03501ace5b88122ef7fd33c7 https://www.encodeproject.org/files/ENCFF363DAX/@@download/ENCFF363DAX.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF186SYA bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 219590743 ENCODE Processing Pipeline a71fa2aee065aebad8b96aee4874bbcf https://www.encodeproject.org/files/ENCFF186SYA/@@download/ENCFF186SYA.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF844WJC bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 4217771 ENCODE Processing Pipeline d2620a0faa93ede533fd932817fab001 https://www.encodeproject.org/files/ENCFF844WJC/@@download/ENCFF844WJC.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF198HWX bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 3522543 ENCODE Processing Pipeline 3243e9d94dbdf9c639b477aea905f971 https://www.encodeproject.org/files/ENCFF198HWX/@@download/ENCFF198HWX.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF246PNH bed narrowPeak peaks and background as input for IDR ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 4694677 ENCODE Processing Pipeline 39cb25d1ea7891b38f47865aa0731533 https://www.encodeproject.org/files/ENCFF246PNH/@@download/ENCFF246PNH.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF301WDP bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF844WJC 10139845 ENCODE Processing Pipeline dbf8632e4a554b34df5b1caed3959e5c https://www.encodeproject.org/files/ENCFF301WDP/@@download/ENCFF301WDP.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF909FAL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF942MDT 491729 ENCODE Processing Pipeline 2a3968a421fe7b5feb27d7cb4b6df439 https://www.encodeproject.org/files/ENCFF909FAL/@@download/ENCFF909FAL.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF300VXO bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 166478559 ENCODE Processing Pipeline c51d69ef390a166c087d005db9279f6a https://www.encodeproject.org/files/ENCFF300VXO/@@download/ENCFF300VXO.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF621SCQ bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF246PNH 11052625 ENCODE Processing Pipeline a6b385e11b62733806c2340567944c19 https://www.encodeproject.org/files/ENCFF621SCQ/@@download/ENCFF621SCQ.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF324LIJ bed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF198HWX, ENCFF246PNH, ENCFF419RSJ, ENCFF844WJC 197031 ENCODE Processing Pipeline b7d23ef768bd757ca692c86179b91924 https://www.encodeproject.org/files/ENCFF324LIJ/@@download/ENCFF324LIJ.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF942MDT bed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF198HWX, ENCFF246PNH, ENCFF419RSJ, ENCFF844WJC 257837 ENCODE Processing Pipeline 0d313660b213facd5683cf5baf9b9190 https://www.encodeproject.org/files/ENCFF942MDT/@@download/ENCFF942MDT.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF785JRJ bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 72879417 ENCODE Processing Pipeline 84b0d30d7f8fbb79d0dc64464339cb13 https://www.encodeproject.org/files/ENCFF785JRJ/@@download/ENCFF785JRJ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF469XZI bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 490724546 ENCODE Processing Pipeline 0ec8022983299aa8f52a1cfe81e7d76d https://www.encodeproject.org/files/ENCFF469XZI/@@download/ENCFF469XZI.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF188SDF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF324LIJ 401560 ENCODE Processing Pipeline 2d57e48b91ce3a31deb244f92efbdafa https://www.encodeproject.org/files/ENCFF188SDF/@@download/ENCFF188SDF.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF688QSS bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF198HWX 7446031 ENCODE Processing Pipeline 33a6be1c7ad6c3e06272fcb10cac6896 https://www.encodeproject.org/files/ENCFF688QSS/@@download/ENCFF688QSS.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VUG bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 1 528902339 Michael Snyder, Stanford 9ccc6afc6499fa96e8af6b93bb3a3c39 https://www.encodeproject.org/files/ENCFF000VUG/@@download/ENCFF000VUG.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VUH bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 1 619299146 Michael Snyder, Stanford 5fd5098812b16ba7ea54b3a2540d3d20 https://www.encodeproject.org/files/ENCFF000VUH/@@download/ENCFF000VUH.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VUI bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEE 353670 Michael Snyder, Stanford 6e5e1ca8ff3e6ef19ea78b3fce45fd9d https://www.encodeproject.org/files/ENCFF000VUI/@@download/ENCFF000VUI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VUJ fastq reads ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 904064332 Michael Snyder, Stanford 66fbeb5f05fa677f586b5baa9c0ea687 https://www.encodeproject.org/files/ENCFF000VUJ/@@download/ENCFF000VUJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VUL fastq reads ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1071631270 Michael Snyder, Stanford c9437c2495ceabf169364c2e44b48e86 https://www.encodeproject.org/files/ENCFF000VUL/@@download/ENCFF000VUL.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VUN bigWig signal ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 256792396 Michael Snyder, Stanford 20869ed39ea25615b34d6e6f732aff06 https://www.encodeproject.org/files/ENCFF000VUN/@@download/ENCFF000VUN.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VEE bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 144487 Michael Snyder, Stanford d91c60a45bde38fbb0180074759b8c03 https://www.encodeproject.org/files/ENCFF001VEE/@@download/ENCFF001VEE.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COR bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 91273 ENCODE Consortium Analysis Working Group 6c7a8a4cdae4db29921014968fe79a1f https://www.encodeproject.org/files/ENCFF002COR/@@download/ENCFF002COR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF758FQD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COR 328389 ENCODE Consortium 606a69065c2fff20b5af7c9309e0c450 https://www.encodeproject.org/files/ENCFF758FQD/@@download/ENCFF758FQD.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF189DMF bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF643CGH 735651956 ENCODE Processing Pipeline b13ca4c87c6add46e307fa3288781efe https://www.encodeproject.org/files/ENCFF189DMF/@@download/ENCFF189DMF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF781WSB bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF643CGH 933520367 ENCODE Processing Pipeline 8018f202b42f8179c31f8576129972e8 https://www.encodeproject.org/files/ENCFF781WSB/@@download/ENCFF781WSB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF926BIU bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF643CGH 606772471 ENCODE Processing Pipeline 9a89b67e1c96ff07478d3dcbf0297867 https://www.encodeproject.org/files/ENCFF926BIU/@@download/ENCFF926BIU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF804JMX bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF643CGH 1115269870 ENCODE Processing Pipeline a6998c71d1f5edec2faad6f93728e657 https://www.encodeproject.org/files/ENCFF804JMX/@@download/ENCFF804JMX.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF285WSG bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF807MUK 929826777 ENCODE Processing Pipeline 8f6bbfe1b98f6819141cd5dd70229964 https://www.encodeproject.org/files/ENCFF285WSG/@@download/ENCFF285WSG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF960CBP bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF807MUK 1110646319 ENCODE Processing Pipeline 6896d4ac923260fd9904711ebe163006 https://www.encodeproject.org/files/ENCFF960CBP/@@download/ENCFF960CBP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF169ZIP bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF807MUK 735482157 ENCODE Processing Pipeline 23defd2ec4eee71976ac4af442f6d17f https://www.encodeproject.org/files/ENCFF169ZIP/@@download/ENCFF169ZIP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF597JXK bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF807MUK 606881201 ENCODE Processing Pipeline d536306144f40671ca7b8c6467a0e209 https://www.encodeproject.org/files/ENCFF597JXK/@@download/ENCFF597JXK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF073KLS bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191NQS 9735074 ENCODE Processing Pipeline 74150ba427f71aeb1a1f7ff151f374e7 https://www.encodeproject.org/files/ENCFF073KLS/@@download/ENCFF073KLS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF507BWP bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 263012853 ENCODE Processing Pipeline 394d8f035dc2765e02c6a304588f59c4 https://www.encodeproject.org/files/ENCFF507BWP/@@download/ENCFF507BWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF795KLW bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 154131368 ENCODE Processing Pipeline 823f5ab792613cdf31188b0584614f9b https://www.encodeproject.org/files/ENCFF795KLW/@@download/ENCFF795KLW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF371NNZ bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 259360946 ENCODE Processing Pipeline 723d2c3c8a62d2059395c0b62586575f https://www.encodeproject.org/files/ENCFF371NNZ/@@download/ENCFF371NNZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF191NQS bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 3873486 ENCODE Processing Pipeline 0554fc80e5ff413de68ad8b01bde8c66 https://www.encodeproject.org/files/ENCFF191NQS/@@download/ENCFF191NQS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF683PLX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF850MAC 173157 ENCODE Processing Pipeline 2df1b597831b79017e9f5355ae640c57 https://www.encodeproject.org/files/ENCFF683PLX/@@download/ENCFF683PLX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF089IJA bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 171709217 ENCODE Processing Pipeline 10c56b3eb0ef924137ff335dfce176bf https://www.encodeproject.org/files/ENCFF089IJA/@@download/ENCFF089IJA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF018XHQ bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 72799651 ENCODE Processing Pipeline b1b69146608cf89f062b3b4331dec487 https://www.encodeproject.org/files/ENCFF018XHQ/@@download/ENCFF018XHQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF926RPL bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 511029366 ENCODE Processing Pipeline 1e90e98b639c60d22bb0158bdcecf3e0 https://www.encodeproject.org/files/ENCFF926RPL/@@download/ENCFF926RPL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF128GGA bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 3703960 ENCODE Processing Pipeline b202a9dadaea6440fee22d78cd1f676e https://www.encodeproject.org/files/ENCFF128GGA/@@download/ENCFF128GGA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF324TDX bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF319MWF 10996554 ENCODE Processing Pipeline 5d833b7c27e4bb0ccc81ef2c8523dafc https://www.encodeproject.org/files/ENCFF324TDX/@@download/ENCFF324TDX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF319MWF bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 4482472 ENCODE Processing Pipeline 00dd5cb031d39f2eab7febd42ac8b21e https://www.encodeproject.org/files/ENCFF319MWF/@@download/ENCFF319MWF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF757FAQ bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF128GGA 9798650 ENCODE Processing Pipeline aa88b9f1571187a86abac92bdb406723 https://www.encodeproject.org/files/ENCFF757FAQ/@@download/ENCFF757FAQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF850MAC bed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF128GGA, ENCFF191NQS, ENCFF319MWF 74207 ENCODE Processing Pipeline a802c49dd599c4a87c8719a78c5d77f8 https://www.encodeproject.org/files/ENCFF850MAC/@@download/ENCFF850MAC.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF433PFN bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF128GGA, ENCFF191NQS, ENCFF319MWF 85609 ENCODE Processing Pipeline 62c04d74d3bb8393fd21d79f6d87f4c0 https://www.encodeproject.org/files/ENCFF433PFN/@@download/ENCFF433PFN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF544GDN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF433PFN 189484 ENCODE Processing Pipeline 841a0522abc456c22e0a1e9cbf84e4b2 https://www.encodeproject.org/files/ENCFF544GDN/@@download/ENCFF544GDN.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF619JWG bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 265825153 ENCODE Processing Pipeline 5f093c852cb83e1fd1231630d26b5205 https://www.encodeproject.org/files/ENCFF619JWG/@@download/ENCFF619JWG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF662YTA bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 258651771 ENCODE Processing Pipeline dfd4e4319112c275043be005c42523a9 https://www.encodeproject.org/files/ENCFF662YTA/@@download/ENCFF662YTA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF417WYL bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 512846790 ENCODE Processing Pipeline fcb3f3f9ae6f14631813f7e4c904ce9c https://www.encodeproject.org/files/ENCFF417WYL/@@download/ENCFF417WYL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF095TZR bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV 11009811 ENCODE Processing Pipeline 89f9bc4dd625274826b35592ba7da018 https://www.encodeproject.org/files/ENCFF095TZR/@@download/ENCFF095TZR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF896OWK bed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV, ENCFF375BHX, ENCFF419RSJ, ENCFF852HEH 75423 ENCODE Processing Pipeline f8d2c6d0c4f16897f4575e0dcd3f36cd https://www.encodeproject.org/files/ENCFF896OWK/@@download/ENCFF896OWK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF172ILV bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF375BHX 9735390 ENCODE Processing Pipeline ffe9f800c25d0509398551b797bfef69 https://www.encodeproject.org/files/ENCFF172ILV/@@download/ENCFF172ILV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF159KDE bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 153550252 ENCODE Processing Pipeline 0f495462bced7c2df49d0f9c30785848 https://www.encodeproject.org/files/ENCFF159KDE/@@download/ENCFF159KDE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF830SRX bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF852HEH 9803963 ENCODE Processing Pipeline d64f3606fd86d2b789bfad7e72ee5cf2 https://www.encodeproject.org/files/ENCFF830SRX/@@download/ENCFF830SRX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF310BBF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF896OWK 175045 ENCODE Processing Pipeline db92488b136347694c992c3c5b0a34e1 https://www.encodeproject.org/files/ENCFF310BBF/@@download/ENCFF310BBF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF687SFB bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV, ENCFF375BHX, ENCFF419RSJ, ENCFF852HEH 83076 ENCODE Processing Pipeline 563c0d5cee7b626c61508bddca8d0fa4 https://www.encodeproject.org/files/ENCFF687SFB/@@download/ENCFF687SFB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF104LQU bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 172546145 ENCODE Processing Pipeline 827ff4588020505faf52cc8e317a282c https://www.encodeproject.org/files/ENCFF104LQU/@@download/ENCFF104LQU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF335XQU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF687SFB 185931 ENCODE Processing Pipeline 4ab26004ce7aa98e7985a827f6be1f58 https://www.encodeproject.org/files/ENCFF335XQU/@@download/ENCFF335XQU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF329EHG bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 72905782 ENCODE Processing Pipeline 3f3d21f9eda0574b5c9543f73481b591 https://www.encodeproject.org/files/ENCFF329EHG/@@download/ENCFF329EHG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF375BHX bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 3873715 ENCODE Processing Pipeline 566e9bcf9a35a21d6224aac4cbec49fd https://www.encodeproject.org/files/ENCFF375BHX/@@download/ENCFF375BHX.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF852HEH bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 3703379 ENCODE Processing Pipeline d33be22f266135cb7edcfa60b1c1e4a6 https://www.encodeproject.org/files/ENCFF852HEH/@@download/ENCFF852HEH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF132LKV bed narrowPeak peaks and background as input for IDR ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 4498903 ENCODE Processing Pipeline 2c71d0709fc116cda6a57750f3ee2851 https://www.encodeproject.org/files/ENCFF132LKV/@@download/ENCFF132LKV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF938ZZA bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF807MUK 5259175137 ENCODE Processing Pipeline da83488ebbb92b1b0bf85aac03f07a86 https://www.encodeproject.org/files/ENCFF938ZZA/@@download/ENCFF938ZZA.bam hg19 released mild to moderate bottlenecking ENCFF038JKO bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF807MUK 5252361138 ENCODE Processing Pipeline a9e684658b8e68b29935b3a015b735f1 https://www.encodeproject.org/files/ENCFF038JKO/@@download/ENCFF038JKO.bam hg19 released mild to moderate bottlenecking ENCFF368HQB bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1091829949 ENCODE Processing Pipeline e67147fb5134317fb467160ffb8f1097 https://www.encodeproject.org/files/ENCFF368HQB/@@download/ENCFF368HQB.bigWig hg19 released mild to moderate bottlenecking ENCFF946NKX bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1121284305 ENCODE Processing Pipeline ab7161aaba9d0cc8fae759748a53a52f https://www.encodeproject.org/files/ENCFF946NKX/@@download/ENCFF946NKX.bigWig hg19 released mild to moderate bottlenecking ENCFF002EKK fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKO 2411503282 Michael Snyder, Stanford 0f0fd8ea5fb9948458b4f2efaa74f6c6 SRA:SRR5111548 https://www.encodeproject.org/files/ENCFF002EKK/@@download/ENCFF002EKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF002EKL fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKR 2414375376 Michael Snyder, Stanford adc58dbcc628d6dfcc07e99bc2c539fb SRA:SRR5111549 https://www.encodeproject.org/files/ENCFF002EKL/@@download/ENCFF002EKL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking ENCFF002EKO fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKK 2486125262 Michael Snyder, Stanford 73c95123cfb212d062265f7c2f5c9af8 SRA:SRR5111548 https://www.encodeproject.org/files/ENCFF002EKO/@@download/ENCFF002EKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF002EKR fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EKL 2477722525 Michael Snyder, Stanford 26eee5026107bdbaabafecdf4d3e2c85 SRA:SRR5111549 https://www.encodeproject.org/files/ENCFF002EKR/@@download/ENCFF002EKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking ENCFF294PGV bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5612376 ENCODE Processing Pipeline 0b23ee499ba75b482e1616b4acba89ad https://www.encodeproject.org/files/ENCFF294PGV/@@download/ENCFF294PGV.bed.gz hg19 released mild to moderate bottlenecking ENCFF527ONY bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5472017 ENCODE Processing Pipeline 42824a013f1513874aafba1837a83137 https://www.encodeproject.org/files/ENCFF527ONY/@@download/ENCFF527ONY.bed.gz hg19 released mild to moderate bottlenecking ENCFF211AWN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF942POQ 11474856 ENCODE Processing Pipeline f26ea6a02c330f25b28ecac29e1c6405 https://www.encodeproject.org/files/ENCFF211AWN/@@download/ENCFF211AWN.bigBed hg19 released mild to moderate bottlenecking ENCFF942POQ bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 6836198 ENCODE Processing Pipeline 1f9227a143a5d1572ff45ca1c1e20e56 https://www.encodeproject.org/files/ENCFF942POQ/@@download/ENCFF942POQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF472PDP bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF294PGV 11457307 ENCODE Processing Pipeline 944f89b611f81479aaeb109b8f8bbb4e https://www.encodeproject.org/files/ENCFF472PDP/@@download/ENCFF472PDP.bigBed hg19 released mild to moderate bottlenecking ENCFF086UZN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF527ONY 11537103 ENCODE Processing Pipeline e50dfb02299f2ce366546392864a530c https://www.encodeproject.org/files/ENCFF086UZN/@@download/ENCFF086UZN.bigBed hg19 released mild to moderate bottlenecking ENCFF341HWZ bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF294PGV, ENCFF527ONY, ENCFF942POQ 94616 ENCODE Processing Pipeline c59b54537720fe013b61c273bcdb7db5 https://www.encodeproject.org/files/ENCFF341HWZ/@@download/ENCFF341HWZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF742LLN bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF294PGV, ENCFF527ONY, ENCFF942POQ 54792 ENCODE Processing Pipeline d39c411d0f2d16675656a3266c196d5c https://www.encodeproject.org/files/ENCFF742LLN/@@download/ENCFF742LLN.bed.gz hg19 released mild to moderate bottlenecking ENCFF512ITG bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF742LLN 149164 ENCODE Processing Pipeline f71495efeaf419e6ca9fdb83ac4ab0bc https://www.encodeproject.org/files/ENCFF512ITG/@@download/ENCFF512ITG.bigBed hg19 released mild to moderate bottlenecking ENCFF645ODN bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF341HWZ 204826 ENCODE Processing Pipeline bc5018a7351b341383e53d26820fe591 https://www.encodeproject.org/files/ENCFF645ODN/@@download/ENCFF645ODN.bigBed hg19 released mild to moderate bottlenecking ENCFF327BYF bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF807MUK 4173101310 ENCODE Processing Pipeline 97583b24bdf8164e16ccf3353485d032 https://www.encodeproject.org/files/ENCFF327BYF/@@download/ENCFF327BYF.bam hg19 released mild to moderate bottlenecking ENCFF288FXI bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF807MUK 4164373576 ENCODE Processing Pipeline 720c1767caa1da842d7401fbbb8f89b6 https://www.encodeproject.org/files/ENCFF288FXI/@@download/ENCFF288FXI.bam hg19 released mild to moderate bottlenecking ENCFF205XGK bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 1100831207 ENCODE Processing Pipeline 77fe221312e54e74b976574d933dfa9c https://www.encodeproject.org/files/ENCFF205XGK/@@download/ENCFF205XGK.bigWig hg19 released mild to moderate bottlenecking ENCFF785IVC bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1095563841 ENCODE Processing Pipeline 2da78a8be889b394042952042c1b176d https://www.encodeproject.org/files/ENCFF785IVC/@@download/ENCFF785IVC.bigWig hg19 archived mild to moderate bottlenecking ENCFF076JXG bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 1995119381 ENCODE Processing Pipeline e21dc51869650f0cd98d079d522fc387 https://www.encodeproject.org/files/ENCFF076JXG/@@download/ENCFF076JXG.bigWig hg19 released mild to moderate bottlenecking ENCFF646CCS bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 1199015691 ENCODE Processing Pipeline 36d05eddd95d4bdd5a989d10a84c2a64 https://www.encodeproject.org/files/ENCFF646CCS/@@download/ENCFF646CCS.bigWig hg19 released mild to moderate bottlenecking ENCFF989VXX bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1128754849 ENCODE Processing Pipeline 221bf9446eee2903cc33fd5b5c289ab4 https://www.encodeproject.org/files/ENCFF989VXX/@@download/ENCFF989VXX.bigWig hg19 archived mild to moderate bottlenecking ENCFF785IFK bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 2220415099 ENCODE Processing Pipeline c2ae04d425741268783b01ee3b391228 https://www.encodeproject.org/files/ENCFF785IFK/@@download/ENCFF785IFK.bigWig hg19 released mild to moderate bottlenecking ENCFF789FWH bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5671340 ENCODE Processing Pipeline 69423bde704039a08639185373c99a15 https://www.encodeproject.org/files/ENCFF789FWH/@@download/ENCFF789FWH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF706IKA bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5813485 ENCODE Processing Pipeline 80cee6f29bd85bbc394a23091e4398f8 https://www.encodeproject.org/files/ENCFF706IKA/@@download/ENCFF706IKA.bed.gz hg19 archived mild to moderate bottlenecking ENCFF035PSF bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 6940511 ENCODE Processing Pipeline c4d1fee7d4f04427937b232282fbc4f6 https://www.encodeproject.org/files/ENCFF035PSF/@@download/ENCFF035PSF.bed.gz hg19 archived mild to moderate bottlenecking ENCFF336BNP bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF706IKA 11483437 ENCODE Processing Pipeline 4ff5bc524d77beea5b13c687fa9b6f9b https://www.encodeproject.org/files/ENCFF336BNP/@@download/ENCFF336BNP.bigBed hg19 archived mild to moderate bottlenecking ENCFF081AGJ bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF789FWH 11574114 ENCODE Processing Pipeline 5ff83fdd03d26d31337cbf678ada2a0e https://www.encodeproject.org/files/ENCFF081AGJ/@@download/ENCFF081AGJ.bigBed hg19 archived mild to moderate bottlenecking ENCFF613EAJ bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF035PSF 11476266 ENCODE Processing Pipeline 47a2a90bdb4bf92c864ca40415bcf25b https://www.encodeproject.org/files/ENCFF613EAJ/@@download/ENCFF613EAJ.bigBed hg19 archived mild to moderate bottlenecking ENCFF897PRV bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF643CGH 5264035969 ENCODE Processing Pipeline b102133b59aff632bbce5cab84c31033 https://www.encodeproject.org/files/ENCFF897PRV/@@download/ENCFF897PRV.bam GRCh38 released mild to moderate bottlenecking ENCFF844CVM bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF643CGH 4171149707 ENCODE Processing Pipeline a7c8caa65cf8cf05b2fc4ae9e1a2ff14 https://www.encodeproject.org/files/ENCFF844CVM/@@download/ENCFF844CVM.bam GRCh38 released mild to moderate bottlenecking ENCFF345DIP bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF643CGH 5252810687 ENCODE Processing Pipeline a0bf1f4ff521534f105c6c4a931b4a33 https://www.encodeproject.org/files/ENCFF345DIP/@@download/ENCFF345DIP.bam GRCh38 released mild to moderate bottlenecking ENCFF541BNH bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF643CGH 4192789093 ENCODE Processing Pipeline 8970643dcd434d43e2649d36e616bd3d https://www.encodeproject.org/files/ENCFF541BNH/@@download/ENCFF541BNH.bam GRCh38 released mild to moderate bottlenecking ENCFF380FCK bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 1235727588 ENCODE Processing Pipeline 0f0638e0cc20bfc8cc1515c7e8ca3ccd https://www.encodeproject.org/files/ENCFF380FCK/@@download/ENCFF380FCK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF870HHX bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 934814741 ENCODE Processing Pipeline 86743d8af20f0f58b0f718001efbbc93 https://www.encodeproject.org/files/ENCFF870HHX/@@download/ENCFF870HHX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF191ZWL bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 2155078280 ENCODE Processing Pipeline 76a602a2fc11f5be324e35c8264183fe https://www.encodeproject.org/files/ENCFF191ZWL/@@download/ENCFF191ZWL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF508KEM bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 1201192503 ENCODE Processing Pipeline cbc896500a288702815cd32b25c6f2e3 https://www.encodeproject.org/files/ENCFF508KEM/@@download/ENCFF508KEM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF041EKZ bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 1113397942 ENCODE Processing Pipeline 81549885b5c338ef3b5adfad83c6f5c1 https://www.encodeproject.org/files/ENCFF041EKZ/@@download/ENCFF041EKZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF161JPA bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 2150987077 ENCODE Processing Pipeline 4ec5eb6c64c4747329019066e1a29487 https://www.encodeproject.org/files/ENCFF161JPA/@@download/ENCFF161JPA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF553OPN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF084JTT 11553284 ENCODE Processing Pipeline d9eb4f55338135d66b96230b117591ea https://www.encodeproject.org/files/ENCFF553OPN/@@download/ENCFF553OPN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF814CND bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF326HIY 11501856 ENCODE Processing Pipeline 40b0db947a1b252e3cf1d981c8a51b6a https://www.encodeproject.org/files/ENCFF814CND/@@download/ENCFF814CND.bigBed GRCh38 released mild to moderate bottlenecking ENCFF084JTT bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 5474972 ENCODE Processing Pipeline f72156943b6d12f01c597a8d5652f4fc https://www.encodeproject.org/files/ENCFF084JTT/@@download/ENCFF084JTT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF326HIY bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 6846402 ENCODE Processing Pipeline c0c031ca1535c71b9a65b1e0bd3b50f7 https://www.encodeproject.org/files/ENCFF326HIY/@@download/ENCFF326HIY.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF084MAA bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF101AVT 11479479 ENCODE Processing Pipeline b9fd701822c5c059e9bb49189bd1ea98 https://www.encodeproject.org/files/ENCFF084MAA/@@download/ENCFF084MAA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF101AVT bed narrowPeak peaks and background as input for IDR ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 5615827 ENCODE Processing Pipeline 9be52a754e145c169e3a856d72eb4292 https://www.encodeproject.org/files/ENCFF101AVT/@@download/ENCFF101AVT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604AZX bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF084JTT, ENCFF101AVT, ENCFF326HIY, ENCFF419RSJ 90581 ENCODE Processing Pipeline 85ec6288b02f08e80b393f6e3354c27a https://www.encodeproject.org/files/ENCFF604AZX/@@download/ENCFF604AZX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF065MLN bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF084JTT, ENCFF101AVT, ENCFF326HIY, ENCFF419RSJ 57042 ENCODE Processing Pipeline 4c50b0cb3795922c56c1640b7ea4053f https://www.encodeproject.org/files/ENCFF065MLN/@@download/ENCFF065MLN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF326LCX bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF065MLN 153140 ENCODE Processing Pipeline 718d65c6faa0a57ed59c6446eafae0de https://www.encodeproject.org/files/ENCFF326LCX/@@download/ENCFF326LCX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF722HCL bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF604AZX 199813 ENCODE Processing Pipeline 5bba9fc4456e3b6e47d7468c9cfc9489 https://www.encodeproject.org/files/ENCFF722HCL/@@download/ENCFF722HCL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF880CYV bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035PSF, ENCFF706IKA, ENCFF789FWH 48104 ENCODE Processing Pipeline d2668df4c030cb671b7fbeffd1b8a58f https://www.encodeproject.org/files/ENCFF880CYV/@@download/ENCFF880CYV.bed.gz hg19 archived mild to moderate bottlenecking ENCFF976ZVG bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035PSF, ENCFF706IKA, ENCFF789FWH 74711 ENCODE Processing Pipeline b9ca3746a271c526d07bb436aa4d07b7 https://www.encodeproject.org/files/ENCFF976ZVG/@@download/ENCFF976ZVG.bed.gz hg19 archived mild to moderate bottlenecking ENCFF543PJM bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF880CYV 114236 ENCODE Processing Pipeline 3a0a6ad239f7e7abeae243959d27aa90 https://www.encodeproject.org/files/ENCFF543PJM/@@download/ENCFF543PJM.bigBed hg19 archived mild to moderate bottlenecking ENCFF932VYU bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF976ZVG 176972 ENCODE Processing Pipeline 879ebf801994eae2a2663f0f20faf6df https://www.encodeproject.org/files/ENCFF932VYU/@@download/ENCFF932VYU.bigBed hg19 archived mild to moderate bottlenecking ENCFF000WFL bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFR 995044593 Peggy Farnham, USC b91dcf11ea16d71c0a80ee76010bd4ce https://www.encodeproject.org/files/ENCFF000WFL/@@download/ENCFF000WFL.bam hg19 archived low read depth, borderline replicate concordance insufficient read length ENCFF000WFM bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFZ 1254160660 Peggy Farnham, USC 3236ffaaff5e5c719444d8c107ca5c77 https://www.encodeproject.org/files/ENCFF000WFM/@@download/ENCFF000WFM.bam hg19 archived low read depth, borderline replicate concordance insufficient read length ENCFF000WFN bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFP 135795 Peggy Farnham, USC 05812990cc22b5a685709c6b5e2425f2 https://www.encodeproject.org/files/ENCFF000WFN/@@download/ENCFF000WFN.bigBed hg19 archived low read depth, borderline replicate concordance insufficient read length ENCFF000WFO bigWig signal ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 447946890 Peggy Farnham, USC 842bfaa487e655a831ce32dacd0a00e1 https://www.encodeproject.org/files/ENCFF000WFO/@@download/ENCFF000WFO.bigWig hg19 archived low read depth, borderline replicate concordance missing derived_from insufficient read length ENCFF000WFR fastq reads ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 754952111 Peggy Farnham, USC ef29b0894efe82f72d8707b5580c5ace https://www.encodeproject.org/files/ENCFF000WFR/@@download/ENCFF000WFR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read depth, borderline replicate concordance insufficient read length ENCFF000WFZ fastq reads ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 953215497 Peggy Farnham, USC d98f6eeee0f015b32273fc58128fef65 https://www.encodeproject.org/files/ENCFF000WFZ/@@download/ENCFF000WFZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read depth, borderline replicate concordance insufficient read length ENCFF001VFP bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 37677 Peggy Farnham, USC ce54a52e0a56b4f3a28f5745e69f9142 https://www.encodeproject.org/files/ENCFF001VFP/@@download/ENCFF001VFP.bed.gz hg19 archived low read depth, borderline replicate concordance missing derived_from insufficient read length ENCFF002CPS bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 34405 ENCODE Consortium Analysis Working Group be45adf93388769e6fecf0357e511b77 https://www.encodeproject.org/files/ENCFF002CPS/@@download/ENCFF002CPS.bed.gz hg19 archived low read depth, borderline replicate concordance missing derived_from insufficient read length ENCFF362AXW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPS 174981 ENCODE Consortium bcf995f4b77a253890d133f6817c2723 https://www.encodeproject.org/files/ENCFF362AXW/@@download/ENCFF362AXW.bigBed hg19 archived low read depth, borderline replicate concordance insufficient read length ENCFF199XSZ bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF643CGH 483143173 ENCODE Processing Pipeline 54a74f7d8a47a7edf8b7f78c64ecd1e1 https://www.encodeproject.org/files/ENCFF199XSZ/@@download/ENCFF199XSZ.bam GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF485BYB bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF643CGH 616534131 ENCODE Processing Pipeline ba6995285912c14b840233c95a6b2024 https://www.encodeproject.org/files/ENCFF485BYB/@@download/ENCFF485BYB.bam GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF971AIC bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF643CGH 937274124 ENCODE Processing Pipeline 2c925f5537d31e6d846c4558c56b1ca0 https://www.encodeproject.org/files/ENCFF971AIC/@@download/ENCFF971AIC.bam GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF987VYJ bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF643CGH 1179069074 ENCODE Processing Pipeline 02b2c969e452d178a16af5cdd1b1d8bd https://www.encodeproject.org/files/ENCFF987VYJ/@@download/ENCFF987VYJ.bam GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF123VIR bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF807MUK 934908288 ENCODE Processing Pipeline a9af0e267087ec9980cddf99ac39eac2 https://www.encodeproject.org/files/ENCFF123VIR/@@download/ENCFF123VIR.bam hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF817KGL bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF807MUK 1175412328 ENCODE Processing Pipeline 78297941dd1b05df2327530213f412e8 https://www.encodeproject.org/files/ENCFF817KGL/@@download/ENCFF817KGL.bam hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF289RZG bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF807MUK 483140887 ENCODE Processing Pipeline ff4513f2424297334965ebc18e248462 https://www.encodeproject.org/files/ENCFF289RZG/@@download/ENCFF289RZG.bam hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF236GMW bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF807MUK 616683061 ENCODE Processing Pipeline d5c79d04eace36d8c32c2673de0a8bbd https://www.encodeproject.org/files/ENCFF236GMW/@@download/ENCFF236GMW.bam hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF208TMB bed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF258YSG, ENCFF423FMQ, ENCFF973NBX 14288 ENCODE Processing Pipeline 449b514fad2d440af822c75c9f1db518 https://www.encodeproject.org/files/ENCFF208TMB/@@download/ENCFF208TMB.bed.gz hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF588OWL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF208TMB 66906 ENCODE Processing Pipeline 28339a6fb37ed3032345c94e44364607 https://www.encodeproject.org/files/ENCFF588OWL/@@download/ENCFF588OWL.bigBed hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF033SNP bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 218222749 ENCODE Processing Pipeline 5a0c15380b2e5bcaa961ee8d97203de0 https://www.encodeproject.org/files/ENCFF033SNP/@@download/ENCFF033SNP.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF861LRM bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 397709039 ENCODE Processing Pipeline 55a761e334ea45688de8c729bf86f800 https://www.encodeproject.org/files/ENCFF861LRM/@@download/ENCFF861LRM.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF423FMQ bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 4062549 ENCODE Processing Pipeline 0db29d195cd81743099c7368d530b510 https://www.encodeproject.org/files/ENCFF423FMQ/@@download/ENCFF423FMQ.bed.gz hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF721FTG bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF258YSG, ENCFF423FMQ, ENCFF973NBX 20872 ENCODE Processing Pipeline abe930e6ea87a09befc3de1e721f6948 https://www.encodeproject.org/files/ENCFF721FTG/@@download/ENCFF721FTG.bed.gz hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF127HCW bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 216583705 ENCODE Processing Pipeline b34497934d89b3bf5bac96be178afc40 https://www.encodeproject.org/files/ENCFF127HCW/@@download/ENCFF127HCW.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF857ALS bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 230884839 ENCODE Processing Pipeline b102e08a4da912c9128ed3195ed67ce3 https://www.encodeproject.org/files/ENCFF857ALS/@@download/ENCFF857ALS.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF368CFQ bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF423FMQ 10276977 ENCODE Processing Pipeline fe1814499405455e00a2e42faac5ff8a https://www.encodeproject.org/files/ENCFF368CFQ/@@download/ENCFF368CFQ.bigBed hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF105EIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF721FTG 76283 ENCODE Processing Pipeline c00b00f7578c91524083b67aeb2fa528 https://www.encodeproject.org/files/ENCFF105EIG/@@download/ENCFF105EIG.bigBed hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF932FUV bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 201107945 ENCODE Processing Pipeline 65f01854b5b901bb38d68e91979c6ae1 https://www.encodeproject.org/files/ENCFF932FUV/@@download/ENCFF932FUV.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF560NWR bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 213361775 ENCODE Processing Pipeline 5ae7d19d8fd9501bc063c56bd84ba2f0 https://www.encodeproject.org/files/ENCFF560NWR/@@download/ENCFF560NWR.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF150BGK bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 3997730 ENCODE Processing Pipeline fcbe4c6b4feaea25a15ea9f810748372 https://www.encodeproject.org/files/ENCFF150BGK/@@download/ENCFF150BGK.bed.gz GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF548GRF bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 4713705 ENCODE Processing Pipeline d56741da5522859cc6164abff9436fc1 https://www.encodeproject.org/files/ENCFF548GRF/@@download/ENCFF548GRF.bed.gz GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF141SUI bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 221300361 ENCODE Processing Pipeline c5193e147be2194662b4c428a6ae3789 https://www.encodeproject.org/files/ENCFF141SUI/@@download/ENCFF141SUI.bigWig hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF973NBX bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 3997830 ENCODE Processing Pipeline 03cc4cb6dd5e79225c390245c59eeb18 https://www.encodeproject.org/files/ENCFF973NBX/@@download/ENCFF973NBX.bed.gz hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF258YSG bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 4706612 ENCODE Processing Pipeline 1c34d9a2fd97f51b3d9f5a3763be979d https://www.encodeproject.org/files/ENCFF258YSG/@@download/ENCFF258YSG.bed.gz hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF821QXQ bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF973NBX 10377237 ENCODE Processing Pipeline 2a6aea8c92b43f7493696fdd5572b327 https://www.encodeproject.org/files/ENCFF821QXQ/@@download/ENCFF821QXQ.bigBed hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF363NXG bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF258YSG 11009198 ENCODE Processing Pipeline 07574c4dc5343d512a4130d41c0784e6 https://www.encodeproject.org/files/ENCFF363NXG/@@download/ENCFF363NXG.bigBed hg19 released low read depth, borderline replicate concordance insufficient read length ENCFF098SQG bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 221069756 ENCODE Processing Pipeline bf5e8da17f6fb68c7d8e24971001aaaa https://www.encodeproject.org/files/ENCFF098SQG/@@download/ENCFF098SQG.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF605NTP bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 217653160 ENCODE Processing Pipeline 5b6848fd9777869a9b0d5e124d3d6819 https://www.encodeproject.org/files/ENCFF605NTP/@@download/ENCFF605NTP.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF865NON bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF150BGK 10426342 ENCODE Processing Pipeline 76c44f56ee1064d4d9c84092e1de0c16 https://www.encodeproject.org/files/ENCFF865NON/@@download/ENCFF865NON.bigBed GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF546LNP bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548GRF 11013461 ENCODE Processing Pipeline da717795fa7e69b3621be0645d48a2ac https://www.encodeproject.org/files/ENCFF546LNP/@@download/ENCFF546LNP.bigBed GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF434HVY bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150BGK, ENCFF419RSJ, ENCFF548GRF, ENCFF589LYY 20256 ENCODE Processing Pipeline b777a21430fdf491cb5da540cc6afe62 https://www.encodeproject.org/files/ENCFF434HVY/@@download/ENCFF434HVY.bed.gz GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF816IBZ bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 225427756 ENCODE Processing Pipeline 736904b946b42d143849ceb4ea14d990 https://www.encodeproject.org/files/ENCFF816IBZ/@@download/ENCFF816IBZ.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF015IGW bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 230062905 ENCODE Processing Pipeline ea41741b45ad62c2f22774b62347f9b0 https://www.encodeproject.org/files/ENCFF015IGW/@@download/ENCFF015IGW.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF725QBH bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 397777347 ENCODE Processing Pipeline c3ddf1562482b42f071ed7270509e499 https://www.encodeproject.org/files/ENCFF725QBH/@@download/ENCFF725QBH.bigWig GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF170FYU bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF589LYY 10213516 ENCODE Processing Pipeline 7bd92178011ee1115935e01267e14205 https://www.encodeproject.org/files/ENCFF170FYU/@@download/ENCFF170FYU.bigBed GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF589LYY bed narrowPeak peaks and background as input for IDR ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 4002131 ENCODE Processing Pipeline 712b6055b8c1388a54dc6ebbc08064e2 https://www.encodeproject.org/files/ENCFF589LYY/@@download/ENCFF589LYY.bed.gz GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF261WWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF434HVY 75992 ENCODE Processing Pipeline 63fd616ad16548c0437b2ddc31053bfd https://www.encodeproject.org/files/ENCFF261WWV/@@download/ENCFF261WWV.bigBed GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF892GAT bed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150BGK, ENCFF419RSJ, ENCFF548GRF, ENCFF589LYY 14325 ENCODE Processing Pipeline bbc69d68325325f82e3ccbac810d00bc https://www.encodeproject.org/files/ENCFF892GAT/@@download/ENCFF892GAT.bed.gz GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF992PRK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF892GAT 67856 ENCODE Processing Pipeline 91c167f3d0338c91dbb3d2b2e615e630 https://www.encodeproject.org/files/ENCFF992PRK/@@download/ENCFF992PRK.bigBed GRCh38 released low read depth, borderline replicate concordance insufficient read length ENCFF000VUQ bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VVP 456470369 Michael Snyder, Stanford fa9c4893066d128ed24d5fc45becb67a https://www.encodeproject.org/files/ENCFF000VUQ/@@download/ENCFF000VUQ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VUR bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEF 4287815 Michael Snyder, Stanford 9ea716d6ee706518ae4bf35c691d5aae https://www.encodeproject.org/files/ENCFF000VUR/@@download/ENCFF000VUR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VUS bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VVQ 473944988 Michael Snyder, Stanford 91d0dd9e0df439dd6599914b5275e7b2 https://www.encodeproject.org/files/ENCFF000VUS/@@download/ENCFF000VUS.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VUT bigWig signal ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 362265179 Michael Snyder, Stanford 166e1963016de1c4ec430b2a2e270706 https://www.encodeproject.org/files/ENCFF000VUT/@@download/ENCFF000VUT.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VVP fastq reads ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1477117077 Michael Snyder, Stanford a6ff7c0c003cdfdc3341d1b3e4a22972 https://www.encodeproject.org/files/ENCFF000VVP/@@download/ENCFF000VVP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VVQ fastq reads ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 994552200 Michael Snyder, Stanford 5e7f2eec5d5115f361ed5ec6f1b22b68 https://www.encodeproject.org/files/ENCFF000VVQ/@@download/ENCFF000VVQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF001VEF bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1754078 Michael Snyder, Stanford 17446b393c16c1c904c2892dffa5086a https://www.encodeproject.org/files/ENCFF001VEF/@@download/ENCFF001VEF.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COS bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 787819 ENCODE Consortium Analysis Working Group 708f29d8a17c765e32e16b09c85c7017 https://www.encodeproject.org/files/ENCFF002COS/@@download/ENCFF002COS.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF795FDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COS 1680946 ENCODE Consortium b83f0a4c19ec9bd61321757f8aee7a16 https://www.encodeproject.org/files/ENCFF795FDZ/@@download/ENCFF795FDZ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF891JOR bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF643CGH 1552169472 ENCODE Processing Pipeline 80543928e4d531d41c56687db87e4884 https://www.encodeproject.org/files/ENCFF891JOR/@@download/ENCFF891JOR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF340SPK bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF643CGH 617910247 ENCODE Processing Pipeline 59a24cebb68d8f1f4a70ecf3af93815e https://www.encodeproject.org/files/ENCFF340SPK/@@download/ENCFF340SPK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF746KYL bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF643CGH 896835945 ENCODE Processing Pipeline 873f299ed6d40f2a415ceb625f57bbdf https://www.encodeproject.org/files/ENCFF746KYL/@@download/ENCFF746KYL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF891SOM bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF643CGH 1020644351 ENCODE Processing Pipeline 9a4842ea0ab6b490c960a92a241740a2 https://www.encodeproject.org/files/ENCFF891SOM/@@download/ENCFF891SOM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF522BBQ bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF807MUK 1545267446 ENCODE Processing Pipeline 15e331ce75798c85a641a1de4c9dc455 https://www.encodeproject.org/files/ENCFF522BBQ/@@download/ENCFF522BBQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF317XPZ bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF807MUK 1017728195 ENCODE Processing Pipeline cbd8102ee74f34205332cae9e433920b https://www.encodeproject.org/files/ENCFF317XPZ/@@download/ENCFF317XPZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF432WTX bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF807MUK 617859854 ENCODE Processing Pipeline 2c4883e93297daa02e341fcdd31ea417 https://www.encodeproject.org/files/ENCFF432WTX/@@download/ENCFF432WTX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF915EPF bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF807MUK 895957440 ENCODE Processing Pipeline 7a7b988f59542bd129c8b6f2b0d9508b https://www.encodeproject.org/files/ENCFF915EPF/@@download/ENCFF915EPF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF217LQZ bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 268184109 ENCODE Processing Pipeline 1395bf75aa4015cf2aac16ba06b9e412 https://www.encodeproject.org/files/ENCFF217LQZ/@@download/ENCFF217LQZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF247GGL bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 195102888 ENCODE Processing Pipeline 1a8b3792fdc64f28a37f8c4c0f73d007 https://www.encodeproject.org/files/ENCFF247GGL/@@download/ENCFF247GGL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF286BVW bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 211068500 ENCODE Processing Pipeline b8817e386e645d5c7347afed32cf18c0 https://www.encodeproject.org/files/ENCFF286BVW/@@download/ENCFF286BVW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF752LHH bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 359639676 ENCODE Processing Pipeline df1392acdba8b768d409afdac507b43a https://www.encodeproject.org/files/ENCFF752LHH/@@download/ENCFF752LHH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF499QLO bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 537915536 ENCODE Processing Pipeline 16aaf92f0a43eb904cc53358db746489 https://www.encodeproject.org/files/ENCFF499QLO/@@download/ENCFF499QLO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF387YIQ bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF248VST 10654885 ENCODE Processing Pipeline 8e5359e36a119e76e7c8dae1b6bda4aa https://www.encodeproject.org/files/ENCFF387YIQ/@@download/ENCFF387YIQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF248XJC bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 195323599 ENCODE Processing Pipeline a94946ae2c9e64c2fb8f83bbb99dabe3 https://www.encodeproject.org/files/ENCFF248XJC/@@download/ENCFF248XJC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF702YUA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF382VEJ 1158324 ENCODE Processing Pipeline a678a50caabd3e4730b27cbb40e7ba9a https://www.encodeproject.org/files/ENCFF702YUA/@@download/ENCFF702YUA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF583XLS bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 5378402 ENCODE Processing Pipeline 3ba7a14bbae178c463f5ccac34e83d08 https://www.encodeproject.org/files/ENCFF583XLS/@@download/ENCFF583XLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF578LBI bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF097DVZ 10416850 ENCODE Processing Pipeline 32fcd63bdf81c6b4e8bf814ced79b4ca https://www.encodeproject.org/files/ENCFF578LBI/@@download/ENCFF578LBI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF248VST bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 4743208 ENCODE Processing Pipeline 22f615319ddaccb9e66d6dc8fbccd389 https://www.encodeproject.org/files/ENCFF248VST/@@download/ENCFF248VST.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF382VEJ bed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF097DVZ, ENCFF248VST, ENCFF583XLS 580137 ENCODE Processing Pipeline aa232576bcd6911bf90c5ecad342a901 https://www.encodeproject.org/files/ENCFF382VEJ/@@download/ENCFF382VEJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF097DVZ bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 4691740 ENCODE Processing Pipeline 1deaf2fdf6bed5fd255130f05489b44f https://www.encodeproject.org/files/ENCFF097DVZ/@@download/ENCFF097DVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF331YMJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF868VSY 1303930 ENCODE Processing Pipeline d5e7b708d115aecc327756a4d0b4a67d https://www.encodeproject.org/files/ENCFF331YMJ/@@download/ENCFF331YMJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF214IRZ bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF583XLS 11169162 ENCODE Processing Pipeline 727ce8596682423f46838ef8ebedf665 https://www.encodeproject.org/files/ENCFF214IRZ/@@download/ENCFF214IRZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF868VSY bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF097DVZ, ENCFF248VST, ENCFF583XLS 673345 ENCODE Processing Pipeline f0b989cb4493c1a9afb342953149b247 https://www.encodeproject.org/files/ENCFF868VSY/@@download/ENCFF868VSY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF074YJO bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 195446904 ENCODE Processing Pipeline 182f2f3ad5c4b46bf5ac0dced8a257d0 https://www.encodeproject.org/files/ENCFF074YJO/@@download/ENCFF074YJO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF239CXL bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 351907159 ENCODE Processing Pipeline e7d955b69f3e5ac1976ec2c4be3afc60 https://www.encodeproject.org/files/ENCFF239CXL/@@download/ENCFF239CXL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF980RLN bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF914MKU 11172104 ENCODE Processing Pipeline b28a547fd7b4b25801c5039a917be731 https://www.encodeproject.org/files/ENCFF980RLN/@@download/ENCFF980RLN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF188AYL bed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF109XYU, ENCFF419RSJ, ENCFF898GZO, ENCFF914MKU 580678 ENCODE Processing Pipeline e2a750cdeaed950e8c95e8809a9d6ee2 https://www.encodeproject.org/files/ENCFF188AYL/@@download/ENCFF188AYL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF249SVT bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF109XYU, ENCFF419RSJ, ENCFF898GZO, ENCFF914MKU 678438 ENCODE Processing Pipeline eb58314880ba52501ea3cb644dd1dc9a https://www.encodeproject.org/files/ENCFF249SVT/@@download/ENCFF249SVT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF170NTY bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 537154554 ENCODE Processing Pipeline 610eb68f6161b847681ac51c44fd1214 https://www.encodeproject.org/files/ENCFF170NTY/@@download/ENCFF170NTY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF898GZO bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 4753127 ENCODE Processing Pipeline fbcfacc9a255c288e8c7e1eded938918 https://www.encodeproject.org/files/ENCFF898GZO/@@download/ENCFF898GZO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF911NBR bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF109XYU 10408046 ENCODE Processing Pipeline 193d5e27d4a0b369cdc71001d1cdbf8d https://www.encodeproject.org/files/ENCFF911NBR/@@download/ENCFF911NBR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF055OSI bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 195240875 ENCODE Processing Pipeline 8f5076f1248b733b4e385dedc44d4c2a https://www.encodeproject.org/files/ENCFF055OSI/@@download/ENCFF055OSI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF145WSG bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 265385436 ENCODE Processing Pipeline c8db11b0660f7ff5ded94b2e74a1ac07 https://www.encodeproject.org/files/ENCFF145WSG/@@download/ENCFF145WSG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF109XYU bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 4683435 ENCODE Processing Pipeline 25c9d7219a4c7782f592f911ad7bda50 https://www.encodeproject.org/files/ENCFF109XYU/@@download/ENCFF109XYU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF406QGQ bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 211165413 ENCODE Processing Pipeline f1dbc239b38b16ced77e73c55c79ee7c https://www.encodeproject.org/files/ENCFF406QGQ/@@download/ENCFF406QGQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF914MKU bed narrowPeak peaks and background as input for IDR ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 5381805 ENCODE Processing Pipeline 37e23fd17639ffc95a395116f3d4b398 https://www.encodeproject.org/files/ENCFF914MKU/@@download/ENCFF914MKU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF830UHF bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF898GZO 10657323 ENCODE Processing Pipeline 1ec64b8f5ccbff3129ae7fa944a20c3c https://www.encodeproject.org/files/ENCFF830UHF/@@download/ENCFF830UHF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF973MOA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF249SVT 1316039 ENCODE Processing Pipeline 1b45a4057c5860e828f1e09dc6a1a385 https://www.encodeproject.org/files/ENCFF973MOA/@@download/ENCFF973MOA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF282FSG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF188AYL 1162174 ENCODE Processing Pipeline 77bcf2ed223c96316eecd5f609ae4c4c https://www.encodeproject.org/files/ENCFF282FSG/@@download/ENCFF282FSG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF000NUE bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NUP 767215355 Richard Myers, HAIB de6102fdd7cea95ee3ffb167f20dd5f8 https://www.encodeproject.org/files/ENCFF000NUE/@@download/ENCFF000NUE.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUF bigWig raw signal ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 46782844 Richard Myers, HAIB 6800d6701c8a15837dad739afc46fb42 https://www.encodeproject.org/files/ENCFF000NUF/@@download/ENCFF000NUF.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NUG bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NUV 1467733019 Richard Myers, HAIB d1c4960436d792ffb13c0e3ea2512930 https://www.encodeproject.org/files/ENCFF000NUG/@@download/ENCFF000NUG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUH bigWig raw signal ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 37621433 Richard Myers, HAIB 8fb63e9748bdf41924a9b1c2c75dcbbc https://www.encodeproject.org/files/ENCFF000NUH/@@download/ENCFF000NUH.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NUI bigBed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWR 1240079 Richard Myers, HAIB 80cbf5826ae8fb03e210b4315746a0c2 https://www.encodeproject.org/files/ENCFF000NUI/@@download/ENCFF000NUI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUJ bigBed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWT 1398547 Richard Myers, HAIB 3367ddbe03b4a01aa3738973647c3917 https://www.encodeproject.org/files/ENCFF000NUJ/@@download/ENCFF000NUJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUP fastq reads ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 817324317 Richard Myers, HAIB 0d40a7dda221db39df5f700461adcce9 https://www.encodeproject.org/files/ENCFF000NUP/@@download/ENCFF000NUP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000NUV fastq reads ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1833866718 Richard Myers, HAIB f9af8da2f2d96881d40bf376af3a4132 https://www.encodeproject.org/files/ENCFF000NUV/@@download/ENCFF000NUV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWR bed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 639770 Richard Myers, HAIB ffc9f7f1d08a6b46b7ecf325d2dde29f https://www.encodeproject.org/files/ENCFF001TWR/@@download/ENCFF001TWR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWT bed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 795385 Richard Myers, HAIB d8f165e304d9b15630734e741144d970 https://www.encodeproject.org/files/ENCFF001TWT/@@download/ENCFF001TWT.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGV bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 709523 ENCODE Consortium Analysis Working Group 5f6fc43a9cd69bd28ade083a5de1345c https://www.encodeproject.org/files/ENCFF002CGV/@@download/ENCFF002CGV.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF752SDC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGV 1462375 ENCODE Consortium 95b641af2f21c1878502356767859911 https://www.encodeproject.org/files/ENCFF752SDC/@@download/ENCFF752SDC.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF164HPP bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF643CGH 1016464040 ENCODE Processing Pipeline dd202998ee9336b9c89232ddda1e4d94 https://www.encodeproject.org/files/ENCFF164HPP/@@download/ENCFF164HPP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF340QCB bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF643CGH 605403432 ENCODE Processing Pipeline a80036176a0198b54323b81a6b7a6291 https://www.encodeproject.org/files/ENCFF340QCB/@@download/ENCFF340QCB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF648JQE bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF643CGH 2219242915 ENCODE Processing Pipeline 2f714083c8999767f3ef03c3191a166c https://www.encodeproject.org/files/ENCFF648JQE/@@download/ENCFF648JQE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF426RGL bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF643CGH 1063401678 ENCODE Processing Pipeline 1347ae3db03cd269565f27aee07a837f https://www.encodeproject.org/files/ENCFF426RGL/@@download/ENCFF426RGL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF305MCD bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF807MUK 2212662930 ENCODE Processing Pipeline 39319642285caa5cbace946cb8e59900 https://www.encodeproject.org/files/ENCFF305MCD/@@download/ENCFF305MCD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF243EMB bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF807MUK 1015061524 ENCODE Processing Pipeline 9ceccf039c0714807577e427672f1968 https://www.encodeproject.org/files/ENCFF243EMB/@@download/ENCFF243EMB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF336DPP bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF807MUK 599972860 ENCODE Processing Pipeline de3fbd6fa17003548fd81a6525c7a16a https://www.encodeproject.org/files/ENCFF336DPP/@@download/ENCFF336DPP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF069CYJ bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF807MUK 1059531670 ENCODE Processing Pipeline fb9bf7af59c63d3cf24e264b3a7fad64 https://www.encodeproject.org/files/ENCFF069CYJ/@@download/ENCFF069CYJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF113ZCS bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 452817550 ENCODE Processing Pipeline b84ae1a1a56a6b67b30a647e9bc43d81 https://www.encodeproject.org/files/ENCFF113ZCS/@@download/ENCFF113ZCS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF980LUU bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 452768594 ENCODE Processing Pipeline 7b21b5743b1bfdbc6ac52df270203f11 https://www.encodeproject.org/files/ENCFF980LUU/@@download/ENCFF980LUU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF243MXE bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 798868594 ENCODE Processing Pipeline 690690656ac8cf3df50ccbf014310519 https://www.encodeproject.org/files/ENCFF243MXE/@@download/ENCFF243MXE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF244IRL bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 425055723 ENCODE Processing Pipeline e7fed54902e4f20b1e3e1c4d79621672 https://www.encodeproject.org/files/ENCFF244IRL/@@download/ENCFF244IRL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF876OVA bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF537FLG 11368561 ENCODE Processing Pipeline 33b4f027bd22edb61fca51c6490e592c https://www.encodeproject.org/files/ENCFF876OVA/@@download/ENCFF876OVA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF303NPO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF210IRE 917961 ENCODE Processing Pipeline 615d514fda8e07174b310bbccbe7da2f https://www.encodeproject.org/files/ENCFF303NPO/@@download/ENCFF303NPO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF004UMO bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 4875831 ENCODE Processing Pipeline 37fdfc466c60bbb1e60f823b42950b51 https://www.encodeproject.org/files/ENCFF004UMO/@@download/ENCFF004UMO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF809GCI bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 256386794 ENCODE Processing Pipeline 62270604a990c8c0ec76188c4baf01ed https://www.encodeproject.org/files/ENCFF809GCI/@@download/ENCFF809GCI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF007KQM bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 4978842 ENCODE Processing Pipeline ec6d3385fe3bdce11b017a3b7daca7e9 https://www.encodeproject.org/files/ENCFF007KQM/@@download/ENCFF007KQM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF731FFI bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF007KQM 11178446 ENCODE Processing Pipeline b1b47a1988ca490c387b960116ceb3f0 https://www.encodeproject.org/files/ENCFF731FFI/@@download/ENCFF731FFI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF107LDM bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 743337356 ENCODE Processing Pipeline b1e91d3ce500741ca50b16f8d61462ba https://www.encodeproject.org/files/ENCFF107LDM/@@download/ENCFF107LDM.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF537FLG bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 5831805 ENCODE Processing Pipeline da98fc462cc97cb34cdeeab01d24d221 https://www.encodeproject.org/files/ENCFF537FLG/@@download/ENCFF537FLG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF874WCG bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004UMO 10459895 ENCODE Processing Pipeline 1a75cfbc3db6819d28ebef0a3741762e https://www.encodeproject.org/files/ENCFF874WCG/@@download/ENCFF874WCG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF210IRE bed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004UMO, ENCFF007KQM, ENCFF419RSJ, ENCFF537FLG 523118 ENCODE Processing Pipeline 3e995ce721c960159c52b7b6ac6311e6 https://www.encodeproject.org/files/ENCFF210IRE/@@download/ENCFF210IRE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF358VLN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF864NSW 1396053 ENCODE Processing Pipeline 63f9d741098980e49b1ed76759bdbb08 https://www.encodeproject.org/files/ENCFF358VLN/@@download/ENCFF358VLN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF864NSW bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004UMO, ENCFF007KQM, ENCFF419RSJ, ENCFF537FLG 680984 ENCODE Processing Pipeline 5b9d91a0c2616a19e725712cbf3da5b3 https://www.encodeproject.org/files/ENCFF864NSW/@@download/ENCFF864NSW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF617OMU bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 580914430 ENCODE Processing Pipeline a2ff5307f482e4b4376ac944e1cfe0af https://www.encodeproject.org/files/ENCFF617OMU/@@download/ENCFF617OMU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF297DXO bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 840400196 ENCODE Processing Pipeline 7bbb8b12faa8f63e6623329491344908 https://www.encodeproject.org/files/ENCFF297DXO/@@download/ENCFF297DXO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF015HUU bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 419359493 ENCODE Processing Pipeline 259c90b9d387dce6ec031d20c1d0c5bd https://www.encodeproject.org/files/ENCFF015HUU/@@download/ENCFF015HUU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF598ZQZ bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 426928771 ENCODE Processing Pipeline 34a8b38f4151c45c5ee39ee8ed55cde9 https://www.encodeproject.org/files/ENCFF598ZQZ/@@download/ENCFF598ZQZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF867PUJ bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 253263158 ENCODE Processing Pipeline a5c2bc075b0b9392918b5de46222a2c3 https://www.encodeproject.org/files/ENCFF867PUJ/@@download/ENCFF867PUJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF541IHJ bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 5864276 ENCODE Processing Pipeline 5f62787550a4cb664c2557fd2c74ea74 https://www.encodeproject.org/files/ENCFF541IHJ/@@download/ENCFF541IHJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF362LNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF394DLH 1408629 ENCODE Processing Pipeline d59697824cfc13ca8e986c1f81ea117a https://www.encodeproject.org/files/ENCFF362LNI/@@download/ENCFF362LNI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF381QKO bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 749663617 ENCODE Processing Pipeline f7c22dc5fd84bc486d28a637ed283945 https://www.encodeproject.org/files/ENCFF381QKO/@@download/ENCFF381QKO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF113PGY bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 4772938 ENCODE Processing Pipeline 23ac45a229bdbfcc354141bafd672330 https://www.encodeproject.org/files/ENCFF113PGY/@@download/ENCFF113PGY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF839DFW bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF113PGY 10319384 ENCODE Processing Pipeline 5d4c8dfcb18b3ac8b6ef1686eef36ddc https://www.encodeproject.org/files/ENCFF839DFW/@@download/ENCFF839DFW.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF259ITT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF736ACY 920948 ENCODE Processing Pipeline fd88e004e31b15b5614fabbecbc33152 https://www.encodeproject.org/files/ENCFF259ITT/@@download/ENCFF259ITT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF394DLH bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF113PGY, ENCFF541IHJ, ENCFF920WQE 687507 ENCODE Processing Pipeline 665d97b52ab2270bef1179c705616a9b https://www.encodeproject.org/files/ENCFF394DLH/@@download/ENCFF394DLH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF073XWD bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF920WQE 11121711 ENCODE Processing Pipeline 70a8a21e92947d8561aebe92c62e9f35 https://www.encodeproject.org/files/ENCFF073XWD/@@download/ENCFF073XWD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF920WQE bed narrowPeak peaks and background as input for IDR ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 4923420 ENCODE Processing Pipeline bdc4d79c3e5fa3cc217fe423ad027dd9 https://www.encodeproject.org/files/ENCFF920WQE/@@download/ENCFF920WQE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF373LCM bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF541IHJ 13591070 ENCODE Processing Pipeline b745b756b075a7e430760b80c67720db https://www.encodeproject.org/files/ENCFF373LCM/@@download/ENCFF373LCM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF736ACY bed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF113PGY, ENCFF541IHJ, ENCFF920WQE 525301 ENCODE Processing Pipeline ef9afa74aef1504f73fcfbacb65d45aa https://www.encodeproject.org/files/ENCFF736ACY/@@download/ENCFF736ACY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NXU bigBed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXQ 1167589 Richard Myers, HAIB 8c504fde2a46648368334f8ec1a18206 https://www.encodeproject.org/files/ENCFF000NXU/@@download/ENCFF000NXU.bigBed hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NXV bigBed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXR 514330 Richard Myers, HAIB e383556a449513de50ca719bbc4f0dac https://www.encodeproject.org/files/ENCFF000NXV/@@download/ENCFF000NXV.bigBed hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NXX bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYH 1344274115 Richard Myers, HAIB b93c5562a0003c243b12f24931f39a0c https://www.encodeproject.org/files/ENCFF000NXX/@@download/ENCFF000NXX.bam hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NXY bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NYJ 1109705455 Richard Myers, HAIB c1a6a32546e91353bb6a9e8a87fe8c22 https://www.encodeproject.org/files/ENCFF000NXY/@@download/ENCFF000NXY.bam hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NXZ bigWig raw signal ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 49013415 Richard Myers, HAIB 97226b08836caad5ca589fc01ec1b4e9 https://www.encodeproject.org/files/ENCFF000NXZ/@@download/ENCFF000NXZ.bigWig hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NYA bigWig raw signal ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 22959401 Richard Myers, HAIB 4cd1c52da61578475888667af6bdaf05 https://www.encodeproject.org/files/ENCFF000NYA/@@download/ENCFF000NYA.bigWig hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NYH fastq reads ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1355323085 Richard Myers, HAIB 171808fc7101394bf88c7bcdab75afe2 https://www.encodeproject.org/files/ENCFF000NYH/@@download/ENCFF000NYH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NYJ fastq reads ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1114007550 Richard Myers, HAIB f202c66e4d37eb4d127adfb0e9a5b122 https://www.encodeproject.org/files/ENCFF000NYJ/@@download/ENCFF000NYJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001TXQ bed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 712158 Richard Myers, HAIB b78104558c7fba920533144a3277e9f7 https://www.encodeproject.org/files/ENCFF001TXQ/@@download/ENCFF001TXQ.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TXR bed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 323300 Richard Myers, HAIB 9cb04a083f8ab6c7715d3ad5081eb1a0 https://www.encodeproject.org/files/ENCFF001TXR/@@download/ENCFF001TXR.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHG bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 608424 ENCODE Consortium Analysis Working Group b8df4bad5bad9f8745dfe10c49735213 https://www.encodeproject.org/files/ENCFF002CHG/@@download/ENCFF002CHG.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF987FTR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHG 1405898 ENCODE Consortium c041bf48c0fac52e24f8bc05a0c17765 https://www.encodeproject.org/files/ENCFF987FTR/@@download/ENCFF987FTR.bigBed hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF512SGQ bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF643CGH 1179740104 ENCODE Processing Pipeline 278a980d8c2e88c0bb188d27d4ff8b71 https://www.encodeproject.org/files/ENCFF512SGQ/@@download/ENCFF512SGQ.bam GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF261PTK bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF643CGH 675205759 ENCODE Processing Pipeline 7e569bbf7a4cd3fd41c5667dabe68a4f https://www.encodeproject.org/files/ENCFF261PTK/@@download/ENCFF261PTK.bam GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF377QYQ bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF643CGH 1452858802 ENCODE Processing Pipeline 6ddc6a05369289bc68bf031d15098c2f https://www.encodeproject.org/files/ENCFF377QYQ/@@download/ENCFF377QYQ.bam GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF838XZA bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF643CGH 808765999 ENCODE Processing Pipeline 28ef492d202566e22ae62ed0fa6c40b9 https://www.encodeproject.org/files/ENCFF838XZA/@@download/ENCFF838XZA.bam GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF219MMF bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF807MUK 1178403357 ENCODE Processing Pipeline c14031e60e131ecf07b24f89c51ac462 https://www.encodeproject.org/files/ENCFF219MMF/@@download/ENCFF219MMF.bam hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF617HLC bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF807MUK 669300965 ENCODE Processing Pipeline c142a6b687b30b71c766bef10c1a6c71 https://www.encodeproject.org/files/ENCFF617HLC/@@download/ENCFF617HLC.bam hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF041PWP bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF807MUK 1450675432 ENCODE Processing Pipeline caa573f2bd0f82dff5bfc4c3a661f0f9 https://www.encodeproject.org/files/ENCFF041PWP/@@download/ENCFF041PWP.bam hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF930KIJ bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF807MUK 802797569 ENCODE Processing Pipeline d8ee1d883fa258a566b0e474ef40b1a3 https://www.encodeproject.org/files/ENCFF930KIJ/@@download/ENCFF930KIJ.bam hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF363OIP bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 576939838 ENCODE Processing Pipeline db24978c673c54b8135dfcd386915f63 https://www.encodeproject.org/files/ENCFF363OIP/@@download/ENCFF363OIP.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF572LIQ bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 459992186 ENCODE Processing Pipeline 8b0e934117e81748bc884ed66155cc79 https://www.encodeproject.org/files/ENCFF572LIQ/@@download/ENCFF572LIQ.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF985ZWZ bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF790YIS 12930877 ENCODE Processing Pipeline d13ca1bbe74bdebf6eee07486cc564fa https://www.encodeproject.org/files/ENCFF985ZWZ/@@download/ENCFF985ZWZ.bigBed GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF184AGP bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 828934832 ENCODE Processing Pipeline 7d4384ce9dec77750f5a63f79daae2ab https://www.encodeproject.org/files/ENCFF184AGP/@@download/ENCFF184AGP.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF196QMQ bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 6831187 ENCODE Processing Pipeline f60d9827a245929fac12837869cd7726 https://www.encodeproject.org/files/ENCFF196QMQ/@@download/ENCFF196QMQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF830EBQ bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 6981320 ENCODE Processing Pipeline 2325199fad8acb7dc70471c5d62521ba https://www.encodeproject.org/files/ENCFF830EBQ/@@download/ENCFF830EBQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF646JVP bed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF196QMQ, ENCFF419RSJ, ENCFF790YIS, ENCFF830EBQ 552690 ENCODE Processing Pipeline f325e7b649e35e6758d56fc0217ded02 https://www.encodeproject.org/files/ENCFF646JVP/@@download/ENCFF646JVP.bed.gz GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF376ITC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF646JVP 1229162 ENCODE Processing Pipeline 94949cafb55e9daf5f76c726dead63d1 https://www.encodeproject.org/files/ENCFF376ITC/@@download/ENCFF376ITC.bigBed GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF191FOS bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 441901058 ENCODE Processing Pipeline 4c4634d3abbe0f7966bcada754b11f7c https://www.encodeproject.org/files/ENCFF191FOS/@@download/ENCFF191FOS.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF388KAP bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 721754804 ENCODE Processing Pipeline dc70e14f076ba0b5a2358cecbdb8acbf https://www.encodeproject.org/files/ENCFF388KAP/@@download/ENCFF388KAP.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF974GZJ bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 504167814 ENCODE Processing Pipeline 5179d344998b9ce34ca2b879583dd2d0 https://www.encodeproject.org/files/ENCFF974GZJ/@@download/ENCFF974GZJ.bigWig GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF941CTI bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF196QMQ 12688845 ENCODE Processing Pipeline fe08b25892f767b1d2daf84d60bbd8e2 https://www.encodeproject.org/files/ENCFF941CTI/@@download/ENCFF941CTI.bigBed GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF819MMG bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF830EBQ 12657780 ENCODE Processing Pipeline b57d3cd098fc68775412a2351bff0d4c https://www.encodeproject.org/files/ENCFF819MMG/@@download/ENCFF819MMG.bigBed GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF480WDX bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF196QMQ, ENCFF419RSJ, ENCFF790YIS, ENCFF830EBQ 669412 ENCODE Processing Pipeline becbcfef50d627dc9fb4a9bbf5c8a890 https://www.encodeproject.org/files/ENCFF480WDX/@@download/ENCFF480WDX.bed.gz GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF074ZXN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF480WDX 1436563 ENCODE Processing Pipeline b7351f41395c50c3b832cd8335113565 https://www.encodeproject.org/files/ENCFF074ZXN/@@download/ENCFF074ZXN.bigBed GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF790YIS bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 6363409 ENCODE Processing Pipeline 27cf39f20b496402c93629cb0ed10c42 https://www.encodeproject.org/files/ENCFF790YIS/@@download/ENCFF790YIS.bed.gz GRCh38 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF559GVL bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 448013018 ENCODE Processing Pipeline d4d35a3455a086d6cc4e9828acd0d03b https://www.encodeproject.org/files/ENCFF559GVL/@@download/ENCFF559GVL.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF676IPZ bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 612392548 ENCODE Processing Pipeline 8f87e05574f77a855dbbade9a8605810 https://www.encodeproject.org/files/ENCFF676IPZ/@@download/ENCFF676IPZ.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF669FMA bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 574008239 ENCODE Processing Pipeline c427cbac3d7b7d99959be5882150dad1 https://www.encodeproject.org/files/ENCFF669FMA/@@download/ENCFF669FMA.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF197OZH bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 752732983 ENCODE Processing Pipeline 86e006177477509ecdfc9194663c0752 https://www.encodeproject.org/files/ENCFF197OZH/@@download/ENCFF197OZH.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF574ATX bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 453802498 ENCODE Processing Pipeline a443c6dcceab594abf40ae288abe5e19 https://www.encodeproject.org/files/ENCFF574ATX/@@download/ENCFF574ATX.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF996TKN bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 720805882 ENCODE Processing Pipeline 24e31600c2d1ec12ab09f6022c2fbcd3 https://www.encodeproject.org/files/ENCFF996TKN/@@download/ENCFF996TKN.bigWig hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF729EFK bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 6856843 ENCODE Processing Pipeline 5a08f73adafc396d36ff42aa76addf1b https://www.encodeproject.org/files/ENCFF729EFK/@@download/ENCFF729EFK.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF806NEN bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 6261010 ENCODE Processing Pipeline b12b3a898aaae73f6bae267d89c05c62 https://www.encodeproject.org/files/ENCFF806NEN/@@download/ENCFF806NEN.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF019FNI bed narrowPeak peaks and background as input for IDR ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 6488664 ENCODE Processing Pipeline f4ce1c0a9218c31ee5091bc8bf3803fc https://www.encodeproject.org/files/ENCFF019FNI/@@download/ENCFF019FNI.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF087BVG bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF729EFK 12565587 ENCODE Processing Pipeline 4709571d8ed1113d56dea248b669eca3 https://www.encodeproject.org/files/ENCFF087BVG/@@download/ENCFF087BVG.bigBed hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF598MIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF269LZJ 1012457 ENCODE Processing Pipeline 7b1de4935c051b1bbd2bd01ecd55a50d https://www.encodeproject.org/files/ENCFF598MIG/@@download/ENCFF598MIG.bigBed hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF628QJU bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019FNI, ENCFF729EFK, ENCFF806NEN 640810 ENCODE Processing Pipeline dc9ce027a41e9f4547f9aa222c71c62c https://www.encodeproject.org/files/ENCFF628QJU/@@download/ENCFF628QJU.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF027YFF bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF019FNI 12282263 ENCODE Processing Pipeline 1dc1f26e5fbc8d2c6442a5cb1da4e15a https://www.encodeproject.org/files/ENCFF027YFF/@@download/ENCFF027YFF.bigBed hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF787RNR bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF806NEN 12901994 ENCODE Processing Pipeline e891b219ed4c73b0826c9f3ce42e6722 https://www.encodeproject.org/files/ENCFF787RNR/@@download/ENCFF787RNR.bigBed hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF269LZJ bed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019FNI, ENCFF729EFK, ENCFF806NEN 534232 ENCODE Processing Pipeline 03f7a9c0cdd336f6c026fe75009d6e61 https://www.encodeproject.org/files/ENCFF269LZJ/@@download/ENCFF269LZJ.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF270NLN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF628QJU 1161707 ENCODE Processing Pipeline a280712855ecd441c5a0545fe0c8d592 https://www.encodeproject.org/files/ENCFF270NLN/@@download/ENCFF270NLN.bigBed hg19 released mild to moderate bottlenecking, low read length, moderate library complexity, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF425VPI bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF807MUK 4573220964 ENCODE Processing Pipeline f6c3ab57ccf764e41f7f3912940ec989 https://www.encodeproject.org/files/ENCFF425VPI/@@download/ENCFF425VPI.bam hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF218VQM bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF807MUK 4292875551 ENCODE Processing Pipeline 89d3b755b8a69fb3ffd338976c1a502d https://www.encodeproject.org/files/ENCFF218VQM/@@download/ENCFF218VQM.bam hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF654ZNL bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1592456332 ENCODE Processing Pipeline f1b7b794f207e4cf5d2905825d609324 https://www.encodeproject.org/files/ENCFF654ZNL/@@download/ENCFF654ZNL.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF002EJZ fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKA 2245813254 Michael Snyder, Stanford 5f79e3eb85359fcdc814870275211eb1 SRA:SRR5111859 https://www.encodeproject.org/files/ENCFF002EJZ/@@download/ENCFF002EJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF002EKA fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJZ 2238446186 Michael Snyder, Stanford 1c169d29917a14cc7018cc36629623fd SRA:SRR5111859 https://www.encodeproject.org/files/ENCFF002EKA/@@download/ENCFF002EKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF002EKB fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKC 2099836661 Michael Snyder, Stanford 5d2e6f0b8f1713391fb62f644625058d SRA:SRR5111860 https://www.encodeproject.org/files/ENCFF002EKB/@@download/ENCFF002EKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF002EKC fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKB 2098946509 Michael Snyder, Stanford ce5468ac8c61efc4d2ab4cf5ec6efb2b SRA:SRR5111860 https://www.encodeproject.org/files/ENCFF002EKC/@@download/ENCFF002EKC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF959JZX bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5603245 ENCODE Processing Pipeline 19e02c2d6f1085dfc408eb2710934272 https://www.encodeproject.org/files/ENCFF959JZX/@@download/ENCFF959JZX.bed.gz hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF831JVY bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 6728841 ENCODE Processing Pipeline eee11253ed75ddc4964bd591c3a4e98a https://www.encodeproject.org/files/ENCFF831JVY/@@download/ENCFF831JVY.bed.gz hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF422WMJ bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1838524283 ENCODE Processing Pipeline 69852cdb09b498ec87f4cbd998424d1d https://www.encodeproject.org/files/ENCFF422WMJ/@@download/ENCFF422WMJ.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF862QRJ bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5524368 ENCODE Processing Pipeline 7782263881bcd6ed3afcd8274cfde3ef https://www.encodeproject.org/files/ENCFF862QRJ/@@download/ENCFF862QRJ.bed.gz hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF616LHO bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF862QRJ 11232916 ENCODE Processing Pipeline 0b03421aad909c80cc8bfc0b7b5d7f4e https://www.encodeproject.org/files/ENCFF616LHO/@@download/ENCFF616LHO.bigBed hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF917DPO bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF959JZX 11200613 ENCODE Processing Pipeline 71151f8471b9d71b49caaf6df53be04a https://www.encodeproject.org/files/ENCFF917DPO/@@download/ENCFF917DPO.bigBed hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF160UHF bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF831JVY 11140788 ENCODE Processing Pipeline d631ab949c01e9f1715069f3cd4961ac https://www.encodeproject.org/files/ENCFF160UHF/@@download/ENCFF160UHF.bigBed hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF356UKE bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF831JVY, ENCFF862QRJ, ENCFF959JZX 51429 ENCODE Processing Pipeline 59d500e6b074299d2b6f2028733b9279 https://www.encodeproject.org/files/ENCFF356UKE/@@download/ENCFF356UKE.bed.gz hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF516AJC bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF831JVY, ENCFF862QRJ, ENCFF959JZX 74606 ENCODE Processing Pipeline 316374d55e9babf8e309648be088e6f9 https://www.encodeproject.org/files/ENCFF516AJC/@@download/ENCFF516AJC.bed.gz hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF403EMJ bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF356UKE 152706 ENCODE Processing Pipeline 1cddd9277aefa0ee60e2f6227e3bd5af https://www.encodeproject.org/files/ENCFF403EMJ/@@download/ENCFF403EMJ.bigBed hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF381TID bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF516AJC 194711 ENCODE Processing Pipeline 9f58931faacf3653629d276266cc10a9 https://www.encodeproject.org/files/ENCFF381TID/@@download/ENCFF381TID.bigBed hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF481EUA bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF807MUK 2903232470 ENCODE Processing Pipeline bcbde95328c05d71ce914c8ca4dbbbf0 https://www.encodeproject.org/files/ENCFF481EUA/@@download/ENCFF481EUA.bam hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF102NUJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF807MUK 2685016742 ENCODE Processing Pipeline 2c8a8bff35f4f446ac686ed1cd6edd83 https://www.encodeproject.org/files/ENCFF102NUJ/@@download/ENCFF102NUJ.bam hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF927YIG bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 1050979264 ENCODE Processing Pipeline 5d86956107fa856538fd936dc2d9c015 https://www.encodeproject.org/files/ENCFF927YIG/@@download/ENCFF927YIG.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF602HXV bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 922420283 ENCODE Processing Pipeline df43c2725a5dc0e129deb07ba38fe8b1 https://www.encodeproject.org/files/ENCFF602HXV/@@download/ENCFF602HXV.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF336ZDO bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1604499321 ENCODE Processing Pipeline 6166d3f4ca05bb58cc5de869067332e5 https://www.encodeproject.org/files/ENCFF336ZDO/@@download/ENCFF336ZDO.bigWig hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF134JDG bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 943518012 ENCODE Processing Pipeline a76d85fc4aa967f41972843272aad431 https://www.encodeproject.org/files/ENCFF134JDG/@@download/ENCFF134JDG.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF223SSQ bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5745543 ENCODE Processing Pipeline 5f02c18d1026eea8f39907bf8d697ec9 https://www.encodeproject.org/files/ENCFF223SSQ/@@download/ENCFF223SSQ.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF619OWB bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5786788 ENCODE Processing Pipeline aa8a31c877313a6f0bdb97e87a00a5f8 https://www.encodeproject.org/files/ENCFF619OWB/@@download/ENCFF619OWB.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF239BVP bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 933879866 ENCODE Processing Pipeline 2a05a4f65e68d671952de2402c0d6753 https://www.encodeproject.org/files/ENCFF239BVP/@@download/ENCFF239BVP.bigWig hg19 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF780DCP bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF619OWB 11244729 ENCODE Processing Pipeline 79f4433647f9907b061e4f54323de095 https://www.encodeproject.org/files/ENCFF780DCP/@@download/ENCFF780DCP.bigBed hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF081JNI bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF229JRX 11143036 ENCODE Processing Pipeline 57cb4b5401a04833572ecb9a960d0be6 https://www.encodeproject.org/files/ENCFF081JNI/@@download/ENCFF081JNI.bigBed hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF377GCQ bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1852683009 ENCODE Processing Pipeline 1c7fbdf06c39ed00adeca546be80f63f https://www.encodeproject.org/files/ENCFF377GCQ/@@download/ENCFF377GCQ.bigWig hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF781OEM bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF223SSQ 11264859 ENCODE Processing Pipeline 331e394e42baa6fbb21cbdf05d03acf8 https://www.encodeproject.org/files/ENCFF781OEM/@@download/ENCFF781OEM.bigBed hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF229JRX bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 6854647 ENCODE Processing Pipeline 3d692715716b4b656c51b22e0c5c4a88 https://www.encodeproject.org/files/ENCFF229JRX/@@download/ENCFF229JRX.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF865MRA bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF643CGH 4294624242 ENCODE Processing Pipeline ac1493c552e53e3ac392db61a05ab095 https://www.encodeproject.org/files/ENCFF865MRA/@@download/ENCFF865MRA.bam GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF642CBH bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF643CGH 4575556310 ENCODE Processing Pipeline 9a0c57e8d30a60cfb0be9ca3fda85b5a https://www.encodeproject.org/files/ENCFF642CBH/@@download/ENCFF642CBH.bam GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF235FDS bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF643CGH 2689562996 ENCODE Processing Pipeline 6209e97f13ec8e6e1ed96567890030b4 https://www.encodeproject.org/files/ENCFF235FDS/@@download/ENCFF235FDS.bam GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF714EVJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF643CGH 2906408455 ENCODE Processing Pipeline 50e031970fd49dfbb9c302f3b7414343 https://www.encodeproject.org/files/ENCFF714EVJ/@@download/ENCFF714EVJ.bam GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF427FJT bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 935399658 ENCODE Processing Pipeline 04b2ecf46f03718c9e793ce213e305d2 https://www.encodeproject.org/files/ENCFF427FJT/@@download/ENCFF427FJT.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF196WZJ bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 971200451 ENCODE Processing Pipeline 952042a7e4d79132e48e3e18a99111f4 https://www.encodeproject.org/files/ENCFF196WZJ/@@download/ENCFF196WZJ.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF058VWP bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 1730983861 ENCODE Processing Pipeline 97f79e6c29e62df33cbe60312d73290c https://www.encodeproject.org/files/ENCFF058VWP/@@download/ENCFF058VWP.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF746UHI bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 945188847 ENCODE Processing Pipeline b3b63b44088c5bcdac8511aad66057aa https://www.encodeproject.org/files/ENCFF746UHI/@@download/ENCFF746UHI.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF662QXE bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 897706514 ENCODE Processing Pipeline 64224813cbde8912cdb42c2a8efeac53 https://www.encodeproject.org/files/ENCFF662QXE/@@download/ENCFF662QXE.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF328AZH bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 1848762651 ENCODE Processing Pipeline 0f9069a5a3227740784f3b8fcff7ef8b https://www.encodeproject.org/files/ENCFF328AZH/@@download/ENCFF328AZH.bigWig GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF488UQC bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 5523749 ENCODE Processing Pipeline 35253498e11627c527670fcc05329fae https://www.encodeproject.org/files/ENCFF488UQC/@@download/ENCFF488UQC.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF717JID bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 6733059 ENCODE Processing Pipeline 452899571e36c399ef80baff1abc18e9 https://www.encodeproject.org/files/ENCFF717JID/@@download/ENCFF717JID.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF275VNI bed narrowPeak peaks and background as input for IDR ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 5590651 ENCODE Processing Pipeline 08dd7cb7ab067202325e3a3c9266691e https://www.encodeproject.org/files/ENCFF275VNI/@@download/ENCFF275VNI.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF207IAM bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF488UQC 11254112 ENCODE Processing Pipeline 411c911fe6ce83e28a24c4598e7af99d https://www.encodeproject.org/files/ENCFF207IAM/@@download/ENCFF207IAM.bigBed GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF570EKG bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF275VNI 11229234 ENCODE Processing Pipeline f744e566fdddb30141259d95512375cc https://www.encodeproject.org/files/ENCFF570EKG/@@download/ENCFF570EKG.bigBed GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF897TSJ bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF717JID 11165783 ENCODE Processing Pipeline b3f9869af6e4bf486894740e6a616df1 https://www.encodeproject.org/files/ENCFF897TSJ/@@download/ENCFF897TSJ.bigBed GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF979BQI bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF275VNI, ENCFF419RSJ, ENCFF488UQC, ENCFF717JID 54842 ENCODE Processing Pipeline 06a86a732bcf3992073f8e38d0446792 https://www.encodeproject.org/files/ENCFF979BQI/@@download/ENCFF979BQI.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF110IKS bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF979BQI 157966 ENCODE Processing Pipeline 8a08b4ce4721c4b52da97734b4e0b3d5 https://www.encodeproject.org/files/ENCFF110IKS/@@download/ENCFF110IKS.bigBed GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF116AMK bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF275VNI, ENCFF419RSJ, ENCFF488UQC, ENCFF717JID 70930 ENCODE Processing Pipeline d2f7dc485fe7bf6d71fb2e92411b47d5 https://www.encodeproject.org/files/ENCFF116AMK/@@download/ENCFF116AMK.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF170DHA bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF116AMK 185570 ENCODE Processing Pipeline 9bcf9685c50d89a9306023aafd784cb5 https://www.encodeproject.org/files/ENCFF170DHA/@@download/ENCFF170DHA.bigBed GRCh38 released moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF578GCS bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF223SSQ, ENCFF229JRX, ENCFF619OWB 42050 ENCODE Processing Pipeline 6dd2e644e71b971775d48a2d75715525 https://www.encodeproject.org/files/ENCFF578GCS/@@download/ENCFF578GCS.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF294XAI bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF578GCS 140042 ENCODE Processing Pipeline e343fb5936a304eed0ad0d9cf587dd6d https://www.encodeproject.org/files/ENCFF294XAI/@@download/ENCFF294XAI.bigBed hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF811XME bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF304WER 173579 ENCODE Processing Pipeline cb43537282a8dc0a32e00fd1a3cb3dd2 https://www.encodeproject.org/files/ENCFF811XME/@@download/ENCFF811XME.bigBed hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF304WER bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF223SSQ, ENCFF229JRX, ENCFF619OWB 60721 ENCODE Processing Pipeline 03d66d5223fdbf6557b9ae28d5174c0f https://www.encodeproject.org/files/ENCFF304WER/@@download/ENCFF304WER.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF000VZX bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 316200936 Kevin Struhl, HMS 95d0ba4076b207e3ffffdbb23d7951dd https://www.encodeproject.org/files/ENCFF000VZX/@@download/ENCFF000VZX.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000VZY bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEV 1482819 Kevin Struhl, HMS d69de621e18108d9dc5aa51d91160d92 https://www.encodeproject.org/files/ENCFF000VZY/@@download/ENCFF000VZY.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000VZZ fastq reads ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 618237182 Kevin Struhl, HMS d776bf0aa786c19466e73ae7d8a3130d https://www.encodeproject.org/files/ENCFF000VZZ/@@download/ENCFF000VZZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released moderate library complexity, low read length, inconsistent control read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000WAB fastq reads ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 611306329 Kevin Struhl, HMS 0f29d1ec550c76c07a58bb3e64b61613 https://www.encodeproject.org/files/ENCFF000WAB/@@download/ENCFF000WAB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released moderate library complexity, low read length, inconsistent control read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000WAC bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 219202334 Kevin Struhl, HMS 5923ce5ea63beafeeead6b2e53bf247e https://www.encodeproject.org/files/ENCFF000WAC/@@download/ENCFF000WAC.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000WAE bigWig signal ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 159523650 Kevin Struhl, HMS cd01dd63f8dce3cb0dc86dfbd2ee7ce3 https://www.encodeproject.org/files/ENCFF000WAE/@@download/ENCFF000WAE.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001VEV bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 607937 Kevin Struhl, HMS f55bc8cd4c25fbd7bd1425355377e7b5 https://www.encodeproject.org/files/ENCFF001VEV/@@download/ENCFF001VEV.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CPC bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 315076 ENCODE Consortium Analysis Working Group f8e79da909dc1a5e6eb85eb558620f7e https://www.encodeproject.org/files/ENCFF002CPC/@@download/ENCFF002CPC.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF103NWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPC 710898 ENCODE Consortium 342ab2e90e0bad7adbc51d42c43ad3e7 https://www.encodeproject.org/files/ENCFF103NWQ/@@download/ENCFF103NWQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF920UGA bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF643CGH 216585698 ENCODE Processing Pipeline 1a60af2b8ce5ff29c9a1df6a3290dd0c https://www.encodeproject.org/files/ENCFF920UGA/@@download/ENCFF920UGA.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF498VCN bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF643CGH 561486475 ENCODE Processing Pipeline 1f3caf0b8587bfa601170d3656f1017c https://www.encodeproject.org/files/ENCFF498VCN/@@download/ENCFF498VCN.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF962YKV bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF643CGH 623490259 ENCODE Processing Pipeline 9c25fc03c86d96c597ce5e5472a82019 https://www.encodeproject.org/files/ENCFF962YKV/@@download/ENCFF962YKV.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF347TBE bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF643CGH 372351724 ENCODE Processing Pipeline 941eb79a74e0ee7914c5f25d208e2cdf https://www.encodeproject.org/files/ENCFF347TBE/@@download/ENCFF347TBE.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF126JJU bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF807MUK 620472524 ENCODE Processing Pipeline a1dee2520981ff70a2dc0d79ea83364f https://www.encodeproject.org/files/ENCFF126JJU/@@download/ENCFF126JJU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF058VAL bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF807MUK 216657710 ENCODE Processing Pipeline fd78fd9cc155a3733680efd72fd8020d https://www.encodeproject.org/files/ENCFF058VAL/@@download/ENCFF058VAL.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF629CYS bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF807MUK 372527851 ENCODE Processing Pipeline d6a06149bcf000de42f68f7103c39a20 https://www.encodeproject.org/files/ENCFF629CYS/@@download/ENCFF629CYS.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF966JJV bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF807MUK 558953208 ENCODE Processing Pipeline fdcfe3f8dc49a7bceff6ac0169d2be9a https://www.encodeproject.org/files/ENCFF966JJV/@@download/ENCFF966JJV.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF271UAB bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 92495099 ENCODE Processing Pipeline 0870d243b5c7ca1c9e573f331579d961 https://www.encodeproject.org/files/ENCFF271UAB/@@download/ENCFF271UAB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF939JTF bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 87118090 ENCODE Processing Pipeline 5518ee18ca0cf93e6d6cfcde36f1d48e https://www.encodeproject.org/files/ENCFF939JTF/@@download/ENCFF939JTF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF112JWF bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 256854772 ENCODE Processing Pipeline 77ecea8aa70265939d6bafc636309420 https://www.encodeproject.org/files/ENCFF112JWF/@@download/ENCFF112JWF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF556ZPR bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF350IOX 10236657 ENCODE Processing Pipeline b3d995a70bd66735b8699580ace121fc https://www.encodeproject.org/files/ENCFF556ZPR/@@download/ENCFF556ZPR.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF467NRS bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF350IOX, ENCFF655JXN, ENCFF911SLA 228205 ENCODE Processing Pipeline b44b4a58544f06561d144f4cb4004cef https://www.encodeproject.org/files/ENCFF467NRS/@@download/ENCFF467NRS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF379LEY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF467NRS 478731 ENCODE Processing Pipeline 7c6c5b15e1be78a8e6d9970ca9475b40 https://www.encodeproject.org/files/ENCFF379LEY/@@download/ENCFF379LEY.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF105DRJ bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 187994142 ENCODE Processing Pipeline cfccc4fcdcfdef36f1f2ede0ecba942f https://www.encodeproject.org/files/ENCFF105DRJ/@@download/ENCFF105DRJ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF410EFM bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 175181466 ENCODE Processing Pipeline d5678df6e17179bd2a1194391e25e1da https://www.encodeproject.org/files/ENCFF410EFM/@@download/ENCFF410EFM.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF655JXN bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 3243986 ENCODE Processing Pipeline 0dc3d0dfd191faaf756cd14b828a8fdf https://www.encodeproject.org/files/ENCFF655JXN/@@download/ENCFF655JXN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF911SLA bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 1155711 ENCODE Processing Pipeline 3ac3a421702105d770b9d7d562d971ee https://www.encodeproject.org/files/ENCFF911SLA/@@download/ENCFF911SLA.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF363BLT bed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF350IOX, ENCFF655JXN, ENCFF911SLA 140197 ENCODE Processing Pipeline 5c4af83d23088c2069829e094fab54a3 https://www.encodeproject.org/files/ENCFF363BLT/@@download/ENCFF363BLT.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF617QWH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF363BLT 275016 ENCODE Processing Pipeline a4ee30c662127bc3edc3e2959ebb59ce https://www.encodeproject.org/files/ENCFF617QWH/@@download/ENCFF617QWH.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF183ERM bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 174149075 ENCODE Processing Pipeline 55782dfdaeb2f4d7baeb727486538fe4 https://www.encodeproject.org/files/ENCFF183ERM/@@download/ENCFF183ERM.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF623HYS bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 176758250 ENCODE Processing Pipeline 045c8b17434907f7677c417deaa3eff4 https://www.encodeproject.org/files/ENCFF623HYS/@@download/ENCFF623HYS.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF905UCS bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF655JXN 8401884 ENCODE Processing Pipeline beada5a58b3a27d322e55b6c46513205 https://www.encodeproject.org/files/ENCFF905UCS/@@download/ENCFF905UCS.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF239BIV bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 255956077 ENCODE Processing Pipeline 2bfc9f2f99af9a67f2103b6ca42c48fb https://www.encodeproject.org/files/ENCFF239BIV/@@download/ENCFF239BIV.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF350IOX bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 4165315 ENCODE Processing Pipeline 134fda1e5482ece72d4872bb4755708b https://www.encodeproject.org/files/ENCFF350IOX/@@download/ENCFF350IOX.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF311TXJ bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF911SLA 2491649 ENCODE Processing Pipeline c57d9ce1eb02ebc43f41a155b5d6778f https://www.encodeproject.org/files/ENCFF311TXJ/@@download/ENCFF311TXJ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF420UUZ bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 86475869 ENCODE Processing Pipeline cf1618219614ba6ea01ec8faf1e0bd13 https://www.encodeproject.org/files/ENCFF420UUZ/@@download/ENCFF420UUZ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF006ASD bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC 10239585 ENCODE Processing Pipeline fbf3aa0f17865e52a4673ee6c4203785 https://www.encodeproject.org/files/ENCFF006ASD/@@download/ENCFF006ASD.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF616TUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF746RQR 276921 ENCODE Processing Pipeline f33a6211a6b7e9948c12fa5ad535dec6 https://www.encodeproject.org/files/ENCFF616TUF/@@download/ENCFF616TUF.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF510NDO bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC, ENCFF419RSJ, ENCFF647COW, ENCFF886QMO 223243 ENCODE Processing Pipeline 983aa6aea5376f2ade8580af241899ba https://www.encodeproject.org/files/ENCFF510NDO/@@download/ENCFF510NDO.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF895UDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF510NDO 472330 ENCODE Processing Pipeline 42d06a0d62d4a6d014b7b7a29367b3e7 https://www.encodeproject.org/files/ENCFF895UDQ/@@download/ENCFF895UDQ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF273HRD bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 187897705 ENCODE Processing Pipeline b2da0a9ebc121896ee4b3315ed48b463 https://www.encodeproject.org/files/ENCFF273HRD/@@download/ENCFF273HRD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF619WFM bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 92484150 ENCODE Processing Pipeline 5c8d3e1ff485c46287729d225be46d26 https://www.encodeproject.org/files/ENCFF619WFM/@@download/ENCFF619WFM.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF814DIE bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 176674514 ENCODE Processing Pipeline 1a21b55b341281c632e8ae6d58ad5bba https://www.encodeproject.org/files/ENCFF814DIE/@@download/ENCFF814DIE.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF886QMO bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 1153183 ENCODE Processing Pipeline 48c52eb3504dc4c4405494b441d8b7cd https://www.encodeproject.org/files/ENCFF886QMO/@@download/ENCFF886QMO.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF647COW bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 3226092 ENCODE Processing Pipeline 0060c21df267e3c027a2e1b67a81a0dd https://www.encodeproject.org/files/ENCFF647COW/@@download/ENCFF647COW.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF522KNH bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF647COW 8369686 ENCODE Processing Pipeline ba16adab7cf3f25a17c1d53cdea01af5 https://www.encodeproject.org/files/ENCFF522KNH/@@download/ENCFF522KNH.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF004JPO bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF886QMO 2488515 ENCODE Processing Pipeline 141f542e79150149006c8a68f9a1a6d3 https://www.encodeproject.org/files/ENCFF004JPO/@@download/ENCFF004JPO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF129RNC bed narrowPeak peaks and background as input for IDR ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 4163046 ENCODE Processing Pipeline a1e1f2314b7b96e5976879e1388517b3 https://www.encodeproject.org/files/ENCFF129RNC/@@download/ENCFF129RNC.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF746RQR bed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC, ENCFF419RSJ, ENCFF647COW, ENCFF886QMO 141224 ENCODE Processing Pipeline d57c73e250904e603c3796c030552d51 https://www.encodeproject.org/files/ENCFF746RQR/@@download/ENCFF746RQR.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF608VRV fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 1 ENCFF679KEU 919993225 Michael Snyder, Stanford 919ce889178b2194c0ec242478496c0d https://www.encodeproject.org/files/ENCFF608VRV/@@download/ENCFF608VRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF520VGY fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 1 ENCFF655NYA 1018293764 Michael Snyder, Stanford ae2cd8232e4b8bc50707b3c492eed2fe https://www.encodeproject.org/files/ENCFF520VGY/@@download/ENCFF520VGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF679KEU fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 2 ENCFF608VRV 950067173 Michael Snyder, Stanford aeb512cfe94cdf8cc75bdb182e087086 https://www.encodeproject.org/files/ENCFF679KEU/@@download/ENCFF679KEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655NYA fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 2 ENCFF520VGY 1046542897 Michael Snyder, Stanford 9e142c2377422e0c79ae17547335964e https://www.encodeproject.org/files/ENCFF655NYA/@@download/ENCFF655NYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF619GMD bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF520VGY, ENCFF655NYA, ENCFF807MUK 1660320050 ENCODE Processing Pipeline 7574f073a2cfb1159667dd3800e8554c https://www.encodeproject.org/files/ENCFF619GMD/@@download/ENCFF619GMD.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF439QZV bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF608VRV, ENCFF679KEU, ENCFF807MUK 1382142275 ENCODE Processing Pipeline 67a28844c9caaefb83426aeb06cd34b6 https://www.encodeproject.org/files/ENCFF439QZV/@@download/ENCFF439QZV.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF066RUQ fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 1 ENCFF964VCI 3275391801 Michael Snyder, Stanford b4f26ce62c7b8bd62012b1470c825434 https://www.encodeproject.org/files/ENCFF066RUQ/@@download/ENCFF066RUQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF964VCI fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 2 ENCFF066RUQ 3720049244 Michael Snyder, Stanford 8ef7103ea3cc92884404954e24b68196 https://www.encodeproject.org/files/ENCFF964VCI/@@download/ENCFF964VCI.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF487QUS fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 2 ENCFF156SNY 5593989595 Michael Snyder, Stanford 9624e7a6b5a01068d8b8ec1b345b3a4c https://www.encodeproject.org/files/ENCFF487QUS/@@download/ENCFF487QUS.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF156SNY fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 1 ENCFF487QUS 5015233046 Michael Snyder, Stanford 0f6048bf30cbe1a67c84d3caa362d1b8 https://www.encodeproject.org/files/ENCFF156SNY/@@download/ENCFF156SNY.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF587ZOR bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF643CGH, ENCFF964VCI 5830602953 ENCODE Processing Pipeline 975c4340b4ce04669220d8b1eda4dbb2 https://www.encodeproject.org/files/ENCFF587ZOR/@@download/ENCFF587ZOR.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF055PTG bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF807MUK, ENCFF964VCI 5835431875 ENCODE Processing Pipeline fd9924d24cfa5a4f6879e5a6879b7852 https://www.encodeproject.org/files/ENCFF055PTG/@@download/ENCFF055PTG.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF065CIX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF643CGH 3961420523 ENCODE Processing Pipeline b0a02feebd03a540a2c74230d265abf8 https://www.encodeproject.org/files/ENCFF065CIX/@@download/ENCFF065CIX.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF472SWE bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF807MUK 8746766721 ENCODE Processing Pipeline 5a2835408243373cb95642f73eab7de8 https://www.encodeproject.org/files/ENCFF472SWE/@@download/ENCFF472SWE.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF250HJQ bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF643CGH 8733583988 ENCODE Processing Pipeline be616218e1d7a5d1706f867cdcd68c30 https://www.encodeproject.org/files/ENCFF250HJQ/@@download/ENCFF250HJQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF807RLO bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF643CGH, ENCFF964VCI 2558569209 ENCODE Processing Pipeline bb8c5262b824bd68e508f9b5ed0e3992 https://www.encodeproject.org/files/ENCFF807RLO/@@download/ENCFF807RLO.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF708NLM bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF807MUK, ENCFF964VCI 2555054563 ENCODE Processing Pipeline e8e1ad92e262be4c4f80c8ecb45f8402 https://www.encodeproject.org/files/ENCFF708NLM/@@download/ENCFF708NLM.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF341WGX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF807MUK 3947295810 ENCODE Processing Pipeline 71fe628b9fece7d2a014fe4ec8a1dd5d https://www.encodeproject.org/files/ENCFF341WGX/@@download/ENCFF341WGX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599NIB bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 1029300813 ENCODE Processing Pipeline 7a1df70f12c98fb48afcf1458dbcf53b https://www.encodeproject.org/files/ENCFF599NIB/@@download/ENCFF599NIB.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF583OFU bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 1135894452 ENCODE Processing Pipeline ac8630113e3af7c188ac4272abe6f04f https://www.encodeproject.org/files/ENCFF583OFU/@@download/ENCFF583OFU.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF058FAY bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 1806105045 ENCODE Processing Pipeline 6a839ca5a0abbac1711de95105854878 https://www.encodeproject.org/files/ENCFF058FAY/@@download/ENCFF058FAY.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF273UKE bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 999705548 ENCODE Processing Pipeline feeb39c2c9c13fc8dcf93f722e6f99d8 https://www.encodeproject.org/files/ENCFF273UKE/@@download/ENCFF273UKE.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF744PJU bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 1390076667 ENCODE Processing Pipeline 9e1210818e3459cd83f9f263ccb2a280 https://www.encodeproject.org/files/ENCFF744PJU/@@download/ENCFF744PJU.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF261BLY bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 2167710119 ENCODE Processing Pipeline ec75df75f3ec1fab21b7ad3ddaee615c https://www.encodeproject.org/files/ENCFF261BLY/@@download/ENCFF261BLY.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF047ZBU bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 6753854 ENCODE Processing Pipeline d27b072c741a350d638f0f1bba53c8a4 https://www.encodeproject.org/files/ENCFF047ZBU/@@download/ENCFF047ZBU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF922PHV bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 6969742 ENCODE Processing Pipeline 6700d7b2ae8dec2c164fcf17c1a6a239 https://www.encodeproject.org/files/ENCFF922PHV/@@download/ENCFF922PHV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF513BIR bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 7263291 ENCODE Processing Pipeline b206246664015eea87cbeb598db6e41c https://www.encodeproject.org/files/ENCFF513BIR/@@download/ENCFF513BIR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF522EKF bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF047ZBU 13190169 ENCODE Processing Pipeline c3692c1b7c0cce6374df18c3903ec231 https://www.encodeproject.org/files/ENCFF522EKF/@@download/ENCFF522EKF.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF266LQS bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF922PHV 13320118 ENCODE Processing Pipeline 44aa2dfc2a4e078b472dc989bf65560a https://www.encodeproject.org/files/ENCFF266LQS/@@download/ENCFF266LQS.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF467UYM bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF513BIR 13088742 ENCODE Processing Pipeline 7b26051de8c5d85b727d1a9dc0928bf4 https://www.encodeproject.org/files/ENCFF467UYM/@@download/ENCFF467UYM.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723HNB bed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF001TDO, ENCFF047ZBU, ENCFF513BIR, ENCFF922PHV 351315 ENCODE Processing Pipeline e34a701ea0d14fba11bd808f5686bc43 https://www.encodeproject.org/files/ENCFF723HNB/@@download/ENCFF723HNB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF506YUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF723HNB 741298 ENCODE Processing Pipeline 2e45cf7b2c6116c0168d78788522ada2 https://www.encodeproject.org/files/ENCFF506YUZ/@@download/ENCFF506YUZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF142EVF bed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF001TDO, ENCFF047ZBU, ENCFF513BIR, ENCFF922PHV 520152 ENCODE Processing Pipeline 7d07051af43759929280cae1252a92bb https://www.encodeproject.org/files/ENCFF142EVF/@@download/ENCFF142EVF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF595EAH bigBed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF142EVF 1001221 ENCODE Processing Pipeline 8208743005eb3cbb631a9497290bf85a https://www.encodeproject.org/files/ENCFF595EAH/@@download/ENCFF595EAH.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204AEJ bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 998986030 ENCODE Processing Pipeline 562c0e186a61811001f5ea1b426caa36 https://www.encodeproject.org/files/ENCFF204AEJ/@@download/ENCFF204AEJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF406EMS bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 1009816661 ENCODE Processing Pipeline ebc6547935d3e653e8b57d2660153d97 https://www.encodeproject.org/files/ENCFF406EMS/@@download/ENCFF406EMS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF822DCZ bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 1931867759 ENCODE Processing Pipeline ddbf757e4a5447be51a680f2abe4836b https://www.encodeproject.org/files/ENCFF822DCZ/@@download/ENCFF822DCZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF861JYI bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 1010765495 ENCODE Processing Pipeline 45f22dc9134ce031539646364e29842a https://www.encodeproject.org/files/ENCFF861JYI/@@download/ENCFF861JYI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF624WHW bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 1319147973 ENCODE Processing Pipeline e46facb54238426ba3a3ed6afac6e8a3 https://www.encodeproject.org/files/ENCFF624WHW/@@download/ENCFF624WHW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF484QFK bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 2091314690 ENCODE Processing Pipeline 01e7f3ac165db002fb25237354d616aa https://www.encodeproject.org/files/ENCFF484QFK/@@download/ENCFF484QFK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF896HNQ bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 6663021 ENCODE Processing Pipeline ffc924ae6ae6a57e6cb7b41efdd2e215 https://www.encodeproject.org/files/ENCFF896HNQ/@@download/ENCFF896HNQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF692VBI bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF896HNQ 13416569 ENCODE Processing Pipeline c37ed97f6dc894409ebb8df3e7d789c3 https://www.encodeproject.org/files/ENCFF692VBI/@@download/ENCFF692VBI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF214KDB bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 7228409 ENCODE Processing Pipeline 8f957b525788a28fa4bb20d0076a8139 https://www.encodeproject.org/files/ENCFF214KDB/@@download/ENCFF214KDB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF018UXZ bed narrowPeak peaks and background as input for IDR ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 6695465 ENCODE Processing Pipeline d72c6990ee5548a90aba7311fcf408f3 https://www.encodeproject.org/files/ENCFF018UXZ/@@download/ENCFF018UXZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF493NSR bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF018UXZ 13220781 ENCODE Processing Pipeline 6e49623a0763648e372ac107d67563c5 https://www.encodeproject.org/files/ENCFF493NSR/@@download/ENCFF493NSR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF993EVD bigBed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF903KEI 895238 ENCODE Processing Pipeline a5693e7f83ed67e8ffbe584dfc282cd6 https://www.encodeproject.org/files/ENCFF993EVD/@@download/ENCFF993EVD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF401NCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF595JHJ 597476 ENCODE Processing Pipeline fb6cd3b184a285e40f1e93102a8911a7 https://www.encodeproject.org/files/ENCFF401NCJ/@@download/ENCFF401NCJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF595JHJ bed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF018UXZ, ENCFF214KDB, ENCFF419RSJ, ENCFF896HNQ 273578 ENCODE Processing Pipeline 71aa933ad0087cc022a722b95f63a216 https://www.encodeproject.org/files/ENCFF595JHJ/@@download/ENCFF595JHJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF597ZXY bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF214KDB 13210293 ENCODE Processing Pipeline 7733f3400f69178faf91d0686ec9f51e https://www.encodeproject.org/files/ENCFF597ZXY/@@download/ENCFF597ZXY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF903KEI bed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF018UXZ, ENCFF214KDB, ENCFF419RSJ, ENCFF896HNQ 462798 ENCODE Processing Pipeline 31c9f8d275d0a7b221684a8233e3157e https://www.encodeproject.org/files/ENCFF903KEI/@@download/ENCFF903KEI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000VZF bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000VZN 302546889 Michael Snyder, Stanford f4f6cd23620e64e1d11ef30807a97f65 https://www.encodeproject.org/files/ENCFF000VZF/@@download/ENCFF000VZF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZG bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000VZW 531699913 Michael Snyder, Stanford 6cef37b54577399d804794bd49f4f946 https://www.encodeproject.org/files/ENCFF000VZG/@@download/ENCFF000VZG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZH bigBed narrowPeak peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VET 381124 Michael Snyder, Stanford c2c3f6eef9212ebb5b6812f46ddbc627 https://www.encodeproject.org/files/ENCFF000VZH/@@download/ENCFF000VZH.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZI bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 3 ENCFF000WAK 776778422 Michael Snyder, Stanford 6bbdb30bedc30b87a0fea555bbca64bf https://www.encodeproject.org/files/ENCFF000VZI/@@download/ENCFF000VZI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZJ bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 4 ENCFF000WBF 818431727 Michael Snyder, Stanford 6da37769c2ef666c4e8150817e89ab36 https://www.encodeproject.org/files/ENCFF000VZJ/@@download/ENCFF000VZJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZM bigWig signal ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 457788624 Michael Snyder, Stanford 949fe058283b7e197f02b4627ed63cf9 https://www.encodeproject.org/files/ENCFF000VZM/@@download/ENCFF000VZM.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000VZN fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 1 1 28 single-ended 237958534 Michael Snyder, Stanford 35029320fbecc6b33fde639a063b2440 https://www.encodeproject.org/files/ENCFF000VZN/@@download/ENCFF000VZN.fastq.gz Illumina Genome Analyzer /files/ENCFF000VXH/ released biological replicates with identical biosample insufficient read length ENCFF000VZW fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 2 1 28 single-ended 414446290 Michael Snyder, Stanford b0d934eec790fe6414f07e1a1e9903ff https://www.encodeproject.org/files/ENCFF000VZW/@@download/ENCFF000VZW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VXG/ released biological replicates with identical biosample insufficient read length ENCFF000WAK fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 3 1 28 single-ended 593919805 Michael Snyder, Stanford 447b804ba647faea4f99e1243c8bcbf8 https://www.encodeproject.org/files/ENCFF000WAK/@@download/ENCFF000WAK.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WBF fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 4 1 28 single-ended 646360175 Michael Snyder, Stanford 7abf9f9908e538f1438594dd0d89ad37 https://www.encodeproject.org/files/ENCFF000WBF/@@download/ENCFF000WBF.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VET bed narrowPeak peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 153709 Michael Snyder, Stanford 4bf824cdf291406a4dc5d783a5b63a5c https://www.encodeproject.org/files/ENCFF001VET/@@download/ENCFF001VET.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CPA bed narrowPeak optimal idr thresholded peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 414083 ENCODE Consortium Analysis Working Group 536e19e1527ff5f05e1cbf59582972ff https://www.encodeproject.org/files/ENCFF002CPA/@@download/ENCFF002CPA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF956GSR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPA 933360 ENCODE Consortium fb8841fde7ea717da21ac78b9e42182b https://www.encodeproject.org/files/ENCFF956GSR/@@download/ENCFF956GSR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF360YAQ bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF807MUK, ENCFF849OLW 2854098932 ENCODE Processing Pipeline 29b8a9f62932bf5b025161a08fdaf6cc https://www.encodeproject.org/files/ENCFF360YAQ/@@download/ENCFF360YAQ.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF838KAW bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF807MUK, ENCFF881YFO 3811709858 ENCODE Processing Pipeline 70d7c2f3714e239f66e8f32661dcc0b3 https://www.encodeproject.org/files/ENCFF838KAW/@@download/ENCFF838KAW.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF881YFO fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF551RMT 1847840534 Michael Snyder, Stanford 1f1c4eea9bf51d28f2dd954b0352a4db SRA:SRR5112011 https://www.encodeproject.org/files/ENCFF881YFO/@@download/ENCFF881YFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF315WXD fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF849OLW 1362406100 Michael Snyder, Stanford 5502bdce04a369622d586363e9ef7598 SRA:SRR5112012 https://www.encodeproject.org/files/ENCFF315WXD/@@download/ENCFF315WXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF551RMT fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF881YFO 1788657333 Michael Snyder, Stanford 9d6d393908bc4942b65666f34222b1a3 SRA:SRR5112011 https://www.encodeproject.org/files/ENCFF551RMT/@@download/ENCFF551RMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF849OLW fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF315WXD 1324422299 Michael Snyder, Stanford b6e54101ffbbad36e436100083ad9f94 SRA:SRR5112012 https://www.encodeproject.org/files/ENCFF849OLW/@@download/ENCFF849OLW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF640ZFH bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF807MUK, ENCFF881YFO 3018905780 ENCODE Processing Pipeline c4173ed7bfe1d56d8f90e32d3850a69e https://www.encodeproject.org/files/ENCFF640ZFH/@@download/ENCFF640ZFH.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF921QCO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF807MUK, ENCFF849OLW 2067515529 ENCODE Processing Pipeline 77f9d4cb0733a81085f625135a384d33 https://www.encodeproject.org/files/ENCFF921QCO/@@download/ENCFF921QCO.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF773LZZ bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 857826007 ENCODE Processing Pipeline 02b45e4f8265b10349369bb8f4dcecdf https://www.encodeproject.org/files/ENCFF773LZZ/@@download/ENCFF773LZZ.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF166BQM bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 958443880 ENCODE Processing Pipeline 87e059a5df05540855d98859ad939cc8 https://www.encodeproject.org/files/ENCFF166BQM/@@download/ENCFF166BQM.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF060HWM bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 1687267738 ENCODE Processing Pipeline 557d5285b8dd9ace8eedf8e7c7fa4d14 https://www.encodeproject.org/files/ENCFF060HWM/@@download/ENCFF060HWM.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF263ZFX bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 740122804 ENCODE Processing Pipeline 2513694f8a1ebf53f211f6685f9c1529 https://www.encodeproject.org/files/ENCFF263ZFX/@@download/ENCFF263ZFX.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF429UOC bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 899333477 ENCODE Processing Pipeline c177407ec10fe52bce39dd431369585b https://www.encodeproject.org/files/ENCFF429UOC/@@download/ENCFF429UOC.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF096FPV bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 6802246 ENCODE Processing Pipeline f5203c5698fefd6b48f9c515ad8427b2 https://www.encodeproject.org/files/ENCFF096FPV/@@download/ENCFF096FPV.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF193RDB bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 1697900303 ENCODE Processing Pipeline b12a57c837c1af9d777eaa9432d93337 https://www.encodeproject.org/files/ENCFF193RDB/@@download/ENCFF193RDB.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF672AJR bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF869HSY 13069359 ENCODE Processing Pipeline 9a82b2e6422e495b9263305465c2b7ff https://www.encodeproject.org/files/ENCFF672AJR/@@download/ENCFF672AJR.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF902EUL bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 6093521 ENCODE Processing Pipeline 8f43c053ef4719e21c74b514be24f543 https://www.encodeproject.org/files/ENCFF902EUL/@@download/ENCFF902EUL.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF866DMK bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF902EUL 12955709 ENCODE Processing Pipeline 715546640b1fca03d592f64253b88f0a https://www.encodeproject.org/files/ENCFF866DMK/@@download/ENCFF866DMK.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF869HSY bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 7051964 ENCODE Processing Pipeline fdd6080bce4adf0bb2d486f8254c47ba https://www.encodeproject.org/files/ENCFF869HSY/@@download/ENCFF869HSY.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF927ELR bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF096FPV 13165790 ENCODE Processing Pipeline 80e3f9e056025a9f3ca0403f08b8f981 https://www.encodeproject.org/files/ENCFF927ELR/@@download/ENCFF927ELR.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF300OJT bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF643CGH, ENCFF849OLW 2854705504 ENCODE Processing Pipeline 37ce24249701d71a9b840c902d9e9425 https://www.encodeproject.org/files/ENCFF300OJT/@@download/ENCFF300OJT.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF548STS bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF643CGH, ENCFF849OLW 2070136854 ENCODE Processing Pipeline 69fa08c6b6633cc677dc1909df8232c6 https://www.encodeproject.org/files/ENCFF548STS/@@download/ENCFF548STS.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF822WHM bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF643CGH, ENCFF881YFO 3812008266 ENCODE Processing Pipeline 4d97a05f28b0d3e3fbc076c9eda3154a https://www.encodeproject.org/files/ENCFF822WHM/@@download/ENCFF822WHM.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF360EFO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF643CGH, ENCFF881YFO 3022717486 ENCODE Processing Pipeline d1f23fd5d6b37d1afd583710831f74cd https://www.encodeproject.org/files/ENCFF360EFO/@@download/ENCFF360EFO.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF391HXH bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 905373903 ENCODE Processing Pipeline b6502921dd36f5b52cf5de4ab6a9e92c https://www.encodeproject.org/files/ENCFF391HXH/@@download/ENCFF391HXH.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF002LJX bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 743324732 ENCODE Processing Pipeline 539f5e6a1aeacc3eeccaa3c072c9baf6 https://www.encodeproject.org/files/ENCFF002LJX/@@download/ENCFF002LJX.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF980GMH bed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF112GWM, ENCFF419RSJ, ENCFF956ZCR, ENCFF957SYD 542026 ENCODE Processing Pipeline 20e3ee66585a87ddcdd3bfb0a60f48d3 https://www.encodeproject.org/files/ENCFF980GMH/@@download/ENCFF980GMH.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF971VHK bed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF112GWM, ENCFF419RSJ, ENCFF956ZCR, ENCFF957SYD 737606 ENCODE Processing Pipeline d6ded18f652f6451324d683126c15c78 https://www.encodeproject.org/files/ENCFF971VHK/@@download/ENCFF971VHK.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF749YTS bigBed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF971VHK 1404973 ENCODE Processing Pipeline 5359e4d0580cbbb3d091708432fbb13c https://www.encodeproject.org/files/ENCFF749YTS/@@download/ENCFF749YTS.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF565ZLF bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 899595493 ENCODE Processing Pipeline 29853729eb1e7b169e097a2dd9e88022 https://www.encodeproject.org/files/ENCFF565ZLF/@@download/ENCFF565ZLF.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF942LAH bigBed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF980GMH 1110210 ENCODE Processing Pipeline e0bf0ea67906159673e30a19128e452f https://www.encodeproject.org/files/ENCFF942LAH/@@download/ENCFF942LAH.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF483RCB bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 1594782063 ENCODE Processing Pipeline c345b4ff79b0d420a504091affbc3d67 https://www.encodeproject.org/files/ENCFF483RCB/@@download/ENCFF483RCB.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF335EMP bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 851966719 ENCODE Processing Pipeline dffe8895091c36bf6835f89c888b2c82 https://www.encodeproject.org/files/ENCFF335EMP/@@download/ENCFF335EMP.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF858QNH bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 1694359210 ENCODE Processing Pipeline 60a053b5a305b418919187ae06828d6f https://www.encodeproject.org/files/ENCFF858QNH/@@download/ENCFF858QNH.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF621OLL bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF957SYD 12923116 ENCODE Processing Pipeline 485729c1ddb3d81c60d58541f05edf6b https://www.encodeproject.org/files/ENCFF621OLL/@@download/ENCFF621OLL.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF227UQV bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF112GWM 13093616 ENCODE Processing Pipeline 8c8c20e9f3098e6a90b0021b985bf7c6 https://www.encodeproject.org/files/ENCFF227UQV/@@download/ENCFF227UQV.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF403XWJ bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF956ZCR 12720709 ENCODE Processing Pipeline b65774db79b9a104fac65de53672786b https://www.encodeproject.org/files/ENCFF403XWJ/@@download/ENCFF403XWJ.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF957SYD bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 5968661 ENCODE Processing Pipeline 215beb957febd2e8fdacc05a82edb201 https://www.encodeproject.org/files/ENCFF957SYD/@@download/ENCFF957SYD.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF112GWM bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 6663747 ENCODE Processing Pipeline 5695b2c18e9b6d6d25dfe27d23645f38 https://www.encodeproject.org/files/ENCFF112GWM/@@download/ENCFF112GWM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF956ZCR bed narrowPeak peaks and background as input for IDR ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 6754552 ENCODE Processing Pipeline 22d3c6bd03e50388ff40bc396e08a64f https://www.encodeproject.org/files/ENCFF956ZCR/@@download/ENCFF956ZCR.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF515HWO bed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FPV, ENCFF869HSY, ENCFF902EUL 480476 ENCODE Processing Pipeline 6e3685707be0e66d9511c5d64b130d18 https://www.encodeproject.org/files/ENCFF515HWO/@@download/ENCFF515HWO.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF362HQV bigBed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF515HWO 1045907 ENCODE Processing Pipeline 912df3987697fe78db3936e16c190d34 https://www.encodeproject.org/files/ENCFF362HQV/@@download/ENCFF362HQV.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF405NFV bed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FPV, ENCFF869HSY, ENCFF902EUL 684545 ENCODE Processing Pipeline fce6b7bb691da8b4efbb92e321b433a9 https://www.encodeproject.org/files/ENCFF405NFV/@@download/ENCFF405NFV.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF657MVE bigBed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF405NFV 1347793 ENCODE Processing Pipeline e2fa93e5e99e61d33ae741fd8796fbf1 https://www.encodeproject.org/files/ENCFF657MVE/@@download/ENCFF657MVE.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF741BVE fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF317NXG 1680062999 Michael Snyder, Stanford d936273f84807bbb8060f43fd52b369d SRA:SRR6213000 https://www.encodeproject.org/files/ENCFF741BVE/@@download/ENCFF741BVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released low read depth, mild to moderate bottlenecking ENCFF531UQG fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF044LTS 1826452886 Michael Snyder, Stanford a39cfaa96adaab3f25c37e25bb2c3601 SRA:SRR6212999 https://www.encodeproject.org/files/ENCFF531UQG/@@download/ENCFF531UQG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released low read depth, mild to moderate bottlenecking ENCFF317NXG fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF741BVE 1616468313 Michael Snyder, Stanford f0a2aef25000f14514ffa0371d16952e SRA:SRR6213000 https://www.encodeproject.org/files/ENCFF317NXG/@@download/ENCFF317NXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released low read depth, mild to moderate bottlenecking ENCFF044LTS fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF531UQG 1759562116 Michael Snyder, Stanford 52c43eaeb8f9831239bcb48fcfc4c47c SRA:SRR6212999 https://www.encodeproject.org/files/ENCFF044LTS/@@download/ENCFF044LTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released low read depth, mild to moderate bottlenecking ENCFF252NHP bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF807MUK 3001222249 ENCODE Processing Pipeline 254263894d22164fa5676905536f9120 https://www.encodeproject.org/files/ENCFF252NHP/@@download/ENCFF252NHP.bam hg19 released low read depth, mild to moderate bottlenecking ENCFF037RQQ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF741BVE, ENCFF807MUK 3006665060 ENCODE Processing Pipeline 70d5bf2c52433d3e9d38e40a4a22e08a https://www.encodeproject.org/files/ENCFF037RQQ/@@download/ENCFF037RQQ.bam hg19 released low read depth, mild to moderate bottlenecking ENCFF678OPA bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 1040617485 ENCODE Processing Pipeline fd439c4d7337a4c9caa01d6257ab7c80 https://www.encodeproject.org/files/ENCFF678OPA/@@download/ENCFF678OPA.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF325DWJ bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 1029512272 ENCODE Processing Pipeline d2e96e8e6a818c02a140e1d2b183d07c https://www.encodeproject.org/files/ENCFF325DWJ/@@download/ENCFF325DWJ.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF688SES bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 1787873070 ENCODE Processing Pipeline ea690a46e4fb13fd801237e81f9fe5ce https://www.encodeproject.org/files/ENCFF688SES/@@download/ENCFF688SES.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF581XVC bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 928808609 ENCODE Processing Pipeline 8c8b7f42713aa768fa8a426c4ed14381 https://www.encodeproject.org/files/ENCFF581XVC/@@download/ENCFF581XVC.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF061YZT bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 924107484 ENCODE Processing Pipeline ee1d8204dc45c93d64d609c88ec2a35e https://www.encodeproject.org/files/ENCFF061YZT/@@download/ENCFF061YZT.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF998ZHO bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 1861042771 ENCODE Processing Pipeline 0b5ef6c67d049a898973a76468b8fc70 https://www.encodeproject.org/files/ENCFF998ZHO/@@download/ENCFF998ZHO.bigWig hg19 released low read depth, mild to moderate bottlenecking ENCFF225TLM bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 6637467 ENCODE Processing Pipeline 56d8b699f70428bd1566f7c6c2fe4a0d https://www.encodeproject.org/files/ENCFF225TLM/@@download/ENCFF225TLM.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF599YTI bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF938MOR 12995632 ENCODE Processing Pipeline aaa6d24c4ef86de935ed7bdf81267039 https://www.encodeproject.org/files/ENCFF599YTI/@@download/ENCFF599YTI.bigBed hg19 released low read depth, mild to moderate bottlenecking ENCFF640EFU bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 7068555 ENCODE Processing Pipeline ec0756f6b5cb528468d14db20ab920cb https://www.encodeproject.org/files/ENCFF640EFU/@@download/ENCFF640EFU.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF271CZX bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF225TLM 13180282 ENCODE Processing Pipeline 596d6c5790498a31270831f7350261bd https://www.encodeproject.org/files/ENCFF271CZX/@@download/ENCFF271CZX.bigBed hg19 released low read depth, mild to moderate bottlenecking ENCFF938MOR bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 6540097 ENCODE Processing Pipeline cbc8a15cdab8f4e87b0f7d36e768ecd3 https://www.encodeproject.org/files/ENCFF938MOR/@@download/ENCFF938MOR.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF586UYJ bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF640EFU 13136741 ENCODE Processing Pipeline 8fc9be4bb250988d7bf00d82eb98c0dc https://www.encodeproject.org/files/ENCFF586UYJ/@@download/ENCFF586UYJ.bigBed hg19 released low read depth, mild to moderate bottlenecking ENCFF251IUU bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF643CGH, ENCFF741BVE 3591293425 ENCODE Processing Pipeline acafeea6b11e6ec5f092fc22f77d668e https://www.encodeproject.org/files/ENCFF251IUU/@@download/ENCFF251IUU.bam GRCh38 released low read depth, mild to moderate bottlenecking ENCFF141CYV bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF643CGH 3832695793 ENCODE Processing Pipeline 6e18d980c30f9292d515b13316f9cc33 https://www.encodeproject.org/files/ENCFF141CYV/@@download/ENCFF141CYV.bam GRCh38 released low read depth, mild to moderate bottlenecking ENCFF860ICZ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF643CGH, ENCFF741BVE 3010711139 ENCODE Processing Pipeline 401dfcf0a8a2b87044b73e103c62b290 https://www.encodeproject.org/files/ENCFF860ICZ/@@download/ENCFF860ICZ.bam GRCh38 released low read depth, mild to moderate bottlenecking ENCFF556ZRU bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF643CGH 3005696308 ENCODE Processing Pipeline c5f720fd17e007a75418900b6f114302 https://www.encodeproject.org/files/ENCFF556ZRU/@@download/ENCFF556ZRU.bam GRCh38 released low read depth, mild to moderate bottlenecking ENCFF630HZQ bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 6752207 ENCODE Processing Pipeline d311ae4b7695db30793e32eae8b20ef6 https://www.encodeproject.org/files/ENCFF630HZQ/@@download/ENCFF630HZQ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF648YPN bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 6484811 ENCODE Processing Pipeline 2320afa331387512607adc8bc08de83c https://www.encodeproject.org/files/ENCFF648YPN/@@download/ENCFF648YPN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF987GMB bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 1141395610 ENCODE Processing Pipeline a2adbe6903953206931f71641fa570a5 https://www.encodeproject.org/files/ENCFF987GMB/@@download/ENCFF987GMB.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF008BUH bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 935348735 ENCODE Processing Pipeline db5fcade710699cc7c1721cb154e8510 https://www.encodeproject.org/files/ENCFF008BUH/@@download/ENCFF008BUH.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF936LIP bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 1674469738 ENCODE Processing Pipeline bcf7a2be60203008c33d5508e4c7cd34 https://www.encodeproject.org/files/ENCFF936LIP/@@download/ENCFF936LIP.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF009CKM bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 957162060 ENCODE Processing Pipeline e51ddd3f4a3ce085a6bdea0774c3795a https://www.encodeproject.org/files/ENCFF009CKM/@@download/ENCFF009CKM.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF292DTW bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 916223237 ENCODE Processing Pipeline fc49774a7551d81f7e36088aad98f497 https://www.encodeproject.org/files/ENCFF292DTW/@@download/ENCFF292DTW.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF710EKC bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 1873474912 ENCODE Processing Pipeline 377833460142a54b86745af0da1de2d5 https://www.encodeproject.org/files/ENCFF710EKC/@@download/ENCFF710EKC.bigWig GRCh38 released low read depth, mild to moderate bottlenecking ENCFF616VIZ bed narrowPeak peaks and background as input for IDR ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 6855311 ENCODE Processing Pipeline a3d5cc4669923fd99a298b9c2c99351e https://www.encodeproject.org/files/ENCFF616VIZ/@@download/ENCFF616VIZ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF892EBV bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF630HZQ 13426959 ENCODE Processing Pipeline 7d851777f6ffd4ed1512dbce12b486d7 https://www.encodeproject.org/files/ENCFF892EBV/@@download/ENCFF892EBV.bigBed GRCh38 released low read depth, mild to moderate bottlenecking ENCFF102FGL bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF648YPN 13031148 ENCODE Processing Pipeline bed55e2315ec87457eec489443d065fc https://www.encodeproject.org/files/ENCFF102FGL/@@download/ENCFF102FGL.bigBed GRCh38 released low read depth, mild to moderate bottlenecking ENCFF765OEN bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF616VIZ 12910693 ENCODE Processing Pipeline 9de6480084bfbe2bdf13caf7cba549ed https://www.encodeproject.org/files/ENCFF765OEN/@@download/ENCFF765OEN.bigBed GRCh38 released low read depth, mild to moderate bottlenecking ENCFF667FTY bed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF616VIZ, ENCFF630HZQ, ENCFF648YPN 661587 ENCODE Processing Pipeline 8718f828e8412a7d80913fde174968e1 https://www.encodeproject.org/files/ENCFF667FTY/@@download/ENCFF667FTY.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF593EZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF667FTY 1286633 ENCODE Processing Pipeline bfd1b8a0da89b9a8253aead7756f7f0b https://www.encodeproject.org/files/ENCFF593EZZ/@@download/ENCFF593EZZ.bigBed GRCh38 released low read depth, mild to moderate bottlenecking ENCFF495PWL bed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF616VIZ, ENCFF630HZQ, ENCFF648YPN 750675 ENCODE Processing Pipeline 548337c64f783f2a9717de220c5df9e3 https://www.encodeproject.org/files/ENCFF495PWL/@@download/ENCFF495PWL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF218CKD bigBed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF495PWL 1420497 ENCODE Processing Pipeline 9bb2198306567247f4ab5d8c654ec738 https://www.encodeproject.org/files/ENCFF218CKD/@@download/ENCFF218CKD.bigBed GRCh38 released low read depth, mild to moderate bottlenecking ENCFF049KIT bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF807MUK 3831132666 ENCODE Processing Pipeline 2e51b6980eb3d1f6ba5a2b829ff1b29a https://www.encodeproject.org/files/ENCFF049KIT/@@download/ENCFF049KIT.bam hg19 released low read depth, mild to moderate bottlenecking ENCFF312AHI bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF741BVE, ENCFF807MUK 3589122040 ENCODE Processing Pipeline 00b15d8b2570c0a44b1ead31bc1c6406 https://www.encodeproject.org/files/ENCFF312AHI/@@download/ENCFF312AHI.bam hg19 released low read depth, mild to moderate bottlenecking ENCFF969FVF bed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF225TLM, ENCFF640EFU, ENCFF938MOR 593012 ENCODE Processing Pipeline f04890d02a0249bd9f452aaf432cb5aa https://www.encodeproject.org/files/ENCFF969FVF/@@download/ENCFF969FVF.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF726VEK bed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF225TLM, ENCFF640EFU, ENCFF938MOR 702985 ENCODE Processing Pipeline 854d3dcf4854f6b4f25251cadf429439 https://www.encodeproject.org/files/ENCFF726VEK/@@download/ENCFF726VEK.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF453PDN bigBed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF726VEK 1370968 ENCODE Processing Pipeline 5acb0b121e640ef2b4a24fc39f52f39f https://www.encodeproject.org/files/ENCFF453PDN/@@download/ENCFF453PDN.bigBed hg19 released low read depth, mild to moderate bottlenecking ENCFF088INN bigBed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF969FVF 1212404 ENCODE Processing Pipeline c0cb1e2709a26843714fa79c9ca3ee47 https://www.encodeproject.org/files/ENCFF088INN/@@download/ENCFF088INN.bigBed hg19 released low read depth, mild to moderate bottlenecking ENCFF870DTP bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF807MUK 866742514 ENCODE Processing Pipeline 6cbcf28499e8887f7fbc942f4b3d19c2 https://www.encodeproject.org/files/ENCFF870DTP/@@download/ENCFF870DTP.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF500UBO bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF807MUK 989900167 ENCODE Processing Pipeline fde74b59b8606a0d7bf1a58a043cd2ce https://www.encodeproject.org/files/ENCFF500UBO/@@download/ENCFF500UBO.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF064VGD bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 5639860 ENCODE Processing Pipeline d534856608d38b0c72cfd9c58e5d0cdd https://www.encodeproject.org/files/ENCFF064VGD/@@download/ENCFF064VGD.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF696VJM bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4522787 ENCODE Processing Pipeline cc61c87b1e26076a815a2c76000811a3 https://www.encodeproject.org/files/ENCFF696VJM/@@download/ENCFF696VJM.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF684XYC bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 4028977 ENCODE Processing Pipeline b50b0499a6149391e0bdc2075424e04e https://www.encodeproject.org/files/ENCFF684XYC/@@download/ENCFF684XYC.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF319JBZ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF696VJM 10858722 ENCODE Processing Pipeline 91b7c1d0ea0620e20dd62e5c533c61d3 https://www.encodeproject.org/files/ENCFF319JBZ/@@download/ENCFF319JBZ.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF642XXB bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF684XYC 10394950 ENCODE Processing Pipeline 682da4b598b562a5bd6bf1e5dfcdd408 https://www.encodeproject.org/files/ENCFF642XXB/@@download/ENCFF642XXB.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF137UDJ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF064VGD 11484454 ENCODE Processing Pipeline abc8d1d2d8f4bf5185fd1713a76bb90a https://www.encodeproject.org/files/ENCFF137UDJ/@@download/ENCFF137UDJ.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF299VKC bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF064VGD, ENCFF684XYC, ENCFF696VJM 51605 ENCODE Processing Pipeline 5678deb318097f136c5332c2e6977c41 https://www.encodeproject.org/files/ENCFF299VKC/@@download/ENCFF299VKC.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF348FWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF299VKC 140267 ENCODE Processing Pipeline 8e3d921a06343aa6c5fb4d3aaf13c7a5 https://www.encodeproject.org/files/ENCFF348FWJ/@@download/ENCFF348FWJ.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF215YWS bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF064VGD, ENCFF684XYC, ENCFF696VJM 68608 ENCODE Processing Pipeline 8ed3e2fdd452d687250b30c3559dcba6 https://www.encodeproject.org/files/ENCFF215YWS/@@download/ENCFF215YWS.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF335LXU bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF215YWS 163982 ENCODE Processing Pipeline 83ef05900437c9a6e2e23202f31ebe28 https://www.encodeproject.org/files/ENCFF335LXU/@@download/ENCFF335LXU.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002EBS fastq reads ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 733823818 Michael Snyder, Stanford b864cd40a8e69620f6d08d3880365f38 SRA:SRR5112146 https://www.encodeproject.org/files/ENCFF002EBS/@@download/ENCFF002EBS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002ECX fastq reads ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 791172131 Michael Snyder, Stanford 754d21b787c120ff70c37aab896a51d9 SRA:SRR5112145 https://www.encodeproject.org/files/ENCFF002ECX/@@download/ENCFF002ECX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF249XQG bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF807MUK 690113223 ENCODE Processing Pipeline 734f6a6b68d7dccb99e676330b7bbb2a https://www.encodeproject.org/files/ENCFF249XQG/@@download/ENCFF249XQG.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF821WKC bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF807MUK 518307101 ENCODE Processing Pipeline 63e1ac78539676d08c877be7c0d26810 https://www.encodeproject.org/files/ENCFF821WKC/@@download/ENCFF821WKC.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF575BDK bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 440233613 ENCODE Processing Pipeline ffd6cc03ee32e4ffed52cdc9d41ed40f https://www.encodeproject.org/files/ENCFF575BDK/@@download/ENCFF575BDK.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF590FPG bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 443780504 ENCODE Processing Pipeline 4e61773dd0bfcd55a92fddb54e1e1e55 https://www.encodeproject.org/files/ENCFF590FPG/@@download/ENCFF590FPG.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF683TWU bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 868962212 ENCODE Processing Pipeline ee7f276970d9379c211676722fa456a4 https://www.encodeproject.org/files/ENCFF683TWU/@@download/ENCFF683TWU.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF695WAT bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 320586377 ENCODE Processing Pipeline 98e144a6f3a0e2417688613fc7818713 https://www.encodeproject.org/files/ENCFF695WAT/@@download/ENCFF695WAT.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF784YSY bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 829211905 ENCODE Processing Pipeline 0fb2163dd35bc38565a3551ea5b04511 https://www.encodeproject.org/files/ENCFF784YSY/@@download/ENCFF784YSY.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF154ART bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 380692452 ENCODE Processing Pipeline 615c28a81ed4e3db0c25c345149507c4 https://www.encodeproject.org/files/ENCFF154ART/@@download/ENCFF154ART.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF285WIV bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 4157810 ENCODE Processing Pipeline 70fbdb467a6aa7901cd651f144f87f47 https://www.encodeproject.org/files/ENCFF285WIV/@@download/ENCFF285WIV.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF431SLO bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4659702 ENCODE Processing Pipeline 447f5abf22caeb918000542e52d323e8 https://www.encodeproject.org/files/ENCFF431SLO/@@download/ENCFF431SLO.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF214BKN bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 5853090 ENCODE Processing Pipeline aec03a0caf2cd44a6de34e975cd86a6a https://www.encodeproject.org/files/ENCFF214BKN/@@download/ENCFF214BKN.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF955TWQ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF285WIV 10693672 ENCODE Processing Pipeline 39a8e45d28d5eb680e68abe48388c22c https://www.encodeproject.org/files/ENCFF955TWQ/@@download/ENCFF955TWQ.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF175IVP bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF214BKN 11518622 ENCODE Processing Pipeline 2f9ddc8b022da259ad91df9a2eedac55 https://www.encodeproject.org/files/ENCFF175IVP/@@download/ENCFF175IVP.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF210EWK bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF431SLO 10969771 ENCODE Processing Pipeline 34c7885ef04531180a3d619284c6c84d https://www.encodeproject.org/files/ENCFF210EWK/@@download/ENCFF210EWK.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF295HEG bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF643CGH 869862823 ENCODE Processing Pipeline 7f9d770a8362b83b1d51f3d294417932 https://www.encodeproject.org/files/ENCFF295HEG/@@download/ENCFF295HEG.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF136YJS bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF643CGH 994517683 ENCODE Processing Pipeline 11b54086c0a7add4cfdcc83b72f8dfec https://www.encodeproject.org/files/ENCFF136YJS/@@download/ENCFF136YJS.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF809AHN bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF643CGH 519166515 ENCODE Processing Pipeline 98440f69f5a45ac56b440a74dbe66bd2 https://www.encodeproject.org/files/ENCFF809AHN/@@download/ENCFF809AHN.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF110LOM bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF643CGH 690533915 ENCODE Processing Pipeline e9927a8b1f828d7af4e50a9ae986a629 https://www.encodeproject.org/files/ENCFF110LOM/@@download/ENCFF110LOM.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF695NGH bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 553117647 ENCODE Processing Pipeline c38cf1281aea170e4c22b19db49df6ed https://www.encodeproject.org/files/ENCFF695NGH/@@download/ENCFF695NGH.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF980YFO bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 436129833 ENCODE Processing Pipeline 02b343b0ccc49da7ec87776bfe39bf33 https://www.encodeproject.org/files/ENCFF980YFO/@@download/ENCFF980YFO.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF117JYI bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 1029146746 ENCODE Processing Pipeline 89f9ee549fb720c6f2568f6b33828459 https://www.encodeproject.org/files/ENCFF117JYI/@@download/ENCFF117JYI.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF541UDJ bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 390479935 ENCODE Processing Pipeline 57f8a7beff1df4f08b2be60dd87e96bc https://www.encodeproject.org/files/ENCFF541UDJ/@@download/ENCFF541UDJ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002HBZ bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 335475097 ENCODE Processing Pipeline 91ca183f65f6848130d5db90532b3ee9 https://www.encodeproject.org/files/ENCFF002HBZ/@@download/ENCFF002HBZ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF779ODE bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 784603583 ENCODE Processing Pipeline 550eb0980f25c032fba11eb9d4b30382 https://www.encodeproject.org/files/ENCFF779ODE/@@download/ENCFF779ODE.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF439XLJ bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 4036442 ENCODE Processing Pipeline 88607fe3ad9044771032b934cd95bc98 https://www.encodeproject.org/files/ENCFF439XLJ/@@download/ENCFF439XLJ.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF806LSD bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF439XLJ 10389350 ENCODE Processing Pipeline 5838fa945e0e01f797fe67aa9d7bc53f https://www.encodeproject.org/files/ENCFF806LSD/@@download/ENCFF806LSD.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF500JAL bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF, ENCFF419RSJ, ENCFF439XLJ, ENCFF879ILK 57694 ENCODE Processing Pipeline 9efd4b55f321f49a6c85870e3a785e20 https://www.encodeproject.org/files/ENCFF500JAL/@@download/ENCFF500JAL.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF879ILK bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 4526263 ENCODE Processing Pipeline 55aad9e83adf7e57ff9937443628cdd0 https://www.encodeproject.org/files/ENCFF879ILK/@@download/ENCFF879ILK.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF254XZF bed narrowPeak peaks and background as input for IDR ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 5629234 ENCODE Processing Pipeline 0ca9937df41416e330d7c253ec980ebd https://www.encodeproject.org/files/ENCFF254XZF/@@download/ENCFF254XZF.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF045RMS bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF500JAL 174767 ENCODE Processing Pipeline 55e1eca0fcdf8be1299f60a344f8af80 https://www.encodeproject.org/files/ENCFF045RMS/@@download/ENCFF045RMS.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF761HOM bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF 11493656 ENCODE Processing Pipeline fd7a87e3667b0225f2f4fb8c5e9290fb https://www.encodeproject.org/files/ENCFF761HOM/@@download/ENCFF761HOM.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF402TSJ bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF, ENCFF419RSJ, ENCFF439XLJ, ENCFF879ILK 72629 ENCODE Processing Pipeline ed813bb8fc7ce63c94d3d81065878870 https://www.encodeproject.org/files/ENCFF402TSJ/@@download/ENCFF402TSJ.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF502DTZ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF879ILK 10861412 ENCODE Processing Pipeline c96731f8a1dfd84103a52d73e706117a https://www.encodeproject.org/files/ENCFF502DTZ/@@download/ENCFF502DTZ.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF218JDE bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF402TSJ 201131 ENCODE Processing Pipeline 95a504bc6a6bdf2f46437e807584a75b https://www.encodeproject.org/files/ENCFF218JDE/@@download/ENCFF218JDE.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF173YZN bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF214BKN, ENCFF285WIV, ENCFF431SLO 45228 ENCODE Processing Pipeline 8840c1c90fc7e0785f01ff5aa3f6d305 https://www.encodeproject.org/files/ENCFF173YZN/@@download/ENCFF173YZN.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF103IOJ bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF214BKN, ENCFF285WIV, ENCFF431SLO 58114 ENCODE Processing Pipeline c2b96d2f10d13460597b65d1177b6930 https://www.encodeproject.org/files/ENCFF103IOJ/@@download/ENCFF103IOJ.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF157SEX bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF173YZN 132057 ENCODE Processing Pipeline 9fb22149e70412d7b7f37f792db0a7b3 https://www.encodeproject.org/files/ENCFF157SEX/@@download/ENCFF157SEX.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF890XSD bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF103IOJ 150680 ENCODE Processing Pipeline 018b2e6b14faccd7e3cbf1dcd59e4bfc https://www.encodeproject.org/files/ENCFF890XSD/@@download/ENCFF890XSD.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking ENCFF002BFR fastq reads ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 1 50 single-ended 1453849505 Richard Myers, HAIB 8219972aa733b860009563baac3d08a4 SRA:SRR5331639 https://www.encodeproject.org/files/ENCFF002BFR/@@download/ENCFF002BFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released low read depth, borderline replicate concordance ENCFF697WPB fastq reads ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 1 50 single-ended 1170310914 Richard Myers, HAIB 6f44633b484df3fb934a90e5addfedb3 SRA:SRR5331638 https://www.encodeproject.org/files/ENCFF697WPB/@@download/ENCFF697WPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released low read depth, borderline replicate concordance ENCFF512IQR bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF697WPB, ENCFF807MUK 1312077047 ENCODE Processing Pipeline a454c2d9290037f99a530b5dbb5958c0 https://www.encodeproject.org/files/ENCFF512IQR/@@download/ENCFF512IQR.bam hg19 released low read depth, borderline replicate concordance ENCFF145KYA bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF807MUK 1576708037 ENCODE Processing Pipeline d64b3d7acc9559fe3cccf7d72d7ec73d https://www.encodeproject.org/files/ENCFF145KYA/@@download/ENCFF145KYA.bam hg19 released low read depth, borderline replicate concordance ENCFF958XTI bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF643CGH, ENCFF697WPB 1311284154 ENCODE Processing Pipeline b03f2290b9f771ba8b098b0c29150e8f https://www.encodeproject.org/files/ENCFF958XTI/@@download/ENCFF958XTI.bam GRCh38 released low read depth, borderline replicate concordance ENCFF633KZW bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF643CGH 1576502799 ENCODE Processing Pipeline ac8ebbec2ceddf063b10b3aaf20489c2 https://www.encodeproject.org/files/ENCFF633KZW/@@download/ENCFF633KZW.bam GRCh38 released low read depth, borderline replicate concordance ENCFF598WGZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF697WPB, ENCFF807MUK 979001374 ENCODE Processing Pipeline 2377052fae2ee81455e9268d7b6d479b https://www.encodeproject.org/files/ENCFF598WGZ/@@download/ENCFF598WGZ.bam hg19 released low read depth, borderline replicate concordance ENCFF963FTZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF643CGH, ENCFF697WPB 986701596 ENCODE Processing Pipeline fdb61e0b08fc7be114df7fbcf24bb8bd https://www.encodeproject.org/files/ENCFF963FTZ/@@download/ENCFF963FTZ.bam GRCh38 released low read depth, borderline replicate concordance ENCFF179SRP bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF643CGH 1158305361 ENCODE Processing Pipeline 51bd213bf48846b000540896829e1a06 https://www.encodeproject.org/files/ENCFF179SRP/@@download/ENCFF179SRP.bam GRCh38 released low read depth, borderline replicate concordance ENCFF199MDR bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF807MUK 1150353182 ENCODE Processing Pipeline ad9be9055a9f79a7daae6d0491c6123a https://www.encodeproject.org/files/ENCFF199MDR/@@download/ENCFF199MDR.bam hg19 released low read depth, borderline replicate concordance ENCFF717ZUE bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 767641642 ENCODE Processing Pipeline 936700e8f2b0ebd19006d1b8df0ef0c7 https://www.encodeproject.org/files/ENCFF717ZUE/@@download/ENCFF717ZUE.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF386EXB bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 507072030 ENCODE Processing Pipeline 2a733472e15c02c5362db7841a0399b7 https://www.encodeproject.org/files/ENCFF386EXB/@@download/ENCFF386EXB.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF717HVY bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 780223217 ENCODE Processing Pipeline 2bec9e378b248c02d17e7235854dac8b https://www.encodeproject.org/files/ENCFF717HVY/@@download/ENCFF717HVY.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF359EOF bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 980179428 ENCODE Processing Pipeline c314654ade1885316eef028391df28d2 https://www.encodeproject.org/files/ENCFF359EOF/@@download/ENCFF359EOF.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF789EFZ bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 531781718 ENCODE Processing Pipeline 894b6dbc48dfeac7bb15dd1dfd3e269b https://www.encodeproject.org/files/ENCFF789EFZ/@@download/ENCFF789EFZ.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF436YJO bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 827580109 ENCODE Processing Pipeline 66d2b2e5f7237ad27c998b6d4d4b7a42 https://www.encodeproject.org/files/ENCFF436YJO/@@download/ENCFF436YJO.bigWig GRCh38 released low read depth, borderline replicate concordance ENCFF078SOE bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 5208687 ENCODE Processing Pipeline 2293c9c9d7f2bcd77c62ef6d5d7f285b https://www.encodeproject.org/files/ENCFF078SOE/@@download/ENCFF078SOE.bed.gz GRCh38 released low read depth, borderline replicate concordance ENCFF043AHC bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 5583086 ENCODE Processing Pipeline ab1002a4e7ee46746e3a73b51162598c https://www.encodeproject.org/files/ENCFF043AHC/@@download/ENCFF043AHC.bed.gz GRCh38 released low read depth, borderline replicate concordance ENCFF017GHB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF043AHC 13427174 ENCODE Processing Pipeline bd7303dd724114c57147146d89c4ef99 https://www.encodeproject.org/files/ENCFF017GHB/@@download/ENCFF017GHB.bigBed GRCh38 released low read depth, borderline replicate concordance ENCFF957SDB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF078SOE 11268471 ENCODE Processing Pipeline a8e98b68226f38232087fb56cc1e2473 https://www.encodeproject.org/files/ENCFF957SDB/@@download/ENCFF957SDB.bigBed GRCh38 released low read depth, borderline replicate concordance ENCFF938YLS bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 6275342 ENCODE Processing Pipeline 09cfe5e49e9aaf2ca574d52fdd0e76a9 https://www.encodeproject.org/files/ENCFF938YLS/@@download/ENCFF938YLS.bed.gz GRCh38 released low read depth, borderline replicate concordance ENCFF334VIL bigBed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF871LZM 277929 ENCODE Processing Pipeline 5563c269fcc4d3eb08893f461e7ab32e https://www.encodeproject.org/files/ENCFF334VIL/@@download/ENCFF334VIL.bigBed GRCh38 released low read depth, borderline replicate concordance ENCFF887EVV bed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF043AHC, ENCFF078SOE, ENCFF419RSJ, ENCFF938YLS 99422 ENCODE Processing Pipeline 91f350719c5546757d79d3d69ca54949 https://www.encodeproject.org/files/ENCFF887EVV/@@download/ENCFF887EVV.bed.gz GRCh38 released low read depth, borderline replicate concordance ENCFF309HQG bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF938YLS 13528253 ENCODE Processing Pipeline 2431cc53bfb6051194b613bef8fd6ffd https://www.encodeproject.org/files/ENCFF309HQG/@@download/ENCFF309HQG.bigBed GRCh38 released low read depth, borderline replicate concordance ENCFF781QRT bigBed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF887EVV 242062 ENCODE Processing Pipeline d0eb598d493d2576395f44b894e45971 https://www.encodeproject.org/files/ENCFF781QRT/@@download/ENCFF781QRT.bigBed GRCh38 released low read depth, borderline replicate concordance ENCFF871LZM bed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF043AHC, ENCFF078SOE, ENCFF419RSJ, ENCFF938YLS 122416 ENCODE Processing Pipeline 18c5363d23846665ae270bf20fd17ce2 https://www.encodeproject.org/files/ENCFF871LZM/@@download/ENCFF871LZM.bed.gz GRCh38 released low read depth, borderline replicate concordance ENCFF871XDX bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 707682897 ENCODE Processing Pipeline 99434c281ecf0f108b4de4f7a74beb65 https://www.encodeproject.org/files/ENCFF871XDX/@@download/ENCFF871XDX.bigWig hg19 released low read depth, borderline replicate concordance ENCFF107OLX bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 773932450 ENCODE Processing Pipeline 757497ade4f01586a0bc875ccce5464e https://www.encodeproject.org/files/ENCFF107OLX/@@download/ENCFF107OLX.bigWig hg19 released low read depth, borderline replicate concordance ENCFF294NTH bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 535915572 ENCODE Processing Pipeline e9514ae20d620e5c8b845b892efb2e4e https://www.encodeproject.org/files/ENCFF294NTH/@@download/ENCFF294NTH.bigWig hg19 released low read depth, borderline replicate concordance ENCFF362SVS bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 845961814 ENCODE Processing Pipeline 02adb1103b54a4e3160014ff7bf1d18b https://www.encodeproject.org/files/ENCFF362SVS/@@download/ENCFF362SVS.bigWig hg19 released low read depth, borderline replicate concordance ENCFF496ZST bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 666385717 ENCODE Processing Pipeline fc71eb364df28e3d2b7da3055b25d29b https://www.encodeproject.org/files/ENCFF496ZST/@@download/ENCFF496ZST.bigWig hg19 released low read depth, borderline replicate concordance ENCFF168RYI bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 5497898 ENCODE Processing Pipeline 63382d019e0fde4f49a5993034e60f45 https://www.encodeproject.org/files/ENCFF168RYI/@@download/ENCFF168RYI.bed.gz hg19 released low read depth, borderline replicate concordance ENCFF634MHG bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF025MTA 13428389 ENCODE Processing Pipeline 5b713dc709f1bea21f0d8fee90c34a2a https://www.encodeproject.org/files/ENCFF634MHG/@@download/ENCFF634MHG.bigBed hg19 released low read depth, borderline replicate concordance ENCFF364KPB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF500LLP 13535243 ENCODE Processing Pipeline 6b2ba48fecbb02f1ca12f9e192ae6852 https://www.encodeproject.org/files/ENCFF364KPB/@@download/ENCFF364KPB.bigBed hg19 released low read depth, borderline replicate concordance ENCFF922UWO bed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF025MTA, ENCFF168RYI, ENCFF500LLP 99146 ENCODE Processing Pipeline 0c72aef876eaf319f80ae883f65aff84 https://www.encodeproject.org/files/ENCFF922UWO/@@download/ENCFF922UWO.bed.gz hg19 released low read depth, borderline replicate concordance ENCFF378HXE bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 499787136 ENCODE Processing Pipeline bdf72bea22d95bd246c5c524c82faee3 https://www.encodeproject.org/files/ENCFF378HXE/@@download/ENCFF378HXE.bigWig hg19 released low read depth, borderline replicate concordance ENCFF733CHK bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF168RYI 11325434 ENCODE Processing Pipeline fd40c55fe77ca7000322916fd94856c7 https://www.encodeproject.org/files/ENCFF733CHK/@@download/ENCFF733CHK.bigBed hg19 released low read depth, borderline replicate concordance ENCFF468SZX bigBed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF922UWO 241271 ENCODE Processing Pipeline 468436635e672e00ff378b2d8cffb1d6 https://www.encodeproject.org/files/ENCFF468SZX/@@download/ENCFF468SZX.bigBed hg19 released low read depth, borderline replicate concordance ENCFF025MTA bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 5657686 ENCODE Processing Pipeline 1332477ed89d41eeebcef99f85c146c5 https://www.encodeproject.org/files/ENCFF025MTA/@@download/ENCFF025MTA.bed.gz hg19 released low read depth, borderline replicate concordance ENCFF500LLP bed narrowPeak peaks and background as input for IDR ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 6285494 ENCODE Processing Pipeline 3f89439fe4e35543d97ef489e957a713 https://www.encodeproject.org/files/ENCFF500LLP/@@download/ENCFF500LLP.bed.gz hg19 released low read depth, borderline replicate concordance ENCFF374HJR bed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF025MTA, ENCFF168RYI, ENCFF500LLP 117764 ENCODE Processing Pipeline aa3bef7e4e1504bc5d0fe6d1cb3b61b9 https://www.encodeproject.org/files/ENCFF374HJR/@@download/ENCFF374HJR.bed.gz hg19 released low read depth, borderline replicate concordance ENCFF442QLP bigBed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF374HJR 270892 ENCODE Processing Pipeline cdd650fbb4d400040ff172a6eeb31421 https://www.encodeproject.org/files/ENCFF442QLP/@@download/ENCFF442QLP.bigBed hg19 released low read depth, borderline replicate concordance ENCFF000VSB bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 382821027 Michael Snyder, Stanford a79378a70a030cc6cba7440bc080a4a1 https://www.encodeproject.org/files/ENCFF000VSB/@@download/ENCFF000VSB.bam hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VSC bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDW 2716029 Michael Snyder, Stanford 292f736d2635f75d988874a8ab7c1d80 https://www.encodeproject.org/files/ENCFF000VSC/@@download/ENCFF000VSC.bigBed hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VSD fastq reads ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 790098363 Michael Snyder, Stanford f70bab7785e2d39597ae042d8f9aedc5 https://www.encodeproject.org/files/ENCFF000VSD/@@download/ENCFF000VSD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VSF fastq reads ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1040326383 Michael Snyder, Stanford 382f0abd18ab5450e85a1306479c7090 https://www.encodeproject.org/files/ENCFF000VSF/@@download/ENCFF000VSF.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF000VSH bigWig signal ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 351921076 Michael Snyder, Stanford b72f28cefbca0136e10d5aa751f2fca4 https://www.encodeproject.org/files/ENCFF000VSH/@@download/ENCFF000VSH.bigWig hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VSI bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 493793960 Michael Snyder, Stanford 27d091541df2d037c36e043cbe7101c0 https://www.encodeproject.org/files/ENCFF000VSI/@@download/ENCFF000VSI.bam hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF001VDW bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1086634 Michael Snyder, Stanford 43496bc940997f5b2495c4789e88d0d1 https://www.encodeproject.org/files/ENCFF001VDW/@@download/ENCFF001VDW.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF002COK bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 326289 ENCODE Consortium Analysis Working Group 100a70ef09b8815c8809ed9b799cd078 https://www.encodeproject.org/files/ENCFF002COK/@@download/ENCFF002COK.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF415YVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COK 796639 ENCODE Consortium e74b4e06a8cdfb5dc509abe9f09d3e00 https://www.encodeproject.org/files/ENCFF415YVO/@@download/ENCFF415YVO.bigBed hg19 archived low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF024QRE bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF643CGH 464846566 ENCODE Processing Pipeline 5f5b0f493193c95d5f90f44029a074b5 https://www.encodeproject.org/files/ENCFF024QRE/@@download/ENCFF024QRE.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF387NFS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF643CGH 1038779995 ENCODE Processing Pipeline b3d294969b8cfa13471fb7dd19d42247 https://www.encodeproject.org/files/ENCFF387NFS/@@download/ENCFF387NFS.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF093TKD bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF643CGH 767743519 ENCODE Processing Pipeline 7812e6edb3e7570bc6f1afab36e7c82a https://www.encodeproject.org/files/ENCFF093TKD/@@download/ENCFF093TKD.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF435RCL bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF643CGH 679650658 ENCODE Processing Pipeline 6b11f70710d22af2b39d491dd36d4808 https://www.encodeproject.org/files/ENCFF435RCL/@@download/ENCFF435RCL.bam GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF093KIS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF807MUK 765647012 ENCODE Processing Pipeline 97fed7e00ba262ef7f250511063816db https://www.encodeproject.org/files/ENCFF093KIS/@@download/ENCFF093KIS.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF175DHS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF807MUK 1035509450 ENCODE Processing Pipeline 3eb9ed7714840cd5426a9b2e973ff2ea https://www.encodeproject.org/files/ENCFF175DHS/@@download/ENCFF175DHS.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF758YOO bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF807MUK 464403317 ENCODE Processing Pipeline 0a86a5781ebcc92b6f5fec282fc4dc98 https://www.encodeproject.org/files/ENCFF758YOO/@@download/ENCFF758YOO.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF899LXA bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF807MUK 677705359 ENCODE Processing Pipeline 6bdbd9a999606efce617dfabb2e03a51 https://www.encodeproject.org/files/ENCFF899LXA/@@download/ENCFF899LXA.bam hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF732OEE bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF909EYB 10191940 ENCODE Processing Pipeline 3205ee554833343783be2527821f2c55 https://www.encodeproject.org/files/ENCFF732OEE/@@download/ENCFF732OEE.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF911XJG bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 75891975 ENCODE Processing Pipeline 97ad1a10e04fd52de25d3670a99db8c4 https://www.encodeproject.org/files/ENCFF911XJG/@@download/ENCFF911XJG.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF445PLI bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 232760725 ENCODE Processing Pipeline 0f4745d4b48afa6a4c826dc945c8edd6 https://www.encodeproject.org/files/ENCFF445PLI/@@download/ENCFF445PLI.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF853SOB bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF354WUJ, ENCFF512QTF, ENCFF909EYB 407249 ENCODE Processing Pipeline d964abe4d5ff7ce20874db90631d395f https://www.encodeproject.org/files/ENCFF853SOB/@@download/ENCFF853SOB.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF354WUJ bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 4280947 ENCODE Processing Pipeline d8616dc3b56920001156e632fefd5187 https://www.encodeproject.org/files/ENCFF354WUJ/@@download/ENCFF354WUJ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF888ANG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF853SOB 844006 ENCODE Processing Pipeline 994eb5d8ebe5f7f2958bdac22918946d https://www.encodeproject.org/files/ENCFF888ANG/@@download/ENCFF888ANG.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF100DMN bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 195402083 ENCODE Processing Pipeline 22d2f0db04a8d59ad265a3b82fa9d282 https://www.encodeproject.org/files/ENCFF100DMN/@@download/ENCFF100DMN.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF462ARY bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 208362935 ENCODE Processing Pipeline 362dd4d9e96ef4882bc33c8fafa15249 https://www.encodeproject.org/files/ENCFF462ARY/@@download/ENCFF462ARY.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF329MOK bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 164795940 ENCODE Processing Pipeline 741eec445d1ecc99279b26863eb0fc15 https://www.encodeproject.org/files/ENCFF329MOK/@@download/ENCFF329MOK.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF355HAQ bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 427978818 ENCODE Processing Pipeline 88a26c00ac3effaabfeb6f4058d6343a https://www.encodeproject.org/files/ENCFF355HAQ/@@download/ENCFF355HAQ.bigWig hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF909EYB bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 4529276 ENCODE Processing Pipeline 6afa95a3f0616f7314b161ca4616b275 https://www.encodeproject.org/files/ENCFF909EYB/@@download/ENCFF909EYB.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF512QTF bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 5161143 ENCODE Processing Pipeline 9af0cb5bfdff0a15952d6fd81211089f https://www.encodeproject.org/files/ENCFF512QTF/@@download/ENCFF512QTF.bed.gz hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF808LXZ bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF354WUJ 10145374 ENCODE Processing Pipeline 8557151739bd2e8ea03d224e663fd2a6 https://www.encodeproject.org/files/ENCFF808LXZ/@@download/ENCFF808LXZ.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF002SXK bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF512QTF 10975598 ENCODE Processing Pipeline 2d26f00dc6f674c44151cf4189198209 https://www.encodeproject.org/files/ENCFF002SXK/@@download/ENCFF002SXK.bigBed hg19 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF341JBF bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 164821693 ENCODE Processing Pipeline 0aad3b97d4dbfb76c68de441f81e0b08 https://www.encodeproject.org/files/ENCFF341JBF/@@download/ENCFF341JBF.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF945XXY bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 432382865 ENCODE Processing Pipeline e4aaf8acffcbe770084c73d238801b6e https://www.encodeproject.org/files/ENCFF945XXY/@@download/ENCFF945XXY.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF622HGF bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF084OAG, ENCFF419RSJ, ENCFF456YSD, ENCFF986ZCP 398658 ENCODE Processing Pipeline cd4d43710a7f1d732ab37cb220ac1e27 https://www.encodeproject.org/files/ENCFF622HGF/@@download/ENCFF622HGF.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF320OFS bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 195487466 ENCODE Processing Pipeline 147574aa55dad81a3acb99b3ffe8a4dd https://www.encodeproject.org/files/ENCFF320OFS/@@download/ENCFF320OFS.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF121IUM bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 210468661 ENCODE Processing Pipeline 5b5b7697e4975f46202fa2b77d16661a https://www.encodeproject.org/files/ENCFF121IUM/@@download/ENCFF121IUM.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF986ZCP bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 4506396 ENCODE Processing Pipeline 66551f691d08feacfec8ef02fffa9afa https://www.encodeproject.org/files/ENCFF986ZCP/@@download/ENCFF986ZCP.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF456YSD bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 5116513 ENCODE Processing Pipeline eff12720bfcac7c2b17952eb7bc8489e https://www.encodeproject.org/files/ENCFF456YSD/@@download/ENCFF456YSD.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF079XPX bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF986ZCP 10163067 ENCODE Processing Pipeline 024ac75168ac075fcf90a5d0c47c0e04 https://www.encodeproject.org/files/ENCFF079XPX/@@download/ENCFF079XPX.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF094NMD bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 75924943 ENCODE Processing Pipeline ed9774bf51f51e35526df36e89e7bf99 https://www.encodeproject.org/files/ENCFF094NMD/@@download/ENCFF094NMD.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF937OII bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 234952754 ENCODE Processing Pipeline 3fd12aece69abbb3d94334222798eb78 https://www.encodeproject.org/files/ENCFF937OII/@@download/ENCFF937OII.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF538MHK bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF084OAG 10141069 ENCODE Processing Pipeline 5326b9414f019662de882ea27a62a210 https://www.encodeproject.org/files/ENCFF538MHK/@@download/ENCFF538MHK.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF084OAG bed narrowPeak peaks and background as input for IDR ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 4280098 ENCODE Processing Pipeline 9d49c29b2fa0740c0a717c6fdd185b34 https://www.encodeproject.org/files/ENCFF084OAG/@@download/ENCFF084OAG.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF133BAV bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF456YSD 10921291 ENCODE Processing Pipeline 4b7672de673cbc852909da4bdf0841ea https://www.encodeproject.org/files/ENCFF133BAV/@@download/ENCFF133BAV.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF533FLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF622HGF 833504 ENCODE Processing Pipeline b28828444544a1c0e7a7a12911e40d6f https://www.encodeproject.org/files/ENCFF533FLF/@@download/ENCFF533FLF.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance duplicate lane review, biological replicates with identical biosample ENCFF100FQP fastq reads ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 1 75 single-ended 1631972157 Bradley Bernstein, Broad f35df925d6d5abcdc4b072bfc10e6905 SRA:SRR5832681 https://www.encodeproject.org/files/ENCFF100FQP/@@download/ENCFF100FQP.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released borderline replicate concordance ENCFF965ZWE fastq reads ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 1 76 single-ended 1272394178 Bradley Bernstein, Broad 0ecc62a9fd8ccb8ff176c2d1e61e6c0b SRA:SRR5832680 https://www.encodeproject.org/files/ENCFF965ZWE/@@download/ENCFF965ZWE.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released borderline replicate concordance ENCFF679PJD bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF643CGH, ENCFF965ZWE 1550714279 ENCODE Processing Pipeline b94de8929e12ab94484f10c002bfc610 https://www.encodeproject.org/files/ENCFF679PJD/@@download/ENCFF679PJD.bam GRCh38 released borderline replicate concordance ENCFF108NQY bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF643CGH 1949529603 ENCODE Processing Pipeline 539e775b54dceb2d30b2f37f573bc377 https://www.encodeproject.org/files/ENCFF108NQY/@@download/ENCFF108NQY.bam GRCh38 released borderline replicate concordance ENCFF096UHS bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF807MUK, ENCFF965ZWE 1547254646 ENCODE Processing Pipeline f93972319ae5c835dbd39c14f75eb47a https://www.encodeproject.org/files/ENCFF096UHS/@@download/ENCFF096UHS.bam hg19 released borderline replicate concordance ENCFF480CIF bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF807MUK 1946536198 ENCODE Processing Pipeline 89781cfc008691720e0a1ecdf33131ba https://www.encodeproject.org/files/ENCFF480CIF/@@download/ENCFF480CIF.bam hg19 released borderline replicate concordance ENCFF122ZQQ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF643CGH, ENCFF965ZWE 1222953700 ENCODE Processing Pipeline 6617e1d49bb15bd9977851607e94771c https://www.encodeproject.org/files/ENCFF122ZQQ/@@download/ENCFF122ZQQ.bam GRCh38 released borderline replicate concordance ENCFF736OGN bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF807MUK, ENCFF965ZWE 1219914247 ENCODE Processing Pipeline dfa22dc33fd495303e71327590f07b24 https://www.encodeproject.org/files/ENCFF736OGN/@@download/ENCFF736OGN.bam hg19 released borderline replicate concordance ENCFF035LOI bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF807MUK 1515046762 ENCODE Processing Pipeline 444eb0c4359be4c60bc34b8887b5b53b https://www.encodeproject.org/files/ENCFF035LOI/@@download/ENCFF035LOI.bam hg19 released borderline replicate concordance ENCFF761QRJ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF643CGH 1519589168 ENCODE Processing Pipeline 8524cb5e0805bdf97c95a3771064d062 https://www.encodeproject.org/files/ENCFF761QRJ/@@download/ENCFF761QRJ.bam GRCh38 released borderline replicate concordance ENCFF800BRD bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1004101148 ENCODE Processing Pipeline 765200d551c4ac7994aa832a78f66d61 https://www.encodeproject.org/files/ENCFF800BRD/@@download/ENCFF800BRD.bigWig GRCh38 released borderline replicate concordance ENCFF174FFD bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 1093326813 ENCODE Processing Pipeline 6a11443d1d262a7130cc1a17bc8f218e https://www.encodeproject.org/files/ENCFF174FFD/@@download/ENCFF174FFD.bigWig GRCh38 released borderline replicate concordance ENCFF573ZOP bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 976274606 ENCODE Processing Pipeline 2e659829f2a8780477f5c8844c4ed42e https://www.encodeproject.org/files/ENCFF573ZOP/@@download/ENCFF573ZOP.bigWig hg19 released borderline replicate concordance ENCFF684ZBQ bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 962775142 ENCODE Processing Pipeline 34e38fabf111c86fd4490d6237142c51 https://www.encodeproject.org/files/ENCFF684ZBQ/@@download/ENCFF684ZBQ.bigWig hg19 released borderline replicate concordance ENCFF447FSL bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1067239059 ENCODE Processing Pipeline 3f9e5553bc2b0ca2dc9bf91b5a3b77c0 https://www.encodeproject.org/files/ENCFF447FSL/@@download/ENCFF447FSL.bigWig GRCh38 released borderline replicate concordance ENCFF010WEH bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 981124668 ENCODE Processing Pipeline 2b5ce24b87097df64a29883674ea08b7 https://www.encodeproject.org/files/ENCFF010WEH/@@download/ENCFF010WEH.bigWig hg19 released borderline replicate concordance ENCFF388XWW bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 1129280356 ENCODE Processing Pipeline 69ed35404707fbd4b3d6cf6da346fec7 https://www.encodeproject.org/files/ENCFF388XWW/@@download/ENCFF388XWW.bigWig hg19 released borderline replicate concordance ENCFF135SLK bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 910736449 ENCODE Processing Pipeline 33a0d673a5b821825e50ed633d9e0ef8 https://www.encodeproject.org/files/ENCFF135SLK/@@download/ENCFF135SLK.bigWig hg19 released borderline replicate concordance ENCFF565KNB bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 971569538 ENCODE Processing Pipeline dd62f76568380760892dcd2258cee4a3 https://www.encodeproject.org/files/ENCFF565KNB/@@download/ENCFF565KNB.bigWig GRCh38 released borderline replicate concordance ENCFF839ZTV bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 864878852 ENCODE Processing Pipeline 1bff2be7f52cab1c244dfa4a0aba1355 https://www.encodeproject.org/files/ENCFF839ZTV/@@download/ENCFF839ZTV.bigWig GRCh38 released borderline replicate concordance ENCFF040IUQ bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 6543456 ENCODE Processing Pipeline 971a8b923966697255885d2b1e173751 https://www.encodeproject.org/files/ENCFF040IUQ/@@download/ENCFF040IUQ.bed.gz hg19 released borderline replicate concordance ENCFF783OQX bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF385GVM 11538828 ENCODE Processing Pipeline f1260a72d48c18d1c335cfae1c1959b2 https://www.encodeproject.org/files/ENCFF783OQX/@@download/ENCFF783OQX.bigBed hg19 released borderline replicate concordance ENCFF758SHJ bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF040IUQ 13532147 ENCODE Processing Pipeline 840fb4c0abcdfa66fe6c7cd0b1fe3f15 https://www.encodeproject.org/files/ENCFF758SHJ/@@download/ENCFF758SHJ.bigBed hg19 released borderline replicate concordance ENCFF252WSP bigBed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF355CKA 90377 ENCODE Processing Pipeline 4c2edf9833b790714ddb78f4c5fb6f59 https://www.encodeproject.org/files/ENCFF252WSP/@@download/ENCFF252WSP.bigBed GRCh38 released borderline replicate concordance ENCFF799KZP bed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035ZHH, ENCFF419RSJ, ENCFF929EYT, ENCFF972IEQ 8931 ENCODE Processing Pipeline 44ff40f3cbbb5942096b3bacc95ae072 https://www.encodeproject.org/files/ENCFF799KZP/@@download/ENCFF799KZP.bed.gz GRCh38 released borderline replicate concordance ENCFF387DEN bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 5785437 ENCODE Processing Pipeline 7426178d9d90a5cffc9096eb11cdb189 https://www.encodeproject.org/files/ENCFF387DEN/@@download/ENCFF387DEN.bed.gz hg19 released borderline replicate concordance ENCFF929EYT bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 5591359 ENCODE Processing Pipeline 231b960f29a265378a68b595abdcf109 https://www.encodeproject.org/files/ENCFF929EYT/@@download/ENCFF929EYT.bed.gz GRCh38 released borderline replicate concordance ENCFF063AIL bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF387DEN 13584588 ENCODE Processing Pipeline 0b71453ec62192493968ef1a968405d7 https://www.encodeproject.org/files/ENCFF063AIL/@@download/ENCFF063AIL.bigBed hg19 released borderline replicate concordance ENCFF948QKK bed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF040IUQ, ENCFF385GVM, ENCFF387DEN 5677 ENCODE Processing Pipeline 460b13a7706174d975939eb5429a1ec9 https://www.encodeproject.org/files/ENCFF948QKK/@@download/ENCFF948QKK.bed.gz hg19 released borderline replicate concordance ENCFF996RRT bed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF040IUQ, ENCFF385GVM, ENCFF387DEN 7786 ENCODE Processing Pipeline c0c13bfd576a47fb42d39c92e9b7f9ea https://www.encodeproject.org/files/ENCFF996RRT/@@download/ENCFF996RRT.bed.gz hg19 released borderline replicate concordance ENCFF919GIM bigBed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF996RRT 73978 ENCODE Processing Pipeline 0dff0ed26bc2e12f5dc5b2aa6b92c8ff https://www.encodeproject.org/files/ENCFF919GIM/@@download/ENCFF919GIM.bigBed hg19 released borderline replicate concordance ENCFF972IEQ bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 6354537 ENCODE Processing Pipeline a8e1283c9ee0e5363a34605d585a3893 https://www.encodeproject.org/files/ENCFF972IEQ/@@download/ENCFF972IEQ.bed.gz GRCh38 released borderline replicate concordance ENCFF815VBX bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035ZHH 11503016 ENCODE Processing Pipeline 8d5d3334e7a8d0845b2e6ff5149db5d8 https://www.encodeproject.org/files/ENCFF815VBX/@@download/ENCFF815VBX.bigBed GRCh38 released borderline replicate concordance ENCFF960KLA bigBed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF948QKK 94380 ENCODE Processing Pipeline ed5ad69b110ba85c84f340bbec1e86f2 https://www.encodeproject.org/files/ENCFF960KLA/@@download/ENCFF960KLA.bigBed hg19 released borderline replicate concordance ENCFF323SMQ bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1353114053 ENCODE Processing Pipeline f695aa5a5d9792c2b3fa87120568e26e https://www.encodeproject.org/files/ENCFF323SMQ/@@download/ENCFF323SMQ.bigWig GRCh38 released borderline replicate concordance ENCFF385GVM bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 5640136 ENCODE Processing Pipeline 258a05d2711185bbaddd422ce470a14e https://www.encodeproject.org/files/ENCFF385GVM/@@download/ENCFF385GVM.bed.gz hg19 released borderline replicate concordance ENCFF491KSG bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF972IEQ 11442554 ENCODE Processing Pipeline b338322e6c23f70a84006f5f9e7eced6 https://www.encodeproject.org/files/ENCFF491KSG/@@download/ENCFF491KSG.bigBed GRCh38 released borderline replicate concordance ENCFF777QJK bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 1358950907 ENCODE Processing Pipeline 738bd3c4c23d2cffda93815b96f71282 https://www.encodeproject.org/files/ENCFF777QJK/@@download/ENCFF777QJK.bigWig hg19 released borderline replicate concordance ENCFF035ZHH bed narrowPeak peaks and background as input for IDR ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 5448509 ENCODE Processing Pipeline e7ebdddc19305fb3e99ee14a948832ef https://www.encodeproject.org/files/ENCFF035ZHH/@@download/ENCFF035ZHH.bed.gz GRCh38 released borderline replicate concordance ENCFF548SFS bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF929EYT 11459307 ENCODE Processing Pipeline abf7e364faeb8901b77b22a1f37d5b04 https://www.encodeproject.org/files/ENCFF548SFS/@@download/ENCFF548SFS.bigBed GRCh38 released borderline replicate concordance ENCFF355CKA bed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035ZHH, ENCFF419RSJ, ENCFF929EYT, ENCFF972IEQ 6944 ENCODE Processing Pipeline 9298dc4c750503e92cb88121564ea563 https://www.encodeproject.org/files/ENCFF355CKA/@@download/ENCFF355CKA.bed.gz GRCh38 released borderline replicate concordance ENCFF423NOY bigBed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF799KZP 77287 ENCODE Processing Pipeline abf8b3d028fdc7d802441b9a64cca96e https://www.encodeproject.org/files/ENCFF423NOY/@@download/ENCFF423NOY.bigBed GRCh38 released borderline replicate concordance ENCFF002BFN fastq reads ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1282863699 Richard Myers, HAIB ee6f9786a4ae9cd0a50de53762bb013c SRA:SRR5338794 https://www.encodeproject.org/files/ENCFF002BFN/@@download/ENCFF002BFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFW/ released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF932ZZU fastq reads ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1739137009 Richard Myers, HAIB 9023b30e3662646bae0f20de2d06ce79 SRA:SRR5338795 https://www.encodeproject.org/files/ENCFF932ZZU/@@download/ENCFF932ZZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF971HFA bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF643CGH 1370741326 ENCODE Processing Pipeline 743ca8ed092877650b2a953b4a2d152a https://www.encodeproject.org/files/ENCFF971HFA/@@download/ENCFF971HFA.bam GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF698NSE bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF643CGH 1034909066 ENCODE Processing Pipeline 684e844609f75d596b0ab5991f6e55b5 https://www.encodeproject.org/files/ENCFF698NSE/@@download/ENCFF698NSE.bam GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF943VWM bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF932ZZU 1863381437 ENCODE Processing Pipeline 1ebcc5be503da497ca7cd6ba14f1ddb9 https://www.encodeproject.org/files/ENCFF943VWM/@@download/ENCFF943VWM.bam hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF171JQZ bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF932ZZU 1867199919 ENCODE Processing Pipeline 073ddcff1fef5a12c4545b6aabd5aefa https://www.encodeproject.org/files/ENCFF171JQZ/@@download/ENCFF171JQZ.bam GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF856LVF bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF807MUK 1368597559 ENCODE Processing Pipeline db23a026af45eefd63939d3bfd1a0222 https://www.encodeproject.org/files/ENCFF856LVF/@@download/ENCFF856LVF.bam hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF086LJZ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF807MUK 1030025425 ENCODE Processing Pipeline ff112d956ea46eecaf08405d17c4b815 https://www.encodeproject.org/files/ENCFF086LJZ/@@download/ENCFF086LJZ.bam hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF662NBQ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF932ZZU 1406049840 ENCODE Processing Pipeline 58aae4ae0e9080cbedb9451715d336ef https://www.encodeproject.org/files/ENCFF662NBQ/@@download/ENCFF662NBQ.bam GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF720HIA bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF932ZZU 1401673146 ENCODE Processing Pipeline 30efcdd96c494a1de71659e164c357b2 https://www.encodeproject.org/files/ENCFF720HIA/@@download/ENCFF720HIA.bam hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF874ZET bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 835071846 ENCODE Processing Pipeline 15f814c426cd1dd9c064adbc526f861e https://www.encodeproject.org/files/ENCFF874ZET/@@download/ENCFF874ZET.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF344SMC bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 658577731 ENCODE Processing Pipeline fb5618dcda3edfc126ac49b7c64bdcad https://www.encodeproject.org/files/ENCFF344SMC/@@download/ENCFF344SMC.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF811MTO bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 1070537373 ENCODE Processing Pipeline f36b612a8f266f28609dced1c442118b https://www.encodeproject.org/files/ENCFF811MTO/@@download/ENCFF811MTO.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF981SHX bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 656313155 ENCODE Processing Pipeline 3a399f9797784055795f8071f3e63a62 https://www.encodeproject.org/files/ENCFF981SHX/@@download/ENCFF981SHX.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF483RRV bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 547580121 ENCODE Processing Pipeline 9222b57fdaeac4e51eb0c3a6ffeac6bb https://www.encodeproject.org/files/ENCFF483RRV/@@download/ENCFF483RRV.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF861VZC bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 953986518 ENCODE Processing Pipeline 168c1e85dd7be5f4b197a8ba8ca2965a https://www.encodeproject.org/files/ENCFF861VZC/@@download/ENCFF861VZC.bigWig GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF486GLA bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF602ZVQ 10965195 ENCODE Processing Pipeline cc4ef549fc9b088c709c0cfbebf4a968 https://www.encodeproject.org/files/ENCFF486GLA/@@download/ENCFF486GLA.bigBed GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF726PZE bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016ZSU 11215357 ENCODE Processing Pipeline 0fea52afbe170187f2b5bafc9c9586a4 https://www.encodeproject.org/files/ENCFF726PZE/@@download/ENCFF726PZE.bigBed GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF697YQI bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF514DIZ 13634308 ENCODE Processing Pipeline 6a0b5af237494d1533142e3c9dd2471d https://www.encodeproject.org/files/ENCFF697YQI/@@download/ENCFF697YQI.bigBed GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF016ZSU bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 5719950 ENCODE Processing Pipeline d015cee85816b93b2975583e0722e49b https://www.encodeproject.org/files/ENCFF016ZSU/@@download/ENCFF016ZSU.bed.gz GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF602ZVQ bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 4858450 ENCODE Processing Pipeline 9e373ec32bbeb1f53fba4567f1b2ff32 https://www.encodeproject.org/files/ENCFF602ZVQ/@@download/ENCFF602ZVQ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF514DIZ bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 6221164 ENCODE Processing Pipeline caf3d4b3a3e58e3de161f28637c667d6 https://www.encodeproject.org/files/ENCFF514DIZ/@@download/ENCFF514DIZ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF555ECR bed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016ZSU, ENCFF419RSJ, ENCFF514DIZ, ENCFF602ZVQ 152503 ENCODE Processing Pipeline 64007b07ddad7c378f11c18336b5ebee https://www.encodeproject.org/files/ENCFF555ECR/@@download/ENCFF555ECR.bed.gz GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF360NHM bigBed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF555ECR 344029 ENCODE Processing Pipeline 2d60555aed6a070e6e04c8f22802262a https://www.encodeproject.org/files/ENCFF360NHM/@@download/ENCFF360NHM.bigBed GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF152RNE bed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016ZSU, ENCFF419RSJ, ENCFF514DIZ, ENCFF602ZVQ 180973 ENCODE Processing Pipeline 015284dbf41a9e9ef2baac67bc49e860 https://www.encodeproject.org/files/ENCFF152RNE/@@download/ENCFF152RNE.bed.gz GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF711EAY bigBed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF152RNE 386604 ENCODE Processing Pipeline d8498c24524a2e84c1909aed885f2ee6 https://www.encodeproject.org/files/ENCFF711EAY/@@download/ENCFF711EAY.bigBed GRCh38 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF238MQA bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 701734324 ENCODE Processing Pipeline b14ecc077c51a682c18ada1dd7cbe1cf https://www.encodeproject.org/files/ENCFF238MQA/@@download/ENCFF238MQA.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF776DVS bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 821683753 ENCODE Processing Pipeline abb00bf954decaef2f0d30867e494096 https://www.encodeproject.org/files/ENCFF776DVS/@@download/ENCFF776DVS.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF575CHF bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 664102822 ENCODE Processing Pipeline 361bd063df7d5d35bf68760a7f15ad2d https://www.encodeproject.org/files/ENCFF575CHF/@@download/ENCFF575CHF.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF675KLX bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 823843282 ENCODE Processing Pipeline cd67c10358ccf5445d43b44be110a293 https://www.encodeproject.org/files/ENCFF675KLX/@@download/ENCFF675KLX.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF965HNY bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 563769193 ENCODE Processing Pipeline e74a580878567b179c2195fc2e1c63a7 https://www.encodeproject.org/files/ENCFF965HNY/@@download/ENCFF965HNY.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF758RBF bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 970063366 ENCODE Processing Pipeline e582a8bb25c2b7dfa5110d1cf9f6b58c https://www.encodeproject.org/files/ENCFF758RBF/@@download/ENCFF758RBF.bigWig hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF508MRO bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 5612436 ENCODE Processing Pipeline 9873663b99886607e58e6da699e5d349 https://www.encodeproject.org/files/ENCFF508MRO/@@download/ENCFF508MRO.bed.gz hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF607MBL bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF988AWI 13616928 ENCODE Processing Pipeline fe54c2b6c96dfda5617816fcc0333263 https://www.encodeproject.org/files/ENCFF607MBL/@@download/ENCFF607MBL.bigBed hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF988AWI bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 6222053 ENCODE Processing Pipeline b4ce00040b0b3955fd0c12c05b64bac0 https://www.encodeproject.org/files/ENCFF988AWI/@@download/ENCFF988AWI.bed.gz hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF925ZGX bed narrowPeak peaks and background as input for IDR ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 4985334 ENCODE Processing Pipeline 977767272dab7b9267fce5f771334049 https://www.encodeproject.org/files/ENCFF925ZGX/@@download/ENCFF925ZGX.bed.gz hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF817AOQ bed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF508MRO, ENCFF925ZGX, ENCFF988AWI 151146 ENCODE Processing Pipeline d6f30f82bca591b0adba46bb845d147f https://www.encodeproject.org/files/ENCFF817AOQ/@@download/ENCFF817AOQ.bed.gz hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF658YKK bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF925ZGX 11011877 ENCODE Processing Pipeline 86477f4de5e9c7977e928ff75ba839a3 https://www.encodeproject.org/files/ENCFF658YKK/@@download/ENCFF658YKK.bigBed hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF946CVP bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF508MRO 11180708 ENCODE Processing Pipeline a4ca167eb67046da5c51057f020a6a5a https://www.encodeproject.org/files/ENCFF946CVP/@@download/ENCFF946CVP.bigBed hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF448TPQ bigBed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817AOQ 341895 ENCODE Processing Pipeline e9ece4c85cf5f09d27142a617b2a5f16 https://www.encodeproject.org/files/ENCFF448TPQ/@@download/ENCFF448TPQ.bigBed hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF305ICK bed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF508MRO, ENCFF925ZGX, ENCFF988AWI 177224 ENCODE Processing Pipeline a4d821726cb81b6e654150bb39ba9b05 https://www.encodeproject.org/files/ENCFF305ICK/@@download/ENCFF305ICK.bed.gz hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF116JVL bigBed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF305ICK 380278 ENCODE Processing Pipeline 810070e9f8834f396460797acc9ac1b4 https://www.encodeproject.org/files/ENCFF116JVL/@@download/ENCFF116JVL.bigBed hg19 released antibody characterized with exemption, low read depth, borderline replicate concordance ENCFF000NWW bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NXE 501637082 Richard Myers, HAIB 44c45079e73465a3d5ab9540d5b56028 https://www.encodeproject.org/files/ENCFF000NWW/@@download/ENCFF000NWW.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NWX bigBed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXK 72732 Richard Myers, HAIB 0d0ed8abda769af8b6e0261fbd19dec1 https://www.encodeproject.org/files/ENCFF000NWX/@@download/ENCFF000NWX.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NWY bigBed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXL 314508 Richard Myers, HAIB 326eff59fe8a771539063e5941330222 https://www.encodeproject.org/files/ENCFF000NWY/@@download/ENCFF000NWY.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NWZ bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NXJ 858294027 Richard Myers, HAIB b973ab4432f19057d95d5ae65e19d40f https://www.encodeproject.org/files/ENCFF000NWZ/@@download/ENCFF000NWZ.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NXB bigWig raw signal ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 3798343 Richard Myers, HAIB c2d596c454d9307376cad1d5da509dc2 https://www.encodeproject.org/files/ENCFF000NXB/@@download/ENCFF000NXB.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NXD bigWig raw signal ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 10133425 Richard Myers, HAIB 404ee81878b81dbe2b298a48f4f5e6e7 https://www.encodeproject.org/files/ENCFF000NXD/@@download/ENCFF000NXD.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NXE fastq reads ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 445880471 Richard Myers, HAIB c87a6e0d6c5e5c59946f985b0b398494 https://www.encodeproject.org/files/ENCFF000NXE/@@download/ENCFF000NXE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF000NXJ fastq reads ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 767402556 Richard Myers, HAIB 1df63db4f86c4f057041ff7a58f27240 https://www.encodeproject.org/files/ENCFF000NXJ/@@download/ENCFF000NXJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF001TXK bed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 15957 Richard Myers, HAIB 5fce143cd102115d65f5407c86b33fc1 https://www.encodeproject.org/files/ENCFF001TXK/@@download/ENCFF001TXK.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF001TXL bed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 138674 Richard Myers, HAIB cd955d73c911652b3355a89dc0b2edf6 https://www.encodeproject.org/files/ENCFF001TXL/@@download/ENCFF001TXL.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF002CHD bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 180187 ENCODE Consortium Analysis Working Group cc95db1f7a06b5a71c2aa393c3256bac https://www.encodeproject.org/files/ENCFF002CHD/@@download/ENCFF002CHD.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF635XDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHD 392697 ENCODE Consortium bae1eae00994a7ed14524a11c470f5f6 https://www.encodeproject.org/files/ENCFF635XDD/@@download/ENCFF635XDD.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF013EWV bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF643CGH 584631537 ENCODE Processing Pipeline ab5fd6be24168792c550a1b5ee9f2f5e https://www.encodeproject.org/files/ENCFF013EWV/@@download/ENCFF013EWV.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF191UHV bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF643CGH 266709769 ENCODE Processing Pipeline 46e097d33be62d58a10791ac36aab2f1 https://www.encodeproject.org/files/ENCFF191UHV/@@download/ENCFF191UHV.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF665BAJ bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF643CGH 562405034 ENCODE Processing Pipeline 786a29b8b53155de71b35fd531814693 https://www.encodeproject.org/files/ENCFF665BAJ/@@download/ENCFF665BAJ.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF575FBF bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF643CGH 1003429943 ENCODE Processing Pipeline fdb037703dc81094239158d8213b52ee https://www.encodeproject.org/files/ENCFF575FBF/@@download/ENCFF575FBF.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF161DMX bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF807MUK 583934443 ENCODE Processing Pipeline 78f5a2746bc2b93dc7ee9d76387db614 https://www.encodeproject.org/files/ENCFF161DMX/@@download/ENCFF161DMX.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF195HFC bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF807MUK 263852803 ENCODE Processing Pipeline c12a93f450e4d5bc04edca4ee50c8d70 https://www.encodeproject.org/files/ENCFF195HFC/@@download/ENCFF195HFC.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF810SZD bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF807MUK 1006168129 ENCODE Processing Pipeline 9b8fb9f65b40ed50480fe619187d2f27 https://www.encodeproject.org/files/ENCFF810SZD/@@download/ENCFF810SZD.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF840QLL bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF807MUK 556612043 ENCODE Processing Pipeline 06bc35d694950b40a0026bbcf830ecf7 https://www.encodeproject.org/files/ENCFF840QLL/@@download/ENCFF840QLL.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF415HRV bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 384751670 ENCODE Processing Pipeline cb3d7184b05213348baceef236cc5cae https://www.encodeproject.org/files/ENCFF415HRV/@@download/ENCFF415HRV.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF832IPZ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 307679673 ENCODE Processing Pipeline 4e9429437fdc1b90ad9ec8a9f5eb8e66 https://www.encodeproject.org/files/ENCFF832IPZ/@@download/ENCFF832IPZ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF291WBN bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 384039897 ENCODE Processing Pipeline 22023d19109a7507d2f43421024dc958 https://www.encodeproject.org/files/ENCFF291WBN/@@download/ENCFF291WBN.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF557ZWN bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 4767893 ENCODE Processing Pipeline d1fdba47e4a42621ce078275da07bbf3 https://www.encodeproject.org/files/ENCFF557ZWN/@@download/ENCFF557ZWN.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF492EEW bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 174977660 ENCODE Processing Pipeline 3ff939d304f06c9685b2291c39985fbf https://www.encodeproject.org/files/ENCFF492EEW/@@download/ENCFF492EEW.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF878VND bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF557ZWN 10938776 ENCODE Processing Pipeline 0fef616faff9af87b6d6e3c8738ddbe3 https://www.encodeproject.org/files/ENCFF878VND/@@download/ENCFF878VND.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF295QTX bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 467713078 ENCODE Processing Pipeline 05e1b3ec40e8e3c624c710cc89eb5910 https://www.encodeproject.org/files/ENCFF295QTX/@@download/ENCFF295QTX.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF872HOJ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 421741951 ENCODE Processing Pipeline ea8a8fbd9a927f99dca290b9929dd898 https://www.encodeproject.org/files/ENCFF872HOJ/@@download/ENCFF872HOJ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF186CJG bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 2726254 ENCODE Processing Pipeline 4886edeb62a7f3149c0785c7c2eb1d56 https://www.encodeproject.org/files/ENCFF186CJG/@@download/ENCFF186CJG.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF720VWD bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 4548047 ENCODE Processing Pipeline 0442b51e3fa82ecf791d0cf88ded3d27 https://www.encodeproject.org/files/ENCFF720VWD/@@download/ENCFF720VWD.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF080JZQ bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF720VWD 10589093 ENCODE Processing Pipeline 521007bb045027b26fc4b6d555dcee35 https://www.encodeproject.org/files/ENCFF080JZQ/@@download/ENCFF080JZQ.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF468GCV bed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF186CJG, ENCFF419RSJ, ENCFF557ZWN, ENCFF720VWD 74931 ENCODE Processing Pipeline cd77510e1caf417b2fc4da26fdfd844b https://www.encodeproject.org/files/ENCFF468GCV/@@download/ENCFF468GCV.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF845OMO bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF186CJG 5956764 ENCODE Processing Pipeline 97fef6c99e03e21989c34d9b02585b33 https://www.encodeproject.org/files/ENCFF845OMO/@@download/ENCFF845OMO.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF423TWT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468GCV 180461 ENCODE Processing Pipeline f4bc5f491c161542601d591f4cb9f46d https://www.encodeproject.org/files/ENCFF423TWT/@@download/ENCFF423TWT.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF830BRO bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF186CJG, ENCFF419RSJ, ENCFF557ZWN, ENCFF720VWD 208861 ENCODE Processing Pipeline 5cc3b67aced5510b82769d0c2f9f5cd8 https://www.encodeproject.org/files/ENCFF830BRO/@@download/ENCFF830BRO.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF191FWB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF830BRO 429143 ENCODE Processing Pipeline b028e6bfbe63f43778cd397191ed8711 https://www.encodeproject.org/files/ENCFF191FWB/@@download/ENCFF191FWB.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF828VAA bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 364522154 ENCODE Processing Pipeline 880af93a4d00aa7350bf0dd52844859f https://www.encodeproject.org/files/ENCFF828VAA/@@download/ENCFF828VAA.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF563GOS bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 175003805 ENCODE Processing Pipeline 9a2dceed6b2657a1ae1b62a9a76e1a6c https://www.encodeproject.org/files/ENCFF563GOS/@@download/ENCFF563GOS.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF484OTT bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 336343845 ENCODE Processing Pipeline a724e800ca0eefb542a89084d117c215 https://www.encodeproject.org/files/ENCFF484OTT/@@download/ENCFF484OTT.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF555ETY bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 468179785 ENCODE Processing Pipeline 64510466831c81d4324249c531fa7be8 https://www.encodeproject.org/files/ENCFF555ETY/@@download/ENCFF555ETY.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF845FPS bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 427195396 ENCODE Processing Pipeline bfea43fe214bb8ad165b9fdaaafb587e https://www.encodeproject.org/files/ENCFF845FPS/@@download/ENCFF845FPS.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF106GZB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF138CXP 168422 ENCODE Processing Pipeline ca5d3684c1a3cc7ac6943ca2dec48370 https://www.encodeproject.org/files/ENCFF106GZB/@@download/ENCFF106GZB.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF906YBW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF261ZWR 422206 ENCODE Processing Pipeline 3f03b652a3ffed113288b8ffed168ba8 https://www.encodeproject.org/files/ENCFF906YBW/@@download/ENCFF906YBW.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF492SNJ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 307059393 ENCODE Processing Pipeline 2b7cd636fb283ae0f93a754ae16c3b90 https://www.encodeproject.org/files/ENCFF492SNJ/@@download/ENCFF492SNJ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF815LEF bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 2732112 ENCODE Processing Pipeline 4fd3d4b814f88379c810cb3453838ba8 https://www.encodeproject.org/files/ENCFF815LEF/@@download/ENCFF815LEF.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF099MXC bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 4556867 ENCODE Processing Pipeline 4815bbf64cefc1a6c8ecac7b0fb849db https://www.encodeproject.org/files/ENCFF099MXC/@@download/ENCFF099MXC.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF280AHM bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF099MXC 10607374 ENCODE Processing Pipeline 55d815e30729a9a6d811cba211af4db6 https://www.encodeproject.org/files/ENCFF280AHM/@@download/ENCFF280AHM.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF662TQY bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF515LFS 10718414 ENCODE Processing Pipeline 370465385fcce39c8f4846c28617913a https://www.encodeproject.org/files/ENCFF662TQY/@@download/ENCFF662TQY.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF515LFS bed narrowPeak peaks and background as input for IDR ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 4605454 ENCODE Processing Pipeline df080a7bd275815f61a75344112b6019 https://www.encodeproject.org/files/ENCFF515LFS/@@download/ENCFF515LFS.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF387EMO bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF815LEF 5976547 ENCODE Processing Pipeline b3ac8ce3a0e76425920d67c03fd84f11 https://www.encodeproject.org/files/ENCFF387EMO/@@download/ENCFF387EMO.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF138CXP bed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099MXC, ENCFF515LFS, ENCFF815LEF 66073 ENCODE Processing Pipeline 4fdd5e2ca1e6f3aa2adab2b3cddf7520 https://www.encodeproject.org/files/ENCFF138CXP/@@download/ENCFF138CXP.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF261ZWR bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099MXC, ENCFF515LFS, ENCFF815LEF 204157 ENCODE Processing Pipeline 8b99923b94fbef4a4366487ff0ed48f3 https://www.encodeproject.org/files/ENCFF261ZWR/@@download/ENCFF261ZWR.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF002BFK fastq reads ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1719435050 Richard Myers, HAIB 39669c8b22b70ecac3b31f27416003cd SRA:SRR5339028 https://www.encodeproject.org/files/ENCFF002BFK/@@download/ENCFF002BFK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF002BFL fastq reads ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1718537202 Richard Myers, HAIB c14272a4448e742611e2f99c32a735f2 SRA:SRR5339029 https://www.encodeproject.org/files/ENCFF002BFL/@@download/ENCFF002BFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFW/ released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF237YJY bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 547038386 ENCODE Processing Pipeline c194b0c1a62360097159130a9cd42364 https://www.encodeproject.org/files/ENCFF237YJY/@@download/ENCFF237YJY.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF056UMQ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 1125307116 ENCODE Processing Pipeline f3564079d9c277889bba6d2dda078c10 https://www.encodeproject.org/files/ENCFF056UMQ/@@download/ENCFF056UMQ.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF006ANA bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 549596907 ENCODE Processing Pipeline e9007cb24d358ded99f8a10706816a8a https://www.encodeproject.org/files/ENCFF006ANA/@@download/ENCFF006ANA.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF869EQD bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 1113266622 ENCODE Processing Pipeline 281ddd4f87bdbb0766ecc6bef4bfbb37 https://www.encodeproject.org/files/ENCFF869EQD/@@download/ENCFF869EQD.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF305DNA bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 5409592 ENCODE Processing Pipeline 93f75b21553a98bd1d29cf1e1165f03a https://www.encodeproject.org/files/ENCFF305DNA/@@download/ENCFF305DNA.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF193TXF bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF021LAP 13468719 ENCODE Processing Pipeline 4bcca763ab6facf487a8511f0bc2aefc https://www.encodeproject.org/files/ENCFF193TXF/@@download/ENCFF193TXF.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF760IFZ bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021LAP, ENCFF283QCO, ENCFF305DNA 370617 ENCODE Processing Pipeline fc6b1747ced34ffb5b0c695b5120610d https://www.encodeproject.org/files/ENCFF760IFZ/@@download/ENCFF760IFZ.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF283QCO bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 5944397 ENCODE Processing Pipeline c5a1ccee1fd2fe27f7c40c0aa1289bb9 https://www.encodeproject.org/files/ENCFF283QCO/@@download/ENCFF283QCO.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF021LAP bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 6808412 ENCODE Processing Pipeline 3ca1d5387398cffdf3ce9dc1aa36d01f https://www.encodeproject.org/files/ENCFF021LAP/@@download/ENCFF021LAP.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF742XOI bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021LAP, ENCFF283QCO, ENCFF305DNA 251620 ENCODE Processing Pipeline 7c8b9118a0087a075d49c5d7a0952c12 https://www.encodeproject.org/files/ENCFF742XOI/@@download/ENCFF742XOI.bed.gz hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF931JYI bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF305DNA 11266319 ENCODE Processing Pipeline 91c0348fda4cc8f82ccc4b302e6103d9 https://www.encodeproject.org/files/ENCFF931JYI/@@download/ENCFF931JYI.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF344FAD bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF283QCO 13342799 ENCODE Processing Pipeline 77fce65653886e7ebf484cb12c2e4234 https://www.encodeproject.org/files/ENCFF344FAD/@@download/ENCFF344FAD.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF862YUS bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF742XOI 588516 ENCODE Processing Pipeline d3cb6c55e89c2838f06810a16145ff93 https://www.encodeproject.org/files/ENCFF862YUS/@@download/ENCFF862YUS.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF599YMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF760IFZ 780264 ENCODE Processing Pipeline ae5307b0b330e7502f3513d3e3cd2da0 https://www.encodeproject.org/files/ENCFF599YMQ/@@download/ENCFF599YMQ.bigBed hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF209SJM bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF807MUK 1317947874 ENCODE Processing Pipeline 810097b2a3d3f3fb148e106e5eade5e9 https://www.encodeproject.org/files/ENCFF209SJM/@@download/ENCFF209SJM.bam hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF901ETI bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF807MUK 1296681228 ENCODE Processing Pipeline 35ba72acf22f34470001a2bdf0d546f5 https://www.encodeproject.org/files/ENCFF901ETI/@@download/ENCFF901ETI.bam hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF762OJJ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 1124519793 ENCODE Processing Pipeline 24d3daac5df34fc607c697f4a8a81f8e https://www.encodeproject.org/files/ENCFF762OJJ/@@download/ENCFF762OJJ.bigWig hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF496IEH bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 6928369 ENCODE Processing Pipeline dbb91b95a00245ee35d1d669c7495045 https://www.encodeproject.org/files/ENCFF496IEH/@@download/ENCFF496IEH.bed.gz hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF761BJR bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF162BDU 11332032 ENCODE Processing Pipeline 614e9e14e30c5ca4fdfc0182f22da12c https://www.encodeproject.org/files/ENCFF761BJR/@@download/ENCFF761BJR.bigBed hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF894KAJ bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 518558390 ENCODE Processing Pipeline 580839bc59ca7476ff2c9b2361120e82 https://www.encodeproject.org/files/ENCFF894KAJ/@@download/ENCFF894KAJ.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF162BDU bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF223KCT 5588455 ENCODE Processing Pipeline 1f3567c960dc1a40d7c5fc384fd7a346 https://www.encodeproject.org/files/ENCFF162BDU/@@download/ENCFF162BDU.bed.gz hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF319PMQ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 551365596 ENCODE Processing Pipeline a854de810f61820fdc338e5e153d0b19 https://www.encodeproject.org/files/ENCFF319PMQ/@@download/ENCFF319PMQ.bigWig hg19 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF400ILK bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 548123499 ENCODE Processing Pipeline 3cea2558a306b457525809e8785b99da https://www.encodeproject.org/files/ENCFF400ILK/@@download/ENCFF400ILK.bigWig hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF486PYA bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 1117677730 ENCODE Processing Pipeline ccb59b051be0daa48aaa3a5a06f33c83 https://www.encodeproject.org/files/ENCFF486PYA/@@download/ENCFF486PYA.bigWig hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF777XYO bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 6114774 ENCODE Processing Pipeline 591a63e89b91ba7784a1f2dd8d5bdeca https://www.encodeproject.org/files/ENCFF777XYO/@@download/ENCFF777XYO.bed.gz hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF434RBQ bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF777XYO 13374473 ENCODE Processing Pipeline 59be9eb7ab19be7c23d79d787420bd96 https://www.encodeproject.org/files/ENCFF434RBQ/@@download/ENCFF434RBQ.bigBed hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF225HQM bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF496IEH 13471338 ENCODE Processing Pipeline d0c563870f4727d71cbbb07a584ad980 https://www.encodeproject.org/files/ENCFF225HQM/@@download/ENCFF225HQM.bigBed hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF881CKS bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 554529088 ENCODE Processing Pipeline bbb04e5dbeea0676e6c160cc62fa7282 https://www.encodeproject.org/files/ENCFF881CKS/@@download/ENCFF881CKS.bigWig hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF764IXV bam unfiltered alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF643CGH 1814203199 ENCODE Processing Pipeline d36503247090f781272786e660912649 https://www.encodeproject.org/files/ENCFF764IXV/@@download/ENCFF764IXV.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF496BNB bam unfiltered alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF643CGH 1821027299 ENCODE Processing Pipeline 9f53b239ac30df56fad4dfd6e04d19b7 https://www.encodeproject.org/files/ENCFF496BNB/@@download/ENCFF496BNB.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF472MGT bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF643CGH 1304221358 ENCODE Processing Pipeline 1a57275751cb5a7d4dac63ae6dffab03 https://www.encodeproject.org/files/ENCFF472MGT/@@download/ENCFF472MGT.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF383ODW bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF643CGH 1325427381 ENCODE Processing Pipeline 546db6ced2a21c9bdb1ad352c973b5bc https://www.encodeproject.org/files/ENCFF383ODW/@@download/ENCFF383ODW.bam GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF499PMB bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 593614813 ENCODE Processing Pipeline 7233236e658bca6693c5f6924539bc9e https://www.encodeproject.org/files/ENCFF499PMB/@@download/ENCFF499PMB.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF193MGP bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 682213889 ENCODE Processing Pipeline cae254c8ce01fde75db50bf77baf03e6 https://www.encodeproject.org/files/ENCFF193MGP/@@download/ENCFF193MGP.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF461SOE bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 1130320012 ENCODE Processing Pipeline 5d128ec8c8a547d16321592248a75a74 https://www.encodeproject.org/files/ENCFF461SOE/@@download/ENCFF461SOE.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF662NZE bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 509114173 ENCODE Processing Pipeline 368f6c9654bf425c150522509826f6bf https://www.encodeproject.org/files/ENCFF662NZE/@@download/ENCFF662NZE.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF394JES bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 545472230 ENCODE Processing Pipeline 6f352a3bd0456248ec9618da83c45afa https://www.encodeproject.org/files/ENCFF394JES/@@download/ENCFF394JES.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF304SIN bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 1118934828 ENCODE Processing Pipeline a831312a3ba3ceef2c962f43a25d4273 https://www.encodeproject.org/files/ENCFF304SIN/@@download/ENCFF304SIN.bigWig GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF142JGU bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 6807601 ENCODE Processing Pipeline f8a8e242dabf5384a6717fcb92b9dd69 https://www.encodeproject.org/files/ENCFF142JGU/@@download/ENCFF142JGU.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF012WTF bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU 13472859 ENCODE Processing Pipeline 410d4f87ef0f74a1e58b1426c6ec4c50 https://www.encodeproject.org/files/ENCFF012WTF/@@download/ENCFF012WTF.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF461IYM bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF673FMT 13349663 ENCODE Processing Pipeline aeac0d7526079e07f28ac31d5a7a9404 https://www.encodeproject.org/files/ENCFF461IYM/@@download/ENCFF461IYM.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF916QGP bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 5411850 ENCODE Processing Pipeline bac99f3216ff62694517e4ddd8c6af68 https://www.encodeproject.org/files/ENCFF916QGP/@@download/ENCFF916QGP.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF018BOV bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF916QGP 11277630 ENCODE Processing Pipeline 5ece84628e2065d43afd1c0fb5eda69c https://www.encodeproject.org/files/ENCFF018BOV/@@download/ENCFF018BOV.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF269LTR bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU, ENCFF419RSJ, ENCFF673FMT, ENCFF916QGP 256651 ENCODE Processing Pipeline b49388341fbf59b8e2853648316facad https://www.encodeproject.org/files/ENCFF269LTR/@@download/ENCFF269LTR.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF673FMT bed narrowPeak peaks and background as input for IDR ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 5948761 ENCODE Processing Pipeline 9f096c41507cae83734ddc21e62ea0db https://www.encodeproject.org/files/ENCFF673FMT/@@download/ENCFF673FMT.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF592LKK bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF269LTR 595704 ENCODE Processing Pipeline a16589d60a379b8316cf75d6b2d6ca09 https://www.encodeproject.org/files/ENCFF592LKK/@@download/ENCFF592LKK.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF745ANU bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU, ENCFF419RSJ, ENCFF673FMT, ENCFF916QGP 382019 ENCODE Processing Pipeline cff6f88f836c9a4566acf3a4bc39d9a0 https://www.encodeproject.org/files/ENCFF745ANU/@@download/ENCFF745ANU.bed.gz GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF482BSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF745ANU 797564 ENCODE Processing Pipeline 461623e0c7c3e9edced0ce13791a9d62 https://www.encodeproject.org/files/ENCFF482BSZ/@@download/ENCFF482BSZ.bigBed GRCh38 released antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF891RJI bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF972SOG 451269 ENCODE Processing Pipeline 9b130066ec3c18c72ae181b010d4e7ff https://www.encodeproject.org/files/ENCFF891RJI/@@download/ENCFF891RJI.bigBed hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF972SOG bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162BDU, ENCFF496IEH, ENCFF777XYO 229670 ENCODE Processing Pipeline 8e8a22cc5e08a12827fd8705e6db2cf8 https://www.encodeproject.org/files/ENCFF972SOG/@@download/ENCFF972SOG.bed.gz hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF746DYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF692GBM 589795 ENCODE Processing Pipeline 357d09e64f008ccf0f840245013fbc86 https://www.encodeproject.org/files/ENCFF746DYZ/@@download/ENCFF746DYZ.bigBed hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF692GBM bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162BDU, ENCFF496IEH, ENCFF777XYO 337339 ENCODE Processing Pipeline 1acc555b446c6ccf848d0b6257a65ad6 https://www.encodeproject.org/files/ENCFF692GBM/@@download/ENCFF692GBM.bed.gz hg19 archived antibody characterized with exemption, borderline replicate concordance mismatched file status ENCFF000WFF bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFP 340487535 Michael Snyder, Stanford 56b23e8d99bb713a4cbb6ac350d24b05 https://www.encodeproject.org/files/ENCFF000WFF/@@download/ENCFF000WFF.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFG bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFQ 379234249 Michael Snyder, Stanford a0f078b0a9c12b111f20bf033489508d https://www.encodeproject.org/files/ENCFF000WFG/@@download/ENCFF000WFG.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFH bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFO 1577946 Michael Snyder, Stanford f309dbd54c17cc5ec9ca16785c3a7daf https://www.encodeproject.org/files/ENCFF000WFH/@@download/ENCFF000WFH.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFI bigWig signal ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 415513501 Michael Snyder, Stanford ba04f4be1ed41f7b194fd2ddc67f3148 https://www.encodeproject.org/files/ENCFF000WFI/@@download/ENCFF000WFI.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000WFP fastq reads ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1086585492 Michael Snyder, Stanford 8d3906f4589d38589972cb33d7ed0abc https://www.encodeproject.org/files/ENCFF000WFP/@@download/ENCFF000WFP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFQ fastq reads ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 971472556 Michael Snyder, Stanford 95503899da3b159099d0de8566e3d027 https://www.encodeproject.org/files/ENCFF000WFQ/@@download/ENCFF000WFQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001VFO bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 611449 Michael Snyder, Stanford 923cf1f45e7cae25ebfc6c93147e9718 https://www.encodeproject.org/files/ENCFF001VFO/@@download/ENCFF001VFO.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CPR bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 380865 ENCODE Consortium Analysis Working Group 76fd4d8cc7d5952f67c615f60a14afda https://www.encodeproject.org/files/ENCFF002CPR/@@download/ENCFF002CPR.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF695KXC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPR 951553 ENCODE Consortium 79faf1be309bfef1fa7373d5e6ff605a https://www.encodeproject.org/files/ENCFF695KXC/@@download/ENCFF695KXC.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF620DDS bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF643CGH 1032641340 ENCODE Processing Pipeline 9f1080dd5ae72b5f2406114eb63204a3 https://www.encodeproject.org/files/ENCFF620DDS/@@download/ENCFF620DDS.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF336RFB bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF643CGH 1122686220 ENCODE Processing Pipeline 39b5bcfa3e462fecd090b6eeb12971c0 https://www.encodeproject.org/files/ENCFF336RFB/@@download/ENCFF336RFB.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF987AWV bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF643CGH 598478181 ENCODE Processing Pipeline 80ef58f0340a09b52d379e67844dba27 https://www.encodeproject.org/files/ENCFF987AWV/@@download/ENCFF987AWV.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF910NHM bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF643CGH 613920078 ENCODE Processing Pipeline 7b9f20635061509c606876f023a38641 https://www.encodeproject.org/files/ENCFF910NHM/@@download/ENCFF910NHM.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF641CUP bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF807MUK 1118316133 ENCODE Processing Pipeline 47f13886d2bd5c3b43efd695a502dbb7 https://www.encodeproject.org/files/ENCFF641CUP/@@download/ENCFF641CUP.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF096FSP bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF807MUK 1028428889 ENCODE Processing Pipeline 8526d6a4f5243db38ba1c0c8f44973da https://www.encodeproject.org/files/ENCFF096FSP/@@download/ENCFF096FSP.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF532CDZ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF807MUK 613824617 ENCODE Processing Pipeline 70db697e3f270019cf5551d36f8aee85 https://www.encodeproject.org/files/ENCFF532CDZ/@@download/ENCFF532CDZ.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF498BXQ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF807MUK 598054346 ENCODE Processing Pipeline bb56840a7baa1cd0fa790a0db697fc35 https://www.encodeproject.org/files/ENCFF498BXQ/@@download/ENCFF498BXQ.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF776GMP bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 243846040 ENCODE Processing Pipeline 6ecb51d23a5ea62ccb12b0606cb776c8 https://www.encodeproject.org/files/ENCFF776GMP/@@download/ENCFF776GMP.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF228HAQ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 77341993 ENCODE Processing Pipeline 247c57d253885c0bdfa33b112e27fe8e https://www.encodeproject.org/files/ENCFF228HAQ/@@download/ENCFF228HAQ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF595HYD bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 429901485 ENCODE Processing Pipeline e8f80ebd0dd5f734073828cfa271a048 https://www.encodeproject.org/files/ENCFF595HYD/@@download/ENCFF595HYD.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF054TZW bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 4520409 ENCODE Processing Pipeline def22d49fd1bea246ad3a6729ac518c9 https://www.encodeproject.org/files/ENCFF054TZW/@@download/ENCFF054TZW.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF052EPC bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 5023109 ENCODE Processing Pipeline b9c2c60b5102aa2ea49ebbe298371e70 https://www.encodeproject.org/files/ENCFF052EPC/@@download/ENCFF052EPC.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF875GEQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF327NLV 594144 ENCODE Processing Pipeline 758c29930cbc8310ebab56e033aefb8d https://www.encodeproject.org/files/ENCFF875GEQ/@@download/ENCFF875GEQ.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF490VYC bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052EPC, ENCFF054TZW, ENCFF113YPN 360409 ENCODE Processing Pipeline 83b95b0b1fe7e2d9274f754390afa39e https://www.encodeproject.org/files/ENCFF490VYC/@@download/ENCFF490VYC.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF457FYU bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 165378623 ENCODE Processing Pipeline 6696324367fc075d797351d94805d5de https://www.encodeproject.org/files/ENCFF457FYU/@@download/ENCFF457FYU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF113YPN bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 4140241 ENCODE Processing Pipeline 0a19fc910c0bb468dd11d35c927acbc9 https://www.encodeproject.org/files/ENCFF113YPN/@@download/ENCFF113YPN.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF743BZR bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF052EPC 13068265 ENCODE Processing Pipeline e68aa414cd39054955a31acfcfb55852 https://www.encodeproject.org/files/ENCFF743BZR/@@download/ENCFF743BZR.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF374HNZ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 171824047 ENCODE Processing Pipeline 24406d9b24275874fd1906adc715d026 https://www.encodeproject.org/files/ENCFF374HNZ/@@download/ENCFF374HNZ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF273WAS bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 204139054 ENCODE Processing Pipeline f384e06e436aceae5fe336d7970c82ad https://www.encodeproject.org/files/ENCFF273WAS/@@download/ENCFF273WAS.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF282ODT bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF054TZW 10284783 ENCODE Processing Pipeline 36fa022622c6de7ff12ddfbfeab239b8 https://www.encodeproject.org/files/ENCFF282ODT/@@download/ENCFF282ODT.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF157IRI bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113YPN 10010252 ENCODE Processing Pipeline e04d1fa923bfa64163657e661dba1f92 https://www.encodeproject.org/files/ENCFF157IRI/@@download/ENCFF157IRI.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF327NLV bed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052EPC, ENCFF054TZW, ENCFF113YPN 280153 ENCODE Processing Pipeline 4359d75c821f817cf46ca0072a0c669a https://www.encodeproject.org/files/ENCFF327NLV/@@download/ENCFF327NLV.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF114FIS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF490VYC 722781 ENCODE Processing Pipeline 512880ed832e4673f7e261d5bcb72bf6 https://www.encodeproject.org/files/ENCFF114FIS/@@download/ENCFF114FIS.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF554YCY bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 430374803 ENCODE Processing Pipeline a79d2d46dd07dcfb890a02d2cd3b4d14 https://www.encodeproject.org/files/ENCFF554YCY/@@download/ENCFF554YCY.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF343WTN bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 244155033 ENCODE Processing Pipeline 820fe8b03a6b84c8ea28dd55180379b6 https://www.encodeproject.org/files/ENCFF343WTN/@@download/ENCFF343WTN.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF407UYH bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 5046651 ENCODE Processing Pipeline 8e845f41188619066c4ecb9d7cab8c95 https://www.encodeproject.org/files/ENCFF407UYH/@@download/ENCFF407UYH.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF611SGJ bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF407UYH 13095995 ENCODE Processing Pipeline abfd6028545f949eb99d69d9ff82799d https://www.encodeproject.org/files/ENCFF611SGJ/@@download/ENCFF611SGJ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF571FGG bed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF285WOP, ENCFF348ICN, ENCFF407UYH, ENCFF419RSJ 287621 ENCODE Processing Pipeline d64276ed1d39af2107a9d0dd22cadda1 https://www.encodeproject.org/files/ENCFF571FGG/@@download/ENCFF571FGG.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF971BRF bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF285WOP 10297645 ENCODE Processing Pipeline b3a41ec3d09347417621b5319ed012d2 https://www.encodeproject.org/files/ENCFF971BRF/@@download/ENCFF971BRF.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF896UZB bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF285WOP, ENCFF348ICN, ENCFF407UYH, ENCFF419RSJ 370287 ENCODE Processing Pipeline 912cd305de68c2dc64c0e0e29b097a0d https://www.encodeproject.org/files/ENCFF896UZB/@@download/ENCFF896UZB.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF571NAX bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 171880092 ENCODE Processing Pipeline 83f70e77a2d2431ac233ddee7fdcb144 https://www.encodeproject.org/files/ENCFF571NAX/@@download/ENCFF571NAX.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF285WOP bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 4534744 ENCODE Processing Pipeline 127396f8704d0435a0c4487efb66f2c9 https://www.encodeproject.org/files/ENCFF285WOP/@@download/ENCFF285WOP.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF518OLR bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF348ICN 10014911 ENCODE Processing Pipeline 88f19f35a5d53e7a8e3bd53a3ba8d467 https://www.encodeproject.org/files/ENCFF518OLR/@@download/ENCFF518OLR.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF268NXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF571FGG 602943 ENCODE Processing Pipeline f3ead951962cfcd2e0de199d6f96c384 https://www.encodeproject.org/files/ENCFF268NXQ/@@download/ENCFF268NXQ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF423AUD bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 77347234 ENCODE Processing Pipeline fe2a53eb617ac36b4f28fefdb39a166a https://www.encodeproject.org/files/ENCFF423AUD/@@download/ENCFF423AUD.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF383GJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF896UZB 869959 ENCODE Processing Pipeline d983ba1547fdf206b20e453969f1d709 https://www.encodeproject.org/files/ENCFF383GJE/@@download/ENCFF383GJE.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF130LTQ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 166121336 ENCODE Processing Pipeline d9abd02ccd9019454434b987ab6e7f45 https://www.encodeproject.org/files/ENCFF130LTQ/@@download/ENCFF130LTQ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF508VCB bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 202548971 ENCODE Processing Pipeline fba7998265ec514261a26c184cff2248 https://www.encodeproject.org/files/ENCFF508VCB/@@download/ENCFF508VCB.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF348ICN bed narrowPeak peaks and background as input for IDR ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 4142798 ENCODE Processing Pipeline 07056d629130f0f52ce4790b0fa19fae https://www.encodeproject.org/files/ENCFF348ICN/@@download/ENCFF348ICN.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF002BFH fastq reads ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1272359428 Richard Myers, HAIB ba6a8d0f63526b139a763ac29ecfcb08 SRA:SRR5339391 https://www.encodeproject.org/files/ENCFF002BFH/@@download/ENCFF002BFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released antibody characterized with exemption, low read depth ENCFF964RPP fastq reads ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1314889666 Richard Myers, HAIB b2eeb24154559932eced2b9dabcc4973 SRA:SRR5339390 https://www.encodeproject.org/files/ENCFF964RPP/@@download/ENCFF964RPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released antibody characterized with exemption, low read depth ENCFF581VMI bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF643CGH 1377852338 ENCODE Processing Pipeline ab16f893ac6506062760ba22605e79a5 https://www.encodeproject.org/files/ENCFF581VMI/@@download/ENCFF581VMI.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF162MTY bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF643CGH 1054788070 ENCODE Processing Pipeline a40d0f581f1c9bd8b90a08894ca0d60f https://www.encodeproject.org/files/ENCFF162MTY/@@download/ENCFF162MTY.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF193PTK bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF964RPP 1387483505 ENCODE Processing Pipeline 2fd698f5b5c82afe482d52335ab8072a https://www.encodeproject.org/files/ENCFF193PTK/@@download/ENCFF193PTK.bam hg19 released antibody characterized with exemption, low read depth ENCFF936WIW bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF964RPP 1388985304 ENCODE Processing Pipeline 334e4066c38761349f178dca58d0dbe2 https://www.encodeproject.org/files/ENCFF936WIW/@@download/ENCFF936WIW.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF045MGB bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF807MUK 1375527748 ENCODE Processing Pipeline 7b181c3fc9a6590b7a9953264685c7d5 https://www.encodeproject.org/files/ENCFF045MGB/@@download/ENCFF045MGB.bam hg19 released antibody characterized with exemption, low read depth ENCFF500GPO bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF964RPP 1051799974 ENCODE Processing Pipeline 7f6a54b74440f971bd3ded4b5c9bbaa0 https://www.encodeproject.org/files/ENCFF500GPO/@@download/ENCFF500GPO.bam hg19 released antibody characterized with exemption, low read depth ENCFF614KRR bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF964RPP 1056986153 ENCODE Processing Pipeline 76947ec6ef90e32b1ccc6463e389d3f9 https://www.encodeproject.org/files/ENCFF614KRR/@@download/ENCFF614KRR.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF517YSM bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF807MUK 1048679444 ENCODE Processing Pipeline f542a92b10f88d5b03d66a033833841a https://www.encodeproject.org/files/ENCFF517YSM/@@download/ENCFF517YSM.bam hg19 released antibody characterized with exemption, low read depth ENCFF881BYX bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 776051773 ENCODE Processing Pipeline 43d322dad4d95b205db7d87b16b6e4c7 https://www.encodeproject.org/files/ENCFF881BYX/@@download/ENCFF881BYX.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF966LCJ bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 809821614 ENCODE Processing Pipeline b9cfe8afc3cddef861f99731ff45594a https://www.encodeproject.org/files/ENCFF966LCJ/@@download/ENCFF966LCJ.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF648MAE bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 878301320 ENCODE Processing Pipeline d7452e962515e498a7f34f1d172e4faa https://www.encodeproject.org/files/ENCFF648MAE/@@download/ENCFF648MAE.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF284OTT bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 525215756 ENCODE Processing Pipeline 050ba6ecc94658cc4ef4cbad60282b96 https://www.encodeproject.org/files/ENCFF284OTT/@@download/ENCFF284OTT.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF745JSM bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 539129417 ENCODE Processing Pipeline db887a63fe0cfa45b2f421e2ef3c0cf6 https://www.encodeproject.org/files/ENCFF745JSM/@@download/ENCFF745JSM.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF639LCK bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 838786357 ENCODE Processing Pipeline 6c954581ab2163ed7d8d0dacf104305e https://www.encodeproject.org/files/ENCFF639LCK/@@download/ENCFF639LCK.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF659OTK bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF646WFE 13465302 ENCODE Processing Pipeline 773726a4b8fdd8f8dfe6503c94a5ab4a https://www.encodeproject.org/files/ENCFF659OTK/@@download/ENCFF659OTK.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF698YPW bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF961VUW 11322439 ENCODE Processing Pipeline 79b4fd0d2562d0314a1c291bae45ba7d https://www.encodeproject.org/files/ENCFF698YPW/@@download/ENCFF698YPW.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF646WFE bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 6062346 ENCODE Processing Pipeline 0524e595bf8fef96484aa775673a8b21 https://www.encodeproject.org/files/ENCFF646WFE/@@download/ENCFF646WFE.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF795GZP bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 6395569 ENCODE Processing Pipeline 2552bf0b9e257d55c0d002d5765e350e https://www.encodeproject.org/files/ENCFF795GZP/@@download/ENCFF795GZP.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF711VDK bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF795GZP 13636096 ENCODE Processing Pipeline 13f4997e1fe7fcd3260b33c566d456db https://www.encodeproject.org/files/ENCFF711VDK/@@download/ENCFF711VDK.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF961VUW bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 5458452 ENCODE Processing Pipeline 7f6d0775533a4e3bc388164b68d2ddd3 https://www.encodeproject.org/files/ENCFF961VUW/@@download/ENCFF961VUW.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF503NOA bigBed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF035AJG 1073227 ENCODE Processing Pipeline 9c8ee0c78780a92303ba71057816bd79 https://www.encodeproject.org/files/ENCFF503NOA/@@download/ENCFF503NOA.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF086FOI bigBed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF091YID 1198509 ENCODE Processing Pipeline ea002a8b6e6e1a6bc373b6f089f7a1a4 https://www.encodeproject.org/files/ENCFF086FOI/@@download/ENCFF086FOI.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF035AJG bed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF646WFE, ENCFF795GZP, ENCFF961VUW 521147 ENCODE Processing Pipeline 603440d0b20450c1c33b08646e9b3510 https://www.encodeproject.org/files/ENCFF035AJG/@@download/ENCFF035AJG.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF091YID bed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF646WFE, ENCFF795GZP, ENCFF961VUW 605844 ENCODE Processing Pipeline 6a779db924de2fca75c71bc99be06fc1 https://www.encodeproject.org/files/ENCFF091YID/@@download/ENCFF091YID.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF608VRG bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 770224812 ENCODE Processing Pipeline e6b9f472e3e53f793a88b993db621bf6 https://www.encodeproject.org/files/ENCFF608VRG/@@download/ENCFF608VRG.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF948DXE bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 661703033 ENCODE Processing Pipeline 5b48690b0c185e740a1c138dd49faef3 https://www.encodeproject.org/files/ENCFF948DXE/@@download/ENCFF948DXE.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF741RBE bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 531223046 ENCODE Processing Pipeline e53d1a4bc5556ca7cf8f0d1f864d9cd4 https://www.encodeproject.org/files/ENCFF741RBE/@@download/ENCFF741RBE.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF457KTG bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 1023909768 ENCODE Processing Pipeline 0d9c7fde416f10e7a65d436975790e9f https://www.encodeproject.org/files/ENCFF457KTG/@@download/ENCFF457KTG.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF292CRL bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 516320299 ENCODE Processing Pipeline 2b698d88cec6618214352762efc046ee https://www.encodeproject.org/files/ENCFF292CRL/@@download/ENCFF292CRL.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF510TYC bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 5371872 ENCODE Processing Pipeline 594c0369b32afa4408986dc95524133a https://www.encodeproject.org/files/ENCFF510TYC/@@download/ENCFF510TYC.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF642JEY bed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF263KGZ, ENCFF510TYC, ENCFF874IMP 475482 ENCODE Processing Pipeline 0e18718a3bd65d189c46e0d31de54a86 https://www.encodeproject.org/files/ENCFF642JEY/@@download/ENCFF642JEY.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF403JWE bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 865373117 ENCODE Processing Pipeline 1c370e3835a95a8c12abd7999bbd2044 https://www.encodeproject.org/files/ENCFF403JWE/@@download/ENCFF403JWE.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF148GYG bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF510TYC 11216979 ENCODE Processing Pipeline 6250b55b402df62f445ed759c09f954d https://www.encodeproject.org/files/ENCFF148GYG/@@download/ENCFF148GYG.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF874IMP bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 5824274 ENCODE Processing Pipeline 6027065cb694432f59cc9542acf08c01 https://www.encodeproject.org/files/ENCFF874IMP/@@download/ENCFF874IMP.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF263KGZ bed narrowPeak peaks and background as input for IDR ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 6273661 ENCODE Processing Pipeline 63d3b4d0d42da1b87519840882dc2961 https://www.encodeproject.org/files/ENCFF263KGZ/@@download/ENCFF263KGZ.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF534CKB bed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF263KGZ, ENCFF510TYC, ENCFF874IMP 555303 ENCODE Processing Pipeline 9bde60dc90e039a208a7b9b7abedd50c https://www.encodeproject.org/files/ENCFF534CKB/@@download/ENCFF534CKB.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF777PFN bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF874IMP 13208040 ENCODE Processing Pipeline b0604e91c5a3934611bffca3518c21e2 https://www.encodeproject.org/files/ENCFF777PFN/@@download/ENCFF777PFN.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF451DLP bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF263KGZ 13501720 ENCODE Processing Pipeline 4b869a19169beca93da1180a7c88f619 https://www.encodeproject.org/files/ENCFF451DLP/@@download/ENCFF451DLP.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF531NIE bigBed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF642JEY 1012506 ENCODE Processing Pipeline 36726dec034e30b4b78e16c458a4839e https://www.encodeproject.org/files/ENCFF531NIE/@@download/ENCFF531NIE.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF735XEX bigBed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF534CKB 1133667 ENCODE Processing Pipeline c63a2697bd34d44dabf3a580552ee9e1 https://www.encodeproject.org/files/ENCFF735XEX/@@download/ENCFF735XEX.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF561XFC fastq reads ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 1 75 single-ended 1428840605 Bradley Bernstein, Broad 5ef9a97294ad78cb31a78bd39be599f0 SRA:SRR5833223 https://www.encodeproject.org/files/ENCFF561XFC/@@download/ENCFF561XFC.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released ENCFF425QLF fastq reads ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1279064955 Bradley Bernstein, Broad 9ea65ef1a1d37d97a07d39bc3b5a9180 SRA:SRR5833224 https://www.encodeproject.org/files/ENCFF425QLF/@@download/ENCFF425QLF.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released ENCFF725MHO bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF807MUK 1537507271 ENCODE Processing Pipeline 582dcb8183b2b29f71a220d8e0847139 https://www.encodeproject.org/files/ENCFF725MHO/@@download/ENCFF725MHO.bam hg19 released ENCFF531BVQ bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF643CGH 1539477321 ENCODE Processing Pipeline 8ab828ab2ebb454186e89eb7216de859 https://www.encodeproject.org/files/ENCFF531BVQ/@@download/ENCFF531BVQ.bam GRCh38 released ENCFF274KZU bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF643CGH 1740790670 ENCODE Processing Pipeline 12fbcc8a4ed6db0079c09b841e91e7d4 https://www.encodeproject.org/files/ENCFF274KZU/@@download/ENCFF274KZU.bam GRCh38 released ENCFF168LEX bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF807MUK 1738172998 ENCODE Processing Pipeline 2f65a92863c3e92d4b367fd3efcf5610 https://www.encodeproject.org/files/ENCFF168LEX/@@download/ENCFF168LEX.bam hg19 released ENCFF145BPW bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF643CGH 1191857576 ENCODE Processing Pipeline bb903f6c465c637ef14ec201007d1ebc https://www.encodeproject.org/files/ENCFF145BPW/@@download/ENCFF145BPW.bam GRCh38 released ENCFF207IEO bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF643CGH 1421144123 ENCODE Processing Pipeline 31311f887a683b2dbf343f4f3e735535 https://www.encodeproject.org/files/ENCFF207IEO/@@download/ENCFF207IEO.bam GRCh38 released ENCFF666GAR bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF807MUK 1416629118 ENCODE Processing Pipeline a878998dd9e0c4314c563fbbddc0cb92 https://www.encodeproject.org/files/ENCFF666GAR/@@download/ENCFF666GAR.bam hg19 released ENCFF965XIE bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF807MUK 1187859612 ENCODE Processing Pipeline 84842553ed9e716b73d56a3158fb018f https://www.encodeproject.org/files/ENCFF965XIE/@@download/ENCFF965XIE.bam hg19 released ENCFF797STP bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 1166818284 ENCODE Processing Pipeline 1c28d5094e9275b796aa75b170494275 https://www.encodeproject.org/files/ENCFF797STP/@@download/ENCFF797STP.bigWig GRCh38 released ENCFF130DUS bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 1020468530 ENCODE Processing Pipeline 9297970e55134353dd252c6317e030b9 https://www.encodeproject.org/files/ENCFF130DUS/@@download/ENCFF130DUS.bigWig hg19 released ENCFF109KIA bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 851730239 ENCODE Processing Pipeline de9e257bf3f3c849ec16ff1995250a5e https://www.encodeproject.org/files/ENCFF109KIA/@@download/ENCFF109KIA.bigWig GRCh38 released ENCFF333XID bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 1120880699 ENCODE Processing Pipeline c7221e2153e28ea8ba593489bffd78b7 https://www.encodeproject.org/files/ENCFF333XID/@@download/ENCFF333XID.bigWig GRCh38 released ENCFF669RXE bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 870304180 ENCODE Processing Pipeline 0284402506ec60b239696fe8c7c18068 https://www.encodeproject.org/files/ENCFF669RXE/@@download/ENCFF669RXE.bigWig hg19 released ENCFF759MPM bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 952116942 ENCODE Processing Pipeline 0a8ffbf76f4a50092d02bba447d43abe https://www.encodeproject.org/files/ENCFF759MPM/@@download/ENCFF759MPM.bigWig GRCh38 released ENCFF806NNV bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 1011757298 ENCODE Processing Pipeline 48f3caf771084a3aeea12bf06e066614 https://www.encodeproject.org/files/ENCFF806NNV/@@download/ENCFF806NNV.bigWig GRCh38 released ENCFF744YTU bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 962674325 ENCODE Processing Pipeline 0205963cbc44d0d5750d0e1a939ce941 https://www.encodeproject.org/files/ENCFF744YTU/@@download/ENCFF744YTU.bigWig hg19 released ENCFF929PZJ bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 961582119 ENCODE Processing Pipeline 3783291dcfa1435040f36b81ae8430a7 https://www.encodeproject.org/files/ENCFF929PZJ/@@download/ENCFF929PZJ.bigWig hg19 released ENCFF588ZZF bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 1262303976 ENCODE Processing Pipeline 8f632134dd46c2a5e030b711ff4c9aa6 https://www.encodeproject.org/files/ENCFF588ZZF/@@download/ENCFF588ZZF.bigWig hg19 released ENCFF666BGO bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 6736762 ENCODE Processing Pipeline c4e6fec14efe5f6760afacf71a5d2e97 https://www.encodeproject.org/files/ENCFF666BGO/@@download/ENCFF666BGO.bed.gz GRCh38 released ENCFF213GXY bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 1346960704 ENCODE Processing Pipeline b8ea21a5747c8cdc940963f35f9dfdf0 https://www.encodeproject.org/files/ENCFF213GXY/@@download/ENCFF213GXY.bigWig GRCh38 released ENCFF396XXM bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF982HET 13609508 ENCODE Processing Pipeline 28e3329f7da431a98314b85975071940 https://www.encodeproject.org/files/ENCFF396XXM/@@download/ENCFF396XXM.bigBed hg19 released ENCFF608GYJ bed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF728BVI, ENCFF893XGS, ENCFF982HET 31708 ENCODE Processing Pipeline c81800fc085b810e7fbc397d75bd9024 https://www.encodeproject.org/files/ENCFF608GYJ/@@download/ENCFF608GYJ.bed.gz hg19 released ENCFF042FRR bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 1352913777 ENCODE Processing Pipeline e1d7ef33de4e9e10d4ce78f9b1cfd1b3 https://www.encodeproject.org/files/ENCFF042FRR/@@download/ENCFF042FRR.bigWig hg19 released ENCFF389WNE bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF449EPM 13572807 ENCODE Processing Pipeline ec74e20dbcc350294da72e2ec68021d6 https://www.encodeproject.org/files/ENCFF389WNE/@@download/ENCFF389WNE.bigBed GRCh38 released ENCFF650XKL bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF728BVI 13360953 ENCODE Processing Pipeline 92c95d7e761eb7b19c59d1edfc79db79 https://www.encodeproject.org/files/ENCFF650XKL/@@download/ENCFF650XKL.bigBed hg19 released ENCFF337UUV bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 5610937 ENCODE Processing Pipeline d56a1d49a9ac69b547aaaac5f3d34bfa https://www.encodeproject.org/files/ENCFF337UUV/@@download/ENCFF337UUV.bed.gz GRCh38 released ENCFF687SSY bed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF337UUV, ENCFF419RSJ, ENCFF449EPM, ENCFF666BGO 39468 ENCODE Processing Pipeline b0bfa9dc8a1cb4a71bf0ae3b5bebd933 https://www.encodeproject.org/files/ENCFF687SSY/@@download/ENCFF687SSY.bed.gz GRCh38 released ENCFF982HET bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 5695720 ENCODE Processing Pipeline dacd80e8055a8eea9128c4bd72dea1e1 https://www.encodeproject.org/files/ENCFF982HET/@@download/ENCFF982HET.bed.gz hg19 released ENCFF893XGS bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 5899643 ENCODE Processing Pipeline 6228031582af1a85c88261d6557e1cca https://www.encodeproject.org/files/ENCFF893XGS/@@download/ENCFF893XGS.bed.gz hg19 released ENCFF414HOK bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF893XGS 13567898 ENCODE Processing Pipeline f15b586d21924fb30fb50142459e77f3 https://www.encodeproject.org/files/ENCFF414HOK/@@download/ENCFF414HOK.bigBed hg19 released ENCFF814CZI bed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF728BVI, ENCFF893XGS, ENCFF982HET 31983 ENCODE Processing Pipeline 7f6c46172d37388e3b8ae753494e6392 https://www.encodeproject.org/files/ENCFF814CZI/@@download/ENCFF814CZI.bed.gz hg19 released ENCFF449EPM bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 5670813 ENCODE Processing Pipeline 66b508644ec719e4769bba8a1ba7b297 https://www.encodeproject.org/files/ENCFF449EPM/@@download/ENCFF449EPM.bed.gz GRCh38 released ENCFF728BVI bed narrowPeak peaks and background as input for IDR ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 6993124 ENCODE Processing Pipeline c2740d3295c8c6869791e9bcb063c7de https://www.encodeproject.org/files/ENCFF728BVI/@@download/ENCFF728BVI.bed.gz hg19 released ENCFF319HCQ bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF666BGO 13574854 ENCODE Processing Pipeline 18d11faf5fe045fe1ad7a52a812107fd https://www.encodeproject.org/files/ENCFF319HCQ/@@download/ENCFF319HCQ.bigBed GRCh38 released ENCFF627GPM bed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF337UUV, ENCFF419RSJ, ENCFF449EPM, ENCFF666BGO 35996 ENCODE Processing Pipeline 388f2940dcd454b7bddb4547c4ffd076 https://www.encodeproject.org/files/ENCFF627GPM/@@download/ENCFF627GPM.bed.gz GRCh38 released ENCFF278JOC bigBed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF627GPM 149779 ENCODE Processing Pipeline 45314f0e85e3b5db4f497609e7b32b4b https://www.encodeproject.org/files/ENCFF278JOC/@@download/ENCFF278JOC.bigBed GRCh38 released ENCFF404XDM bigBed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF687SSY 136976 ENCODE Processing Pipeline 520275c50dce43f2879755db7a9c1c8d https://www.encodeproject.org/files/ENCFF404XDM/@@download/ENCFF404XDM.bigBed GRCh38 released ENCFF883NKQ bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF337UUV 11486047 ENCODE Processing Pipeline 731820cfe3f2e4dd7fd9c9e98c34dc59 https://www.encodeproject.org/files/ENCFF883NKQ/@@download/ENCFF883NKQ.bigBed GRCh38 released ENCFF259XKL bigBed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF608GYJ 122149 ENCODE Processing Pipeline 87999de98357e7f46fa656eabfe9f2f5 https://www.encodeproject.org/files/ENCFF259XKL/@@download/ENCFF259XKL.bigBed hg19 released ENCFF084OBR bigBed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF814CZI 123327 ENCODE Processing Pipeline b44c6a88374b7d2f73cfe1ac574cc832 https://www.encodeproject.org/files/ENCFF084OBR/@@download/ENCFF084OBR.bigBed hg19 released ENCFF201HJY fastq reads ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 1982745894 Bradley Bernstein, Broad c484e347561cde525e7fb8fcfce74172 https://www.encodeproject.org/files/ENCFF201HJY/@@download/ENCFF201HJY.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF651KLA bam unfiltered alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF807MUK 2306713046 ENCODE Processing Pipeline 6c743b7d7c6239bb5b58421c40860af7 https://www.encodeproject.org/files/ENCFF651KLA/@@download/ENCFF651KLA.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF075KQC bam unfiltered alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF643CGH 2308335366 ENCODE Processing Pipeline 7bdc7721ebe3037bfc6eae33c75f8dd4 https://www.encodeproject.org/files/ENCFF075KQC/@@download/ENCFF075KQC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF992FMF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF807MUK 1879711232 ENCODE Processing Pipeline 57c2cf3139e6e8c39230b8cc750fbd14 https://www.encodeproject.org/files/ENCFF992FMF/@@download/ENCFF992FMF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF549ZXF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF643CGH 1886531229 ENCODE Processing Pipeline d81ad340e3a6ed0bf59f6487f2ee40c3 https://www.encodeproject.org/files/ENCFF549ZXF/@@download/ENCFF549ZXF.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF017NYS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF109YBE 216547 ENCODE Processing Pipeline 0a2b6f35e5fff81a6d2d2fc8829843b4 https://www.encodeproject.org/files/ENCFF017NYS/@@download/ENCFF017NYS.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF714MSZ bigWig fold change over control ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 964659111 ENCODE Processing Pipeline beb38a3b499f55f53dae19e741412b96 https://www.encodeproject.org/files/ENCFF714MSZ/@@download/ENCFF714MSZ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF025OHW bigWig signal p-value ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 1024270457 ENCODE Processing Pipeline ef6ec9f32a14e284ed8cfedf2b13f94d https://www.encodeproject.org/files/ENCFF025OHW/@@download/ENCFF025OHW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF469ITO bed narrowPeak peaks and background as input for IDR ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 6473699 ENCODE Processing Pipeline d06c42930a297a00d8aafc6d927fa8ac https://www.encodeproject.org/files/ENCFF469ITO/@@download/ENCFF469ITO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF109YBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF001TDO, ENCFF469ITO 88155 ENCODE Processing Pipeline 4c6a7edd9fa2c986f8000b80e81fae7b https://www.encodeproject.org/files/ENCFF109YBE/@@download/ENCFF109YBE.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF449ZFX bigWig fold change over control ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 969023515 ENCODE Processing Pipeline c407ad4385a5263bad664727a3105258 https://www.encodeproject.org/files/ENCFF449ZFX/@@download/ENCFF449ZFX.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF211LWD bigBed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF469ITO 13441335 ENCODE Processing Pipeline fd8a4dd2adb9ac5048bcf2963460efcb https://www.encodeproject.org/files/ENCFF211LWD/@@download/ENCFF211LWD.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF595VZV bigWig signal p-value ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 809427678 ENCODE Processing Pipeline d0429a0592c478360bc2dc73b0b98865 https://www.encodeproject.org/files/ENCFF595VZV/@@download/ENCFF595VZV.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF449AYD bed narrowPeak peaks and background as input for IDR ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 6390526 ENCODE Processing Pipeline 28e4821a6f783eec6f2fe06e40dee44f https://www.encodeproject.org/files/ENCFF449AYD/@@download/ENCFF449AYD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF277FXB bigBed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF449AYD 13457869 ENCODE Processing Pipeline b23bd7e69a9c33656120fda806a73de3 https://www.encodeproject.org/files/ENCFF277FXB/@@download/ENCFF277FXB.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF248JAL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF419RSJ, ENCFF449AYD 92393 ENCODE Processing Pipeline 77df56b21901637f423b554093099912 https://www.encodeproject.org/files/ENCFF248JAL/@@download/ENCFF248JAL.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF525XVF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF248JAL 222983 ENCODE Processing Pipeline da7dd77bca4f8c02b8bfa7de176760e1 https://www.encodeproject.org/files/ENCFF525XVF/@@download/ENCFF525XVF.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF947SAR bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF807MUK 1214896093 ENCODE Processing Pipeline 60eab301f710abe6996d976975493d2b https://www.encodeproject.org/files/ENCFF947SAR/@@download/ENCFF947SAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF928UWV bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF807MUK 1087956119 ENCODE Processing Pipeline fb3d63b2f1ae753bba4a91c060f84caf https://www.encodeproject.org/files/ENCFF928UWV/@@download/ENCFF928UWV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF002EAM fastq reads ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 909297419 Michael Snyder, Stanford aa295e17af720c92960a15b0160b77a5 SRA:SRR6212847 https://www.encodeproject.org/files/ENCFF002EAM/@@download/ENCFF002EAM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002EAU fastq reads ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 859151945 Michael Snyder, Stanford d4c59a6a41a4013ff85b282b85413b2a SRA:SRR6212848 https://www.encodeproject.org/files/ENCFF002EAU/@@download/ENCFF002EAU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking, low read depth ENCFF942MNR bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF807MUK 717215972 ENCODE Processing Pipeline c30723360c07f05b020df20d0ec755ba https://www.encodeproject.org/files/ENCFF942MNR/@@download/ENCFF942MNR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF278BHT bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF807MUK 803304959 ENCODE Processing Pipeline 9c3f3712b0bfc7b5508a3dd1e96b8150 https://www.encodeproject.org/files/ENCFF278BHT/@@download/ENCFF278BHT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF982LUH bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 1041894018 ENCODE Processing Pipeline cb4b7d2a0a8eee29222f11f977b1d28d https://www.encodeproject.org/files/ENCFF982LUH/@@download/ENCFF982LUH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF455ZPQ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 978359166 ENCODE Processing Pipeline 59d3e26a171839c187ca8c3739e57105 https://www.encodeproject.org/files/ENCFF455ZPQ/@@download/ENCFF455ZPQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF175IME bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF643CGH 1091942709 ENCODE Processing Pipeline 949bb73810576b5f584a5934a17ae0f2 https://www.encodeproject.org/files/ENCFF175IME/@@download/ENCFF175IME.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF547IRX bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF643CGH 1220481659 ENCODE Processing Pipeline 8773ce4f2339bed9df42d06baa38dca7 https://www.encodeproject.org/files/ENCFF547IRX/@@download/ENCFF547IRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF139IMF bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF643CGH 717344229 ENCODE Processing Pipeline 9d2e4a5af729fbefe064ede29d85bd93 https://www.encodeproject.org/files/ENCFF139IMF/@@download/ENCFF139IMF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF778CYP bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF643CGH 804594746 ENCODE Processing Pipeline b069cc620a56903082cb5db143aa10ca https://www.encodeproject.org/files/ENCFF778CYP/@@download/ENCFF778CYP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF982OBU bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 548035056 ENCODE Processing Pipeline a7462995714695bd9383c3bb070f2786 https://www.encodeproject.org/files/ENCFF982OBU/@@download/ENCFF982OBU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF282FAY bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 560803645 ENCODE Processing Pipeline bd11989aebe4e975cd8c58bde3ec148a https://www.encodeproject.org/files/ENCFF282FAY/@@download/ENCFF282FAY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF922MAO bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 1092308800 ENCODE Processing Pipeline 2d4de4186992135c9e9e848a713d333a https://www.encodeproject.org/files/ENCFF922MAO/@@download/ENCFF922MAO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF980EZZ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 413073121 ENCODE Processing Pipeline d051a853d07f7a204538ec1ae816addf https://www.encodeproject.org/files/ENCFF980EZZ/@@download/ENCFF980EZZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF616TUE bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 493156101 ENCODE Processing Pipeline 0735a24e59db8d27f04a6a98687288e4 https://www.encodeproject.org/files/ENCFF616TUE/@@download/ENCFF616TUE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF039XKQ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 998392032 ENCODE Processing Pipeline d7e5e8700ed384aee95691a78b95163f https://www.encodeproject.org/files/ENCFF039XKQ/@@download/ENCFF039XKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF834YTO bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 4400293 ENCODE Processing Pipeline a29975ebb354f75dbce22788b1ba4f80 https://www.encodeproject.org/files/ENCFF834YTO/@@download/ENCFF834YTO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF187CPH bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 4203325 ENCODE Processing Pipeline 1304b59151474d98b8e8b0ab58345750 https://www.encodeproject.org/files/ENCFF187CPH/@@download/ENCFF187CPH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF268TPX bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF695WYW 11648608 ENCODE Processing Pipeline fc1251af0b02a37d6cc9a014fcb97e30 https://www.encodeproject.org/files/ENCFF268TPX/@@download/ENCFF268TPX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF603BID bed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF187CPH, ENCFF419RSJ, ENCFF695WYW, ENCFF834YTO 52972 ENCODE Processing Pipeline cbc96d465bf981c3babae0da23db72fe https://www.encodeproject.org/files/ENCFF603BID/@@download/ENCFF603BID.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF694BFN bigBed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF603BID 142024 ENCODE Processing Pipeline ba967b70b48cafd027115bf4f1abf7b6 https://www.encodeproject.org/files/ENCFF694BFN/@@download/ENCFF694BFN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF695WYW bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 5843948 ENCODE Processing Pipeline 6281380080e9f32f7a6088b2846b95e4 https://www.encodeproject.org/files/ENCFF695WYW/@@download/ENCFF695WYW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF354YJR bed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF187CPH, ENCFF419RSJ, ENCFF695WYW, ENCFF834YTO 43173 ENCODE Processing Pipeline 4bfebfed71a78ca223e5372badd617db https://www.encodeproject.org/files/ENCFF354YJR/@@download/ENCFF354YJR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF374GOP bigBed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF354YJR 127924 ENCODE Processing Pipeline 64a329e860a21cdf13c4e9698619ccaa https://www.encodeproject.org/files/ENCFF374GOP/@@download/ENCFF374GOP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF215PAU bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF834YTO 10884776 ENCODE Processing Pipeline 1c8567586d62606af73f2846016a651d https://www.encodeproject.org/files/ENCFF215PAU/@@download/ENCFF215PAU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF234JTX bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF187CPH 10919300 ENCODE Processing Pipeline c284e93ad6665e32556bb4d2f3fc3e5a https://www.encodeproject.org/files/ENCFF234JTX/@@download/ENCFF234JTX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF801LWT bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 427680541 ENCODE Processing Pipeline e4ba37205ce4b8bfe5c1f07fa16eb67f https://www.encodeproject.org/files/ENCFF801LWT/@@download/ENCFF801LWT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF499CSF bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 462790076 ENCODE Processing Pipeline 8e2301c5780b8a258a79d5dc796d2863 https://www.encodeproject.org/files/ENCFF499CSF/@@download/ENCFF499CSF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF211IQC bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 525058962 ENCODE Processing Pipeline 713eb9d623ef836a7c5dbf3a09981297 https://www.encodeproject.org/files/ENCFF211IQC/@@download/ENCFF211IQC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF186WIO bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 476612502 ENCODE Processing Pipeline cad9726ee4425baf24cb540f6c257cc9 https://www.encodeproject.org/files/ENCFF186WIO/@@download/ENCFF186WIO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF421XER bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 5884452 ENCODE Processing Pipeline 79f33c447967edd7667d2bf493b2d4af https://www.encodeproject.org/files/ENCFF421XER/@@download/ENCFF421XER.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF308ZGG bed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF421XER, ENCFF607QZV, ENCFF618CLL 47623 ENCODE Processing Pipeline 855faa28674750c111acec0d56d5d750 https://www.encodeproject.org/files/ENCFF308ZGG/@@download/ENCFF308ZGG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF618CLL bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 4392046 ENCODE Processing Pipeline eb0e1c79aecca23f1c1ffbcabfb8c607 https://www.encodeproject.org/files/ENCFF618CLL/@@download/ENCFF618CLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF607QZV bed narrowPeak peaks and background as input for IDR ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 4202263 ENCODE Processing Pipeline 35d64c561d4e98910bb0eb0599d6f9b4 https://www.encodeproject.org/files/ENCFF607QZV/@@download/ENCFF607QZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF578XJY bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF618CLL 10878305 ENCODE Processing Pipeline ac9202858f496a72f36c7cbcdb665bbd https://www.encodeproject.org/files/ENCFF578XJY/@@download/ENCFF578XJY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF487BOW bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF607QZV 10916070 ENCODE Processing Pipeline f3cea2f78a5dd91f210106dfdad9dc53 https://www.encodeproject.org/files/ENCFF487BOW/@@download/ENCFF487BOW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF569XVW bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF421XER 11634155 ENCODE Processing Pipeline b64585c06ee83d444e70cb8a02d3a0a4 https://www.encodeproject.org/files/ENCFF569XVW/@@download/ENCFF569XVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF662JYS bed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF421XER, ENCFF607QZV, ENCFF618CLL 38024 ENCODE Processing Pipeline f43584d0adf84ff001a0288425a3391b https://www.encodeproject.org/files/ENCFF662JYS/@@download/ENCFF662JYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF718CMI bigBed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF662JYS 121010 ENCODE Processing Pipeline a289fda28b148e4843a35ea79bfb2d34 https://www.encodeproject.org/files/ENCFF718CMI/@@download/ENCFF718CMI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF309TMP bigBed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF308ZGG 135016 ENCODE Processing Pipeline affb74770cef78150e84a69cb1f17b8e https://www.encodeproject.org/files/ENCFF309TMP/@@download/ENCFF309TMP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF000VVS bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 439498438 Peggy Farnham, USC 471cf6b88573c9becd318020fa9cd052 https://www.encodeproject.org/files/ENCFF000VVS/@@download/ENCFF000VVS.bam hg19 archived low read length, low read depth missing derived_from ENCFF000VVT bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 693186617 Peggy Farnham, USC c7f43718ec0e2d44cc8067f35ba9baeb https://www.encodeproject.org/files/ENCFF000VVT/@@download/ENCFF000VVT.bam hg19 archived low read length, low read depth missing derived_from ENCFF000VVU bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEJ 1347626 Peggy Farnham, USC 24b56bc35de0aa0b28b1576afe0d2f38 https://www.encodeproject.org/files/ENCFF000VVU/@@download/ENCFF000VVU.bigBed hg19 archived low read length, low read depth ENCFF000VVV fastq reads ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 895921320 Peggy Farnham, USC 945112f33e7e976a7a7083bc64d9db0b https://www.encodeproject.org/files/ENCFF000VVV/@@download/ENCFF000VVV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth ENCFF000VVX fastq reads ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1253344955 Peggy Farnham, USC a3ea1577d93fa493115a0d7c26d66196 https://www.encodeproject.org/files/ENCFF000VVX/@@download/ENCFF000VVX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth ENCFF000VVZ bigWig signal ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 408312250 Peggy Farnham, USC 6d7e34e51d59f22fa463188b21197452 https://www.encodeproject.org/files/ENCFF000VVZ/@@download/ENCFF000VVZ.bigWig hg19 archived low read length, low read depth missing derived_from ENCFF001VEJ bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 511749 Peggy Farnham, USC c9cad861697c5dbe74451345e2ca78af https://www.encodeproject.org/files/ENCFF001VEJ/@@download/ENCFF001VEJ.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF002COU bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 242594 ENCODE Consortium Analysis Working Group 4b26f9f15c2b8820c627e516850e9802 https://www.encodeproject.org/files/ENCFF002COU/@@download/ENCFF002COU.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF085PUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COU 621572 ENCODE Consortium f9daede870a2633f97cc7fe440488292 https://www.encodeproject.org/files/ENCFF085PUZ/@@download/ENCFF085PUZ.bigBed hg19 archived low read length, low read depth ENCFF392JYM bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF643CGH 1266628924 ENCODE Processing Pipeline c1406248e95782d36224f127fefd2633 https://www.encodeproject.org/files/ENCFF392JYM/@@download/ENCFF392JYM.bam GRCh38 released low read length, low read depth ENCFF045YYY bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF643CGH 610822083 ENCODE Processing Pipeline b8104f3e3d4f182bf34856dfd736e997 https://www.encodeproject.org/files/ENCFF045YYY/@@download/ENCFF045YYY.bam GRCh38 released low read length, low read depth ENCFF736MXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF643CGH 828196574 ENCODE Processing Pipeline 7bc29dbbbe4052edd7936e311c9af471 https://www.encodeproject.org/files/ENCFF736MXP/@@download/ENCFF736MXP.bam GRCh38 released low read length, low read depth ENCFF677FLS bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF643CGH 908630163 ENCODE Processing Pipeline f009e546170c76476cd5093c617db088 https://www.encodeproject.org/files/ENCFF677FLS/@@download/ENCFF677FLS.bam GRCh38 released low read length, low read depth ENCFF353MVL bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF807MUK 905489164 ENCODE Processing Pipeline 5fd50075fab5383f88c941153a21e1cf https://www.encodeproject.org/files/ENCFF353MVL/@@download/ENCFF353MVL.bam hg19 released low read length, low read depth ENCFF076DFZ bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF807MUK 1261698037 ENCODE Processing Pipeline c256c941ef4b4eede7bb7fa16ce3b31b https://www.encodeproject.org/files/ENCFF076DFZ/@@download/ENCFF076DFZ.bam hg19 released low read length, low read depth ENCFF361LSB bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF807MUK 610923120 ENCODE Processing Pipeline 17bdbeced8295ba9bfd1bf229223f9d9 https://www.encodeproject.org/files/ENCFF361LSB/@@download/ENCFF361LSB.bam hg19 released low read length, low read depth ENCFF507DXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF807MUK 828492143 ENCODE Processing Pipeline 5514d739d1af72a0e15feb46991c61d0 https://www.encodeproject.org/files/ENCFF507DXP/@@download/ENCFF507DXP.bam hg19 released low read length, low read depth ENCFF248LVZ bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 253394825 ENCODE Processing Pipeline d97971628cf938c186511b4b7a5b5e9e https://www.encodeproject.org/files/ENCFF248LVZ/@@download/ENCFF248LVZ.bigWig hg19 released low read length, low read depth ENCFF561TGT bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 364374630 ENCODE Processing Pipeline 241c646fa5f5954905d6e3b1ce71f9f1 https://www.encodeproject.org/files/ENCFF561TGT/@@download/ENCFF561TGT.bigWig hg19 released low read length, low read depth ENCFF872DIW bed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF330XDW, ENCFF723VGS, ENCFF742JAC 228390 ENCODE Processing Pipeline 051337d90d90432bb5da5b3ff2d2a2d3 https://www.encodeproject.org/files/ENCFF872DIW/@@download/ENCFF872DIW.bed.gz hg19 released low read length, low read depth ENCFF029ROP bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 220199939 ENCODE Processing Pipeline b2f6c86d5fc34cc1196f8b4d583830ad https://www.encodeproject.org/files/ENCFF029ROP/@@download/ENCFF029ROP.bigWig hg19 released low read length, low read depth ENCFF260XOG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF872DIW 560612 ENCODE Processing Pipeline 33b91b23623572751a1f42a4a5f1d8cc https://www.encodeproject.org/files/ENCFF260XOG/@@download/ENCFF260XOG.bigBed hg19 released low read length, low read depth ENCFF073XZC bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF330XDW, ENCFF723VGS, ENCFF742JAC 239645 ENCODE Processing Pipeline 1e25bdbd10c76538c1fc79f86e4ff09f https://www.encodeproject.org/files/ENCFF073XZC/@@download/ENCFF073XZC.bed.gz hg19 released low read length, low read depth ENCFF664YGF bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 205773063 ENCODE Processing Pipeline a82b75817f5824be36b6dadf09951f60 https://www.encodeproject.org/files/ENCFF664YGF/@@download/ENCFF664YGF.bigWig hg19 released low read length, low read depth ENCFF314HHD bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 535631410 ENCODE Processing Pipeline 5d3358e02d4d9f65a32b9f72c2ba25b8 https://www.encodeproject.org/files/ENCFF314HHD/@@download/ENCFF314HHD.bigWig hg19 released low read length, low read depth ENCFF742JAC bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 5236641 ENCODE Processing Pipeline 77f98d049ac451bce636f125e2b98150 https://www.encodeproject.org/files/ENCFF742JAC/@@download/ENCFF742JAC.bed.gz hg19 released low read length, low read depth ENCFF723VGS bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 4593904 ENCODE Processing Pipeline 8e1ed270dfa1f118707f73a3211c49e7 https://www.encodeproject.org/files/ENCFF723VGS/@@download/ENCFF723VGS.bed.gz hg19 released low read length, low read depth ENCFF814RRH bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF330XDW 12963170 ENCODE Processing Pipeline 6b895c32816a6c501d72a6683b22b94d https://www.encodeproject.org/files/ENCFF814RRH/@@download/ENCFF814RRH.bigBed hg19 released low read length, low read depth ENCFF595NDQ bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF742JAC 13058221 ENCODE Processing Pipeline 76aacc6e6a7d99e1550f1a777d5815a5 https://www.encodeproject.org/files/ENCFF595NDQ/@@download/ENCFF595NDQ.bigBed hg19 released low read length, low read depth ENCFF995ZNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF073XZC 582389 ENCODE Processing Pipeline d3cae8b05711affb288c675794902b8e https://www.encodeproject.org/files/ENCFF995ZNQ/@@download/ENCFF995ZNQ.bigBed hg19 released low read length, low read depth ENCFF330XDW bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 4789023 ENCODE Processing Pipeline dc036f29a85e560071e4222c704640c3 https://www.encodeproject.org/files/ENCFF330XDW/@@download/ENCFF330XDW.bed.gz hg19 released low read length, low read depth ENCFF504KAH bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF723VGS 12736910 ENCODE Processing Pipeline e39be7058f90f40cd6af7352a371651e https://www.encodeproject.org/files/ENCFF504KAH/@@download/ENCFF504KAH.bigBed hg19 released low read length, low read depth ENCFF567ITH bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 209927126 ENCODE Processing Pipeline 3b2fec0466bbf10f9af75093b7eadcac https://www.encodeproject.org/files/ENCFF567ITH/@@download/ENCFF567ITH.bigWig hg19 released low read length, low read depth ENCFF089UNS bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 219222263 ENCODE Processing Pipeline 6f3ba7a61f6339407ddae13cf09a5f87 https://www.encodeproject.org/files/ENCFF089UNS/@@download/ENCFF089UNS.bigWig GRCh38 released low read length, low read depth ENCFF361NCG bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 248660028 ENCODE Processing Pipeline aea8e05a86f4b2ad071227bd2d6490b4 https://www.encodeproject.org/files/ENCFF361NCG/@@download/ENCFF361NCG.bigWig GRCh38 released low read length, low read depth ENCFF221JRL bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 209960687 ENCODE Processing Pipeline f9dc6b505f0c7e3d117e7fa7bd445ddc https://www.encodeproject.org/files/ENCFF221JRL/@@download/ENCFF221JRL.bigWig GRCh38 released low read length, low read depth ENCFF131VOT bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 207185522 ENCODE Processing Pipeline d58a3e2ace5aaca6003f1be41fa586fe https://www.encodeproject.org/files/ENCFF131VOT/@@download/ENCFF131VOT.bigWig GRCh38 released low read length, low read depth ENCFF111ORU bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 360256899 ENCODE Processing Pipeline 42316f572b848e76a6c8ef648bea1890 https://www.encodeproject.org/files/ENCFF111ORU/@@download/ENCFF111ORU.bigWig GRCh38 released low read length, low read depth ENCFF935KTD bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 538603922 ENCODE Processing Pipeline 39cc5006747f80fd77933655fae8cfe5 https://www.encodeproject.org/files/ENCFF935KTD/@@download/ENCFF935KTD.bigWig GRCh38 released low read length, low read depth ENCFF835CSR bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 4600644 ENCODE Processing Pipeline 4a747552a0848962566b56ab49ce8bca https://www.encodeproject.org/files/ENCFF835CSR/@@download/ENCFF835CSR.bed.gz GRCh38 released low read length, low read depth ENCFF520TMF bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 4817665 ENCODE Processing Pipeline 75b91ff1d9821a9cdce6e1764f412b61 https://www.encodeproject.org/files/ENCFF520TMF/@@download/ENCFF520TMF.bed.gz GRCh38 released low read length, low read depth ENCFF298JSC bed narrowPeak peaks and background as input for IDR ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 5238280 ENCODE Processing Pipeline f673723e998bc7876bcb2e781dca2a9e https://www.encodeproject.org/files/ENCFF298JSC/@@download/ENCFF298JSC.bed.gz GRCh38 released low read length, low read depth ENCFF567CCI bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF835CSR 12788850 ENCODE Processing Pipeline f4b872d7ec593957400c6fc27973f449 https://www.encodeproject.org/files/ENCFF567CCI/@@download/ENCFF567CCI.bigBed GRCh38 released low read length, low read depth ENCFF420IVC bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF520TMF 12981951 ENCODE Processing Pipeline 59f28754f51826abeddcb54bb73c9f51 https://www.encodeproject.org/files/ENCFF420IVC/@@download/ENCFF420IVC.bigBed GRCh38 released low read length, low read depth ENCFF263QTO bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC 13044423 ENCODE Processing Pipeline 3fa8b119ec28bd0ce7f6adb07dd42fd0 https://www.encodeproject.org/files/ENCFF263QTO/@@download/ENCFF263QTO.bigBed GRCh38 released low read length, low read depth ENCFF045OQX bed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC, ENCFF419RSJ, ENCFF520TMF, ENCFF835CSR 234145 ENCODE Processing Pipeline 2226697ad1edc5bec5c9572a24835a6c https://www.encodeproject.org/files/ENCFF045OQX/@@download/ENCFF045OQX.bed.gz GRCh38 released low read length, low read depth ENCFF090DZF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045OQX 572987 ENCODE Processing Pipeline 7f4c406b9472553d09e8a469ea26e35c https://www.encodeproject.org/files/ENCFF090DZF/@@download/ENCFF090DZF.bigBed GRCh38 released low read length, low read depth ENCFF197ABX bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC, ENCFF419RSJ, ENCFF520TMF, ENCFF835CSR 246335 ENCODE Processing Pipeline f01bf0f3a64cbf106fbd0595e0e83a83 https://www.encodeproject.org/files/ENCFF197ABX/@@download/ENCFF197ABX.bed.gz GRCh38 released low read length, low read depth ENCFF189FYY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF197ABX 596077 ENCODE Processing Pipeline 0b666d6c0896d57411ebf37ee8492214 https://www.encodeproject.org/files/ENCFF189FYY/@@download/ENCFF189FYY.bigBed GRCh38 released low read length, low read depth ENCFF824AUB bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF807MUK 5242603979 ENCODE Processing Pipeline bd56307da0e853ad225a13cc8434f092 https://www.encodeproject.org/files/ENCFF824AUB/@@download/ENCFF824AUB.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF066CFC bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF807MUK 5135076913 ENCODE Processing Pipeline 74f15fa36f0ae9853afaa66a0fcb47fc https://www.encodeproject.org/files/ENCFF066CFC/@@download/ENCFF066CFC.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF739DKT bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 1818368754 ENCODE Processing Pipeline 6c17e78a7988e05cfd132cc0dc8c4041 https://www.encodeproject.org/files/ENCFF739DKT/@@download/ENCFF739DKT.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF002EKZ fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002ELA 2358283980 Michael Snyder, Stanford 7de0fb8bd07777962a07c5efe4c60928 SRA:SRR5111435 https://www.encodeproject.org/files/ENCFF002EKZ/@@download/ENCFF002EKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF002ELA fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKZ 2315929041 Michael Snyder, Stanford 7cf1b8150ad689ba3a3b7650042660ed SRA:SRR5111435 https://www.encodeproject.org/files/ENCFF002ELA/@@download/ENCFF002ELA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF002ELB fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELE 2315195584 Michael Snyder, Stanford 93ed3156cdd2a7392a7e745ff99e36a1 SRA:SRR5111434 https://www.encodeproject.org/files/ENCFF002ELB/@@download/ENCFF002ELB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF002ELE fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELB 2355484908 Michael Snyder, Stanford 8b7cb4bfb92d5721d123d9b2ed6e9dd5 SRA:SRR5111434 https://www.encodeproject.org/files/ENCFF002ELE/@@download/ENCFF002ELE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF281ULQ bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 2156406061 ENCODE Processing Pipeline b09c271b6b03ec15d47227bb153aee5a https://www.encodeproject.org/files/ENCFF281ULQ/@@download/ENCFF281ULQ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF921NFP bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6110753 ENCODE Processing Pipeline e52657fac40c5ac9a2b369de1e79ef29 https://www.encodeproject.org/files/ENCFF921NFP/@@download/ENCFF921NFP.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF073OWF bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 7074765 ENCODE Processing Pipeline 02da8a7595ac4a13da6f3019e806279e https://www.encodeproject.org/files/ENCFF073OWF/@@download/ENCFF073OWF.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF709QKK bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6002614 ENCODE Processing Pipeline 6dae0589750cc96542c538f115984196 https://www.encodeproject.org/files/ENCFF709QKK/@@download/ENCFF709QKK.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF562EWO bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF709QKK 11355917 ENCODE Processing Pipeline b9218dc89706b5bde374cfb7003dd173 https://www.encodeproject.org/files/ENCFF562EWO/@@download/ENCFF562EWO.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF833QVH bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF921NFP 11353463 ENCODE Processing Pipeline efd7a2e66ab95a355ae1bacb0e62712c https://www.encodeproject.org/files/ENCFF833QVH/@@download/ENCFF833QVH.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF829YVT bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF073OWF 13394967 ENCODE Processing Pipeline ee79388fec4bf10235981ef87eba5105 https://www.encodeproject.org/files/ENCFF829YVT/@@download/ENCFF829YVT.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF568FPC bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF073OWF, ENCFF709QKK, ENCFF921NFP 92489 ENCODE Processing Pipeline af27fd62812a77a539dc18643134241a https://www.encodeproject.org/files/ENCFF568FPC/@@download/ENCFF568FPC.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF148PJT bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF568FPC 225341 ENCODE Processing Pipeline bae0a282c07455652c31378880410ceb https://www.encodeproject.org/files/ENCFF148PJT/@@download/ENCFF148PJT.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF817QHW bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF073OWF, ENCFF709QKK, ENCFF921NFP 189647 ENCODE Processing Pipeline e19074d05cfeb97f1ebf25e868bd35da https://www.encodeproject.org/files/ENCFF817QHW/@@download/ENCFF817QHW.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF476VJI bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817QHW 370394 ENCODE Processing Pipeline c93e96967145bb25467b2664f4235e8f https://www.encodeproject.org/files/ENCFF476VJI/@@download/ENCFF476VJI.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF785URO bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF807MUK 4204192281 ENCODE Processing Pipeline 9ccdd635480c87e71f7cd989de6810ac https://www.encodeproject.org/files/ENCFF785URO/@@download/ENCFF785URO.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF895RMY bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF807MUK 4554666184 ENCODE Processing Pipeline 6088d4b6294c35f65d089f36d93e3ea0 https://www.encodeproject.org/files/ENCFF895RMY/@@download/ENCFF895RMY.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF846UHE bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 1062646974 ENCODE Processing Pipeline ad166d6f3ddec9d5834d696278326d5a https://www.encodeproject.org/files/ENCFF846UHE/@@download/ENCFF846UHE.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF616ANV bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 1142075469 ENCODE Processing Pipeline 10804b2c95ad1d1c34cefc23792b1cff https://www.encodeproject.org/files/ENCFF616ANV/@@download/ENCFF616ANV.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF867IGT bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 1240620445 ENCODE Processing Pipeline 4d1bf12ed98658ae8e3081c7ff36c636 https://www.encodeproject.org/files/ENCFF867IGT/@@download/ENCFF867IGT.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF183VHL bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 1830737338 ENCODE Processing Pipeline 0d5ac88f90abab8d233144d901e147e2 https://www.encodeproject.org/files/ENCFF183VHL/@@download/ENCFF183VHL.bigWig hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF023LXY bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 1133460298 ENCODE Processing Pipeline dde20d8ba57000ec1d96fb629c2f6b51 https://www.encodeproject.org/files/ENCFF023LXY/@@download/ENCFF023LXY.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF728RVS bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6168711 ENCODE Processing Pipeline 535c735b1671fa12d4df693df1e88cf9 https://www.encodeproject.org/files/ENCFF728RVS/@@download/ENCFF728RVS.bed.gz hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF991LAG bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF728RVS 11369735 ENCODE Processing Pipeline 8ed8e48828ad58a4e4d54fc6ed6eac7c https://www.encodeproject.org/files/ENCFF991LAG/@@download/ENCFF991LAG.bigBed hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF019TKV bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6288601 ENCODE Processing Pipeline 0c771f82287777948022b7b5d6501df8 https://www.encodeproject.org/files/ENCFF019TKV/@@download/ENCFF019TKV.bed.gz hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF288OHY bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF019TKV 11362418 ENCODE Processing Pipeline dd5057dc82b0cc0c65148edc9f5588be https://www.encodeproject.org/files/ENCFF288OHY/@@download/ENCFF288OHY.bigBed hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF498FZI bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 2172016283 ENCODE Processing Pipeline d2bbb1ce010d3fd00e729fbe6b6342e5 https://www.encodeproject.org/files/ENCFF498FZI/@@download/ENCFF498FZI.bigWig hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF294YGK bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 7128719 ENCODE Processing Pipeline 25fbd37316d6c5541607d985b6f114c0 https://www.encodeproject.org/files/ENCFF294YGK/@@download/ENCFF294YGK.bed.gz hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF111ELG bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF294YGK 13395963 ENCODE Processing Pipeline cfc3830711b7f850515193a34b677430 https://www.encodeproject.org/files/ENCFF111ELG/@@download/ENCFF111ELG.bigBed hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF166UJI bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF643CGH 5141963893 ENCODE Processing Pipeline b485e8c52e74953ebf342f977a13e019 https://www.encodeproject.org/files/ENCFF166UJI/@@download/ENCFF166UJI.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF432SGY bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF643CGH 5241503065 ENCODE Processing Pipeline 95b8649e88d2a1da56b84423dd139923 https://www.encodeproject.org/files/ENCFF432SGY/@@download/ENCFF432SGY.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF494QGK bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF643CGH 4211711908 ENCODE Processing Pipeline 741a07a60462f0852e78ef1e4ab57f68 https://www.encodeproject.org/files/ENCFF494QGK/@@download/ENCFF494QGK.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF735CSF bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF643CGH 4605570442 ENCODE Processing Pipeline 27155ec9cf385540915998b934513617 https://www.encodeproject.org/files/ENCFF735CSF/@@download/ENCFF735CSF.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF677QYN bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 1348074246 ENCODE Processing Pipeline 45ee58d7440df949e94209b0b689567d https://www.encodeproject.org/files/ENCFF677QYN/@@download/ENCFF677QYN.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF018HCY bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 962519363 ENCODE Processing Pipeline 158a1b6a8b3768192860604bd2b340bb https://www.encodeproject.org/files/ENCFF018HCY/@@download/ENCFF018HCY.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF633OUL bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 1711274535 ENCODE Processing Pipeline d95fae7415b941a2c6c203b3cd9580d4 https://www.encodeproject.org/files/ENCFF633OUL/@@download/ENCFF633OUL.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF891PHU bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 1121688750 ENCODE Processing Pipeline 578401ebed9a7973b3267ac9c75c44f1 https://www.encodeproject.org/files/ENCFF891PHU/@@download/ENCFF891PHU.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF212BNK bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 1238605621 ENCODE Processing Pipeline 2b035aa34102a545e59f63a2e83bce02 https://www.encodeproject.org/files/ENCFF212BNK/@@download/ENCFF212BNK.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF085KGM bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 2151869499 ENCODE Processing Pipeline 21b843b4966e50bbd86757512de6e485 https://www.encodeproject.org/files/ENCFF085KGM/@@download/ENCFF085KGM.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF216XII bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF074VVE 11295145 ENCODE Processing Pipeline dca97e7545775c02e4d82f483f89ddbe https://www.encodeproject.org/files/ENCFF216XII/@@download/ENCFF216XII.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF375ZRO bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF176ESH 221958 ENCODE Processing Pipeline c10db63b47a9ff7b6b84e86245a2a45f https://www.encodeproject.org/files/ENCFF375ZRO/@@download/ENCFF375ZRO.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF400JCO bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF323QQU 345295 ENCODE Processing Pipeline a1a97810c228e747b8d422a97068e014 https://www.encodeproject.org/files/ENCFF400JCO/@@download/ENCFF400JCO.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF074VVE bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 6116891 ENCODE Processing Pipeline 3c6f37a6190130dce01a211b11323183 https://www.encodeproject.org/files/ENCFF074VVE/@@download/ENCFF074VVE.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF906TDK bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF916EPS 11387341 ENCODE Processing Pipeline c76efcab499ef652d412e533b6bdcc66 https://www.encodeproject.org/files/ENCFF906TDK/@@download/ENCFF906TDK.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF916EPS bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 6020623 ENCODE Processing Pipeline e452a7f68ad935c633224523291beef0 https://www.encodeproject.org/files/ENCFF916EPS/@@download/ENCFF916EPS.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF105HRK bed narrowPeak peaks and background as input for IDR ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 7055709 ENCODE Processing Pipeline efe5416ce5a6f02af5f4bf003e82c3de https://www.encodeproject.org/files/ENCFF105HRK/@@download/ENCFF105HRK.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF176ESH bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF074VVE, ENCFF105HRK, ENCFF419RSJ, ENCFF916EPS 88827 ENCODE Processing Pipeline 837bcbcab567f455b07d2dd9d3450f95 https://www.encodeproject.org/files/ENCFF176ESH/@@download/ENCFF176ESH.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF323QQU bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF074VVE, ENCFF105HRK, ENCFF419RSJ, ENCFF916EPS 171350 ENCODE Processing Pipeline 06065784fbad520454b98df0921fae5b https://www.encodeproject.org/files/ENCFF323QQU/@@download/ENCFF323QQU.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF476NLU bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF105HRK 13380318 ENCODE Processing Pipeline c75be6d24ca3f317ea5b1721cb22c84b https://www.encodeproject.org/files/ENCFF476NLU/@@download/ENCFF476NLU.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF680DVR bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF019TKV, ENCFF294YGK, ENCFF728RVS 74771 ENCODE Processing Pipeline 4e3a57aac6eea715e3793c4cdd90f078 https://www.encodeproject.org/files/ENCFF680DVR/@@download/ENCFF680DVR.bed.gz hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF249OMS bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF680DVR 166955 ENCODE Processing Pipeline df75f500484696413d71d6f439c2d5cf https://www.encodeproject.org/files/ENCFF249OMS/@@download/ENCFF249OMS.bigBed hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF557HJB bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF019TKV, ENCFF294YGK, ENCFF728RVS 157764 ENCODE Processing Pipeline c32f3b3d81c77f87265210662d341469 https://www.encodeproject.org/files/ENCFF557HJB/@@download/ENCFF557HJB.bed.gz hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF373RQB bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF557HJB 327452 ENCODE Processing Pipeline cb1da4576489f1e3790070e948d8cad6 https://www.encodeproject.org/files/ENCFF373RQB/@@download/ENCFF373RQB.bigBed hg19 archived antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF887BKA fastq reads ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 1 50 single-ended 2281198254 Richard Myers, HAIB 9bd13a544349ee81954aa27252608855 SRA:SRR5338649 https://www.encodeproject.org/files/ENCFF887BKA/@@download/ENCFF887BKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF354VZR fastq reads ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 1 50 single-ended 1747145757 Richard Myers, HAIB 2ad82ac441df32f657ffeeaa693df0de SRA:SRR5338648 https://www.encodeproject.org/files/ENCFF354VZR/@@download/ENCFF354VZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF692MUQ bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF643CGH 1678527986 ENCODE Processing Pipeline 8940799a9adf2bc0f16bf4d48df7cc6d https://www.encodeproject.org/files/ENCFF692MUQ/@@download/ENCFF692MUQ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF626FVT bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF643CGH, ENCFF887BKA 2107759784 ENCODE Processing Pipeline c43c8d60a403148e62643ab3db8744a4 https://www.encodeproject.org/files/ENCFF626FVT/@@download/ENCFF626FVT.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF389CJX bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF807MUK, ENCFF887BKA 2123956065 ENCODE Processing Pipeline 1022094d760cebdc79906916afcf3927 https://www.encodeproject.org/files/ENCFF389CJX/@@download/ENCFF389CJX.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF669GJB bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF807MUK 1678875995 ENCODE Processing Pipeline 41390f8a96869acfbd6f9e7fef15afca https://www.encodeproject.org/files/ENCFF669GJB/@@download/ENCFF669GJB.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF697EBC bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF807MUK, ENCFF887BKA 847566567 ENCODE Processing Pipeline 99d4d82c09345a62a1973841e6ede201 https://www.encodeproject.org/files/ENCFF697EBC/@@download/ENCFF697EBC.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF772ZLA bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF643CGH 870804648 ENCODE Processing Pipeline 19a03c716ac209069b26a1ccec1e0a8d https://www.encodeproject.org/files/ENCFF772ZLA/@@download/ENCFF772ZLA.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF554RCH bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF643CGH, ENCFF887BKA 855534594 ENCODE Processing Pipeline 7dfb0b136c0d6d0572ba376312932b55 https://www.encodeproject.org/files/ENCFF554RCH/@@download/ENCFF554RCH.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF092VSU bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF807MUK 863714936 ENCODE Processing Pipeline 3f8e471bd628e7c08363f9e8c8174fee https://www.encodeproject.org/files/ENCFF092VSU/@@download/ENCFF092VSU.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF061RWI bigBed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF031TYY 345706 ENCODE Processing Pipeline 34114e27a7e20c9d725f7253e4cd625b https://www.encodeproject.org/files/ENCFF061RWI/@@download/ENCFF061RWI.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF420YHY bed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF454MFQ, ENCFF799MMA, ENCFF836SKU 204510 ENCODE Processing Pipeline f584a6cb5c5943f310fe7bc4badc95af https://www.encodeproject.org/files/ENCFF420YHY/@@download/ENCFF420YHY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF974AWJ bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 764383057 ENCODE Processing Pipeline 39911326d3fa4dbe978e21a941895500 https://www.encodeproject.org/files/ENCFF974AWJ/@@download/ENCFF974AWJ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF727MOG bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 681391571 ENCODE Processing Pipeline 5cc55e0d9645ca94d18f2c7b409296f8 https://www.encodeproject.org/files/ENCFF727MOG/@@download/ENCFF727MOG.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF740WZP bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 613593186 ENCODE Processing Pipeline d5dd7c173a90fb3d37bee73f24d791c9 https://www.encodeproject.org/files/ENCFF740WZP/@@download/ENCFF740WZP.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF454MFQ bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 6400676 ENCODE Processing Pipeline 7d68e4ce346c8a44f63f8878c2a7b3fd https://www.encodeproject.org/files/ENCFF454MFQ/@@download/ENCFF454MFQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF740BDA bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF836SKU 10996696 ENCODE Processing Pipeline 6f40318c9e64b7172e48e002c5bc0653 https://www.encodeproject.org/files/ENCFF740BDA/@@download/ENCFF740BDA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF316ZBT bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF799MMA 13135183 ENCODE Processing Pipeline 37c24e7473f09e395b0d6fc56e468643 https://www.encodeproject.org/files/ENCFF316ZBT/@@download/ENCFF316ZBT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF253MUG bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF454MFQ 13243890 ENCODE Processing Pipeline e1a8020ef07f3ca8e0f9e136a721a3fe https://www.encodeproject.org/files/ENCFF253MUG/@@download/ENCFF253MUG.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF442AII bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 688403930 ENCODE Processing Pipeline 2149b2df82cfba295257566e444fdc6c https://www.encodeproject.org/files/ENCFF442AII/@@download/ENCFF442AII.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF863EUS bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 446121770 ENCODE Processing Pipeline a70210ad4396abdbec902abc4816c3ae https://www.encodeproject.org/files/ENCFF863EUS/@@download/ENCFF863EUS.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF031TYY bed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF454MFQ, ENCFF799MMA, ENCFF836SKU 167872 ENCODE Processing Pipeline 6b186fa9eb84e4b964f124526a34df6b https://www.encodeproject.org/files/ENCFF031TYY/@@download/ENCFF031TYY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF122POQ bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 432187408 ENCODE Processing Pipeline 44eed2e292afdee28e7901dcd1f355e6 https://www.encodeproject.org/files/ENCFF122POQ/@@download/ENCFF122POQ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF836SKU bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 5381323 ENCODE Processing Pipeline d585bead9e1e3f1a9aa5da5bbb2b3c93 https://www.encodeproject.org/files/ENCFF836SKU/@@download/ENCFF836SKU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF799MMA bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 5877259 ENCODE Processing Pipeline dcb1d7b6ba2f33da62248a26ecb5f149 https://www.encodeproject.org/files/ENCFF799MMA/@@download/ENCFF799MMA.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF390ORN bigBed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF420YHY 476284 ENCODE Processing Pipeline e83d300cc561f23352f35c239d6f600e https://www.encodeproject.org/files/ENCFF390ORN/@@download/ENCFF390ORN.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF230YKN bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 732849606 ENCODE Processing Pipeline 2dfa68b671e1ad90951451b014f8f1ef https://www.encodeproject.org/files/ENCFF230YKN/@@download/ENCFF230YKN.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF935LZP bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 592819923 ENCODE Processing Pipeline 1d4fe8c0c90fcf024ebbb9e512f4bf5b https://www.encodeproject.org/files/ENCFF935LZP/@@download/ENCFF935LZP.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF478FRH bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 783129977 ENCODE Processing Pipeline a7f6d20af3660d8c6c25deb0e2a3d195 https://www.encodeproject.org/files/ENCFF478FRH/@@download/ENCFF478FRH.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF711VLR bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 440877057 ENCODE Processing Pipeline 98d158d3b156dd5191ac1f9e6d5de7c5 https://www.encodeproject.org/files/ENCFF711VLR/@@download/ENCFF711VLR.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF945IOL bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 427461668 ENCODE Processing Pipeline aefb1105a4eceb8c94c7b1a05cd280ca https://www.encodeproject.org/files/ENCFF945IOL/@@download/ENCFF945IOL.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF674GHR bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 713245454 ENCODE Processing Pipeline e916f08142836e5c55f322d9b1806e62 https://www.encodeproject.org/files/ENCFF674GHR/@@download/ENCFF674GHR.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF484UXN bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 5691583 ENCODE Processing Pipeline ef01a24688242ee1e58c2d8681ce106e https://www.encodeproject.org/files/ENCFF484UXN/@@download/ENCFF484UXN.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF599RLK bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO 13236138 ENCODE Processing Pipeline f43541d7cef9eb903d53c51fd6bde4ea https://www.encodeproject.org/files/ENCFF599RLK/@@download/ENCFF599RLK.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF650GEE bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 5166830 ENCODE Processing Pipeline 94edb79b81d90f09e2bad686137907ec https://www.encodeproject.org/files/ENCFF650GEE/@@download/ENCFF650GEE.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF181ICO bed narrowPeak peaks and background as input for IDR ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 6130068 ENCODE Processing Pipeline d35fb1000ed64794716f066026558b0f https://www.encodeproject.org/files/ENCFF181ICO/@@download/ENCFF181ICO.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF801WCK bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF484UXN 13071703 ENCODE Processing Pipeline eef32405c68c4df8a2d78ad9b7b26df0 https://www.encodeproject.org/files/ENCFF801WCK/@@download/ENCFF801WCK.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF266DYD bigBed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF533MFQ 354041 ENCODE Processing Pipeline 15127f35da9155dc15c9659745e6d6fe https://www.encodeproject.org/files/ENCFF266DYD/@@download/ENCFF266DYD.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF949QBH bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF650GEE 10905871 ENCODE Processing Pipeline c1f8be7dbcefb7def1e01fed95bbd20a https://www.encodeproject.org/files/ENCFF949QBH/@@download/ENCFF949QBH.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF533MFQ bed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO, ENCFF419RSJ, ENCFF484UXN, ENCFF650GEE 173518 ENCODE Processing Pipeline a1dd3107317a2b7972727801e58eea61 https://www.encodeproject.org/files/ENCFF533MFQ/@@download/ENCFF533MFQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF417SVR bed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO, ENCFF419RSJ, ENCFF484UXN, ENCFF650GEE 205072 ENCODE Processing Pipeline b88d6c975642a609e014bcc85e010b4e https://www.encodeproject.org/files/ENCFF417SVR/@@download/ENCFF417SVR.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF520WAX bigBed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF417SVR 476591 ENCODE Processing Pipeline b241e1995fdf8c1a34b1da9b2cd3b23b https://www.encodeproject.org/files/ENCFF520WAX/@@download/ENCFF520WAX.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000VTE bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 451223341 Michael Snyder, Stanford 8c81d8d4d47b03d2951d6177bbd5c67a https://www.encodeproject.org/files/ENCFF000VTE/@@download/ENCFF000VTE.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000VTJ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEA 1406524 Michael Snyder, Stanford 18e0456e96255c195ffdc42ce3fd6f59 https://www.encodeproject.org/files/ENCFF000VTJ/@@download/ENCFF000VTJ.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VTK fastq reads ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 898934912 Michael Snyder, Stanford 4297a5629e61ed26b12608ae74151239 https://www.encodeproject.org/files/ENCFF000VTK/@@download/ENCFF000VTK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VTM fastq reads ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 780264511 Michael Snyder, Stanford 998460080520ef182867c15358e07ecc https://www.encodeproject.org/files/ENCFF000VTM/@@download/ENCFF000VTM.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000VTO bigWig signal ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 355909046 Michael Snyder, Stanford 258aa98a810292c688ac757522550c73 https://www.encodeproject.org/files/ENCFF000VTO/@@download/ENCFF000VTO.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000VTQ bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 470895138 Michael Snyder, Stanford c15eb4690495f220ace61f835817bc1d https://www.encodeproject.org/files/ENCFF000VTQ/@@download/ENCFF000VTQ.bam hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001VEA bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 562889 Michael Snyder, Stanford 5bcacfb808cf88352d15ed49ee006cca https://www.encodeproject.org/files/ENCFF001VEA/@@download/ENCFF001VEA.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CON bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 175765 ENCODE Consortium Analysis Working Group 34f9cca27fb8070cd9c4c9072f031e0f https://www.encodeproject.org/files/ENCFF002CON/@@download/ENCFF002CON.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF265PSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CON 497170 ENCODE Consortium 96d001885633557aab8bbdd3ec02074d https://www.encodeproject.org/files/ENCFF265PSF/@@download/ENCFF265PSF.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF698OEZ bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF643CGH 801142261 ENCODE Processing Pipeline 2dac092c86e38f8cdfd0e68c3c3011cc https://www.encodeproject.org/files/ENCFF698OEZ/@@download/ENCFF698OEZ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF701YQE bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF643CGH 905382192 ENCODE Processing Pipeline f714d09e25ff7078923bbc68e64feca4 https://www.encodeproject.org/files/ENCFF701YQE/@@download/ENCFF701YQE.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF933NBT bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF643CGH 550630382 ENCODE Processing Pipeline 1db499aa41445b0590fcfa64e58c6ac9 https://www.encodeproject.org/files/ENCFF933NBT/@@download/ENCFF933NBT.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065BQF bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF643CGH 518838233 ENCODE Processing Pipeline 865b6c73759c980a0ccd761dab89d86c https://www.encodeproject.org/files/ENCFF065BQF/@@download/ENCFF065BQF.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF850KRW bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF807MUK 797854799 ENCODE Processing Pipeline a14a884f19dae5fa4ebe5f0cb83f9074 https://www.encodeproject.org/files/ENCFF850KRW/@@download/ENCFF850KRW.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF343GPD bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF807MUK 518807282 ENCODE Processing Pipeline 1282e387f1d2ef192c447a6c3c4881d4 https://www.encodeproject.org/files/ENCFF343GPD/@@download/ENCFF343GPD.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF560OFM bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF807MUK 902167904 ENCODE Processing Pipeline 27ce3b26663ebe5b36021c8e04517893 https://www.encodeproject.org/files/ENCFF560OFM/@@download/ENCFF560OFM.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF047BBR bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF807MUK 550298134 ENCODE Processing Pipeline 77c3b3318712735a957dd113d6fe6204 https://www.encodeproject.org/files/ENCFF047BBR/@@download/ENCFF047BBR.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF057FSK bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 239286588 ENCODE Processing Pipeline bda0875eee8e8caad6440f429297ec68 https://www.encodeproject.org/files/ENCFF057FSK/@@download/ENCFF057FSK.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF253RIV bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 73789695 ENCODE Processing Pipeline 56bfdb7b3649b6bf16f9ca15b9e7e6a4 https://www.encodeproject.org/files/ENCFF253RIV/@@download/ENCFF253RIV.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF069XPC bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 3841623 ENCODE Processing Pipeline ba0bc46dd653ce1c83a96c61a451e4a4 https://www.encodeproject.org/files/ENCFF069XPC/@@download/ENCFF069XPC.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF495ANY bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 4975825 ENCODE Processing Pipeline 935ad3fd6961cc22376e52f8c68b211b https://www.encodeproject.org/files/ENCFF495ANY/@@download/ENCFF495ANY.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF062OIR bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 157831401 ENCODE Processing Pipeline f66734e0d850a6fb509da93f0590cb5d https://www.encodeproject.org/files/ENCFF062OIR/@@download/ENCFF062OIR.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF322MQW bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 435924715 ENCODE Processing Pipeline 17e03989a651a2968e3928e34e47c793 https://www.encodeproject.org/files/ENCFF322MQW/@@download/ENCFF322MQW.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF607KXD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF836XKX 321649 ENCODE Processing Pipeline 87aefc96f6ac59199fa56807ba05c89a https://www.encodeproject.org/files/ENCFF607KXD/@@download/ENCFF607KXD.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF285ZSS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF863CTN 444247 ENCODE Processing Pipeline dc76dbdc79738edadc3fd573d2dfedfe https://www.encodeproject.org/files/ENCFF285ZSS/@@download/ENCFF285ZSS.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF498ANJ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF307SFD 10196722 ENCODE Processing Pipeline 1bc4a97f73551c6b9ac3843c68f9c568 https://www.encodeproject.org/files/ENCFF498ANJ/@@download/ENCFF498ANJ.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF836XKX bed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069XPC, ENCFF307SFD, ENCFF419RSJ, ENCFF495ANY 104491 ENCODE Processing Pipeline a433b266da122be8547fcc8d0e9b6ee4 https://www.encodeproject.org/files/ENCFF836XKX/@@download/ENCFF836XKX.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF126ZJE bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 197850483 ENCODE Processing Pipeline e77bbfa5e3e1ae2871175eb8c2b0c738 https://www.encodeproject.org/files/ENCFF126ZJE/@@download/ENCFF126ZJE.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF307SFD bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 4509410 ENCODE Processing Pipeline 6270c2145566b84be009bd2c11fbf488 https://www.encodeproject.org/files/ENCFF307SFD/@@download/ENCFF307SFD.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF787JSJ bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 168115704 ENCODE Processing Pipeline 9d081605a38daf55dbfffa9b6f1837ae https://www.encodeproject.org/files/ENCFF787JSJ/@@download/ENCFF787JSJ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF133DTG bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF069XPC 9645942 ENCODE Processing Pipeline 85292457ce1011ea51a09f71266db863 https://www.encodeproject.org/files/ENCFF133DTG/@@download/ENCFF133DTG.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF179CKS bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF495ANY 13028663 ENCODE Processing Pipeline d18258dd5fd869f92f1de4f7342b893f https://www.encodeproject.org/files/ENCFF179CKS/@@download/ENCFF179CKS.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF863CTN bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069XPC, ENCFF307SFD, ENCFF419RSJ, ENCFF495ANY 165698 ENCODE Processing Pipeline 5ebd8271d1bcf979dfcda395ad16290f https://www.encodeproject.org/files/ENCFF863CTN/@@download/ENCFF863CTN.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF530FHC bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 158988558 ENCODE Processing Pipeline d938e2475249bf1d073dfd6611870ebd https://www.encodeproject.org/files/ENCFF530FHC/@@download/ENCFF530FHC.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF086IDD bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 199829785 ENCODE Processing Pipeline 0a4359c252f88a7e507d33a45e4214c6 https://www.encodeproject.org/files/ENCFF086IDD/@@download/ENCFF086IDD.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF868POL bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HRI 9649583 ENCODE Processing Pipeline 119c5329f7d946b069634aec64ad2a7d https://www.encodeproject.org/files/ENCFF868POL/@@download/ENCFF868POL.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF058AIB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF924GMH 319769 ENCODE Processing Pipeline 6727b01654bc5ebc6627619510125efc https://www.encodeproject.org/files/ENCFF058AIB/@@download/ENCFF058AIB.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF273ULT bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF136HKZ, ENCFF375HRI, ENCFF800PUH 174239 ENCODE Processing Pipeline cce4272ca16424b132c0f8a5bb7ad40f https://www.encodeproject.org/files/ENCFF273ULT/@@download/ENCFF273ULT.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF177YDP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF273ULT 462513 ENCODE Processing Pipeline 287b56c12402e51e8c3192f6ea0d3821 https://www.encodeproject.org/files/ENCFF177YDP/@@download/ENCFF177YDP.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF819EZZ bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 238641137 ENCODE Processing Pipeline 533db17c9e66f4c37a5624966a10468e https://www.encodeproject.org/files/ENCFF819EZZ/@@download/ENCFF819EZZ.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF136HKZ bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 4558146 ENCODE Processing Pipeline 3bb29edec50c3d5ead6524ef00531fc2 https://www.encodeproject.org/files/ENCFF136HKZ/@@download/ENCFF136HKZ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF375HRI bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 3843215 ENCODE Processing Pipeline c1ef6a2d148a9990c6f6a40e70d97e22 https://www.encodeproject.org/files/ENCFF375HRI/@@download/ENCFF375HRI.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF800PUH bed narrowPeak peaks and background as input for IDR ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 4982672 ENCODE Processing Pipeline 8f2e5abce60d73e97fac731163c281ca https://www.encodeproject.org/files/ENCFF800PUH/@@download/ENCFF800PUH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF405ZKS bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 430751943 ENCODE Processing Pipeline f8251d389af016fed2a057d5c6af4dc8 https://www.encodeproject.org/files/ENCFF405ZKS/@@download/ENCFF405ZKS.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF839AHQ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF800PUH 13026349 ENCODE Processing Pipeline f3b1001131b9058ee8bd875867331ac7 https://www.encodeproject.org/files/ENCFF839AHQ/@@download/ENCFF839AHQ.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF924GMH bed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF136HKZ, ENCFF375HRI, ENCFF800PUH 103886 ENCODE Processing Pipeline 73d6dbe8ae4dec93a5c8aa630e0e94ed https://www.encodeproject.org/files/ENCFF924GMH/@@download/ENCFF924GMH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF294FCP bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 168045662 ENCODE Processing Pipeline 86df5a941f07973bcd7de05e6acf5f37 https://www.encodeproject.org/files/ENCFF294FCP/@@download/ENCFF294FCP.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF669NOV bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 73887759 ENCODE Processing Pipeline 545dfef8c14d1c2ddfb5afa79b5a935b https://www.encodeproject.org/files/ENCFF669NOV/@@download/ENCFF669NOV.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF121QSH bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF136HKZ 10245090 ENCODE Processing Pipeline 249c71c14ea79a049ac43c1655bc7ec3 https://www.encodeproject.org/files/ENCFF121QSH/@@download/ENCFF121QSH.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF846FJT fastq reads ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 1 75 single-ended 1821679397 Bradley Bernstein, Broad ba80ff1718093989065132a14e3ec1f9 SRA:SRR6213229 https://www.encodeproject.org/files/ENCFF846FJT/@@download/ENCFF846FJT.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released ENCFF533CYJ fastq reads ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 1 76 single-ended 1248183709 Bradley Bernstein, Broad 77837bd778c3ad41cad6955656a38367 SRA:SRR6213228 https://www.encodeproject.org/files/ENCFF533CYJ/@@download/ENCFF533CYJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released ENCFF769EMA bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF643CGH 1509248398 ENCODE Processing Pipeline 9a6cadf4e410cf37e0680ea9c02e4187 https://www.encodeproject.org/files/ENCFF769EMA/@@download/ENCFF769EMA.bam GRCh38 released ENCFF312DFB bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF807MUK 1509575426 ENCODE Processing Pipeline a1cef67d583c77280bf939ece3836c78 https://www.encodeproject.org/files/ENCFF312DFB/@@download/ENCFF312DFB.bam hg19 released ENCFF793CEU bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF643CGH, ENCFF846FJT 2175631493 ENCODE Processing Pipeline 7038ea0c0036f16d8354a01c3fd6e8f1 https://www.encodeproject.org/files/ENCFF793CEU/@@download/ENCFF793CEU.bam GRCh38 released ENCFF909TCN bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF807MUK, ENCFF846FJT 2173164044 ENCODE Processing Pipeline 019fa2274d091b74329f1c0ea5804933 https://www.encodeproject.org/files/ENCFF909TCN/@@download/ENCFF909TCN.bam hg19 released ENCFF954FIU bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF643CGH, ENCFF846FJT 1704738337 ENCODE Processing Pipeline 75d531eab82fb3ff2060d909ad641be8 https://www.encodeproject.org/files/ENCFF954FIU/@@download/ENCFF954FIU.bam GRCh38 released ENCFF122XZP bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF643CGH 1196705660 ENCODE Processing Pipeline c736da90a86f8fabf13154f5f775bf4b https://www.encodeproject.org/files/ENCFF122XZP/@@download/ENCFF122XZP.bam GRCh38 released ENCFF839OMX bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF807MUK 1190867476 ENCODE Processing Pipeline 6f11fdef0995fb297e1fac3f7949a7c4 https://www.encodeproject.org/files/ENCFF839OMX/@@download/ENCFF839OMX.bam hg19 released ENCFF432IXF bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF807MUK, ENCFF846FJT 1698277334 ENCODE Processing Pipeline 819ffa3371289e53016648ce360cd402 https://www.encodeproject.org/files/ENCFF432IXF/@@download/ENCFF432IXF.bam hg19 released ENCFF685TSM bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 1104629499 ENCODE Processing Pipeline daf1c25214fc7d97ec3201a1e283dd27 https://www.encodeproject.org/files/ENCFF685TSM/@@download/ENCFF685TSM.bigWig hg19 released ENCFF815UDU bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1381096531 ENCODE Processing Pipeline c82b3a99a64c4834f34834117d4fd14b https://www.encodeproject.org/files/ENCFF815UDU/@@download/ENCFF815UDU.bigWig GRCh38 released ENCFF265ZCW bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1043046505 ENCODE Processing Pipeline b96475d39564c28f4519782b774b9632 https://www.encodeproject.org/files/ENCFF265ZCW/@@download/ENCFF265ZCW.bigWig GRCh38 released ENCFF273AOL bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 1059623032 ENCODE Processing Pipeline 29bb27ad3e6161b2b830a3c5c86e68ea https://www.encodeproject.org/files/ENCFF273AOL/@@download/ENCFF273AOL.bigWig hg19 released ENCFF302SFE bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 1000639015 ENCODE Processing Pipeline 4bc75cc52dc32172c194e3c44915253e https://www.encodeproject.org/files/ENCFF302SFE/@@download/ENCFF302SFE.bigWig GRCh38 released ENCFF451XIK bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1167587869 ENCODE Processing Pipeline 55d389a2f5b298652d328dff25c10413 https://www.encodeproject.org/files/ENCFF451XIK/@@download/ENCFF451XIK.bigWig hg19 released ENCFF638GYB bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1057459341 ENCODE Processing Pipeline 932d4bab041c474a9ce837bf8d081a3e https://www.encodeproject.org/files/ENCFF638GYB/@@download/ENCFF638GYB.bigWig GRCh38 released ENCFF541WVD bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1006935831 ENCODE Processing Pipeline 07c4be584bb59f749b738fadc3ce3528 https://www.encodeproject.org/files/ENCFF541WVD/@@download/ENCFF541WVD.bigWig hg19 released ENCFF013RIS bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 868714763 ENCODE Processing Pipeline 1e121db6f7cbb72481949782f8960584 https://www.encodeproject.org/files/ENCFF013RIS/@@download/ENCFF013RIS.bigWig hg19 released ENCFF675TUL bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1446455589 ENCODE Processing Pipeline 9ee050fe8a99674522a853861b43afa9 https://www.encodeproject.org/files/ENCFF675TUL/@@download/ENCFF675TUL.bigWig hg19 released ENCFF116DRU bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF080QIA 13634548 ENCODE Processing Pipeline d34abf3cab4dfb240820ba752eb4c500 https://www.encodeproject.org/files/ENCFF116DRU/@@download/ENCFF116DRU.bigBed hg19 released ENCFF107UHX bed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF080QIA, ENCFF436WQE, ENCFF501TBE 29592 ENCODE Processing Pipeline 9a585121f338bdd33ad5fbf971a5b1a3 https://www.encodeproject.org/files/ENCFF107UHX/@@download/ENCFF107UHX.bed.gz hg19 released ENCFF064AED bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 868030760 ENCODE Processing Pipeline 5377628ef3563c229cd5e8cc6585cdb2 https://www.encodeproject.org/files/ENCFF064AED/@@download/ENCFF064AED.bigWig GRCh38 released ENCFF159SQB bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1393899627 ENCODE Processing Pipeline 1f4e2d041de299606fc7f7856878a167 https://www.encodeproject.org/files/ENCFF159SQB/@@download/ENCFF159SQB.bigWig GRCh38 released ENCFF180RQQ bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 5891608 ENCODE Processing Pipeline 637632ee11138bbb6f47d28dc5619d5e https://www.encodeproject.org/files/ENCFF180RQQ/@@download/ENCFF180RQQ.bed.gz GRCh38 released ENCFF758YRK bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 6868439 ENCODE Processing Pipeline a517efb880bfb6d93a65ffc51cbb7ba3 https://www.encodeproject.org/files/ENCFF758YRK/@@download/ENCFF758YRK.bed.gz GRCh38 released ENCFF501TBE bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6383565 ENCODE Processing Pipeline aad3a9b2193706c9236a2257ad2da9d9 https://www.encodeproject.org/files/ENCFF501TBE/@@download/ENCFF501TBE.bed.gz hg19 released ENCFF620SXG bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF758YRK 13443725 ENCODE Processing Pipeline 8778cb8ca59216f5c07278447b1e7870 https://www.encodeproject.org/files/ENCFF620SXG/@@download/ENCFF620SXG.bigBed GRCh38 released ENCFF049JNL bigBed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF221BCO 112133 ENCODE Processing Pipeline 49a7a55679a4f4a22f2cdac25a93088f https://www.encodeproject.org/files/ENCFF049JNL/@@download/ENCFF049JNL.bigBed GRCh38 released ENCFF974QXE bigBed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF645CEC 94418 ENCODE Processing Pipeline 9bc37da3fa04bfb3fd6149b0f83ee977 https://www.encodeproject.org/files/ENCFF974QXE/@@download/ENCFF974QXE.bigBed hg19 released ENCFF052HOZ bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 6198922 ENCODE Processing Pipeline 113dd47a9694ccd079933e44c2309ce9 https://www.encodeproject.org/files/ENCFF052HOZ/@@download/ENCFF052HOZ.bed.gz GRCh38 released ENCFF080QIA bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 5961445 ENCODE Processing Pipeline 20bff0afdb2ea318f0f997bbaf9d0d9e https://www.encodeproject.org/files/ENCFF080QIA/@@download/ENCFF080QIA.bed.gz hg19 released ENCFF303CTU bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF180RQQ 11507243 ENCODE Processing Pipeline 596e9d33b7256fe703eb03f9e7c0d216 https://www.encodeproject.org/files/ENCFF303CTU/@@download/ENCFF303CTU.bigBed GRCh38 released ENCFF645CEC bed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF080QIA, ENCFF436WQE, ENCFF501TBE 25236 ENCODE Processing Pipeline 19bac53993ac51017d239f2de83e322f https://www.encodeproject.org/files/ENCFF645CEC/@@download/ENCFF645CEC.bed.gz hg19 released ENCFF436WQE bed narrowPeak peaks and background as input for IDR ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6973407 ENCODE Processing Pipeline 5b81f1fade7273db8fe1dc650c74d3dd https://www.encodeproject.org/files/ENCFF436WQE/@@download/ENCFF436WQE.bed.gz hg19 released ENCFF634QYI bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF052HOZ 13428770 ENCODE Processing Pipeline df7b449f00b8d94fd55d65612f089e20 https://www.encodeproject.org/files/ENCFF634QYI/@@download/ENCFF634QYI.bigBed GRCh38 released ENCFF937OYR bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF501TBE 13343344 ENCODE Processing Pipeline 69574d32af05ef494983bc3a89c6725b https://www.encodeproject.org/files/ENCFF937OYR/@@download/ENCFF937OYR.bigBed hg19 released ENCFF892XTI bigBed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF299UPZ 102434 ENCODE Processing Pipeline 651eba8d8d6750c4c7d47643948a2600 https://www.encodeproject.org/files/ENCFF892XTI/@@download/ENCFF892XTI.bigBed GRCh38 released ENCFF535GUS bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF436WQE 13352255 ENCODE Processing Pipeline e3d71ad6b25cb8bdf2b73dd81e96ee1d https://www.encodeproject.org/files/ENCFF535GUS/@@download/ENCFF535GUS.bigBed hg19 released ENCFF221BCO bed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF052HOZ, ENCFF180RQQ, ENCFF419RSJ, ENCFF758YRK 26704 ENCODE Processing Pipeline fcb0e6cb72d4f737207c7deb6d7214dd https://www.encodeproject.org/files/ENCFF221BCO/@@download/ENCFF221BCO.bed.gz GRCh38 released ENCFF299UPZ bed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF052HOZ, ENCFF180RQQ, ENCFF419RSJ, ENCFF758YRK 30119 ENCODE Processing Pipeline 47faeea4dfbd9f073d7e0ddd5c55afff https://www.encodeproject.org/files/ENCFF299UPZ/@@download/ENCFF299UPZ.bed.gz GRCh38 released ENCFF895ZRV bigBed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF107UHX 101310 ENCODE Processing Pipeline 94c12fe1be0f91722edee92f824205ed https://www.encodeproject.org/files/ENCFF895ZRV/@@download/ENCFF895ZRV.bigBed hg19 released ENCFF000WFW bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGD 351434930 Michael Snyder, Stanford ad6c1639ab12b9e7a339f44abab9b5f3 https://www.encodeproject.org/files/ENCFF000WFW/@@download/ENCFF000WFW.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFX bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFS 3538291 Michael Snyder, Stanford 2e69af20bb1ce6247c54f6bb7c9b2ac9 https://www.encodeproject.org/files/ENCFF000WFX/@@download/ENCFF000WFX.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFY bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGE 355250413 Michael Snyder, Stanford 8b91130f9cca474b873481c37f998298 https://www.encodeproject.org/files/ENCFF000WFY/@@download/ENCFF000WFY.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WGA bigWig signal ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 432757124 Michael Snyder, Stanford 80df6c8216b414e8d95ce461caf6b6f9 https://www.encodeproject.org/files/ENCFF000WGA/@@download/ENCFF000WGA.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000WGD fastq reads ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 927422795 Michael Snyder, Stanford bfa434e4db6870c4141de3cbacbf3337 https://www.encodeproject.org/files/ENCFF000WGD/@@download/ENCFF000WGD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WGE fastq reads ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 933641884 Michael Snyder, Stanford e902b515ee3de1842faf708c3a0f69e2 https://www.encodeproject.org/files/ENCFF000WGE/@@download/ENCFF000WGE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001VFS bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1468202 Michael Snyder, Stanford c6eff4ad100a09e63982e50993eea18d https://www.encodeproject.org/files/ENCFF001VFS/@@download/ENCFF001VFS.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CPU bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 358444 ENCODE Consortium Analysis Working Group dceffa9354c6b6713497fa7e0050fd09 https://www.encodeproject.org/files/ENCFF002CPU/@@download/ENCFF002CPU.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF169RDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPU 883496 ENCODE Consortium 7ac8db304670ca09b4ad2dd0a4c57020 https://www.encodeproject.org/files/ENCFF169RDM/@@download/ENCFF169RDM.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF616FGG bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF643CGH 1004029591 ENCODE Processing Pipeline 7de446541291a3e9c2067309c4ef65df https://www.encodeproject.org/files/ENCFF616FGG/@@download/ENCFF616FGG.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF042NGB bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF643CGH 1000133729 ENCODE Processing Pipeline bf70fd6d45797f79980150039dd083a0 https://www.encodeproject.org/files/ENCFF042NGB/@@download/ENCFF042NGB.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF070YVD bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF643CGH 554273499 ENCODE Processing Pipeline d9e23a315ebf032c2e84f19c3aafdeac https://www.encodeproject.org/files/ENCFF070YVD/@@download/ENCFF070YVD.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF473BSK bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF643CGH 549214024 ENCODE Processing Pipeline 0cbee7214e53e253cc22ae240632aaca https://www.encodeproject.org/files/ENCFF473BSK/@@download/ENCFF473BSK.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF366GBN bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF807MUK 1000545219 ENCODE Processing Pipeline 09087ec299038f84b4610f2679d1de63 https://www.encodeproject.org/files/ENCFF366GBN/@@download/ENCFF366GBN.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF775OFL bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF807MUK 996297970 ENCODE Processing Pipeline 8d8ee1f9d3e5f4609ef62c5bd2014d53 https://www.encodeproject.org/files/ENCFF775OFL/@@download/ENCFF775OFL.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF172BTO bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF807MUK 547811885 ENCODE Processing Pipeline 9eddd43db461209cd810a2c252c00378 https://www.encodeproject.org/files/ENCFF172BTO/@@download/ENCFF172BTO.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF417TCH bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF807MUK 553380359 ENCODE Processing Pipeline 8c4e535a29272c9bc5742e56f5dab91f https://www.encodeproject.org/files/ENCFF417TCH/@@download/ENCFF417TCH.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF384TEU bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 198943560 ENCODE Processing Pipeline 82cc29cb5e0e808eedd05582c574f0a9 https://www.encodeproject.org/files/ENCFF384TEU/@@download/ENCFF384TEU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF260JEF bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 192735828 ENCODE Processing Pipeline 11be8b5d2866abff0d49d0f43aab623b https://www.encodeproject.org/files/ENCFF260JEF/@@download/ENCFF260JEF.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF528EPB bed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF317FDH, ENCFF686FNX, ENCFF792ZIP 143025 ENCODE Processing Pipeline 3f618a697af113be4d5edb9d7305f227 https://www.encodeproject.org/files/ENCFF528EPB/@@download/ENCFF528EPB.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF809ZOV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF277VDY 368808 ENCODE Processing Pipeline 782f3733b490029fe4f85ddd82bb96ee https://www.encodeproject.org/files/ENCFF809ZOV/@@download/ENCFF809ZOV.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF692LUA bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 224765102 ENCODE Processing Pipeline 527baf6ee0663a1209f4903b8d7fa65b https://www.encodeproject.org/files/ENCFF692LUA/@@download/ENCFF692LUA.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF460ZWU bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 78773939 ENCODE Processing Pipeline 409d4705d196bd6928cbdb1b6fa354a6 https://www.encodeproject.org/files/ENCFF460ZWU/@@download/ENCFF460ZWU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF526WWD bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 403694096 ENCODE Processing Pipeline 8ba3cfd66d2d8cd19909af1acfe9d07b https://www.encodeproject.org/files/ENCFF526WWD/@@download/ENCFF526WWD.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF686FNX bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 4325250 ENCODE Processing Pipeline 93d52258ba022f5ef861b11690044ca5 https://www.encodeproject.org/files/ENCFF686FNX/@@download/ENCFF686FNX.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF921MLY bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF686FNX 10111401 ENCODE Processing Pipeline 6e6ee0a63ca36961168753a528792023 https://www.encodeproject.org/files/ENCFF921MLY/@@download/ENCFF921MLY.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF814JBL bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF317FDH 13024955 ENCODE Processing Pipeline f838ec69a8ab6eae34e8db0347b46613 https://www.encodeproject.org/files/ENCFF814JBL/@@download/ENCFF814JBL.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF320STF bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 184329480 ENCODE Processing Pipeline 02a7f102fc1f41b03ea62cdc820c0e7b https://www.encodeproject.org/files/ENCFF320STF/@@download/ENCFF320STF.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF739UCO bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF792ZIP 10165152 ENCODE Processing Pipeline c69c477b3ab67dd7356bc337c3fb731f https://www.encodeproject.org/files/ENCFF739UCO/@@download/ENCFF739UCO.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF277VDY bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF317FDH, ENCFF686FNX, ENCFF792ZIP 154015 ENCODE Processing Pipeline 5e7d9db0cbef87de4528e14c15dfb940 https://www.encodeproject.org/files/ENCFF277VDY/@@download/ENCFF277VDY.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF792ZIP bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 4381457 ENCODE Processing Pipeline 1a77a8e34772bfb1b886570b27b199b9 https://www.encodeproject.org/files/ENCFF792ZIP/@@download/ENCFF792ZIP.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF317FDH bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 5307806 ENCODE Processing Pipeline 19115d9736cc13c2760296a8d835127a https://www.encodeproject.org/files/ENCFF317FDH/@@download/ENCFF317FDH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF354MYM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF528EPB 347639 ENCODE Processing Pipeline f0551ae26c793d11e3160d87ff49036f https://www.encodeproject.org/files/ENCFF354MYM/@@download/ENCFF354MYM.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF460UDO bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 78843675 ENCODE Processing Pipeline 5a7488956f4f9ac78152b09101111159 https://www.encodeproject.org/files/ENCFF460UDO/@@download/ENCFF460UDO.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF429UBV bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF234QBV 13023000 ENCODE Processing Pipeline 143f6376610f87892f397acf4ca50b82 https://www.encodeproject.org/files/ENCFF429UBV/@@download/ENCFF429UBV.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF490RLJ bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 185418517 ENCODE Processing Pipeline a61420444291676ccbe68fdb487628eb https://www.encodeproject.org/files/ENCFF490RLJ/@@download/ENCFF490RLJ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF262WAX bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 226102840 ENCODE Processing Pipeline 213848f91e5545e5b9595c038d375562 https://www.encodeproject.org/files/ENCFF262WAX/@@download/ENCFF262WAX.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF234QBV bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 5306606 ENCODE Processing Pipeline 656a052b6d430c3107717076229f5cd3 https://www.encodeproject.org/files/ENCFF234QBV/@@download/ENCFF234QBV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF460LVD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF679UWZ 351438 ENCODE Processing Pipeline f794d867826837e88bd23f87df355e72 https://www.encodeproject.org/files/ENCFF460LVD/@@download/ENCFF460LVD.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF597JNS bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 198999704 ENCODE Processing Pipeline 9143362c8a743843fef31f213a6fd8d0 https://www.encodeproject.org/files/ENCFF597JNS/@@download/ENCFF597JNS.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF756TZR bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 192428280 ENCODE Processing Pipeline 01272f4db346ce333a8c1bc5a94dbb6f https://www.encodeproject.org/files/ENCFF756TZR/@@download/ENCFF756TZR.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF112DTU bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 4386985 ENCODE Processing Pipeline 78ee7ab6018562343915da06b5f295c0 https://www.encodeproject.org/files/ENCFF112DTU/@@download/ENCFF112DTU.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF016PPO bed narrowPeak peaks and background as input for IDR ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 4329439 ENCODE Processing Pipeline 8bb822f22b9f352dd2e893302b80d30c https://www.encodeproject.org/files/ENCFF016PPO/@@download/ENCFF016PPO.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF902KWM bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF112DTU 10161885 ENCODE Processing Pipeline 0fb8184d30ce86bd57f9f4e6b8884e69 https://www.encodeproject.org/files/ENCFF902KWM/@@download/ENCFF902KWM.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF728KTY bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF016PPO 10132061 ENCODE Processing Pipeline 25d735d3179c4e9fe0b2134a0cddee1b https://www.encodeproject.org/files/ENCFF728KTY/@@download/ENCFF728KTY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF483PQP bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 407905806 ENCODE Processing Pipeline 574336cac8506aa71bbfa9f05c1de020 https://www.encodeproject.org/files/ENCFF483PQP/@@download/ENCFF483PQP.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF679UWZ bed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016PPO, ENCFF112DTU, ENCFF234QBV, ENCFF419RSJ 146062 ENCODE Processing Pipeline 05eae9fc6a999168fabc4577bb92ef9d https://www.encodeproject.org/files/ENCFF679UWZ/@@download/ENCFF679UWZ.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF514DDI bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016PPO, ENCFF112DTU, ENCFF234QBV, ENCFF419RSJ 166606 ENCODE Processing Pipeline e2503b1b48664f49415ce2ae99a48770 https://www.encodeproject.org/files/ENCFF514DDI/@@download/ENCFF514DDI.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF724AGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF514DDI 387905 ENCODE Processing Pipeline 66e0f610b7bb3473bf3ea08fdfd46842 https://www.encodeproject.org/files/ENCFF724AGT/@@download/ENCFF724AGT.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OED bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OEQ 892226157 Richard Myers, HAIB aeada3abce8cc57c075fb31069080ca0 https://www.encodeproject.org/files/ENCFF000OED/@@download/ENCFF000OED.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000OEE bigBed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYW 171687 Richard Myers, HAIB 456fd498a4b20e093d89b62441e2947d https://www.encodeproject.org/files/ENCFF000OEE/@@download/ENCFF000OEE.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000OEF bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEP 819155193 Richard Myers, HAIB 119f2cf5aec82dbe306c1b609b6d77a2 https://www.encodeproject.org/files/ENCFF000OEF/@@download/ENCFF000OEF.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000OEG bigBed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYX 281118 Richard Myers, HAIB bd3c29a2485e1ec120eeb68e320e53b7 https://www.encodeproject.org/files/ENCFF000OEG/@@download/ENCFF000OEG.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000OEI bigWig raw signal ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 22559761 Richard Myers, HAIB a28ec90d8829c39f3b9103b44922db7f https://www.encodeproject.org/files/ENCFF000OEI/@@download/ENCFF000OEI.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF000OEK bigWig raw signal ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 22696639 Richard Myers, HAIB 17b526ddaf54334e80c0871d59ae8936 https://www.encodeproject.org/files/ENCFF000OEK/@@download/ENCFF000OEK.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF000OEP fastq reads ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1123721883 Richard Myers, HAIB aa75c9e8271ce2b71c2943ead853c9b9 https://www.encodeproject.org/files/ENCFF000OEP/@@download/ENCFF000OEP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000OEQ fastq reads ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1470421057 Richard Myers, HAIB 949de3ab0f232844e8bd56876ee612fb https://www.encodeproject.org/files/ENCFF000OEQ/@@download/ENCFF000OEQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF001TYW bed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 72035 Richard Myers, HAIB af0609261bb0e9fb86044137c1eb6b74 https://www.encodeproject.org/files/ENCFF001TYW/@@download/ENCFF001TYW.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF001TYX bed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 113392 Richard Myers, HAIB 35f89ef2f247fddc9d82ba3728a3da0c https://www.encodeproject.org/files/ENCFF001TYX/@@download/ENCFF001TYX.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF002CHU bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 99895 ENCODE Consortium Analysis Working Group c85b1e6990282d9fb581b19de053c875 https://www.encodeproject.org/files/ENCFF002CHU/@@download/ENCFF002CHU.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF254RCY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHU 280402 ENCODE Consortium 8c55a7078cf699ec072484fbbb9c1cdf https://www.encodeproject.org/files/ENCFF254RCY/@@download/ENCFF254RCY.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF915GLM bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF643CGH 1312498846 ENCODE Processing Pipeline 8af36b5b7eee492b431ce960f37a85e1 https://www.encodeproject.org/files/ENCFF915GLM/@@download/ENCFF915GLM.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF707RRY bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF643CGH 437501433 ENCODE Processing Pipeline df57856fa6dc8dfbea8eb865eb2b5a21 https://www.encodeproject.org/files/ENCFF707RRY/@@download/ENCFF707RRY.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF561EJD bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF643CGH 1719361830 ENCODE Processing Pipeline 9d8785b29a06e79d38e44cfe064a69b2 https://www.encodeproject.org/files/ENCFF561EJD/@@download/ENCFF561EJD.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF971KJA bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF643CGH 499355998 ENCODE Processing Pipeline 468a98865066dc01460b7b47aa4acaa3 https://www.encodeproject.org/files/ENCFF971KJA/@@download/ENCFF971KJA.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF549IYK bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF807MUK 1320019291 ENCODE Processing Pipeline db21038167e30341f11a987972172ec1 https://www.encodeproject.org/files/ENCFF549IYK/@@download/ENCFF549IYK.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF797IAR bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF807MUK 431191759 ENCODE Processing Pipeline 24203cd7cd0e3c4610b17fba128869fd https://www.encodeproject.org/files/ENCFF797IAR/@@download/ENCFF797IAR.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF579QFZ bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF807MUK 1717382506 ENCODE Processing Pipeline 73005236c9d3fb4357f0cf20a4b63aba https://www.encodeproject.org/files/ENCFF579QFZ/@@download/ENCFF579QFZ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF060XMV bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF807MUK 492749729 ENCODE Processing Pipeline 88eba33a2c5c1b551d5388e818528b52 https://www.encodeproject.org/files/ENCFF060XMV/@@download/ENCFF060XMV.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF511YCS bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 724685886 ENCODE Processing Pipeline ae72d2a66dbcde4b4ccb87f3398f25c9 https://www.encodeproject.org/files/ENCFF511YCS/@@download/ENCFF511YCS.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF464JUI bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 242483206 ENCODE Processing Pipeline 0a036e550e70470c9019fa8d3a162e34 https://www.encodeproject.org/files/ENCFF464JUI/@@download/ENCFF464JUI.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF516YJI bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 393998565 ENCODE Processing Pipeline 77e4c1d42fc7a9d6d4274e01a7c9c291 https://www.encodeproject.org/files/ENCFF516YJI/@@download/ENCFF516YJI.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF256QZB bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 429456870 ENCODE Processing Pipeline 365578239fdd730acfaaf994ffeaff5a https://www.encodeproject.org/files/ENCFF256QZB/@@download/ENCFF256QZB.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF916XGL bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 566890076 ENCODE Processing Pipeline 46ac46ea811b297c859bd5e7b8f57c24 https://www.encodeproject.org/files/ENCFF916XGL/@@download/ENCFF916XGL.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF968RDY bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF237JOK 11300610 ENCODE Processing Pipeline 698228ca8e52b33d2f930b50e9859422 https://www.encodeproject.org/files/ENCFF968RDY/@@download/ENCFF968RDY.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF233IWJ bed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF205XAJ, ENCFF237JOK, ENCFF419RSJ, ENCFF736XQD 74869 ENCODE Processing Pipeline dd9f0df797ed5c259ae7b275edf8ceec https://www.encodeproject.org/files/ENCFF233IWJ/@@download/ENCFF233IWJ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF358GKL bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 247104097 ENCODE Processing Pipeline 1b93d9300641bf92ac3bfb9b4918aba9 https://www.encodeproject.org/files/ENCFF358GKL/@@download/ENCFF358GKL.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF205XAJ bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 3559698 ENCODE Processing Pipeline d382d68d0f2e935d0d8f7f0f311131bd https://www.encodeproject.org/files/ENCFF205XAJ/@@download/ENCFF205XAJ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF502LCC bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF205XAJ 7799825 ENCODE Processing Pipeline cb5a5f064e5a728c3e01413e377fddef https://www.encodeproject.org/files/ENCFF502LCC/@@download/ENCFF502LCC.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF321JQN bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF736XQD 9965829 ENCODE Processing Pipeline 97d098defc0948a7fb14a3d9b1d3c8fd https://www.encodeproject.org/files/ENCFF321JQN/@@download/ENCFF321JQN.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF864TFH bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF205XAJ, ENCFF237JOK, ENCFF419RSJ, ENCFF736XQD 94660 ENCODE Processing Pipeline a797ab5b6a058667349ed9bea424ca00 https://www.encodeproject.org/files/ENCFF864TFH/@@download/ENCFF864TFH.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF863SSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF864TFH 206014 ENCODE Processing Pipeline 2df4d093e1098a36598fcb76b23f13cf https://www.encodeproject.org/files/ENCFF863SSI/@@download/ENCFF863SSI.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF736XQD bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 3928333 ENCODE Processing Pipeline d6ac3bc8e0be5ffbff266f42f4b65168 https://www.encodeproject.org/files/ENCFF736XQD/@@download/ENCFF736XQD.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF237JOK bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 4925732 ENCODE Processing Pipeline 1a78d22d95caa903506d9a554383fda7 https://www.encodeproject.org/files/ENCFF237JOK/@@download/ENCFF237JOK.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF813HTT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF233IWJ 174015 ENCODE Processing Pipeline a7611427f90e5efe754e7a2599267ec5 https://www.encodeproject.org/files/ENCFF813HTT/@@download/ENCFF813HTT.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF542TXL bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 478834077 ENCODE Processing Pipeline 3f093369c6bf7943f1650c9e8aaeae83 https://www.encodeproject.org/files/ENCFF542TXL/@@download/ENCFF542TXL.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF771CBA bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 4955482 ENCODE Processing Pipeline 4a4b5d86fdcd0b65a5f92c4f76811887 https://www.encodeproject.org/files/ENCFF771CBA/@@download/ENCFF771CBA.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF606WUV bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF491NVT, ENCFF557TKJ, ENCFF771CBA 91820 ENCODE Processing Pipeline f5cc0ab0fab5aa90cb4d068d46f09c70 https://www.encodeproject.org/files/ENCFF606WUV/@@download/ENCFF606WUV.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF309MCP bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 363934188 ENCODE Processing Pipeline e13c3f586997417f4834aab9f803f070 https://www.encodeproject.org/files/ENCFF309MCP/@@download/ENCFF309MCP.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF697HLB bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 243222130 ENCODE Processing Pipeline 69ddea4049f3315f621b48c715c2a500 https://www.encodeproject.org/files/ENCFF697HLB/@@download/ENCFF697HLB.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF119WHC bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 246698015 ENCODE Processing Pipeline 05e92dc7b400eec86f4f425607889c40 https://www.encodeproject.org/files/ENCFF119WHC/@@download/ENCFF119WHC.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF491NVT bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 3572166 ENCODE Processing Pipeline d1a1faae16d72d91b8f0943e4b26cd96 https://www.encodeproject.org/files/ENCFF491NVT/@@download/ENCFF491NVT.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF808EYW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163EZT 190401 ENCODE Processing Pipeline 34aaa695d20c08fe1f2a59fb5ade366c https://www.encodeproject.org/files/ENCFF808EYW/@@download/ENCFF808EYW.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF163EZT bed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF491NVT, ENCFF557TKJ, ENCFF771CBA 70687 ENCODE Processing Pipeline a2b8141773a111b3ac493d81a27a64ce https://www.encodeproject.org/files/ENCFF163EZT/@@download/ENCFF163EZT.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF460HSY bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 741176979 ENCODE Processing Pipeline 8a7bfc62e259d24f8f14c172bcbf24f9 https://www.encodeproject.org/files/ENCFF460HSY/@@download/ENCFF460HSY.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF371AOB bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 567671050 ENCODE Processing Pipeline 291401d9143f4025148eac67526e609e https://www.encodeproject.org/files/ENCFF371AOB/@@download/ENCFF371AOB.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF927AFI bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF557TKJ 9967053 ENCODE Processing Pipeline f7fd83e354cfc41d5b1a18fe251cb00d https://www.encodeproject.org/files/ENCFF927AFI/@@download/ENCFF927AFI.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF557TKJ bed narrowPeak peaks and background as input for IDR ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 3926265 ENCODE Processing Pipeline 050cc271a271744bf736fd530aad10d0 https://www.encodeproject.org/files/ENCFF557TKJ/@@download/ENCFF557TKJ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF961ODB bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF491NVT 7831384 ENCODE Processing Pipeline f45633dac72bc3768fc642b7c092f0ad https://www.encodeproject.org/files/ENCFF961ODB/@@download/ENCFF961ODB.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF915FJO bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF771CBA 11450497 ENCODE Processing Pipeline 93f305bd3e3b2a730b5e62c2748a7eec https://www.encodeproject.org/files/ENCFF915FJO/@@download/ENCFF915FJO.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF753NNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF606WUV 221412 ENCODE Processing Pipeline b1d602b55fb7f599e544a84a058318ed https://www.encodeproject.org/files/ENCFF753NNI/@@download/ENCFF753NNI.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample severe bottlenecking ENCFF000ARG bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000ARV 484522410 Bradley Bernstein, Broad 881c311f387465059bace19e517bf47c https://www.encodeproject.org/files/ENCFF000ARG/@@download/ENCFF000ARG.bam hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF000ARH bigBed broadPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SUB 1825957 Bradley Bernstein, Broad 88901f9349bbf52f05456bc7d8858730 https://www.encodeproject.org/files/ENCFF000ARH/@@download/ENCFF000ARH.bigBed hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF000ARI bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000ARP 945607244 Bradley Bernstein, Broad d53da79ce1f1927b77a938288b758180 https://www.encodeproject.org/files/ENCFF000ARI/@@download/ENCFF000ARI.bam hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF000ARJ bigWig signal ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 626202027 Bradley Bernstein, Broad 9bfe3dff371df0ee25af4f8bff093556 https://www.encodeproject.org/files/ENCFF000ARJ/@@download/ENCFF000ARJ.bigWig hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from insufficient read depth ENCFF000ARP fastq reads ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 1052264612 Bradley Bernstein, Broad 134e6a28cd92c74bae6976f124d6bca8 https://www.encodeproject.org/files/ENCFF000ARP/@@download/ENCFF000ARP.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000ARO/ released mixed read lengths, low read length, inconsistent control read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF000ARV fastq reads ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 51 single-ended 811019691 Bradley Bernstein, Broad bf6d9d1682f4b31ac2304711cfa1e591 https://www.encodeproject.org/files/ENCFF000ARV/@@download/ENCFF000ARV.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ARK/ released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001SUB bed broadPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1021431 Bradley Bernstein, Broad e626948d9674dc6187dc88445178cff3 https://www.encodeproject.org/files/ENCFF001SUB/@@download/ENCFF001SUB.bed.gz hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from insufficient read depth ENCFF002CDP bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1005226 ENCODE Consortium Analysis Working Group 9c53d27a4d8c71629f8c1ebc059a8ff4 https://www.encodeproject.org/files/ENCFF002CDP/@@download/ENCFF002CDP.bed.gz hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth missing derived_from insufficient read depth ENCFF510RVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CDP 1943400 ENCODE Consortium d41ce3de62e161ebdc7a0385d796a246 https://www.encodeproject.org/files/ENCFF510RVH/@@download/ENCFF510RVH.bigBed hg19 archived mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF313NRK bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF643CGH 1365823579 ENCODE Processing Pipeline ed8bca188e179774581f9b6e8ca71091 https://www.encodeproject.org/files/ENCFF313NRK/@@download/ENCFF313NRK.bam GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF406XWF bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF807MUK 1361304018 ENCODE Processing Pipeline af3850e979fd3a39a70eda47ae4f1c35 https://www.encodeproject.org/files/ENCFF406XWF/@@download/ENCFF406XWF.bam hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF994NWU bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF643CGH 674838876 ENCODE Processing Pipeline 14e16f804db4dc14920d597b8d45095d https://www.encodeproject.org/files/ENCFF994NWU/@@download/ENCFF994NWU.bam GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF343LTM bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF807MUK 673867842 ENCODE Processing Pipeline ead9079d1e6f5453b309d6c681e3690f https://www.encodeproject.org/files/ENCFF343LTM/@@download/ENCFF343LTM.bam hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF598OOE bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF807MUK 752916583 ENCODE Processing Pipeline f446012c1907cdf514fc05fae76193db https://www.encodeproject.org/files/ENCFF598OOE/@@download/ENCFF598OOE.bam hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF389RQC bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF807MUK 285068500 ENCODE Processing Pipeline e623ee04d1664db184cc7db7c2583e26 https://www.encodeproject.org/files/ENCFF389RQC/@@download/ENCFF389RQC.bam hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF834CAH bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF643CGH 755390746 ENCODE Processing Pipeline dc8206eaa75467239e7290ec4e11c313 https://www.encodeproject.org/files/ENCFF834CAH/@@download/ENCFF834CAH.bam GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF538VCH bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF643CGH 285968431 ENCODE Processing Pipeline 1c010d4c6c46ecb766d37f9624be0102 https://www.encodeproject.org/files/ENCFF538VCH/@@download/ENCFF538VCH.bam GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF838AMT bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 242792142 ENCODE Processing Pipeline 24a3212ee08286fd19f4dc7be5ab9984 https://www.encodeproject.org/files/ENCFF838AMT/@@download/ENCFF838AMT.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF130BJM bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 130805565 ENCODE Processing Pipeline e94519a1c1395dc1f4af9927c15fe0e7 https://www.encodeproject.org/files/ENCFF130BJM/@@download/ENCFF130BJM.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF010MUF bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 129479053 ENCODE Processing Pipeline b5c2d208e5496ea8a3815e6d17814e66 https://www.encodeproject.org/files/ENCFF010MUF/@@download/ENCFF010MUF.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF302KUG bigBed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF536RGD 1110752 ENCODE Processing Pipeline 703ca8ff5c735e0df5a2fa7f6202dd52 https://www.encodeproject.org/files/ENCFF302KUG/@@download/ENCFF302KUG.bigBed GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF581COS bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 250641594 ENCODE Processing Pipeline 68da9d4ad32b37780265ecb0c61807fa https://www.encodeproject.org/files/ENCFF581COS/@@download/ENCFF581COS.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF356LIU bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 666122 ENCODE Processing Pipeline bec0a5b3954eadf15bf0e901b863b037 https://www.encodeproject.org/files/ENCFF356LIU/@@download/ENCFF356LIU.bed.gz GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF702ZKH bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 216184883 ENCODE Processing Pipeline b2cd3b33404632371fdebce010bb6692 https://www.encodeproject.org/files/ENCFF702ZKH/@@download/ENCFF702ZKH.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF600AKY bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF061OYK 6217264 ENCODE Processing Pipeline d4956e00d8bd2fba861b72680b75357d https://www.encodeproject.org/files/ENCFF600AKY/@@download/ENCFF600AKY.bigBed GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF194JIB bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF445FMQ 9636154 ENCODE Processing Pipeline 2c7b1ada873cbd76b31c11e6bfb0d9fb https://www.encodeproject.org/files/ENCFF194JIB/@@download/ENCFF194JIB.bigBed GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF536RGD bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 636383 ENCODE Processing Pipeline 9643da0f20e987d52fc4568c640658d6 https://www.encodeproject.org/files/ENCFF536RGD/@@download/ENCFF536RGD.bed.gz GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF061OYK bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 2585473 ENCODE Processing Pipeline 41baa215ec49aef1e5747b9f33303d33 https://www.encodeproject.org/files/ENCFF061OYK/@@download/ENCFF061OYK.bed.gz GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF933NTR bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 4477240 ENCODE Processing Pipeline 7d8c536acbb4c8108476c047daa42536 https://www.encodeproject.org/files/ENCFF933NTR/@@download/ENCFF933NTR.bed.gz GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF445FMQ bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 3995400 ENCODE Processing Pipeline ed460a311d46d8509cdf56b16d6bd74e https://www.encodeproject.org/files/ENCFF445FMQ/@@download/ENCFF445FMQ.bed.gz GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF182CAX bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF356LIU 1149951 ENCODE Processing Pipeline 113d6bb20eef3a06a9a56c1214e8b72a https://www.encodeproject.org/files/ENCFF182CAX/@@download/ENCFF182CAX.bigBed GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF279CYY bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 348454928 ENCODE Processing Pipeline 536e897b5e0c2503e57b58b32864400e https://www.encodeproject.org/files/ENCFF279CYY/@@download/ENCFF279CYY.bigWig GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF134SJJ bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF933NTR 10655964 ENCODE Processing Pipeline 3940e6a1797c6440ec9acdfd1ab358c8 https://www.encodeproject.org/files/ENCFF134SJJ/@@download/ENCFF134SJJ.bigBed GRCh38 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF952FQV bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 251801891 ENCODE Processing Pipeline 026ff163f785669da2d9d083c4d449fc https://www.encodeproject.org/files/ENCFF952FQV/@@download/ENCFF952FQV.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF218HFH bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 129412412 ENCODE Processing Pipeline 06174df8cd957e9884ee09c6aea04e13 https://www.encodeproject.org/files/ENCFF218HFH/@@download/ENCFF218HFH.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF629AAF bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 130375871 ENCODE Processing Pipeline bf2c47f751bcba6761f26e15ab707b05 https://www.encodeproject.org/files/ENCFF629AAF/@@download/ENCFF629AAF.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF797LSC bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 242749079 ENCODE Processing Pipeline 1c772ff1405dbe2a1755c3a0a3268ecc https://www.encodeproject.org/files/ENCFF797LSC/@@download/ENCFF797LSC.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF070TNA bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 215908902 ENCODE Processing Pipeline 4165e8e0d2c484b811ded97cb7226d85 https://www.encodeproject.org/files/ENCFF070TNA/@@download/ENCFF070TNA.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF364OXN bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 346464836 ENCODE Processing Pipeline 3dfec7813d4a7c50befcadac360c0ae8 https://www.encodeproject.org/files/ENCFF364OXN/@@download/ENCFF364OXN.bigWig hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF706QLS bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 2436987 ENCODE Processing Pipeline 989f9f01a47be649827afbe7613f9e79 https://www.encodeproject.org/files/ENCFF706QLS/@@download/ENCFF706QLS.bed.gz hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF934NEI bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 4005719 ENCODE Processing Pipeline 1f1ed3ead872ba5694af582f563d0d81 https://www.encodeproject.org/files/ENCFF934NEI/@@download/ENCFF934NEI.bed.gz hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF551KNM bed narrowPeak peaks and background as input for IDR ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 4456553 ENCODE Processing Pipeline d7abf752df6d52dac24a492114201c4a https://www.encodeproject.org/files/ENCFF551KNM/@@download/ENCFF551KNM.bed.gz hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF147OBX bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF551KNM 10622172 ENCODE Processing Pipeline 684059169cb3bb055ba7a07df6a326e6 https://www.encodeproject.org/files/ENCFF147OBX/@@download/ENCFF147OBX.bigBed hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF034SYS bigBed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF096AKZ 1097839 ENCODE Processing Pipeline 75eece520c3fdefd227f3f454ea23c90 https://www.encodeproject.org/files/ENCFF034SYS/@@download/ENCFF034SYS.bigBed hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF516BWL bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF934NEI 9648371 ENCODE Processing Pipeline 2cb0c1c598362f50ffda8926c6a1ca9f https://www.encodeproject.org/files/ENCFF516BWL/@@download/ENCFF516BWL.bigBed hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF923ZBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF833FTF 1133650 ENCODE Processing Pipeline d766bab06f02c6ab9d1b538de2b3ebc1 https://www.encodeproject.org/files/ENCFF923ZBP/@@download/ENCFF923ZBP.bigBed hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF006BGH bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF706QLS 4908646 ENCODE Processing Pipeline bb66c704fa0546a3715041de04abbdb3 https://www.encodeproject.org/files/ENCFF006BGH/@@download/ENCFF006BGH.bigBed hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF096AKZ bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 628471 ENCODE Processing Pipeline 2dde1f228dced8e1b51fc5a3d88c87dc https://www.encodeproject.org/files/ENCFF096AKZ/@@download/ENCFF096AKZ.bed.gz hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF833FTF bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 655789 ENCODE Processing Pipeline 265cfe705263baae508111a4114aab61 https://www.encodeproject.org/files/ENCFF833FTF/@@download/ENCFF833FTF.bed.gz hg19 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF636DBM fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 1 ENCFF803PGO 4464399940 Michael Snyder, Stanford 07381f30febeb97ce1848901978a85ac https://www.encodeproject.org/files/ENCFF636DBM/@@download/ENCFF636DBM.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF812RLF fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 1 ENCFF599YET 3212323284 Michael Snyder, Stanford 4a28589057f528b262c9ec00f3af7453 https://www.encodeproject.org/files/ENCFF812RLF/@@download/ENCFF812RLF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF803PGO fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 2 ENCFF636DBM 5023430013 Michael Snyder, Stanford 371976c4e4d78f95214f537056c0eac4 https://www.encodeproject.org/files/ENCFF803PGO/@@download/ENCFF803PGO.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599YET fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 2 ENCFF812RLF 3587899556 Michael Snyder, Stanford 34be5a5579254114510e401f602efe30 https://www.encodeproject.org/files/ENCFF599YET/@@download/ENCFF599YET.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF162ZVX bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF807MUK, ENCFF812RLF 5601027470 ENCODE Processing Pipeline 50b2e9719bdcb05b914b0f28f938ee13 https://www.encodeproject.org/files/ENCFF162ZVX/@@download/ENCFF162ZVX.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF780VWO bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF807MUK, ENCFF812RLF 2290410797 ENCODE Processing Pipeline 6977d9734da67ecdad52ddb133dccb5a https://www.encodeproject.org/files/ENCFF780VWO/@@download/ENCFF780VWO.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723OJK bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF803PGO, ENCFF807MUK 8886326052 ENCODE Processing Pipeline d69ce1466aa8c7b3483659da3a82e92b https://www.encodeproject.org/files/ENCFF723OJK/@@download/ENCFF723OJK.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF579YLW bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF803PGO, ENCFF807MUK 5148340015 ENCODE Processing Pipeline 4a885a41f1438019504d6c8444d1d962 https://www.encodeproject.org/files/ENCFF579YLW/@@download/ENCFF579YLW.bam hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF743PUC bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF643CGH, ENCFF812RLF 5597221131 ENCODE Processing Pipeline 7bb3b4399a84a4d52acf3829718e178b https://www.encodeproject.org/files/ENCFF743PUC/@@download/ENCFF743PUC.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF636WIZ bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF643CGH, ENCFF803PGO 8879085590 ENCODE Processing Pipeline cec05c9313540cb81b319ea44b10bb69 https://www.encodeproject.org/files/ENCFF636WIZ/@@download/ENCFF636WIZ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF081WNV bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF643CGH, ENCFF812RLF 2293903468 ENCODE Processing Pipeline e9ea0f6bad3bc8e7e248486a5bfdb3cd https://www.encodeproject.org/files/ENCFF081WNV/@@download/ENCFF081WNV.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF504YJU bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF643CGH, ENCFF803PGO 5185616138 ENCODE Processing Pipeline 9d272b76fc7aa4d5f4bd200c500eb61f https://www.encodeproject.org/files/ENCFF504YJU/@@download/ENCFF504YJU.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF304DYC bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1644312406 ENCODE Processing Pipeline 7b8683ab0774e94113a9769c8b0fb78f https://www.encodeproject.org/files/ENCFF304DYC/@@download/ENCFF304DYC.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF961ERY bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1950147714 ENCODE Processing Pipeline f484e635aec7f5df26fb02ca4eb20c9e https://www.encodeproject.org/files/ENCFF961ERY/@@download/ENCFF961ERY.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF863OML bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 919370841 ENCODE Processing Pipeline 130e8581db9e36bbc8191ab601f305b8 https://www.encodeproject.org/files/ENCFF863OML/@@download/ENCFF863OML.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF725JGL bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 978295363 ENCODE Processing Pipeline 2ac6fe771deb239b92068f6b42a7947a https://www.encodeproject.org/files/ENCFF725JGL/@@download/ENCFF725JGL.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF638TZI bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1920692914 ENCODE Processing Pipeline 27a24beb839be28003a9a9297805f141 https://www.encodeproject.org/files/ENCFF638TZI/@@download/ENCFF638TZI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF472KMT bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 2202117925 ENCODE Processing Pipeline 9d2380f0cbb3d52deed64c7817f20812 https://www.encodeproject.org/files/ENCFF472KMT/@@download/ENCFF472KMT.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF814UGN bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 6103014 ENCODE Processing Pipeline 4fca2e74f5f2b499a66b0f50def774fa https://www.encodeproject.org/files/ENCFF814UGN/@@download/ENCFF814UGN.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF295RVX bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 6805560 ENCODE Processing Pipeline 1f45954b30c3dcf38f854dabe916518a https://www.encodeproject.org/files/ENCFF295RVX/@@download/ENCFF295RVX.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF363JPA bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 7116428 ENCODE Processing Pipeline 47af6e22ae882a3847927510426a252c https://www.encodeproject.org/files/ENCFF363JPA/@@download/ENCFF363JPA.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF356GGL bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF295RVX 11339384 ENCODE Processing Pipeline c3f7d4421f38d41812331a3b15d85f20 https://www.encodeproject.org/files/ENCFF356GGL/@@download/ENCFF356GGL.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF005MNG bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF814UGN 11431196 ENCODE Processing Pipeline 6bbc4779f4b7c3bd8ed7c7ca085f32f4 https://www.encodeproject.org/files/ENCFF005MNG/@@download/ENCFF005MNG.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF658GXY bigBed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF409WNF 564900 ENCODE Processing Pipeline 7dcdd5e72f317892f3f3d4fa8ff411b7 https://www.encodeproject.org/files/ENCFF658GXY/@@download/ENCFF658GXY.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF409WNF bed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF295RVX, ENCFF363JPA, ENCFF419RSJ, ENCFF814UGN 257014 ENCODE Processing Pipeline f8b28e363f6c65fbafd75c66cd6dcbe2 https://www.encodeproject.org/files/ENCFF409WNF/@@download/ENCFF409WNF.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF210HTZ bed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF295RVX, ENCFF363JPA, ENCFF419RSJ, ENCFF814UGN 351015 ENCODE Processing Pipeline e968bffb94c4efde18b64576f2b94638 https://www.encodeproject.org/files/ENCFF210HTZ/@@download/ENCFF210HTZ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF040HBF bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF363JPA 11350583 ENCODE Processing Pipeline 9ef3ba76fa9ce7856d61ebc28183f308 https://www.encodeproject.org/files/ENCFF040HBF/@@download/ENCFF040HBF.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF199OKG bigBed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF210HTZ 688636 ENCODE Processing Pipeline beb3d9d8d27d9787524598086b91af68 https://www.encodeproject.org/files/ENCFF199OKG/@@download/ENCFF199OKG.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF870WRG bigBed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF127GYQ 690815 ENCODE Processing Pipeline c752b19b70590f8e9b8a941b26ffe41e https://www.encodeproject.org/files/ENCFF870WRG/@@download/ENCFF870WRG.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF635PUG bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 1919231652 ENCODE Processing Pipeline bab3035d46953bff8d3ce6c62c1e4ac2 https://www.encodeproject.org/files/ENCFF635PUG/@@download/ENCFF635PUG.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF618BFX bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 2183421587 ENCODE Processing Pipeline e7f75ca155ba2d138b45bf648f9410dc https://www.encodeproject.org/files/ENCFF618BFX/@@download/ENCFF618BFX.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF412PRK bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF147CFU 11382640 ENCODE Processing Pipeline e7dfe7f96f441d873b91d57b2fbdec61 https://www.encodeproject.org/files/ENCFF412PRK/@@download/ENCFF412PRK.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF988AHE bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 1754538655 ENCODE Processing Pipeline 4136e7242a0770d44d53a8629019725a https://www.encodeproject.org/files/ENCFF988AHE/@@download/ENCFF988AHE.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF966ALZ bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 1011842435 ENCODE Processing Pipeline f6a28a7ee78a219c3682c6fd7eafb922 https://www.encodeproject.org/files/ENCFF966ALZ/@@download/ENCFF966ALZ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF814HVN bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 2152358080 ENCODE Processing Pipeline c9f93f60d11cdd0dafd2da0408786005 https://www.encodeproject.org/files/ENCFF814HVN/@@download/ENCFF814HVN.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF329HGR bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 963554749 ENCODE Processing Pipeline ee3363216b99859d5b9c306eeae4d76b https://www.encodeproject.org/files/ENCFF329HGR/@@download/ENCFF329HGR.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF869LKG bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 6770534 ENCODE Processing Pipeline d2fee1cbbf013603b8adb506173ad86b https://www.encodeproject.org/files/ENCFF869LKG/@@download/ENCFF869LKG.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF147CFU bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 6073498 ENCODE Processing Pipeline f119ed6bcc4288b8a62e142d50dcf2cc https://www.encodeproject.org/files/ENCFF147CFU/@@download/ENCFF147CFU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF301WWU bed narrowPeak peaks and background as input for IDR ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 7098166 ENCODE Processing Pipeline c3c5a6441b6ee560e66da67fd6d5d61f https://www.encodeproject.org/files/ENCFF301WWU/@@download/ENCFF301WWU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF056WXO bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF869LKG 11313452 ENCODE Processing Pipeline 6842b52ffadcf71fd49b1869ee39a66a https://www.encodeproject.org/files/ENCFF056WXO/@@download/ENCFF056WXO.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF527UYY bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF301WWU 11332368 ENCODE Processing Pipeline 4a388d4996cf5301016f24d9aa405e8c https://www.encodeproject.org/files/ENCFF527UYY/@@download/ENCFF527UYY.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF049KAI bed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF147CFU, ENCFF301WWU, ENCFF869LKG 252186 ENCODE Processing Pipeline 9acddcebe216bfc7637f18a09c2f0c43 https://www.encodeproject.org/files/ENCFF049KAI/@@download/ENCFF049KAI.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF776TIB bigBed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF049KAI 439153 ENCODE Processing Pipeline c72355aea20065b3d6ae89e4b809fab2 https://www.encodeproject.org/files/ENCFF776TIB/@@download/ENCFF776TIB.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF127GYQ bed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF147CFU, ENCFF301WWU, ENCFF869LKG 340897 ENCODE Processing Pipeline 0ac1a8c909c53b83c0eab8dd64d2ff69 https://www.encodeproject.org/files/ENCFF127GYQ/@@download/ENCFF127GYQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000WCV bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WDK 426143509 Michael Snyder, Stanford bd09ca37c64a1e02cfe79a5b014826c6 https://www.encodeproject.org/files/ENCFF000WCV/@@download/ENCFF000WCV.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WCW bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WDO 519972562 Michael Snyder, Stanford 6f8fe96f6ba0995798a501d3d188f6a8 https://www.encodeproject.org/files/ENCFF000WCW/@@download/ENCFF000WCW.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WCX bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFF 1175113 Michael Snyder, Stanford a44bcaa7aa081c94253dcda89d59e3e0 https://www.encodeproject.org/files/ENCFF000WCX/@@download/ENCFF000WCX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000WCY bigWig signal ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 340899373 Michael Snyder, Stanford 317f8eeaff1419b4e70f708006c403ba https://www.encodeproject.org/files/ENCFF000WCY/@@download/ENCFF000WCY.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000WDK fastq reads ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 748899536 Michael Snyder, Stanford c15b269be02edcb93da9d703b82c35df https://www.encodeproject.org/files/ENCFF000WDK/@@download/ENCFF000WDK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF000WDO fastq reads ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1195358230 Michael Snyder, Stanford 747d7afe5d6d716065f3da39534aefea https://www.encodeproject.org/files/ENCFF000WDO/@@download/ENCFF000WDO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF001VFF bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 481613 Michael Snyder, Stanford 41f93eac498901e34d87ebab312e425f https://www.encodeproject.org/files/ENCFF001VFF/@@download/ENCFF001VFF.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CPL bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 115381 ENCODE Consortium Analysis Working Group c30bfb05229daf605c7b5ef231d2f54c https://www.encodeproject.org/files/ENCFF002CPL/@@download/ENCFF002CPL.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF204MKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPL 347499 ENCODE Consortium c7aec6899888e33a5c70add82305034e https://www.encodeproject.org/files/ENCFF204MKZ/@@download/ENCFF204MKZ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF150IXN bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF643CGH 843273659 ENCODE Processing Pipeline ecada0b133f56524c835e9c35922d4b0 https://www.encodeproject.org/files/ENCFF150IXN/@@download/ENCFF150IXN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF887QJG bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF643CGH 1304182340 ENCODE Processing Pipeline 3ebe7916ce55d244af1581b9aea6240e https://www.encodeproject.org/files/ENCFF887QJG/@@download/ENCFF887QJG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF086GHN bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF643CGH 531788765 ENCODE Processing Pipeline 75fa17806be3923ee37f30f39270160a https://www.encodeproject.org/files/ENCFF086GHN/@@download/ENCFF086GHN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF707BSC bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF643CGH 781338093 ENCODE Processing Pipeline 18d0bfa6f2e687db3c001d2e78bd359b https://www.encodeproject.org/files/ENCFF707BSC/@@download/ENCFF707BSC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF748LVZ bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF807MUK 840009119 ENCODE Processing Pipeline 1ac5a6611afd308ed72068f24fab8768 https://www.encodeproject.org/files/ENCFF748LVZ/@@download/ENCFF748LVZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF834ABA bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF807MUK 1297896467 ENCODE Processing Pipeline 15c1998a7c4a13e81aa1959842bd0dd6 https://www.encodeproject.org/files/ENCFF834ABA/@@download/ENCFF834ABA.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF958IJR bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF807MUK 531677090 ENCODE Processing Pipeline 88602e4f44942dde62833d8b9ba7ff3b https://www.encodeproject.org/files/ENCFF958IJR/@@download/ENCFF958IJR.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF276QQY bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF807MUK 780697287 ENCODE Processing Pipeline b3333e6ac44a35c0601c1219383eecf1 https://www.encodeproject.org/files/ENCFF276QQY/@@download/ENCFF276QQY.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF868UJU bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 3887829 ENCODE Processing Pipeline 17baab5ed4f7c773f191519d3e6f609b https://www.encodeproject.org/files/ENCFF868UJU/@@download/ENCFF868UJU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF381NIE bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 4526368 ENCODE Processing Pipeline 711a80b078195952004d7ab68689723b https://www.encodeproject.org/files/ENCFF381NIE/@@download/ENCFF381NIE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF968KDX bed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF381NIE, ENCFF628ZZL, ENCFF868UJU 87660 ENCODE Processing Pipeline af9058a336a5f3bf39b5a34f6b37af34 https://www.encodeproject.org/files/ENCFF968KDX/@@download/ENCFF968KDX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF402FYF bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF381NIE, ENCFF628ZZL, ENCFF868UJU 110449 ENCODE Processing Pipeline 811017cf274710fe6aaf8c06d8649580 https://www.encodeproject.org/files/ENCFF402FYF/@@download/ENCFF402FYF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF248MIM bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF868UJU 9697080 ENCODE Processing Pipeline f5c742e3941593c3e8e814876ecc499e https://www.encodeproject.org/files/ENCFF248MIM/@@download/ENCFF248MIM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF338BHH bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 75386986 ENCODE Processing Pipeline 64d6c13d0743cb9030865e4ce3aa2902 https://www.encodeproject.org/files/ENCFF338BHH/@@download/ENCFF338BHH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF201VIH bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 169112218 ENCODE Processing Pipeline 61e5af75cbe590e79a34d41670b19129 https://www.encodeproject.org/files/ENCFF201VIH/@@download/ENCFF201VIH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF130WGW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF968KDX 191794 ENCODE Processing Pipeline cc456d36fde2088143757e7252c217a8 https://www.encodeproject.org/files/ENCFF130WGW/@@download/ENCFF130WGW.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF972UXB bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 492707781 ENCODE Processing Pipeline 5dab049b8f3a7a3bdc1f30381424e3eb https://www.encodeproject.org/files/ENCFF972UXB/@@download/ENCFF972UXB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF998KFO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF402FYF 267647 ENCODE Processing Pipeline 3377403d3f02c618c86c54a82b2d9478 https://www.encodeproject.org/files/ENCFF998KFO/@@download/ENCFF998KFO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF832YAG bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 176997758 ENCODE Processing Pipeline 75075b34ec00dd3cf51ec40e2be08b4a https://www.encodeproject.org/files/ENCFF832YAG/@@download/ENCFF832YAG.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF240PQR bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 301446391 ENCODE Processing Pipeline 960abd21b88b750e889884a69dbb9ad1 https://www.encodeproject.org/files/ENCFF240PQR/@@download/ENCFF240PQR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF851FHJ bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF628ZZL 10007095 ENCODE Processing Pipeline 4686e2a79fd6011ca0dccebd76e25f44 https://www.encodeproject.org/files/ENCFF851FHJ/@@download/ENCFF851FHJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF456LZL bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF381NIE 10951592 ENCODE Processing Pipeline 8bafaf1a6cf6c02e8f563d80c53b33a8 https://www.encodeproject.org/files/ENCFF456LZL/@@download/ENCFF456LZL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF354KLG bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 208608246 ENCODE Processing Pipeline 9e985c3d5cdabff86c8d43204937dcf1 https://www.encodeproject.org/files/ENCFF354KLG/@@download/ENCFF354KLG.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF628ZZL bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 3842869 ENCODE Processing Pipeline 3de0644af2684ccabf3006cced7086dd https://www.encodeproject.org/files/ENCFF628ZZL/@@download/ENCFF628ZZL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF263WFS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 75473365 ENCODE Processing Pipeline 6c39abad9d00157479f800da262d5326 https://www.encodeproject.org/files/ENCFF263WFS/@@download/ENCFF263WFS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF015ASS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 169156719 ENCODE Processing Pipeline 647b3ae7cd57bb8fd6dafcaa4a8f75d1 https://www.encodeproject.org/files/ENCFF015ASS/@@download/ENCFF015ASS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF381YNV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465IMC 192627 ENCODE Processing Pipeline b9786a9cbc67256d3061a7c1e78326fe https://www.encodeproject.org/files/ENCFF381YNV/@@download/ENCFF381YNV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF540XYR bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF327IRT 9691150 ENCODE Processing Pipeline 4cdbd4362c1724d9996dc34089ce49f3 https://www.encodeproject.org/files/ENCFF540XYR/@@download/ENCFF540XYR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF678LHU bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 208766661 ENCODE Processing Pipeline 2db9e7e2c594a2312dac1102e3f76e17 https://www.encodeproject.org/files/ENCFF678LHU/@@download/ENCFF678LHU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF002KFE bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF645NWZ 10004517 ENCODE Processing Pipeline a6afbc2628f303f67bd60f4882a3d92a https://www.encodeproject.org/files/ENCFF002KFE/@@download/ENCFF002KFE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF645NWZ bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 3844324 ENCODE Processing Pipeline b4789c7655cc464eb3b23a3bc194d7b6 https://www.encodeproject.org/files/ENCFF645NWZ/@@download/ENCFF645NWZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF465IMC bed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA, ENCFF327IRT, ENCFF419RSJ, ENCFF645NWZ 88183 ENCODE Processing Pipeline e7187e3af6ff32a07295275a28ad30ad https://www.encodeproject.org/files/ENCFF465IMC/@@download/ENCFF465IMC.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF259LNG bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA, ENCFF327IRT, ENCFF419RSJ, ENCFF645NWZ 115412 ENCODE Processing Pipeline 65d56d051c1b7ba9e9fa799a84f2de86 https://www.encodeproject.org/files/ENCFF259LNG/@@download/ENCFF259LNG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF558HBS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 177040100 ENCODE Processing Pipeline ba58c9e8cdad15d22f78dd6a1f7f3e43 https://www.encodeproject.org/files/ENCFF558HBS/@@download/ENCFF558HBS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF314IEF bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 299712059 ENCODE Processing Pipeline 32efd5a29914be9f0fe97a872443d35c https://www.encodeproject.org/files/ENCFF314IEF/@@download/ENCFF314IEF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF300YPA bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 493571352 ENCODE Processing Pipeline 9751a4fd7c4ca7e3d5dab390c6a38f58 https://www.encodeproject.org/files/ENCFF300YPA/@@download/ENCFF300YPA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF327IRT bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 3885869 ENCODE Processing Pipeline 277f7af8631e7e9ede1e404280a5b04c https://www.encodeproject.org/files/ENCFF327IRT/@@download/ENCFF327IRT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF016AAA bed narrowPeak peaks and background as input for IDR ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 4525846 ENCODE Processing Pipeline 3c3efc21d1ec5362698092e849a9ea21 https://www.encodeproject.org/files/ENCFF016AAA/@@download/ENCFF016AAA.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF825PWT bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA 10951612 ENCODE Processing Pipeline 2e11c4e0aca2fba3466684e2752fdfc3 https://www.encodeproject.org/files/ENCFF825PWT/@@download/ENCFF825PWT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF375WCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259LNG 274459 ENCODE Processing Pipeline 3c1d6562e9fdd1673647842c2d876c14 https://www.encodeproject.org/files/ENCFF375WCQ/@@download/ENCFF375WCQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF016LTD fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF517FFT 3364182196 Michael Snyder, Stanford d4470fe9670066f18625d9acbdbee48f https://www.encodeproject.org/files/ENCFF016LTD/@@download/ENCFF016LTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF517FFT fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF016LTD 3311966435 Michael Snyder, Stanford 6f86c6d88d8940699029433534d724ab https://www.encodeproject.org/files/ENCFF517FFT/@@download/ENCFF517FFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF303DWC bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF807MUK 6741865984 ENCODE Processing Pipeline 7362526d2f6b45820b8c6f5916e0d4aa https://www.encodeproject.org/files/ENCFF303DWC/@@download/ENCFF303DWC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF146EZL bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF807MUK 5254021264 ENCODE Processing Pipeline 7352af532b9174262bc87b357ceef087 https://www.encodeproject.org/files/ENCFF146EZL/@@download/ENCFF146EZL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF727OFM bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF643CGH 6749753298 ENCODE Processing Pipeline cfb104d868b20cadea53450da321af1b https://www.encodeproject.org/files/ENCFF727OFM/@@download/ENCFF727OFM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF403QBQ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF643CGH 5264434471 ENCODE Processing Pipeline 39977644b3ed494644dba98e48c97324 https://www.encodeproject.org/files/ENCFF403QBQ/@@download/ENCFF403QBQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF305EOQ bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 1287898689 ENCODE Processing Pipeline 43d8bd27b880e38247f1df3844701c98 https://www.encodeproject.org/files/ENCFF305EOQ/@@download/ENCFF305EOQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF296OUC bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 1213737273 ENCODE Processing Pipeline 65f401a45b5a8706f065df649bf258af https://www.encodeproject.org/files/ENCFF296OUC/@@download/ENCFF296OUC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF416NVB bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 6177683 ENCODE Processing Pipeline 2d63344a9a995b694219b116bf152067 https://www.encodeproject.org/files/ENCFF416NVB/@@download/ENCFF416NVB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF253MGX bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF416NVB 11310683 ENCODE Processing Pipeline 4f8dcd15020042f4fa4c0613f61ce6d2 https://www.encodeproject.org/files/ENCFF253MGX/@@download/ENCFF253MGX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF561NID fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 1 101 paired-ended 1 ENCFF222LNP 3264906697 Michael Snyder, Stanford 32f20afdd891fbd5a6dd988519319686 https://www.encodeproject.org/files/ENCFF561NID/@@download/ENCFF561NID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF222LNP fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 1 101 paired-ended 2 ENCFF561NID 3274351538 Michael Snyder, Stanford ec1e65e8d92e85c0af49852a50cd2dbe https://www.encodeproject.org/files/ENCFF222LNP/@@download/ENCFF222LNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF547OWH bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF807MUK 6342856991 ENCODE Processing Pipeline 584f03637fcf57ec592d9efaf6d3dfd1 https://www.encodeproject.org/files/ENCFF547OWH/@@download/ENCFF547OWH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF823JVZ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF807MUK 5410949542 ENCODE Processing Pipeline a9201c29bf684387ae8ad6e261528983 https://www.encodeproject.org/files/ENCFF823JVZ/@@download/ENCFF823JVZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF307KLQ bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF643CGH 6349594826 ENCODE Processing Pipeline 3d4cf1b428abc6a96eab52d6e5b6a837 https://www.encodeproject.org/files/ENCFF307KLQ/@@download/ENCFF307KLQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF759BKF bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF643CGH 5418413196 ENCODE Processing Pipeline c207a77e45443349109eec9933dfd0d7 https://www.encodeproject.org/files/ENCFF759BKF/@@download/ENCFF759BKF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF419CYW bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 982238376 ENCODE Processing Pipeline 6d47ffd4cd5b6c812d027d308e879996 https://www.encodeproject.org/files/ENCFF419CYW/@@download/ENCFF419CYW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF996FFB bigBed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF843GOD 168847 ENCODE Processing Pipeline f48834dd522b8b54c42d6ba1b51c9a00 https://www.encodeproject.org/files/ENCFF996FFB/@@download/ENCFF996FFB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF010MQT bigBed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF475DID 359591 ENCODE Processing Pipeline df3e6e47ab7df1af032b574915f54e9b https://www.encodeproject.org/files/ENCFF010MQT/@@download/ENCFF010MQT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF716ASB bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 2070462289 ENCODE Processing Pipeline eab20b64150c7b264492a6985f43efb1 https://www.encodeproject.org/files/ENCFF716ASB/@@download/ENCFF716ASB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF475DID bed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF106TJI, ENCFF416NVB, ENCFF419RSJ, ENCFF644APU 174652 ENCODE Processing Pipeline 95ab4460e261576f419f41ea108fb66c https://www.encodeproject.org/files/ENCFF475DID/@@download/ENCFF475DID.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF843GOD bed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF106TJI, ENCFF416NVB, ENCFF419RSJ, ENCFF644APU 69285 ENCODE Processing Pipeline 20a479f2015d50c44ae37697bcc6a54e https://www.encodeproject.org/files/ENCFF843GOD/@@download/ENCFF843GOD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF947NIE bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 1844821405 ENCODE Processing Pipeline 171c07baecf4883a4366885301a47006 https://www.encodeproject.org/files/ENCFF947NIE/@@download/ENCFF947NIE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF644APU bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 7166735 ENCODE Processing Pipeline 884ae742bcc1517395fdb901a704f5c8 https://www.encodeproject.org/files/ENCFF644APU/@@download/ENCFF644APU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF435MMO bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF106TJI 13382070 ENCODE Processing Pipeline 111baac998fbcbc9ee247f071ae561df https://www.encodeproject.org/files/ENCFF435MMO/@@download/ENCFF435MMO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF547TZX bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 1286209839 ENCODE Processing Pipeline e71b3011b51326eb9afde4580c8ef265 https://www.encodeproject.org/files/ENCFF547TZX/@@download/ENCFF547TZX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF434YEG bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 2274989938 ENCODE Processing Pipeline 96d2a820a5d450b82450db26b1b1f19f https://www.encodeproject.org/files/ENCFF434YEG/@@download/ENCFF434YEG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF106TJI bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 6487229 ENCODE Processing Pipeline da57736354c52fe74c2da8a8dce5e4fa https://www.encodeproject.org/files/ENCFF106TJI/@@download/ENCFF106TJI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF631XNO bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF644APU 13358224 ENCODE Processing Pipeline fdcb092996fba19164a1e9ae3995a2d1 https://www.encodeproject.org/files/ENCFF631XNO/@@download/ENCFF631XNO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF480CCO bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 6211209 ENCODE Processing Pipeline d621c8803b3601df8479e24f0a4b7c6b https://www.encodeproject.org/files/ENCFF480CCO/@@download/ENCFF480CCO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF793MJC bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 1336366000 ENCODE Processing Pipeline 58085950731d770d9474c52dd7659481 https://www.encodeproject.org/files/ENCFF793MJC/@@download/ENCFF793MJC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF131RRA bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 1251916365 ENCODE Processing Pipeline b63c61a911296b75dab5040145786c0f https://www.encodeproject.org/files/ENCFF131RRA/@@download/ENCFF131RRA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF812WGU bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 1196090193 ENCODE Processing Pipeline f66b4bfc878a0405b00fd4a7a674c865 https://www.encodeproject.org/files/ENCFF812WGU/@@download/ENCFF812WGU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF996DZN bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 2323495484 ENCODE Processing Pipeline e0c78d2a9906af8afcec0f020b9ea104 https://www.encodeproject.org/files/ENCFF996DZN/@@download/ENCFF996DZN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF038RJE bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 6497442 ENCODE Processing Pipeline 68c153d139ffdab16fcf80ba175f90ba https://www.encodeproject.org/files/ENCFF038RJE/@@download/ENCFF038RJE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF446HSS bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF480CCO 11282220 ENCODE Processing Pipeline 28a4d7114cab2785401def6cd416544d https://www.encodeproject.org/files/ENCFF446HSS/@@download/ENCFF446HSS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF887XGV bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 1040017887 ENCODE Processing Pipeline a320784774f71da76e5d0ce88d95742f https://www.encodeproject.org/files/ENCFF887XGV/@@download/ENCFF887XGV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF006TOI bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF833YUF 13332983 ENCODE Processing Pipeline 0e5f75f38dcf62bc1dfcc355a9e95060 https://www.encodeproject.org/files/ENCFF006TOI/@@download/ENCFF006TOI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF431XRU bed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF001TDO, ENCFF038RJE, ENCFF480CCO, ENCFF833YUF 68420 ENCODE Processing Pipeline 46d09e5b04470b26a35ffe2252a74352 https://www.encodeproject.org/files/ENCFF431XRU/@@download/ENCFF431XRU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF589LEH bigBed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF431XRU 166607 ENCODE Processing Pipeline 6bb60dcc82e359e9a48469a00ebb4aeb https://www.encodeproject.org/files/ENCFF589LEH/@@download/ENCFF589LEH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF833YUF bed narrowPeak peaks and background as input for IDR ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 7166150 ENCODE Processing Pipeline 5bcbd2d631fd49f28071e1dad6d916de https://www.encodeproject.org/files/ENCFF833YUF/@@download/ENCFF833YUF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF403LNM bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF038RJE 13376732 ENCODE Processing Pipeline 49865cd520729ce90c70576c8495c1de https://www.encodeproject.org/files/ENCFF403LNM/@@download/ENCFF403LNM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF539CKD bed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF001TDO, ENCFF038RJE, ENCFF480CCO, ENCFF833YUF 175352 ENCODE Processing Pipeline 7d363f200e0f6652249cddc58feb5f2d https://www.encodeproject.org/files/ENCFF539CKD/@@download/ENCFF539CKD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF197OXB bigBed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF539CKD 360195 ENCODE Processing Pipeline 4b993913b9ad94527c3bf98247169294 https://www.encodeproject.org/files/ENCFF197OXB/@@download/ENCFF197OXB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF276DXN fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF659XQW 2602768069 Michael Snyder, Stanford 36791fc7711e9a0374f489503ee9a5fe https://www.encodeproject.org/files/ENCFF276DXN/@@download/ENCFF276DXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF060AFD fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF099MWU 2124592226 Michael Snyder, Stanford dbe86124a9af4e33860c7df49fdb28f4 https://www.encodeproject.org/files/ENCFF060AFD/@@download/ENCFF060AFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF099MWU fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF060AFD 2153666542 Michael Snyder, Stanford 893e9df649030a2109a406ce9a3e546d https://www.encodeproject.org/files/ENCFF099MWU/@@download/ENCFF099MWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF659XQW fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF276DXN 2566307516 Michael Snyder, Stanford 87925945ac463479d167a1d0891c475b https://www.encodeproject.org/files/ENCFF659XQW/@@download/ENCFF659XQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF445ZWE bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF807MUK 4681623284 ENCODE Processing Pipeline 5efe792819dd13727a53ae4a2342f569 https://www.encodeproject.org/files/ENCFF445ZWE/@@download/ENCFF445ZWE.bam hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF204LRJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF807MUK 3635858853 ENCODE Processing Pipeline cb6e06a4ebc4439e9862a9ce8bcb1996 https://www.encodeproject.org/files/ENCFF204LRJ/@@download/ENCFF204LRJ.bam hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF361MVV bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF643CGH 3642777401 ENCODE Processing Pipeline 6091ef40b68d6eb4b7082acd2f436caf https://www.encodeproject.org/files/ENCFF361MVV/@@download/ENCFF361MVV.bam GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF440WOD bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF643CGH 4687304321 ENCODE Processing Pipeline 23448b6b486b1aecc90b7ac38190ad53 https://www.encodeproject.org/files/ENCFF440WOD/@@download/ENCFF440WOD.bam GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF575SRZ bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF659XQW, ENCFF807MUK 5562511245 ENCODE Processing Pipeline 3d787bdfd20b558211db76e901500bb8 https://www.encodeproject.org/files/ENCFF575SRZ/@@download/ENCFF575SRZ.bam hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF758USJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF659XQW, ENCFF807MUK 4438992666 ENCODE Processing Pipeline 28418194534cc920e241c9c779f876fa https://www.encodeproject.org/files/ENCFF758USJ/@@download/ENCFF758USJ.bam hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF552FJH bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF643CGH, ENCFF659XQW 5566889946 ENCODE Processing Pipeline fc13c2ebc524da546be540842f6c6350 https://www.encodeproject.org/files/ENCFF552FJH/@@download/ENCFF552FJH.bam GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF089SHL bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF643CGH, ENCFF659XQW 4445494153 ENCODE Processing Pipeline 8cbe4382d97774f7f7563732e729096f https://www.encodeproject.org/files/ENCFF089SHL/@@download/ENCFF089SHL.bam GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF549HXP bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 1104533021 ENCODE Processing Pipeline c0eda11aa8bdc61a4a90d4ed81bab479 https://www.encodeproject.org/files/ENCFF549HXP/@@download/ENCFF549HXP.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF561BWI bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 5872338 ENCODE Processing Pipeline 6eb922549cac8e5fd92f8691463dba3f https://www.encodeproject.org/files/ENCFF561BWI/@@download/ENCFF561BWI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF987PGY bed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK, ENCFF419RSJ, ENCFF561BWI, ENCFF829UQN 222127 ENCODE Processing Pipeline e281491560958b7e181c0b521a310f5e https://www.encodeproject.org/files/ENCFF987PGY/@@download/ENCFF987PGY.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF837UBW bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 1805690528 ENCODE Processing Pipeline 1f629fb31f312e712bb34a08f88102bc https://www.encodeproject.org/files/ENCFF837UBW/@@download/ENCFF837UBW.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF848LJL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 2079194712 ENCODE Processing Pipeline 45c78641c1ea085a4d0e0b5b4d114ce2 https://www.encodeproject.org/files/ENCFF848LJL/@@download/ENCFF848LJL.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF004ACP bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 990401080 ENCODE Processing Pipeline 812935662cce667eb4de89e122174de6 https://www.encodeproject.org/files/ENCFF004ACP/@@download/ENCFF004ACP.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF195WFT bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 1058256353 ENCODE Processing Pipeline 5878bb702a5fc92472c1409777d0e409 https://www.encodeproject.org/files/ENCFF195WFT/@@download/ENCFF195WFT.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF381QTG bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF561BWI 11337287 ENCODE Processing Pipeline 7c604d3c78341841a31dda4d854aedfc https://www.encodeproject.org/files/ENCFF381QTG/@@download/ENCFF381QTG.bigBed GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF963ZTP bigBed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF987PGY 495341 ENCODE Processing Pipeline f181f8fbce4f5e445d88ff4286a3e801 https://www.encodeproject.org/files/ENCFF963ZTP/@@download/ENCFF963ZTP.bigBed GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF691UIA bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF829UQN 13389756 ENCODE Processing Pipeline 717a2ff0e61cc131b399a55b45c6b766 https://www.encodeproject.org/files/ENCFF691UIA/@@download/ENCFF691UIA.bigBed GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF046AYP bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK 13320267 ENCODE Processing Pipeline ee2b3f8e05d0d3ac755e25fd95f6c766 https://www.encodeproject.org/files/ENCFF046AYP/@@download/ENCFF046AYP.bigBed GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF427XBU bed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK, ENCFF419RSJ, ENCFF561BWI, ENCFF829UQN 135590 ENCODE Processing Pipeline 737ac08fa75130e857793e32f6831a74 https://www.encodeproject.org/files/ENCFF427XBU/@@download/ENCFF427XBU.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF366HBX bigBed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF427XBU 343904 ENCODE Processing Pipeline 206c6a585bd2a795c2fb47ab4d2aa8de https://www.encodeproject.org/files/ENCFF366HBX/@@download/ENCFF366HBX.bigBed GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF669LLL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 1112358459 ENCODE Processing Pipeline 7d76d99898cc0508faff879766857246 https://www.encodeproject.org/files/ENCFF669LLL/@@download/ENCFF669LLL.bigWig GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF829UQN bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 6472203 ENCODE Processing Pipeline 383113a9a32e2d233176b9cc7fa52093 https://www.encodeproject.org/files/ENCFF829UQN/@@download/ENCFF829UQN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF382WPK bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 7134716 ENCODE Processing Pipeline 2a1de286f280907264e4ef15ca6ee196 https://www.encodeproject.org/files/ENCFF382WPK/@@download/ENCFF382WPK.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF755SWK bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 972787040 ENCODE Processing Pipeline 7bf7cbfa8c6f2aa6ff03fea015229717 https://www.encodeproject.org/files/ENCFF755SWK/@@download/ENCFF755SWK.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF458EXI bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 1866566430 ENCODE Processing Pipeline 3596d7f2a667054d152f588e0fa0e56b https://www.encodeproject.org/files/ENCFF458EXI/@@download/ENCFF458EXI.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF801AFD bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF057LDF 13296810 ENCODE Processing Pipeline f9305349d5f0a0d8c9813b8e2690325a https://www.encodeproject.org/files/ENCFF801AFD/@@download/ENCFF801AFD.bigBed hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF082DHF bed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF057LDF, ENCFF562WIC, ENCFF916SIZ 131178 ENCODE Processing Pipeline de353e6e315617759d3377c57217670d https://www.encodeproject.org/files/ENCFF082DHF/@@download/ENCFF082DHF.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF632MBO bed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF057LDF, ENCFF562WIC, ENCFF916SIZ 208040 ENCODE Processing Pipeline 77c0993b8896711fa45c03a67e592c7b https://www.encodeproject.org/files/ENCFF632MBO/@@download/ENCFF632MBO.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF562WIC bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 6487120 ENCODE Processing Pipeline 8dbfd846077b291aad653f4a95112cea https://www.encodeproject.org/files/ENCFF562WIC/@@download/ENCFF562WIC.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF968QNK bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF916SIZ 11322378 ENCODE Processing Pipeline f864ed17d68c2a6c7648795f59908bd9 https://www.encodeproject.org/files/ENCFF968QNK/@@download/ENCFF968QNK.bigBed hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF238YRN bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 1133820753 ENCODE Processing Pipeline 0c5f35f36db13dbdbf4989bcff4510ba https://www.encodeproject.org/files/ENCFF238YRN/@@download/ENCFF238YRN.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF202VQL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 2082790897 ENCODE Processing Pipeline 3eef81456cf0a1f58b5d034d4f4eb87e https://www.encodeproject.org/files/ENCFF202VQL/@@download/ENCFF202VQL.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF671VEC bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 1064925402 ENCODE Processing Pipeline 47d47f52ef37681a9cb6c8fc18f15ba1 https://www.encodeproject.org/files/ENCFF671VEC/@@download/ENCFF671VEC.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF644PRE bigBed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF082DHF 338880 ENCODE Processing Pipeline e47654f97eb26f13ba6d36707d04b654 https://www.encodeproject.org/files/ENCFF644PRE/@@download/ENCFF644PRE.bigBed hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF410WHB bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 977387517 ENCODE Processing Pipeline 82cf2436596760ced7874f3158267393 https://www.encodeproject.org/files/ENCFF410WHB/@@download/ENCFF410WHB.bigWig hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF916SIZ bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 5872937 ENCODE Processing Pipeline 014543a6096a1419451ccae73d845cfd https://www.encodeproject.org/files/ENCFF916SIZ/@@download/ENCFF916SIZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF057LDF bed narrowPeak peaks and background as input for IDR ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 7119300 ENCODE Processing Pipeline 656c8a57825846b0fdce3cd4c9493088 https://www.encodeproject.org/files/ENCFF057LDF/@@download/ENCFF057LDF.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF555PJG bigBed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF632MBO 477308 ENCODE Processing Pipeline 8a622c3f9fe44de7ce19e091ddf4293c https://www.encodeproject.org/files/ENCFF555PJG/@@download/ENCFF555PJG.bigBed hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF301VAM bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF562WIC 13390861 ENCODE Processing Pipeline 83ec0359111edbba4a319e538798a477 https://www.encodeproject.org/files/ENCFF301VAM/@@download/ENCFF301VAM.bigBed hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF000NYZ bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZO 1665053881 Richard Myers, HAIB 7aeca89582e6782a0d92691fceae94f6 https://www.encodeproject.org/files/ENCFF000NYZ/@@download/ENCFF000NYZ.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NZB bigBed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXY 1503585 Richard Myers, HAIB 0d6c669bf4fabb8ed820841ddd191264 https://www.encodeproject.org/files/ENCFF000NZB/@@download/ENCFF000NZB.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NZC bigBed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXZ 712919 Richard Myers, HAIB 5d8b51a86f298062ba1cba56737d2000 https://www.encodeproject.org/files/ENCFF000NZC/@@download/ENCFF000NZC.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NZD bigWig raw signal ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 63856218 Richard Myers, HAIB 3a680b02003d205f9c535b67b4a808cd https://www.encodeproject.org/files/ENCFF000NZD/@@download/ENCFF000NZD.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000NZE bigWig raw signal ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 17961651 Richard Myers, HAIB e7aa660d78ead6d251f6608c3fbd9d7e https://www.encodeproject.org/files/ENCFF000NZE/@@download/ENCFF000NZE.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000NZF bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZQ 673582149 Richard Myers, HAIB e2ef2288343a6c53b9a038a9d0dc92d8 https://www.encodeproject.org/files/ENCFF000NZF/@@download/ENCFF000NZF.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NZO fastq reads ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 732344143 Richard Myers, HAIB 07f90a31b8103bbdbc9ca742bde1990c https://www.encodeproject.org/files/ENCFF000NZO/@@download/ENCFF000NZO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NZQ fastq reads ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1349640631 Richard Myers, HAIB 3531a727a2f8da3414267a10652034be https://www.encodeproject.org/files/ENCFF000NZQ/@@download/ENCFF000NZQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TXY bed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 827444 Richard Myers, HAIB fb1b898c5a765ee3ff980f7fbca7b1c6 https://www.encodeproject.org/files/ENCFF001TXY/@@download/ENCFF001TXY.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TXZ bed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 445543 Richard Myers, HAIB 9ec3819efc30c9208a512b642c86a69d https://www.encodeproject.org/files/ENCFF001TXZ/@@download/ENCFF001TXZ.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CHJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 489675 ENCODE Consortium Analysis Working Group 92fda2a5af18eacb65aacdddbd0021ed https://www.encodeproject.org/files/ENCFF002CHJ/@@download/ENCFF002CHJ.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF627XPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHJ 1073668 ENCODE Consortium 14c314ca61d327251a3f9099fd558f72 https://www.encodeproject.org/files/ENCFF627XPJ/@@download/ENCFF627XPJ.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF052ZVD bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF643CGH 953697596 ENCODE Processing Pipeline f66725278ee7c33eedf7ccec76053907 https://www.encodeproject.org/files/ENCFF052ZVD/@@download/ENCFF052ZVD.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF018FQW bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF643CGH 535815250 ENCODE Processing Pipeline d5d62a4389314d1d84256f89d76bf4b2 https://www.encodeproject.org/files/ENCFF018FQW/@@download/ENCFF018FQW.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF491WYR bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF643CGH 1446250586 ENCODE Processing Pipeline a4b1861d0092e03e39b81cc2f427f341 https://www.encodeproject.org/files/ENCFF491WYR/@@download/ENCFF491WYR.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF275TPO bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF643CGH 511252471 ENCODE Processing Pipeline 91e886048b87d2550a9b0411e59da14f https://www.encodeproject.org/files/ENCFF275TPO/@@download/ENCFF275TPO.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF917NZU bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF807MUK 535314901 ENCODE Processing Pipeline 2b1b473378d01e79b18b4728235ab282 https://www.encodeproject.org/files/ENCFF917NZU/@@download/ENCFF917NZU.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF364VOW bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF807MUK 950934665 ENCODE Processing Pipeline ee7fb6ef3dda6a42bec1f2806c37689c https://www.encodeproject.org/files/ENCFF364VOW/@@download/ENCFF364VOW.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF958KJV bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF807MUK 1444697401 ENCODE Processing Pipeline 4d45cf243c3d722f7e2295e006525794 https://www.encodeproject.org/files/ENCFF958KJV/@@download/ENCFF958KJV.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF512AMK bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF807MUK 506623907 ENCODE Processing Pipeline 5cb23442e8156f5df610311a5bb9bfbb https://www.encodeproject.org/files/ENCFF512AMK/@@download/ENCFF512AMK.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF659YOA bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 484513590 ENCODE Processing Pipeline 1c159657bf0fcf808afdb5e655efa84a https://www.encodeproject.org/files/ENCFF659YOA/@@download/ENCFF659YOA.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF067IFI bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 510269386 ENCODE Processing Pipeline bd271db7daeb3fc2e8b5107bb0b3ef9e https://www.encodeproject.org/files/ENCFF067IFI/@@download/ENCFF067IFI.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF227DAH bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 596426247 ENCODE Processing Pipeline 4326a1c69d62c6b8f3ca39c3af6a24a1 https://www.encodeproject.org/files/ENCFF227DAH/@@download/ENCFF227DAH.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF964BYM bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 289165238 ENCODE Processing Pipeline 7d18b7761398ce7ff1c3b0ca7623112e https://www.encodeproject.org/files/ENCFF964BYM/@@download/ENCFF964BYM.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF628YUS bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 273897875 ENCODE Processing Pipeline 80ecb40e8461ecb6f3b61001b4586f61 https://www.encodeproject.org/files/ENCFF628YUS/@@download/ENCFF628YUS.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF702MTT bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 488617594 ENCODE Processing Pipeline 40bdafb0b464a531d618a57db3c39048 https://www.encodeproject.org/files/ENCFF702MTT/@@download/ENCFF702MTT.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF595ZLD bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 4710440 ENCODE Processing Pipeline 9b78dc4690e82bbbf1488a225ebac441 https://www.encodeproject.org/files/ENCFF595ZLD/@@download/ENCFF595ZLD.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF877BPJ bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 5407590 ENCODE Processing Pipeline 3783fdfde5af7fd39aba72c64f944dc9 https://www.encodeproject.org/files/ENCFF877BPJ/@@download/ENCFF877BPJ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF314GUU bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF595ZLD 10601343 ENCODE Processing Pipeline 14da83f21ff8af004f76c646c15038e0 https://www.encodeproject.org/files/ENCFF314GUU/@@download/ENCFF314GUU.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF518BTM bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 4537940 ENCODE Processing Pipeline 07e99b0bea72c11d5224fe4cfbd27e4b https://www.encodeproject.org/files/ENCFF518BTM/@@download/ENCFF518BTM.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF129XTQ bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF877BPJ 10998333 ENCODE Processing Pipeline 35f9ff1bb7dc4132d8a4fd8f7eb106c9 https://www.encodeproject.org/files/ENCFF129XTQ/@@download/ENCFF129XTQ.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF343DNF bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF518BTM 10289065 ENCODE Processing Pipeline dece2a71aba10b7cc507ab014b58eac6 https://www.encodeproject.org/files/ENCFF343DNF/@@download/ENCFF343DNF.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF952CNN bed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF518BTM, ENCFF595ZLD, ENCFF877BPJ 367015 ENCODE Processing Pipeline a493185738fd02f435be01ef5597b440 https://www.encodeproject.org/files/ENCFF952CNN/@@download/ENCFF952CNN.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF422ZQG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF952CNN 674339 ENCODE Processing Pipeline 66596b6c69de2bedd9cb46783147078a https://www.encodeproject.org/files/ENCFF422ZQG/@@download/ENCFF422ZQG.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF196JGP bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF518BTM, ENCFF595ZLD, ENCFF877BPJ 380037 ENCODE Processing Pipeline 208110c4fa01e0e67c5715c25d3145b4 https://www.encodeproject.org/files/ENCFF196JGP/@@download/ENCFF196JGP.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF847INA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196JGP 690810 ENCODE Processing Pipeline d7acc2495bc80ddfc21ec77ee50226bd https://www.encodeproject.org/files/ENCFF847INA/@@download/ENCFF847INA.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF558GNG bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 274599881 ENCODE Processing Pipeline bbdd79cb3692bb8c18ca47f7d1b89a23 https://www.encodeproject.org/files/ENCFF558GNG/@@download/ENCFF558GNG.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF469IOH bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 287421995 ENCODE Processing Pipeline d48dc86d7d972840d3595f724f263e74 https://www.encodeproject.org/files/ENCFF469IOH/@@download/ENCFF469IOH.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF449NQT bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 592187920 ENCODE Processing Pipeline cf0b6c5e41666ac0e6fc828116da71c1 https://www.encodeproject.org/files/ENCFF449NQT/@@download/ENCFF449NQT.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF997KZO bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 489451260 ENCODE Processing Pipeline 01912e8bfea1cd829a902db3f719a86f https://www.encodeproject.org/files/ENCFF997KZO/@@download/ENCFF997KZO.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF759XQV bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 690107279 ENCODE Processing Pipeline 0df820f4990956087e7654c137a434f7 https://www.encodeproject.org/files/ENCFF759XQV/@@download/ENCFF759XQV.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF525KHQ bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF565JQY 10336829 ENCODE Processing Pipeline b15ce1e89db613ae38d6628428c760fd https://www.encodeproject.org/files/ENCFF525KHQ/@@download/ENCFF525KHQ.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF252RWC bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 4449893 ENCODE Processing Pipeline e6409899363ddd545604df6c4df87440 https://www.encodeproject.org/files/ENCFF252RWC/@@download/ENCFF252RWC.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF470FRK bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF252RWC 10107060 ENCODE Processing Pipeline 9ec8d1e72abf26888660e414e1f7213d https://www.encodeproject.org/files/ENCFF470FRK/@@download/ENCFF470FRK.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF513RHP bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF915CCU 11015810 ENCODE Processing Pipeline 8697f8db8bd67c39faad6fb6e22acbef https://www.encodeproject.org/files/ENCFF513RHP/@@download/ENCFF513RHP.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF565JQY bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 4541244 ENCODE Processing Pipeline 2b0974ffd44803847aca1d83fa6607fd https://www.encodeproject.org/files/ENCFF565JQY/@@download/ENCFF565JQY.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF945PRR bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 476829490 ENCODE Processing Pipeline 31f4790ae46f7028c83a6f28d40d4b9d https://www.encodeproject.org/files/ENCFF945PRR/@@download/ENCFF945PRR.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF915CCU bed narrowPeak peaks and background as input for IDR ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 5419864 ENCODE Processing Pipeline 4023c62bd9c7d0edcea64e79fda56e7d https://www.encodeproject.org/files/ENCFF915CCU/@@download/ENCFF915CCU.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF226YNH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF969EMZ 671691 ENCODE Processing Pipeline 1e8438943b38588f0b73474edb1430c9 https://www.encodeproject.org/files/ENCFF226YNH/@@download/ENCFF226YNH.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF696YCM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339KUO 679410 ENCODE Processing Pipeline 02b6363b325a4c3a7ec8eef8c79d1c99 https://www.encodeproject.org/files/ENCFF696YCM/@@download/ENCFF696YCM.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF969EMZ bed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252RWC, ENCFF565JQY, ENCFF915CCU 365148 ENCODE Processing Pipeline 3d7ef811461c889b0ff18ad7fd6b62dc https://www.encodeproject.org/files/ENCFF969EMZ/@@download/ENCFF969EMZ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF339KUO bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252RWC, ENCFF565JQY, ENCFF915CCU 371645 ENCODE Processing Pipeline 6e212171131e6ee7f7d1bc41c78a0c29 https://www.encodeproject.org/files/ENCFF339KUO/@@download/ENCFF339KUO.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VYJ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 548813423 Michael Snyder, Stanford d40f850c2a4d12fe5381ab2c64278186 https://www.encodeproject.org/files/ENCFF000VYJ/@@download/ENCFF000VYJ.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VYK bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 568196210 Michael Snyder, Stanford f4662da80972dfc4d670ee33470c49e3 https://www.encodeproject.org/files/ENCFF000VYK/@@download/ENCFF000VYK.bam hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VYL bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEQ 2269487 Michael Snyder, Stanford 3e8ae973063d599ae13d2fc45437cc4b https://www.encodeproject.org/files/ENCFF000VYL/@@download/ENCFF000VYL.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VYM fastq reads ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1127928550 Michael Snyder, Stanford a86b8fb97032a9db2fa4940d81b2dc60 https://www.encodeproject.org/files/ENCFF000VYM/@@download/ENCFF000VYM.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VYO fastq reads ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1127357790 Michael Snyder, Stanford 80fa41a07af09297758649ccb40a2a04 https://www.encodeproject.org/files/ENCFF000VYO/@@download/ENCFF000VYO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF000VYQ bigWig signal ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 419482827 Michael Snyder, Stanford a87c68ea617e5ae4321992e36fe580d9 https://www.encodeproject.org/files/ENCFF000VYQ/@@download/ENCFF000VYQ.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VEQ bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 919322 Michael Snyder, Stanford ff0cca0c20dd2701091eac556a813af1 https://www.encodeproject.org/files/ENCFF001VEQ/@@download/ENCFF001VEQ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COX bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 487628 ENCODE Consortium Analysis Working Group 4fbb1074820a315f2c46941fd87d8591 https://www.encodeproject.org/files/ENCFF002COX/@@download/ENCFF002COX.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF346FHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COX 1157976 ENCODE Consortium e23d99b1c47a5dbba24ad748bfcadca6 https://www.encodeproject.org/files/ENCFF346FHC/@@download/ENCFF346FHC.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF387JUO bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF643CGH 1115869217 ENCODE Processing Pipeline def74a0fcbe3bbf9fa4fa0144dd5cf7c https://www.encodeproject.org/files/ENCFF387JUO/@@download/ENCFF387JUO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF122OAU bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF643CGH 1130378835 ENCODE Processing Pipeline 30ce71a3b9b7e7934ac857619f46f1a6 https://www.encodeproject.org/files/ENCFF122OAU/@@download/ENCFF122OAU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF406RXQ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF643CGH 695316999 ENCODE Processing Pipeline 54f9d433af352ddbb2cb1bcd0fc66cc5 https://www.encodeproject.org/files/ENCFF406RXQ/@@download/ENCFF406RXQ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF352KKZ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF643CGH 739841442 ENCODE Processing Pipeline 0bab0a41373568764e8c6c79874c0978 https://www.encodeproject.org/files/ENCFF352KKZ/@@download/ENCFF352KKZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF308ZET bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF807MUK 1111858793 ENCODE Processing Pipeline 98313e9bbcf1093f80b2560f6dbf1df8 https://www.encodeproject.org/files/ENCFF308ZET/@@download/ENCFF308ZET.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF962MLT bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF807MUK 1127096657 ENCODE Processing Pipeline 8cefbd4b663867693bf6720d7dcce1a5 https://www.encodeproject.org/files/ENCFF962MLT/@@download/ENCFF962MLT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF289UDS bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF807MUK 695105877 ENCODE Processing Pipeline a0378ebfb66c25e8325c1b296df35402 https://www.encodeproject.org/files/ENCFF289UDS/@@download/ENCFF289UDS.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF509RNF bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF807MUK 734644036 ENCODE Processing Pipeline 6b5947940c3bcf70152e540a66cdc645 https://www.encodeproject.org/files/ENCFF509RNF/@@download/ENCFF509RNF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF699MGL bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 157251960 ENCODE Processing Pipeline bc310f30a9970395b05465c79ea7e36e https://www.encodeproject.org/files/ENCFF699MGL/@@download/ENCFF699MGL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF197TNR bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 523292152 ENCODE Processing Pipeline b6838eaa32cb0dadf989b47966ccfdcc https://www.encodeproject.org/files/ENCFF197TNR/@@download/ENCFF197TNR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF138BYH bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 4568115 ENCODE Processing Pipeline ec1198a4c0a1cd0819201529ef26e465 https://www.encodeproject.org/files/ENCFF138BYH/@@download/ENCFF138BYH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF084RZM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF288RYL 894743 ENCODE Processing Pipeline f7a8b9344743eafc5cb3f625d1b1b1b4 https://www.encodeproject.org/files/ENCFF084RZM/@@download/ENCFF084RZM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF066XDW bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF007UID, ENCFF138BYH, ENCFF440OBY 438480 ENCODE Processing Pipeline 819540d756d42218522ec2e8fd9c0b87 https://www.encodeproject.org/files/ENCFF066XDW/@@download/ENCFF066XDW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF158LVD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066XDW 836291 ENCODE Processing Pipeline a49a2d2f52436919a3900d1d99430bdd https://www.encodeproject.org/files/ENCFF158LVD/@@download/ENCFF158LVD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF073BOW bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 177799447 ENCODE Processing Pipeline 4fa9165ebece769dfc55989fb71c49b7 https://www.encodeproject.org/files/ENCFF073BOW/@@download/ENCFF073BOW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF031ILR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 75417915 ENCODE Processing Pipeline eca6323d9266e67fb0bd4a654945130c https://www.encodeproject.org/files/ENCFF031ILR/@@download/ENCFF031ILR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF796EIP bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF007UID 13166374 ENCODE Processing Pipeline b1f2ba0c86be76470a0e342b68ea1fef https://www.encodeproject.org/files/ENCFF796EIP/@@download/ENCFF796EIP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF478GCJ bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF440OBY 10513660 ENCODE Processing Pipeline 8e38f11a4be88d5968942115c1596df6 https://www.encodeproject.org/files/ENCFF478GCJ/@@download/ENCFF478GCJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF422POF bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 287349906 ENCODE Processing Pipeline 7c9222084e681685fa6a4e600f48883b https://www.encodeproject.org/files/ENCFF422POF/@@download/ENCFF422POF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF440OBY bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 4474802 ENCODE Processing Pipeline 3a3df51f9159bd917167447c0f6804b9 https://www.encodeproject.org/files/ENCFF440OBY/@@download/ENCFF440OBY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF288RYL bed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF007UID, ENCFF138BYH, ENCFF440OBY 389764 ENCODE Processing Pipeline fb2e4bd09e676e2360986c843d0590f1 https://www.encodeproject.org/files/ENCFF288RYL/@@download/ENCFF288RYL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF245CZT bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 260985273 ENCODE Processing Pipeline be4ee9eeb72a086d216e698527a6e896 https://www.encodeproject.org/files/ENCFF245CZT/@@download/ENCFF245CZT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF007UID bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 5277084 ENCODE Processing Pipeline b6556d1943a37b81ad984fa4fc39e864 https://www.encodeproject.org/files/ENCFF007UID/@@download/ENCFF007UID.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF840ZUM bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138BYH 10361783 ENCODE Processing Pipeline 56e5c98978948ffb4afcaf64559d4e6b https://www.encodeproject.org/files/ENCFF840ZUM/@@download/ENCFF840ZUM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF408GSP bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 260438909 ENCODE Processing Pipeline bf2aade11d1337de4581df9fcb83bedb https://www.encodeproject.org/files/ENCFF408GSP/@@download/ENCFF408GSP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF002ROI bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 177824950 ENCODE Processing Pipeline 21b5bf5ffc91fd2861d8419090a7bb88 https://www.encodeproject.org/files/ENCFF002ROI/@@download/ENCFF002ROI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF884FTZ bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 289272983 ENCODE Processing Pipeline 3da0d26e584a81f0a3ed28aa0ea0dea1 https://www.encodeproject.org/files/ENCFF884FTZ/@@download/ENCFF884FTZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF947GBI bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF495XBO 10400026 ENCODE Processing Pipeline 170c8d37a4f6c2dee3ff126b3d1c75d3 https://www.encodeproject.org/files/ENCFF947GBI/@@download/ENCFF947GBI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF460RWM bed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY, ENCFF419RSJ, ENCFF495XBO, ENCFF525RFX 401031 ENCODE Processing Pipeline 4345233362c98082a4820110d4bb3c01 https://www.encodeproject.org/files/ENCFF460RWM/@@download/ENCFF460RWM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF348STZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY, ENCFF419RSJ, ENCFF495XBO, ENCFF525RFX 431986 ENCODE Processing Pipeline b36f59bcb5d64a7cf8c4c9c66f2a5fc7 https://www.encodeproject.org/files/ENCFF348STZ/@@download/ENCFF348STZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF525RFX bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 4476859 ENCODE Processing Pipeline 52fc3f41ef7beaf0a2ee16a749b85eb4 https://www.encodeproject.org/files/ENCFF525RFX/@@download/ENCFF525RFX.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF089PBY bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 5275299 ENCODE Processing Pipeline 964396b6642cb80e9c6ee7645b379671 https://www.encodeproject.org/files/ENCFF089PBY/@@download/ENCFF089PBY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF342MBC bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY 13165464 ENCODE Processing Pipeline 0f708b6195ba58d0e3234525406fc77f https://www.encodeproject.org/files/ENCFF342MBC/@@download/ENCFF342MBC.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF591HVR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 75339962 ENCODE Processing Pipeline c2654efa235e0a08673fedadc1cff14e https://www.encodeproject.org/files/ENCFF591HVR/@@download/ENCFF591HVR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF495XBO bed narrowPeak peaks and background as input for IDR ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 4604839 ENCODE Processing Pipeline 74725a016cbadfb45e59c7508331d7d8 https://www.encodeproject.org/files/ENCFF495XBO/@@download/ENCFF495XBO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF370YXY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF460RWM 912369 ENCODE Processing Pipeline e3d746241d568d362e5f7c9f083e2d43 https://www.encodeproject.org/files/ENCFF370YXY/@@download/ENCFF370YXY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF835KDR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 158078537 ENCODE Processing Pipeline 6baecfba475945a4727f2cdce43c8a35 https://www.encodeproject.org/files/ENCFF835KDR/@@download/ENCFF835KDR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF256TBW bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 526908891 ENCODE Processing Pipeline 5444514c91195bdd2a8841b605981c4b https://www.encodeproject.org/files/ENCFF256TBW/@@download/ENCFF256TBW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF845JOF bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF525RFX 10513700 ENCODE Processing Pipeline 4ddfa52b85c9552049c61d7577310cff https://www.encodeproject.org/files/ENCFF845JOF/@@download/ENCFF845JOF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF093NZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF348STZ 824010 ENCODE Processing Pipeline f44e4db74876c65c4dbb5cf8e1e6e9df https://www.encodeproject.org/files/ENCFF093NZJ/@@download/ENCFF093NZJ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF328YGT bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF862QDQ 1355078824 ENCODE Processing Pipeline d51942e27bfc0c308981318119b3d16b https://www.encodeproject.org/files/ENCFF328YGT/@@download/ENCFF328YGT.bam hg19 released antibody characterized with exemption, low read depth ENCFF028TLV bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF807MUK 1474059950 ENCODE Processing Pipeline edb1c5d54d25c020733371f0b97ef98f https://www.encodeproject.org/files/ENCFF028TLV/@@download/ENCFF028TLV.bam hg19 released antibody characterized with exemption, low read depth ENCFF862QDQ fastq reads ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1291003577 Richard Myers, HAIB 08e3a4bb9de3b38325a675afe36d71ad SRA:SRR5339419 https://www.encodeproject.org/files/ENCFF862QDQ/@@download/ENCFF862QDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF090NGH/ released antibody characterized with exemption, low read depth ENCFF221TOX fastq reads ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1357461397 Richard Myers, HAIB 6401ef9b83258152f99c6e0b021fdd52 SRA:SRR5339420 https://www.encodeproject.org/files/ENCFF221TOX/@@download/ENCFF221TOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF180PND/, /files/ENCFF381XXA/ released antibody characterized with exemption, low read depth ENCFF748DIW bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF862QDQ 765457821 ENCODE Processing Pipeline c8984cb355c0e48c15ff5d268459c790 https://www.encodeproject.org/files/ENCFF748DIW/@@download/ENCFF748DIW.bam hg19 released antibody characterized with exemption, low read depth ENCFF328CQA bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF807MUK 1059935076 ENCODE Processing Pipeline b27f486549583a87718892b6f276c619 https://www.encodeproject.org/files/ENCFF328CQA/@@download/ENCFF328CQA.bam hg19 released antibody characterized with exemption, low read depth ENCFF889DQQ bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 842665385 ENCODE Processing Pipeline 2f1d3d7b12cb13afc9aeb9eb37d4571a https://www.encodeproject.org/files/ENCFF889DQQ/@@download/ENCFF889DQQ.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF634OUT bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 787851311 ENCODE Processing Pipeline dd04b7437a771ba008a33e1f3f1ba5d7 https://www.encodeproject.org/files/ENCFF634OUT/@@download/ENCFF634OUT.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF325AYV bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 695339973 ENCODE Processing Pipeline e9fc0a224a51cda279feb3642b07e558 https://www.encodeproject.org/files/ENCFF325AYV/@@download/ENCFF325AYV.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF269OKC bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 523603722 ENCODE Processing Pipeline 40c224470709d2a5106de329eb7c3503 https://www.encodeproject.org/files/ENCFF269OKC/@@download/ENCFF269OKC.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF146RPS bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF389NMB 13322346 ENCODE Processing Pipeline 6ae2251fecc619b834e2997d74f4424f https://www.encodeproject.org/files/ENCFF146RPS/@@download/ENCFF146RPS.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF273ZDS bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 6189524 ENCODE Processing Pipeline 4c1449a60b201cba321fb887fa5900c1 https://www.encodeproject.org/files/ENCFF273ZDS/@@download/ENCFF273ZDS.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF278OPV bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF838ABE 13229914 ENCODE Processing Pipeline 1b4e67d0a16849bb571ace21449fe4bf https://www.encodeproject.org/files/ENCFF278OPV/@@download/ENCFF278OPV.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF295FCL bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 961980690 ENCODE Processing Pipeline 1c7ccf0755cab7e5ef2ca3cf3f6565c3 https://www.encodeproject.org/files/ENCFF295FCL/@@download/ENCFF295FCL.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF327KPH bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 1023543817 ENCODE Processing Pipeline eff04674d8189dfcdab691b82b03bfa6 https://www.encodeproject.org/files/ENCFF327KPH/@@download/ENCFF327KPH.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF838ABE bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 6510385 ENCODE Processing Pipeline fb26371bb0f418ebd525bfad0e747028 https://www.encodeproject.org/files/ENCFF838ABE/@@download/ENCFF838ABE.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF389NMB bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 6897786 ENCODE Processing Pipeline b87cc44f43fa933e8cb605b912bbdffb https://www.encodeproject.org/files/ENCFF389NMB/@@download/ENCFF389NMB.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF154VEE bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF273ZDS 13399987 ENCODE Processing Pipeline 81c1c6e130e8d37be8697d25b2ebeef3 https://www.encodeproject.org/files/ENCFF154VEE/@@download/ENCFF154VEE.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF010SVS bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF862QDQ 1359618510 ENCODE Processing Pipeline fc67f918c499fdf6dc3eece4cb1a3619 https://www.encodeproject.org/files/ENCFF010SVS/@@download/ENCFF010SVS.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF870XDV bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF643CGH 1477620199 ENCODE Processing Pipeline 6e132f0fcbf4703b8aa52db5031d10cf https://www.encodeproject.org/files/ENCFF870XDV/@@download/ENCFF870XDV.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF127DWU bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF862QDQ 768707575 ENCODE Processing Pipeline ab554e2454afe47ba208a1a45fa727f0 https://www.encodeproject.org/files/ENCFF127DWU/@@download/ENCFF127DWU.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF890TFD bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF643CGH 1065261651 ENCODE Processing Pipeline dde22eb23ff7454fe954b5ee07381ddf https://www.encodeproject.org/files/ENCFF890TFD/@@download/ENCFF890TFD.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF994DRD bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 779004221 ENCODE Processing Pipeline ea45f1dd3ef82686731ec08992eb2b3d https://www.encodeproject.org/files/ENCFF994DRD/@@download/ENCFF994DRD.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF273DCX bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 986128164 ENCODE Processing Pipeline c6a71b07d8d6082ffaa85b0ea6fa878c https://www.encodeproject.org/files/ENCFF273DCX/@@download/ENCFF273DCX.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF729KEI bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 1017242398 ENCODE Processing Pipeline c965d2dd69e4a6fb598bb626c5823ba3 https://www.encodeproject.org/files/ENCFF729KEI/@@download/ENCFF729KEI.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF819GZC bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 696688768 ENCODE Processing Pipeline 7010504d15ab0f5ddde4652c1db729ac https://www.encodeproject.org/files/ENCFF819GZC/@@download/ENCFF819GZC.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF242RTA bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 508413746 ENCODE Processing Pipeline d3ca5c1b4385b376e2353b8657365754 https://www.encodeproject.org/files/ENCFF242RTA/@@download/ENCFF242RTA.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF930HBS bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 1005662567 ENCODE Processing Pipeline adc189b586d25e9b9e1e956384a870db https://www.encodeproject.org/files/ENCFF930HBS/@@download/ENCFF930HBS.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF219QPR bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF758YNV 13372096 ENCODE Processing Pipeline 7cd777aee8ead7975ff5dd6ee47a9d6b https://www.encodeproject.org/files/ENCFF219QPR/@@download/ENCFF219QPR.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF919MOX bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 6355816 ENCODE Processing Pipeline ea1ff62e038fdfede8feeb236c14435e https://www.encodeproject.org/files/ENCFF919MOX/@@download/ENCFF919MOX.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF414HSP bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF919MOX 13203451 ENCODE Processing Pipeline faf08a7583ff7b30cb26b6e29d7165a8 https://www.encodeproject.org/files/ENCFF414HSP/@@download/ENCFF414HSP.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF097WEC bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 6775463 ENCODE Processing Pipeline 322f3f574a126800de6b85e7d7631f94 https://www.encodeproject.org/files/ENCFF097WEC/@@download/ENCFF097WEC.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF758YNV bed narrowPeak peaks and background as input for IDR ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 5900512 ENCODE Processing Pipeline ca0652e00c4645dd6c4d0798080dab6c https://www.encodeproject.org/files/ENCFF758YNV/@@download/ENCFF758YNV.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF989DMQ bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC 13351735 ENCODE Processing Pipeline 4bdb188a8cc681aecf3fdfec894c6d7d https://www.encodeproject.org/files/ENCFF989DMQ/@@download/ENCFF989DMQ.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF229XLK bigBed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070SOX 792956 ENCODE Processing Pipeline b09e13c00a051ac9777d37749592512e https://www.encodeproject.org/files/ENCFF229XLK/@@download/ENCFF229XLK.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF013PBU bed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC, ENCFF419RSJ, ENCFF758YNV, ENCFF919MOX 363592 ENCODE Processing Pipeline 1553a710bfa67ca0e1dd06818a2a2b47 https://www.encodeproject.org/files/ENCFF013PBU/@@download/ENCFF013PBU.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF012HPV bigBed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF013PBU 754252 ENCODE Processing Pipeline 005f577663d2792df91f64b4779bab56 https://www.encodeproject.org/files/ENCFF012HPV/@@download/ENCFF012HPV.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF070SOX bed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC, ENCFF419RSJ, ENCFF758YNV, ENCFF919MOX 389087 ENCODE Processing Pipeline 68fb55ca044b0b63e2826cc780bce97f https://www.encodeproject.org/files/ENCFF070SOX/@@download/ENCFF070SOX.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF773EXP bed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF273ZDS, ENCFF389NMB, ENCFF838ABE 308453 ENCODE Processing Pipeline 5a747a760a5777ccaa80f3becbd61f2c https://www.encodeproject.org/files/ENCFF773EXP/@@download/ENCFF773EXP.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF788LSH bed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF273ZDS, ENCFF389NMB, ENCFF838ABE 324597 ENCODE Processing Pipeline 63ff827b2e1cbb2c9e897d6d4273086c https://www.encodeproject.org/files/ENCFF788LSH/@@download/ENCFF788LSH.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF741OJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF773EXP 541265 ENCODE Processing Pipeline bb9e413975b4070784dfa9cda53f9387 https://www.encodeproject.org/files/ENCFF741OJZ/@@download/ENCFF741OJZ.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF298WZV bigBed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF788LSH 562614 ENCODE Processing Pipeline 920d8806b19a39ba983d7ee87e4be850 https://www.encodeproject.org/files/ENCFF298WZV/@@download/ENCFF298WZV.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF001HHN bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHX 279419288 John Stamatoyannopoulos, UW 6bf57205ed4b094c5435d80ac98449de https://www.encodeproject.org/files/ENCFF001HHN/@@download/ENCFF001HHN.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHO bigBed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPJ 2403599 John Stamatoyannopoulos, UW 124f9d469d55a0bfe806c83582c9126c https://www.encodeproject.org/files/ENCFF001HHO/@@download/ENCFF001HHO.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHP bigBed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPK 3536234 John Stamatoyannopoulos, UW 84c089cb78dd40d06038783021090c5f https://www.encodeproject.org/files/ENCFF001HHP/@@download/ENCFF001HHP.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHQ bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPL 817543 John Stamatoyannopoulos, UW ec956cc1f63b91d95d454e606a3bd300 https://www.encodeproject.org/files/ENCFF001HHQ/@@download/ENCFF001HHQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHR bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPM 1082568 John Stamatoyannopoulos, UW 416d2c3bd4b8768b8cf84a37272bbe44 https://www.encodeproject.org/files/ENCFF001HHR/@@download/ENCFF001HHR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHS bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HIA 715536264 John Stamatoyannopoulos, UW 64f1eb5bcb0ed376216ffe589350d703 https://www.encodeproject.org/files/ENCFF001HHS/@@download/ENCFF001HHS.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHT bigWig raw signal ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 59582612 John Stamatoyannopoulos, UW 8168210048a5192e2e06bc4fa9a8e4b3 https://www.encodeproject.org/files/ENCFF001HHT/@@download/ENCFF001HHT.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHV bigWig raw signal ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 145558312 John Stamatoyannopoulos, UW da7a1e071607547b403f86feac3b499f https://www.encodeproject.org/files/ENCFF001HHV/@@download/ENCFF001HHV.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HHX fastq reads ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 479087832 John Stamatoyannopoulos, UW 81eedfd11fcdb0d7dc55f4c7a0d4dc37 https://www.encodeproject.org/files/ENCFF001HHX/@@download/ENCFF001HHX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HID/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001HIA fastq reads ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1109985066 John Stamatoyannopoulos, UW 9ab5067b99eef80955a450838000d2c2 https://www.encodeproject.org/files/ENCFF001HIA/@@download/ENCFF001HIA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HID/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001XPJ bed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 1581600 John Stamatoyannopoulos, UW e6745c2b6937d3592ff14b22b98eb564 https://www.encodeproject.org/files/ENCFF001XPJ/@@download/ENCFF001XPJ.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001XPK bed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 2508567 John Stamatoyannopoulos, UW 6e91846731886d8f6409fd5264193bd5 https://www.encodeproject.org/files/ENCFF001XPK/@@download/ENCFF001XPK.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001XPL bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 546105 John Stamatoyannopoulos, UW 05c13c8ad1f8447216514287c9a8cbf9 https://www.encodeproject.org/files/ENCFF001XPL/@@download/ENCFF001XPL.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF001XPM bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 768874 John Stamatoyannopoulos, UW db6a022f65cca2f4255919a9a665af29 https://www.encodeproject.org/files/ENCFF001XPM/@@download/ENCFF001XPM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF002DCM bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HHN, ENCFF001HHS 826017 ENCODE Consortium Analysis Working Group a8c651b28667a589dbf0c29f9e45ab01 https://www.encodeproject.org/files/ENCFF002DCM/@@download/ENCFF002DCM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF944NIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCM 1748178 ENCODE Consortium bbc18594ff049e2f926267a70ddabcb0 https://www.encodeproject.org/files/ENCFF944NIQ/@@download/ENCFF944NIQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF607GOG bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF807MUK 183423489 ENCODE Processing Pipeline b4ba9ee8399ed4012d5a2ff12000c928 https://www.encodeproject.org/files/ENCFF607GOG/@@download/ENCFF607GOG.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF298INA bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF807MUK 495330153 ENCODE Processing Pipeline cd153d1e8594b208107c3decd7b69801 https://www.encodeproject.org/files/ENCFF298INA/@@download/ENCFF298INA.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF172UCS bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF807MUK 1205584402 ENCODE Processing Pipeline 01f2b0cd052fa199f1534a89f7f02606 https://www.encodeproject.org/files/ENCFF172UCS/@@download/ENCFF172UCS.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF412PHP bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF807MUK 631731985 ENCODE Processing Pipeline 8b6466997936d72b8d187b8dcc3543c0 https://www.encodeproject.org/files/ENCFF412PHP/@@download/ENCFF412PHP.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF913XVH bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF643CGH 496213877 ENCODE Processing Pipeline 1334d889d6fc02934c67bcf53c44b52e https://www.encodeproject.org/files/ENCFF913XVH/@@download/ENCFF913XVH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF612FTS bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF643CGH 183394902 ENCODE Processing Pipeline d5fd44a12f628acb802e8364d2f463fa https://www.encodeproject.org/files/ENCFF612FTS/@@download/ENCFF612FTS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF629BGK bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF643CGH 1207814087 ENCODE Processing Pipeline d5be4167ab78a1991d34e4cda56e527b https://www.encodeproject.org/files/ENCFF629BGK/@@download/ENCFF629BGK.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF614VZE bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF643CGH 631888121 ENCODE Processing Pipeline bd7f32735cd4b78edf458aee1d5d214d https://www.encodeproject.org/files/ENCFF614VZE/@@download/ENCFF614VZE.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF144KUK bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 225671603 ENCODE Processing Pipeline 505b62fd3727db950a56667672a6a018 https://www.encodeproject.org/files/ENCFF144KUK/@@download/ENCFF144KUK.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF417LXA bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 272043579 ENCODE Processing Pipeline bc25a1ac5688a244b5984abee1f51ff4 https://www.encodeproject.org/files/ENCFF417LXA/@@download/ENCFF417LXA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF913SOI bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 281456709 ENCODE Processing Pipeline bdd98e035376105acec8d5cc3715e73c https://www.encodeproject.org/files/ENCFF913SOI/@@download/ENCFF913SOI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF290FDG bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 78319969 ENCODE Processing Pipeline c30ead6e3ff9b81416801d2da8066749 https://www.encodeproject.org/files/ENCFF290FDG/@@download/ENCFF290FDG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF376GAM bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 219454869 ENCODE Processing Pipeline a084985853161edd0e7059b59ee8bb20 https://www.encodeproject.org/files/ENCFF376GAM/@@download/ENCFF376GAM.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF886KRA bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 277028426 ENCODE Processing Pipeline 0403f638f30b0bcdabb783e9c73bac2c https://www.encodeproject.org/files/ENCFF886KRA/@@download/ENCFF886KRA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF303UAB bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 1748719 ENCODE Processing Pipeline b63e8c0ee9f5f7eb5feb22f98c885a56 https://www.encodeproject.org/files/ENCFF303UAB/@@download/ENCFF303UAB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF559IXF bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 3921477 ENCODE Processing Pipeline d2f733fe91eb768e2544200a7b2f1c49 https://www.encodeproject.org/files/ENCFF559IXF/@@download/ENCFF559IXF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF918HTJ bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 4163568 ENCODE Processing Pipeline ef3b80a1842c373d47bb829d5ab41e46 https://www.encodeproject.org/files/ENCFF918HTJ/@@download/ENCFF918HTJ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF218VZA bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF303UAB 3747249 ENCODE Processing Pipeline dc8196cdf293958a36c4654099dd716d https://www.encodeproject.org/files/ENCFF218VZA/@@download/ENCFF218VZA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF935TEV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF963PJY 1082306 ENCODE Processing Pipeline ec3428b2d5b49c9e6072e20525b75b83 https://www.encodeproject.org/files/ENCFF935TEV/@@download/ENCFF935TEV.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF481UHI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF473RXY 1182993 ENCODE Processing Pipeline 19759806b970b54b44c3d5def633fbe2 https://www.encodeproject.org/files/ENCFF481UHI/@@download/ENCFF481UHI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF428VWG bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF559IXF 7848739 ENCODE Processing Pipeline acb4ef1758722fa86debba3975301e98 https://www.encodeproject.org/files/ENCFF428VWG/@@download/ENCFF428VWG.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF560OGB bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF918HTJ 10309538 ENCODE Processing Pipeline 537277502366d7da74bbfe8e63f0aa73 https://www.encodeproject.org/files/ENCFF560OGB/@@download/ENCFF560OGB.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF963PJY bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 573102 ENCODE Processing Pipeline 35832d7990ec7d3240e3ddd9537b4b4d https://www.encodeproject.org/files/ENCFF963PJY/@@download/ENCFF963PJY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF473RXY bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 645089 ENCODE Processing Pipeline 9263eb7386faf2870ea728ae87b40a30 https://www.encodeproject.org/files/ENCFF473RXY/@@download/ENCFF473RXY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF239OQV bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 4165448 ENCODE Processing Pipeline 0b42ebbeff9603f5d9966a7d7466ef63 https://www.encodeproject.org/files/ENCFF239OQV/@@download/ENCFF239OQV.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF906GEW bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 573881 ENCODE Processing Pipeline 9ef783fa7596e57208106836c453f8ef https://www.encodeproject.org/files/ENCFF906GEW/@@download/ENCFF906GEW.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF010KNM bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 244015115 ENCODE Processing Pipeline 260030575d6d85f021e1b9575f2128ed https://www.encodeproject.org/files/ENCFF010KNM/@@download/ENCFF010KNM.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF169QTG bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 272040626 ENCODE Processing Pipeline d48a6343611509e6a9f4db5efed26f9d https://www.encodeproject.org/files/ENCFF169QTG/@@download/ENCFF169QTG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF906HMR bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 281539616 ENCODE Processing Pipeline 5d1cc9be42c0ef06a2ec3ca9d86abf06 https://www.encodeproject.org/files/ENCFF906HMR/@@download/ENCFF906HMR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF080RJS bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 77612715 ENCODE Processing Pipeline c22115a36e785ee3385425dffc9696f3 https://www.encodeproject.org/files/ENCFF080RJS/@@download/ENCFF080RJS.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF039MCF bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 218554798 ENCODE Processing Pipeline 70119b24169e0e2331ff43e57520bae5 https://www.encodeproject.org/files/ENCFF039MCF/@@download/ENCFF039MCF.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF852CRG bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 274309648 ENCODE Processing Pipeline 276c561593a5e32f0cab8dee20733ebc https://www.encodeproject.org/files/ENCFF852CRG/@@download/ENCFF852CRG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF412MBV bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 1758149 ENCODE Processing Pipeline 0da10b68fa0cf613394bae9b50b914d6 https://www.encodeproject.org/files/ENCFF412MBV/@@download/ENCFF412MBV.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF507TTK bed narrowPeak peaks and background as input for IDR ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 3925685 ENCODE Processing Pipeline 869e8bd441e4a89337e943d4b48f1314 https://www.encodeproject.org/files/ENCFF507TTK/@@download/ENCFF507TTK.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF356JFU bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412MBV 3772727 ENCODE Processing Pipeline e93433a2e6ff211a9e109690058f5aab https://www.encodeproject.org/files/ENCFF356JFU/@@download/ENCFF356JFU.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF299SWN bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF507TTK 7851216 ENCODE Processing Pipeline 24a7273e44a52c57d765dffb8b24ef80 https://www.encodeproject.org/files/ENCFF299SWN/@@download/ENCFF299SWN.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF628KIB bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV 10335823 ENCODE Processing Pipeline 2ba1c13f3d28f48c3c62d927379b1a83 https://www.encodeproject.org/files/ENCFF628KIB/@@download/ENCFF628KIB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF364HEO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF906GEW 1085250 ENCODE Processing Pipeline 1f8e15e98532c8f52f9f3d270fb98b2a https://www.encodeproject.org/files/ENCFF364HEO/@@download/ENCFF364HEO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF023RJC bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 647585 ENCODE Processing Pipeline 81b751432432db540066a8343a415cda https://www.encodeproject.org/files/ENCFF023RJC/@@download/ENCFF023RJC.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF848XDB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF023RJC 1188332 ENCODE Processing Pipeline e59aed9793782f99bb2a937811858d61 https://www.encodeproject.org/files/ENCFF848XDB/@@download/ENCFF848XDB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms extremely low read depth ENCFF000ARL bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000ARU 606001190 Bradley Bernstein, Broad 57f58669d77e727da5e63061710810e3 https://www.encodeproject.org/files/ENCFF000ARL/@@download/ENCFF000ARL.bam hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000ARM bigBed broadPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SUC 1707275 Bradley Bernstein, Broad 9e73b13df8c17f830201ba7cb3c577cc https://www.encodeproject.org/files/ENCFF000ARM/@@download/ENCFF000ARM.bigBed hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000ARN bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000ASA 2021473991 Bradley Bernstein, Broad 1cdb9405911ae67a064eabeb1e19158c https://www.encodeproject.org/files/ENCFF000ARN/@@download/ENCFF000ARN.bam hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000ARQ bigWig signal ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 532114514 Bradley Bernstein, Broad 9b43df9e621c987a58b53cf2e2e48102 https://www.encodeproject.org/files/ENCFF000ARQ/@@download/ENCFF000ARQ.bigWig hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth ENCFF000ARU fastq reads ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 913440984 Bradley Bernstein, Broad 7b09ce56796a67b4666945af22085cee https://www.encodeproject.org/files/ENCFF000ARU/@@download/ENCFF000ARU.fastq.gz Illumina Genome Analyzer /files/ENCFF000ARK/ released borderline replicate concordance, low read length, inconsistent control read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000ASA fastq reads ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 2479370857 Bradley Bernstein, Broad e45eeadb049999f79e9bca0df2fcf6db https://www.encodeproject.org/files/ENCFF000ASA/@@download/ENCFF000ASA.fastq.gz Illumina Genome Analyzer /files/ENCFF000ARO/ released borderline replicate concordance, low read length, inconsistent control read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001SUC bed broadPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 999864 Bradley Bernstein, Broad a596c652fc59eccb2f7f125cd2f8b4dc https://www.encodeproject.org/files/ENCFF001SUC/@@download/ENCFF001SUC.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth ENCFF002CDQ bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 67149 ENCODE Consortium Analysis Working Group a83818c95d19d511da850dc44deb4452 https://www.encodeproject.org/files/ENCFF002CDQ/@@download/ENCFF002CDQ.bed.gz hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from insufficient read depth ENCFF422CPC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CDQ 250560 ENCODE Consortium 7c016d1bacb9eff7b62dc79b2263ab51 https://www.encodeproject.org/files/ENCFF422CPC/@@download/ENCFF422CPC.bigBed hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF689FFZ bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF807MUK 494898473 ENCODE Processing Pipeline e1436c87690cfd58d4224e97becd9a41 https://www.encodeproject.org/files/ENCFF689FFZ/@@download/ENCFF689FFZ.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF916AYY bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF807MUK 1083821507 ENCODE Processing Pipeline 54a9aee63e77fcead9b00e54576d047e https://www.encodeproject.org/files/ENCFF916AYY/@@download/ENCFF916AYY.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF885ZDW bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF643CGH 1086174657 ENCODE Processing Pipeline 6d843a831ecb8ade114cc2a5730b3bd7 https://www.encodeproject.org/files/ENCFF885ZDW/@@download/ENCFF885ZDW.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF385WMX bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF807MUK 1635702472 ENCODE Processing Pipeline bf85c6c8ff39aff5ba7d2783a50077e7 https://www.encodeproject.org/files/ENCFF385WMX/@@download/ENCFF385WMX.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF621CEP bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF643CGH 495799350 ENCODE Processing Pipeline 05ea0ec6a0f159cfe5c10565a9cd9e1d https://www.encodeproject.org/files/ENCFF621CEP/@@download/ENCFF621CEP.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF639DUN bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF807MUK 3049195128 ENCODE Processing Pipeline f21b16c0c98483362ec9fd4828bc644f https://www.encodeproject.org/files/ENCFF639DUN/@@download/ENCFF639DUN.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF731DXP bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF643CGH 3059643402 ENCODE Processing Pipeline 8b43aea6b292171f7e3c7b05236e1ca3 https://www.encodeproject.org/files/ENCFF731DXP/@@download/ENCFF731DXP.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF735FDV bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF643CGH 1637423189 ENCODE Processing Pipeline ac2ee70b74f4766f57abf8945e32518e https://www.encodeproject.org/files/ENCFF735FDV/@@download/ENCFF735FDV.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF281QHE bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 283417740 ENCODE Processing Pipeline f2b96006766ef4e23c0f4d0e25160f52 https://www.encodeproject.org/files/ENCFF281QHE/@@download/ENCFF281QHE.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF775CVC bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 597495034 ENCODE Processing Pipeline 78b92654a86b494b7f61255e15db32a3 https://www.encodeproject.org/files/ENCFF775CVC/@@download/ENCFF775CVC.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF410SZR bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 594710127 ENCODE Processing Pipeline 2f392ece81c78eaef899f704d613b20e https://www.encodeproject.org/files/ENCFF410SZR/@@download/ENCFF410SZR.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF244PEX bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178CPV 7652403 ENCODE Processing Pipeline 3b1cc4690f0c180329290626c1ccf604 https://www.encodeproject.org/files/ENCFF244PEX/@@download/ENCFF244PEX.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF437BUE bed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178CPV, ENCFF411KUR, ENCFF859FLD 36495 ENCODE Processing Pipeline 11559363910cc493b4c81219baae602c https://www.encodeproject.org/files/ENCFF437BUE/@@download/ENCFF437BUE.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF134RHC bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF437BUE 148909 ENCODE Processing Pipeline e08e521290d1711382698910d4f2f361 https://www.encodeproject.org/files/ENCFF134RHC/@@download/ENCFF134RHC.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF382ZVK bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 172102474 ENCODE Processing Pipeline a5a762ba21a38b8d47476cac495f75fb https://www.encodeproject.org/files/ENCFF382ZVK/@@download/ENCFF382ZVK.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF318GHR bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 171375246 ENCODE Processing Pipeline 2ff000a3c749c852f11b642d8a1d749b https://www.encodeproject.org/files/ENCFF318GHR/@@download/ENCFF318GHR.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF919ADC bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF081ZWY 10575880 ENCODE Processing Pipeline 94fac15790688ccbbb39e2d96cda08a2 https://www.encodeproject.org/files/ENCFF919ADC/@@download/ENCFF919ADC.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF723CXZ bed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF081ZWY, ENCFF286JCT, ENCFF419RSJ, ENCFF625HQF 36386 ENCODE Processing Pipeline 2b73fe02b69aa3a6ba9c982fbdd92d2a https://www.encodeproject.org/files/ENCFF723CXZ/@@download/ENCFF723CXZ.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF908OCL bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 105254100 ENCODE Processing Pipeline b6496916dce25d953c1e26ec23102aee https://www.encodeproject.org/files/ENCFF908OCL/@@download/ENCFF908OCL.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF286JCT bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 3582568 ENCODE Processing Pipeline 5e770615a051e3bb5c6e7c649226bf86 https://www.encodeproject.org/files/ENCFF286JCT/@@download/ENCFF286JCT.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF615NYO bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF081ZWY, ENCFF286JCT, ENCFF419RSJ, ENCFF625HQF 41006 ENCODE Processing Pipeline 32b8833270ef5be47f05697a7ff1751a https://www.encodeproject.org/files/ENCFF615NYO/@@download/ENCFF615NYO.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF273NDY bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 259036665 ENCODE Processing Pipeline 4f70b67fcc2b31cc0a9167464c98dc85 https://www.encodeproject.org/files/ENCFF273NDY/@@download/ENCFF273NDY.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF517VVT bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 105001888 ENCODE Processing Pipeline 0ce95a036ebda8bf0b7565b952a2da96 https://www.encodeproject.org/files/ENCFF517VVT/@@download/ENCFF517VVT.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF522HVU bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 258933697 ENCODE Processing Pipeline 1984511a173fc24daa835a81dfed84a7 https://www.encodeproject.org/files/ENCFF522HVU/@@download/ENCFF522HVU.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF004QWG bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 258788404 ENCODE Processing Pipeline abda0088c18e00f48ebf0c6891e2bd8e https://www.encodeproject.org/files/ENCFF004QWG/@@download/ENCFF004QWG.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF728SMW bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 413551974 ENCODE Processing Pipeline 3013c8bb45111a4118c7528ec6b3d377 https://www.encodeproject.org/files/ENCFF728SMW/@@download/ENCFF728SMW.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF419RDX bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 414924882 ENCODE Processing Pipeline 59f678ddb0980ecdd75e539d6a3edaf1 https://www.encodeproject.org/files/ENCFF419RDX/@@download/ENCFF419RDX.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF081ZWY bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 3872993 ENCODE Processing Pipeline 0d16cfb165c5aee10d4982d2b5775eed https://www.encodeproject.org/files/ENCFF081ZWY/@@download/ENCFF081ZWY.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF625HQF bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 4511195 ENCODE Processing Pipeline 1b517fc4c23a2c2cdcffc4493c0c7aef https://www.encodeproject.org/files/ENCFF625HQF/@@download/ENCFF625HQF.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF166IXY bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF286JCT 7462901 ENCODE Processing Pipeline 02a81476f60bafeecef54c0f909bd8cc https://www.encodeproject.org/files/ENCFF166IXY/@@download/ENCFF166IXY.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF664MXA bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF625HQF 11025691 ENCODE Processing Pipeline fc2cfe436bbd75d07fee18f4f7388289 https://www.encodeproject.org/files/ENCFF664MXA/@@download/ENCFF664MXA.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF847AAW bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF723CXZ 148864 ENCODE Processing Pipeline 60c87532cf304ea07e111bb79273ff59 https://www.encodeproject.org/files/ENCFF847AAW/@@download/ENCFF847AAW.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF577NKT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF615NYO 159344 ENCODE Processing Pipeline c415c7a0204ff1fac1e40827cac05b5a https://www.encodeproject.org/files/ENCFF577NKT/@@download/ENCFF577NKT.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF178CPV bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 3611423 ENCODE Processing Pipeline aa57a289d0f83c5406354f8f0fbef9cf https://www.encodeproject.org/files/ENCFF178CPV/@@download/ENCFF178CPV.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF411KUR bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 3774499 ENCODE Processing Pipeline 742a8111971ca27407f29349b300b741 https://www.encodeproject.org/files/ENCFF411KUR/@@download/ENCFF411KUR.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF859FLD bed narrowPeak peaks and background as input for IDR ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 4513352 ENCODE Processing Pipeline ca6474437aaa29e3bb314b8bb02fc616 https://www.encodeproject.org/files/ENCFF859FLD/@@download/ENCFF859FLD.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF131RRB bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF411KUR 10423837 ENCODE Processing Pipeline 81869d7da9bb4989f15bec736f65b730 https://www.encodeproject.org/files/ENCFF131RRB/@@download/ENCFF131RRB.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF076LAP bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF859FLD 11025744 ENCODE Processing Pipeline 423c2a832dc407d82691d9e4836dc3fb https://www.encodeproject.org/files/ENCFF076LAP/@@download/ENCFF076LAP.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF413QYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF678JII 151427 ENCODE Processing Pipeline 034aa0e63dc3ad603daeb9bad1aac3e2 https://www.encodeproject.org/files/ENCFF413QYZ/@@download/ENCFF413QYZ.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF678JII bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178CPV, ENCFF411KUR, ENCFF859FLD 37189 ENCODE Processing Pipeline e89a61b52a33a3db505994d17393df9a https://www.encodeproject.org/files/ENCFF678JII/@@download/ENCFF678JII.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000NYC bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYK 763139690 Richard Myers, HAIB e496d25a3a25b0a3311fe3a52b11646d https://www.encodeproject.org/files/ENCFF000NYC/@@download/ENCFF000NYC.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NYD bigBed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXS 200961 Richard Myers, HAIB 222306f35061a6607873f0c2e10d78cf https://www.encodeproject.org/files/ENCFF000NYD/@@download/ENCFF000NYD.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NYE bigBed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXT 168287 Richard Myers, HAIB 513a4ce93ec1e04dc661bda834dbae41 https://www.encodeproject.org/files/ENCFF000NYE/@@download/ENCFF000NYE.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NYF bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NYN 976393022 Richard Myers, HAIB a0db4c4f98b9b5f42007955b2afaa751 https://www.encodeproject.org/files/ENCFF000NYF/@@download/ENCFF000NYF.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NYG bigWig raw signal ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 8687856 Richard Myers, HAIB 326175949a41294491bb704a219a1cdd https://www.encodeproject.org/files/ENCFF000NYG/@@download/ENCFF000NYG.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NYI bigWig raw signal ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 6190287 Richard Myers, HAIB a55185f2b42444c4310e801dbb25a05a https://www.encodeproject.org/files/ENCFF000NYI/@@download/ENCFF000NYI.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NYK fastq reads ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 612423185 Richard Myers, HAIB 10a1b8c37dfe6fc057631dc03acee9d3 https://www.encodeproject.org/files/ENCFF000NYK/@@download/ENCFF000NYK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NYN fastq reads ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1021427875 Richard Myers, HAIB 23f72aa666973d48f41a7bc3113e6ee0 https://www.encodeproject.org/files/ENCFF000NYN/@@download/ENCFF000NYN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODO/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001TXS bed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 98767 Richard Myers, HAIB 5be290b00c270f6f6dec142726dfae9d https://www.encodeproject.org/files/ENCFF001TXS/@@download/ENCFF001TXS.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TXT bed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 89336 Richard Myers, HAIB a20d72c70d2e82be2b7bdf75e03d3c1f https://www.encodeproject.org/files/ENCFF001TXT/@@download/ENCFF001TXT.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CHH bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 143093 ENCODE Consortium Analysis Working Group 044de7bd595573dff64ec47830e92bf3 https://www.encodeproject.org/files/ENCFF002CHH/@@download/ENCFF002CHH.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF251ELV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHH 357623 ENCODE Consortium 06d1266c5a02e4d189525d5e2a77da78 https://www.encodeproject.org/files/ENCFF251ELV/@@download/ENCFF251ELV.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF471UKN bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF643CGH 800235482 ENCODE Processing Pipeline 07bee68494af308a80fa981ad85ec93f https://www.encodeproject.org/files/ENCFF471UKN/@@download/ENCFF471UKN.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF894EID bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF643CGH 473312374 ENCODE Processing Pipeline 54a9b1c6eb2cb3ae493132121dbe776e https://www.encodeproject.org/files/ENCFF894EID/@@download/ENCFF894EID.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF407MEC bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF643CGH 1040754385 ENCODE Processing Pipeline 765f0dfa19820083c259e276b929d703 https://www.encodeproject.org/files/ENCFF407MEC/@@download/ENCFF407MEC.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF569QEN bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF643CGH 521791845 ENCODE Processing Pipeline 80b445f0a422ba4c8c19d56dd7bcba4e https://www.encodeproject.org/files/ENCFF569QEN/@@download/ENCFF569QEN.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF753DEQ bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF807MUK 797739085 ENCODE Processing Pipeline 8a7b8c91aaf455558a8a7283d94898b1 https://www.encodeproject.org/files/ENCFF753DEQ/@@download/ENCFF753DEQ.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF929UNL bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF807MUK 1040220372 ENCODE Processing Pipeline e7489ba9c425374b3c1fef5f5b3dbd1e https://www.encodeproject.org/files/ENCFF929UNL/@@download/ENCFF929UNL.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF549FFR bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF807MUK 470964396 ENCODE Processing Pipeline 114d6ca233ae105f66a9e7cfce0432c5 https://www.encodeproject.org/files/ENCFF549FFR/@@download/ENCFF549FFR.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF892PZK bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF807MUK 515481333 ENCODE Processing Pipeline 9788117fc415cf1e9e720205efce13c2 https://www.encodeproject.org/files/ENCFF892PZK/@@download/ENCFF892PZK.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF346XFA bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 637095392 ENCODE Processing Pipeline 1dba3fc1be83714a78d31b6cb92e0f20 https://www.encodeproject.org/files/ENCFF346XFA/@@download/ENCFF346XFA.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF054ANM bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 711361632 ENCODE Processing Pipeline 348862782d39dde39cdb350e62a4d6b4 https://www.encodeproject.org/files/ENCFF054ANM/@@download/ENCFF054ANM.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF043OML bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 662282019 ENCODE Processing Pipeline 79b9b7a5fb717595658d457674ccb4bd https://www.encodeproject.org/files/ENCFF043OML/@@download/ENCFF043OML.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF854VYC bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 323372919 ENCODE Processing Pipeline a975d52eb492007c2e352becc30b24b4 https://www.encodeproject.org/files/ENCFF854VYC/@@download/ENCFF854VYC.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF700VHX bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 346653276 ENCODE Processing Pipeline f81b651c33dc8a72368e3a1b56ffa285 https://www.encodeproject.org/files/ENCFF700VHX/@@download/ENCFF700VHX.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF027PQW bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 572068614 ENCODE Processing Pipeline 1d46765d5cc050d2653a972a3e4cd0f8 https://www.encodeproject.org/files/ENCFF027PQW/@@download/ENCFF027PQW.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF758EWS bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 4232323 ENCODE Processing Pipeline 5d46accfa744a67675230dfae78da98d https://www.encodeproject.org/files/ENCFF758EWS/@@download/ENCFF758EWS.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF569CKR bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF260LSE 10890033 ENCODE Processing Pipeline 00dfcddc639c73dc01ffc3e22fa8b890 https://www.encodeproject.org/files/ENCFF569CKR/@@download/ENCFF569CKR.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF260LSE bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 4767248 ENCODE Processing Pipeline 178b73bacfea699e8ae7bd809aad2601 https://www.encodeproject.org/files/ENCFF260LSE/@@download/ENCFF260LSE.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF300OPW bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 5394954 ENCODE Processing Pipeline 302865d2933fc134d66d8f1f850b2c20 https://www.encodeproject.org/files/ENCFF300OPW/@@download/ENCFF300OPW.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF780SWK bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF300OPW 11415507 ENCODE Processing Pipeline 9b5c43a4cfc4faac3afae14b6b758df6 https://www.encodeproject.org/files/ENCFF780SWK/@@download/ENCFF780SWK.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF519TUM bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF758EWS 10407062 ENCODE Processing Pipeline f9aa457e6aad978be7c7bbc10720be03 https://www.encodeproject.org/files/ENCFF519TUM/@@download/ENCFF519TUM.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF854AIH bed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260LSE, ENCFF300OPW, ENCFF419RSJ, ENCFF758EWS 78145 ENCODE Processing Pipeline f4af8f1be6738544efb126972f42fcbf https://www.encodeproject.org/files/ENCFF854AIH/@@download/ENCFF854AIH.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF313CII bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260LSE, ENCFF300OPW, ENCFF419RSJ, ENCFF758EWS 120679 ENCODE Processing Pipeline ca4db15a84a95381cc0cb84611326272 https://www.encodeproject.org/files/ENCFF313CII/@@download/ENCFF313CII.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF382TDG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313CII 258099 ENCODE Processing Pipeline 74064b21f789cfec8d2f539fd8212010 https://www.encodeproject.org/files/ENCFF382TDG/@@download/ENCFF382TDG.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF347ZDK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF854AIH 198073 ENCODE Processing Pipeline 13ae190567f8ca008fd8a463bdbb5113 https://www.encodeproject.org/files/ENCFF347ZDK/@@download/ENCFF347ZDK.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF196PCN bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 584738206 ENCODE Processing Pipeline 35a1273a5ac4b91906edeb2e2757c786 https://www.encodeproject.org/files/ENCFF196PCN/@@download/ENCFF196PCN.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF034OUE bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 673955842 ENCODE Processing Pipeline ba6d01a3ea8553e98276c9e8fd202c0a https://www.encodeproject.org/files/ENCFF034OUE/@@download/ENCFF034OUE.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF690WBQ bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 322827359 ENCODE Processing Pipeline b9bbe29b7171d090076dcf73438d8f5c https://www.encodeproject.org/files/ENCFF690WBQ/@@download/ENCFF690WBQ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF446OLU bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 695995074 ENCODE Processing Pipeline dc20f794d579e2e572ffb7852404d9e5 https://www.encodeproject.org/files/ENCFF446OLU/@@download/ENCFF446OLU.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF141AMS bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 340513214 ENCODE Processing Pipeline e720d37332d97509ab1950611151cd6a https://www.encodeproject.org/files/ENCFF141AMS/@@download/ENCFF141AMS.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF577BYX bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF974PTU 10876785 ENCODE Processing Pipeline 7b63579379c76c99d81fe25817f4dff6 https://www.encodeproject.org/files/ENCFF577BYX/@@download/ENCFF577BYX.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF320YSB bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 572423563 ENCODE Processing Pipeline b90c10ab45d8e019e97d94257f8bbd0d https://www.encodeproject.org/files/ENCFF320YSB/@@download/ENCFF320YSB.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF974PTU bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 4725395 ENCODE Processing Pipeline 1e04b973d8c86d59b1cbb44967b2f31a https://www.encodeproject.org/files/ENCFF974PTU/@@download/ENCFF974PTU.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF970MSE bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF793WOV 10611545 ENCODE Processing Pipeline cba03904bd44990e843da8dd7a50833a https://www.encodeproject.org/files/ENCFF970MSE/@@download/ENCFF970MSE.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF841AZX bed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF294FPR, ENCFF793WOV, ENCFF974PTU 65843 ENCODE Processing Pipeline e553a7ff02a1df831bf9577e2e2188d4 https://www.encodeproject.org/files/ENCFF841AZX/@@download/ENCFF841AZX.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF106SRL bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF294FPR 11359849 ENCODE Processing Pipeline 31713241cc525477ef9a957ccdcb792a https://www.encodeproject.org/files/ENCFF106SRL/@@download/ENCFF106SRL.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF294FPR bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 5337479 ENCODE Processing Pipeline 77dd166d27078568d6838f12adc8de99 https://www.encodeproject.org/files/ENCFF294FPR/@@download/ENCFF294FPR.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF793WOV bed narrowPeak peaks and background as input for IDR ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 4359463 ENCODE Processing Pipeline 59cf874f4e38d5ca45ad163d6c632bda https://www.encodeproject.org/files/ENCFF793WOV/@@download/ENCFF793WOV.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF116OSK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF841AZX 143849 ENCODE Processing Pipeline 9690b1c8db0f07a8f07752d83f85e3bc https://www.encodeproject.org/files/ENCFF116OSK/@@download/ENCFF116OSK.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF677KJB bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF294FPR, ENCFF793WOV, ENCFF974PTU 109221 ENCODE Processing Pipeline 0c909169189fe56ee39c28dcf7ff48fa https://www.encodeproject.org/files/ENCFF677KJB/@@download/ENCFF677KJB.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF874ATN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF677KJB 242901 ENCODE Processing Pipeline 1f22dfa21e4359d618112610231c9d5e https://www.encodeproject.org/files/ENCFF874ATN/@@download/ENCFF874ATN.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000WCN bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WDI 1060629790 Michael Snyder, Stanford 9b9a447f326a130e810d045599378b34 https://www.encodeproject.org/files/ENCFF000WCN/@@download/ENCFF000WCN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCP bigBed narrowPeak peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFE 1197190 Michael Snyder, Stanford 52c9f4a3f18f4a403a0737b3f0128bc4 https://www.encodeproject.org/files/ENCFF000WCP/@@download/ENCFF000WCP.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCQ bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WDJ 960017536 Michael Snyder, Stanford 0f4a80b2b374596e519e645c2fe25919 https://www.encodeproject.org/files/ENCFF000WCQ/@@download/ENCFF000WCQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCT bigWig signal ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 454590987 Michael Snyder, Stanford 3b8889bbd0fd94835c11000f4dfd4afb https://www.encodeproject.org/files/ENCFF000WCT/@@download/ENCFF000WCT.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WDI fastq reads ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 756807988 Michael Snyder, Stanford 85ac7a61f57a1baeba0f7b98153ec7a4 https://www.encodeproject.org/files/ENCFF000WDI/@@download/ENCFF000WDI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF000WDJ fastq reads ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 701196537 Michael Snyder, Stanford 5b537d7b582f9328fee601c299379aa8 https://www.encodeproject.org/files/ENCFF000WDJ/@@download/ENCFF000WDJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF001VFE bed narrowPeak peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 509096 Michael Snyder, Stanford 3e6e22f62ebd4d945598f66563aa3f77 https://www.encodeproject.org/files/ENCFF001VFE/@@download/ENCFF001VFE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CPK bed narrowPeak optimal idr thresholded peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 757929 ENCODE Consortium Analysis Working Group 90be6eca516f3df86ba962066a7b0f55 https://www.encodeproject.org/files/ENCFF002CPK/@@download/ENCFF002CPK.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF395FCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPK 1566591 ENCODE Consortium 6ea0eddf128d44cb2b9763a1f47c5a11 https://www.encodeproject.org/files/ENCFF395FCS/@@download/ENCFF395FCS.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000NTW bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NUK 989932051 Richard Myers, HAIB 5b94f937bdcad78638c91cfb72dda6f0 https://www.encodeproject.org/files/ENCFF000NTW/@@download/ENCFF000NTW.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTX bigBed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TWP 403648 Richard Myers, HAIB dae039b41f784c7270184257add0f5e5 https://www.encodeproject.org/files/ENCFF000NTX/@@download/ENCFF000NTX.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTY bigBed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TWQ 271725 Richard Myers, HAIB 6338ddcb0b9acd85e09a69ba4bf3b42c https://www.encodeproject.org/files/ENCFF000NTY/@@download/ENCFF000NTY.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTZ bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NUL 1581843009 Richard Myers, HAIB 5bb63ee013eaaee5e1aaecc483f1f629 https://www.encodeproject.org/files/ENCFF000NTZ/@@download/ENCFF000NTZ.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NUA bigWig raw signal ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 95839546 Richard Myers, HAIB 441c30549ae8fde8e294b61d2dce64f6 https://www.encodeproject.org/files/ENCFF000NUA/@@download/ENCFF000NUA.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NUC bigWig raw signal ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 203102594 Richard Myers, HAIB 83f12e3b4c8a314f4067bbee41b9164a https://www.encodeproject.org/files/ENCFF000NUC/@@download/ENCFF000NUC.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NUK fastq reads ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1079562478 Richard Myers, HAIB e3b0a6e84c9e0ccf6e52314bc852859d https://www.encodeproject.org/files/ENCFF000NUK/@@download/ENCFF000NUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released inconsistent platforms biological replicates with identical biosample ENCFF000NUL fastq reads ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1683603412 Richard Myers, HAIB 3aadd26af6ce9319622a511e46436db0 https://www.encodeproject.org/files/ENCFF000NUL/@@download/ENCFF000NUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released inconsistent platforms biological replicates with identical biosample ENCFF001TWP bed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 225840 Richard Myers, HAIB f4f5ac658b449f92150067a7a7729d07 https://www.encodeproject.org/files/ENCFF001TWP/@@download/ENCFF001TWP.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TWQ bed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 117465 Richard Myers, HAIB be4b7a93fa9c17199e19dcfa2c454d75 https://www.encodeproject.org/files/ENCFF001TWQ/@@download/ENCFF001TWQ.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF133HXA fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF791JGC 2660160611 Michael Snyder, Stanford 437755a0857e24b69721016c1e109224 SRA:SRR6212610 https://www.encodeproject.org/files/ENCFF133HXA/@@download/ENCFF133HXA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF791JGC fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF133HXA 3101535133 Michael Snyder, Stanford 36fbccffc46d7c8d5e269e6e99699b2a SRA:SRR6212610 https://www.encodeproject.org/files/ENCFF791JGC/@@download/ENCFF791JGC.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF899BUS fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF659EDD 3007520628 Michael Snyder, Stanford f9dc74f947c66eb72800ec5428375f5b SRA:SRR6212609 https://www.encodeproject.org/files/ENCFF899BUS/@@download/ENCFF899BUS.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF659EDD fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF899BUS 2564853133 Michael Snyder, Stanford 18c1072811b5d0fefa68f88f2a61ce38 SRA:SRR6212609 https://www.encodeproject.org/files/ENCFF659EDD/@@download/ENCFF659EDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF502XOF bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF791JGC, ENCFF807MUK 4057304317 ENCODE Processing Pipeline 2cc4ad6afeef1c1d75631de4dcc00546 https://www.encodeproject.org/files/ENCFF502XOF/@@download/ENCFF502XOF.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF842CRE bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF643CGH, ENCFF791JGC 5398587674 ENCODE Processing Pipeline 2553e4f50a6f2d78e3131f09f5b43ee7 https://www.encodeproject.org/files/ENCFF842CRE/@@download/ENCFF842CRE.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF699QHD bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF791JGC, ENCFF807MUK 5392694667 ENCODE Processing Pipeline fb97e8effce29f8c0ff6b7c091b1ec4a https://www.encodeproject.org/files/ENCFF699QHD/@@download/ENCFF699QHD.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF241LQC bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF659EDD, ENCFF807MUK, ENCFF899BUS 5230998395 ENCODE Processing Pipeline 935c5e747af2f0ad2c9b269c1e0df11e https://www.encodeproject.org/files/ENCFF241LQC/@@download/ENCFF241LQC.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF431JBK bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF659EDD, ENCFF807MUK, ENCFF899BUS 4121832886 ENCODE Processing Pipeline 74444369aa7eed78689f28a7df8281be https://www.encodeproject.org/files/ENCFF431JBK/@@download/ENCFF431JBK.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF826HNS bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF643CGH, ENCFF791JGC 4061840332 ENCODE Processing Pipeline 67056b8ad7e2e48ec688a982755b4281 https://www.encodeproject.org/files/ENCFF826HNS/@@download/ENCFF826HNS.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF678GYV bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF659EDD, ENCFF899BUS 4126666270 ENCODE Processing Pipeline 56cf246748bcaaacf66bf6d254410f7e https://www.encodeproject.org/files/ENCFF678GYV/@@download/ENCFF678GYV.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF473YEO bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF659EDD, ENCFF899BUS 5236965079 ENCODE Processing Pipeline 743b1ba87978cb33f77e8373cfc2f406 https://www.encodeproject.org/files/ENCFF473YEO/@@download/ENCFF473YEO.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF667PHC bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF882PND 11590204 ENCODE Processing Pipeline c294d8f70ddde5acaebc24e251cffc68 https://www.encodeproject.org/files/ENCFF667PHC/@@download/ENCFF667PHC.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF821QLI bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF593RSQ 13611024 ENCODE Processing Pipeline dbf0180f8a222b062758437e7f943e08 https://www.encodeproject.org/files/ENCFF821QLI/@@download/ENCFF821QLI.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF761CTK bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 1091843319 ENCODE Processing Pipeline bfb00757987d3b1ab451d39eef1e8b11 https://www.encodeproject.org/files/ENCFF761CTK/@@download/ENCFF761CTK.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF264MCX bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 1089021706 ENCODE Processing Pipeline 3e534ea58e61d88ddf134f36481e7c62 https://www.encodeproject.org/files/ENCFF264MCX/@@download/ENCFF264MCX.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF887VKI bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 1997134249 ENCODE Processing Pipeline 52ff8b0a23ff89441efa119a8569c90e https://www.encodeproject.org/files/ENCFF887VKI/@@download/ENCFF887VKI.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF705NSQ bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 1306577645 ENCODE Processing Pipeline 868cb291765bf99e45586aee4be9b217 https://www.encodeproject.org/files/ENCFF705NSQ/@@download/ENCFF705NSQ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF133LHQ bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 2344054144 ENCODE Processing Pipeline b0d0165fce354f7c229478e5c1ec6085 https://www.encodeproject.org/files/ENCFF133LHQ/@@download/ENCFF133LHQ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF882PND bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 6275090 ENCODE Processing Pipeline c675cdb91db82617fa4ea75af504c153 https://www.encodeproject.org/files/ENCFF882PND/@@download/ENCFF882PND.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF110BUK bigBed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF657GJK 444381 ENCODE Processing Pipeline 51a1c9642bf885a6989420d3a0d8cfbd https://www.encodeproject.org/files/ENCFF110BUK/@@download/ENCFF110BUK.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF620IIG bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 6394307 ENCODE Processing Pipeline df3e4eae481b595ca889f7efc6686098 https://www.encodeproject.org/files/ENCFF620IIG/@@download/ENCFF620IIG.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF355MUX bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 6264272 ENCODE Processing Pipeline 55ad0951fe7b0394004c28375132150f https://www.encodeproject.org/files/ENCFF355MUX/@@download/ENCFF355MUX.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF989JWG bed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF355MUX, ENCFF364CMF, ENCFF419RSJ, ENCFF620IIG 211975 ENCODE Processing Pipeline 1f43bb0e865a30a0525d8ac2ee91ddbc https://www.encodeproject.org/files/ENCFF989JWG/@@download/ENCFF989JWG.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF597HMI bigBed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF313HBL 620753 ENCODE Processing Pipeline 52d5587abca7d2e5b82feb048b902c76 https://www.encodeproject.org/files/ENCFF597HMI/@@download/ENCFF597HMI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF682TBO bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 1383608805 ENCODE Processing Pipeline 8210c95b93136a7f1a91a33c680b9cf8 https://www.encodeproject.org/files/ENCFF682TBO/@@download/ENCFF682TBO.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF593RSQ bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 7234019 ENCODE Processing Pipeline d9969cc61f20cc1afa17b8c75c38beb4 https://www.encodeproject.org/files/ENCFF593RSQ/@@download/ENCFF593RSQ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF678VFS bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF956UUX 11490178 ENCODE Processing Pipeline a72902e4fc543a22a46b88954012c6d8 https://www.encodeproject.org/files/ENCFF678VFS/@@download/ENCFF678VFS.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF657GJK bed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF593RSQ, ENCFF882PND, ENCFF956UUX 211460 ENCODE Processing Pipeline f636463f5b1e5b712a6060fdc5ea3b36 https://www.encodeproject.org/files/ENCFF657GJK/@@download/ENCFF657GJK.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF129VYJ bigBed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF103OOV 619774 ENCODE Processing Pipeline 40464624f308975bfbbb09e0a4556e07 https://www.encodeproject.org/files/ENCFF129VYJ/@@download/ENCFF129VYJ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF122EGN bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 1368268377 ENCODE Processing Pipeline 5087f0d3f44357ddab1ab73768f27d84 https://www.encodeproject.org/files/ENCFF122EGN/@@download/ENCFF122EGN.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF364CMF bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 7244568 ENCODE Processing Pipeline 55b79d9a5eeca37cb681693fb56a29f9 https://www.encodeproject.org/files/ENCFF364CMF/@@download/ENCFF364CMF.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF363FPA bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF355MUX 11631162 ENCODE Processing Pipeline 05c59dad8d097e7694da51df28a30c9a https://www.encodeproject.org/files/ENCFF363FPA/@@download/ENCFF363FPA.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF749QEO bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 1099976975 ENCODE Processing Pipeline ea68108a1ae4827aa1c4decca75ab4d2 https://www.encodeproject.org/files/ENCFF749QEO/@@download/ENCFF749QEO.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF527FVZ bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 2065201840 ENCODE Processing Pipeline 49216c12eacb83e69720ac83cbc4927c https://www.encodeproject.org/files/ENCFF527FVZ/@@download/ENCFF527FVZ.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF956UUX bed narrowPeak peaks and background as input for IDR ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 6387050 ENCODE Processing Pipeline f841c981f589d266ef57754545a8a6f2 https://www.encodeproject.org/files/ENCFF956UUX/@@download/ENCFF956UUX.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF479XSH bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 1382827054 ENCODE Processing Pipeline 85dbd99d91b3c2685896f4b884522410 https://www.encodeproject.org/files/ENCFF479XSH/@@download/ENCFF479XSH.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF103OOV bed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF593RSQ, ENCFF882PND, ENCFF956UUX 335127 ENCODE Processing Pipeline dc50267f97e94c42ba040408571a95a8 https://www.encodeproject.org/files/ENCFF103OOV/@@download/ENCFF103OOV.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF629RRF bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 2345786106 ENCODE Processing Pipeline c8d8f8b7baf3eb5e0998a045d36598da https://www.encodeproject.org/files/ENCFF629RRF/@@download/ENCFF629RRF.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF058UMI bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF364CMF 13631841 ENCODE Processing Pipeline 3e56a14957e4ed87c3df0d9308695957 https://www.encodeproject.org/files/ENCFF058UMI/@@download/ENCFF058UMI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF364EAT bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 1106494563 ENCODE Processing Pipeline c52be9577ddfaedeaf5b59a46a97c52b https://www.encodeproject.org/files/ENCFF364EAT/@@download/ENCFF364EAT.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF085HAZ bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF620IIG 11507027 ENCODE Processing Pipeline c6c562ecd9ed551c055037d96e45a239 https://www.encodeproject.org/files/ENCFF085HAZ/@@download/ENCFF085HAZ.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF623VVI bigBed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF989JWG 447237 ENCODE Processing Pipeline 0c9ef410b8518fa4e261e55ec6b3361d https://www.encodeproject.org/files/ENCFF623VVI/@@download/ENCFF623VVI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF313HBL bed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF355MUX, ENCFF364CMF, ENCFF419RSJ, ENCFF620IIG 334479 ENCODE Processing Pipeline cfcba39453fca558911b6f1d9f449785 https://www.encodeproject.org/files/ENCFF313HBL/@@download/ENCFF313HBL.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF416SAW fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF058YFW 2826005831 Michael Snyder, Stanford 6284bfc9da4ca21ddd3087754e8a3162 SRA:SRR6213938 https://www.encodeproject.org/files/ENCFF416SAW/@@download/ENCFF416SAW.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF017DPB fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF659OJS 2728655362 Michael Snyder, Stanford adf99a8f9252fa12c681e60def547cfd SRA:SRR6213939 https://www.encodeproject.org/files/ENCFF017DPB/@@download/ENCFF017DPB.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF058YFW fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF416SAW 3416265385 Michael Snyder, Stanford ee1a23cc2d221d71622978b2f9c00e82 SRA:SRR6213938 https://www.encodeproject.org/files/ENCFF058YFW/@@download/ENCFF058YFW.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF659OJS fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF017DPB 2496394180 Michael Snyder, Stanford f22c84b46e12cc92f1dc2b59a9886df1 SRA:SRR6213939 https://www.encodeproject.org/files/ENCFF659OJS/@@download/ENCFF659OJS.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF276HHB bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF643CGH, ENCFF659OJS 5047527094 ENCODE Processing Pipeline 42175713ecca972562d959547b77ac5a https://www.encodeproject.org/files/ENCFF276HHB/@@download/ENCFF276HHB.bam GRCh38 released mild to moderate bottlenecking ENCFF815TDC bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF659OJS, ENCFF807MUK 5042429148 ENCODE Processing Pipeline cbf21404e31e024ba565cfb9b8bda1c1 https://www.encodeproject.org/files/ENCFF815TDC/@@download/ENCFF815TDC.bam hg19 released mild to moderate bottlenecking ENCFF339LDW bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF643CGH 4776278706 ENCODE Processing Pipeline b2a063ef74b94e391928a01ae25cb52f https://www.encodeproject.org/files/ENCFF339LDW/@@download/ENCFF339LDW.bam GRCh38 released mild to moderate bottlenecking ENCFF271DGV bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF807MUK 5945568459 ENCODE Processing Pipeline 1f05a93df867c9bffdca8ef8862169f5 https://www.encodeproject.org/files/ENCFF271DGV/@@download/ENCFF271DGV.bam hg19 released mild to moderate bottlenecking ENCFF828ZWQ bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF659OJS, ENCFF807MUK 4225644077 ENCODE Processing Pipeline 3bd8ffc3c3486372ec6da00d3a1f7cfd https://www.encodeproject.org/files/ENCFF828ZWQ/@@download/ENCFF828ZWQ.bam hg19 released mild to moderate bottlenecking ENCFF506OTR bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF643CGH, ENCFF659OJS 4229797780 ENCODE Processing Pipeline 84cda950a8c0484e581226e3bd4c8be9 https://www.encodeproject.org/files/ENCFF506OTR/@@download/ENCFF506OTR.bam GRCh38 released mild to moderate bottlenecking ENCFF247RDS bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF807MUK 4770694931 ENCODE Processing Pipeline 2b7a62c960809ac1b30c35b37417d62f https://www.encodeproject.org/files/ENCFF247RDS/@@download/ENCFF247RDS.bam hg19 released mild to moderate bottlenecking ENCFF568JKN bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF643CGH 5951532269 ENCODE Processing Pipeline 2e88436db30e1a474faa48bab449c281 https://www.encodeproject.org/files/ENCFF568JKN/@@download/ENCFF568JKN.bam GRCh38 released mild to moderate bottlenecking ENCFF166KIM bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 1945134409 ENCODE Processing Pipeline d57284ace28ae554c5ab90ec648d1ad0 https://www.encodeproject.org/files/ENCFF166KIM/@@download/ENCFF166KIM.bigWig hg19 released mild to moderate bottlenecking ENCFF051OMX bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF159DHF 13357844 ENCODE Processing Pipeline f1b6abe1d788e7b1a6ed268f067c72f3 https://www.encodeproject.org/files/ENCFF051OMX/@@download/ENCFF051OMX.bigBed hg19 released mild to moderate bottlenecking ENCFF826XOP bigBed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF340WUW 789518 ENCODE Processing Pipeline 2038ca15528e47c845b23778dbc8e835 https://www.encodeproject.org/files/ENCFF826XOP/@@download/ENCFF826XOP.bigBed hg19 released mild to moderate bottlenecking ENCFF943UBF bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 1328575152 ENCODE Processing Pipeline 1d76c3c540a245712974bb97b63619e3 https://www.encodeproject.org/files/ENCFF943UBF/@@download/ENCFF943UBF.bigWig hg19 released mild to moderate bottlenecking ENCFF421DPZ bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 1302733681 ENCODE Processing Pipeline f96d4dfe3057b5a563d88136bf0d55a1 https://www.encodeproject.org/files/ENCFF421DPZ/@@download/ENCFF421DPZ.bigWig hg19 released mild to moderate bottlenecking ENCFF998TIE bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 1765948288 ENCODE Processing Pipeline a37f1654649b6420f136dc55f10fbee9 https://www.encodeproject.org/files/ENCFF998TIE/@@download/ENCFF998TIE.bigWig hg19 released mild to moderate bottlenecking ENCFF478DRD bed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF159DHF, ENCFF552GWT, ENCFF647XXJ 440679 ENCODE Processing Pipeline 545da82e161a822b31f7d0093071ede2 https://www.encodeproject.org/files/ENCFF478DRD/@@download/ENCFF478DRD.bed.gz hg19 released mild to moderate bottlenecking ENCFF496ZEL bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 1292558746 ENCODE Processing Pipeline bcd0eef8e4119fab0cfe9b89d6631c33 https://www.encodeproject.org/files/ENCFF496ZEL/@@download/ENCFF496ZEL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF052STI bed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224QHU, ENCFF419RSJ, ENCFF604RNE, ENCFF869GMP 437271 ENCODE Processing Pipeline 2a242fdac83016945a0c6ac41f0622fd https://www.encodeproject.org/files/ENCFF052STI/@@download/ENCFF052STI.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF943WFE bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 2381652887 ENCODE Processing Pipeline 87fb6ac1ba3b61dede214d111489ecfc https://www.encodeproject.org/files/ENCFF943WFE/@@download/ENCFF943WFE.bigWig hg19 released mild to moderate bottlenecking ENCFF437ZLO bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 1308489560 ENCODE Processing Pipeline fca8c9d4a030e198482afa358b7a3457 https://www.encodeproject.org/files/ENCFF437ZLO/@@download/ENCFF437ZLO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF869GMP bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 7031892 ENCODE Processing Pipeline 442ab48630065be639661ad29c119581 https://www.encodeproject.org/files/ENCFF869GMP/@@download/ENCFF869GMP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF224QHU bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 6961678 ENCODE Processing Pipeline 6f4c06fd74cc06931a2e70162a370230 https://www.encodeproject.org/files/ENCFF224QHU/@@download/ENCFF224QHU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604RNE bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 7316428 ENCODE Processing Pipeline 33b8bd77463f4d7c52949d4fe8c4e0ca https://www.encodeproject.org/files/ENCFF604RNE/@@download/ENCFF604RNE.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF159DHF bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 6956643 ENCODE Processing Pipeline 386e1410c31aac2d42b56a1661363bc5 https://www.encodeproject.org/files/ENCFF159DHF/@@download/ENCFF159DHF.bed.gz hg19 released mild to moderate bottlenecking ENCFF647XXJ bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 7310249 ENCODE Processing Pipeline d0c42e133927d6fa0d169bdca3d754bb https://www.encodeproject.org/files/ENCFF647XXJ/@@download/ENCFF647XXJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF113KBU bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF552GWT 13059659 ENCODE Processing Pipeline 6ca4e2be8e850e1413f35ce50df6e334 https://www.encodeproject.org/files/ENCFF113KBU/@@download/ENCFF113KBU.bigBed hg19 released mild to moderate bottlenecking ENCFF552GWT bed narrowPeak peaks and background as input for IDR ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 7029358 ENCODE Processing Pipeline 65b8cfef03b9dc79d02f3cde64755b8c https://www.encodeproject.org/files/ENCFF552GWT/@@download/ENCFF552GWT.bed.gz hg19 released mild to moderate bottlenecking ENCFF613CVN bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF647XXJ 13070498 ENCODE Processing Pipeline 564abce1e514f1da65684e13ea9df433 https://www.encodeproject.org/files/ENCFF613CVN/@@download/ENCFF613CVN.bigBed hg19 released mild to moderate bottlenecking ENCFF021WZH bigBed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF478DRD 881170 ENCODE Processing Pipeline 475f6bce08f88322a409d854327c08c4 https://www.encodeproject.org/files/ENCFF021WZH/@@download/ENCFF021WZH.bigBed hg19 released mild to moderate bottlenecking ENCFF885UGW bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 1835397515 ENCODE Processing Pipeline 116737be10dd10330a0116fe46e44d41 https://www.encodeproject.org/files/ENCFF885UGW/@@download/ENCFF885UGW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF807USB bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF604RNE 13083447 ENCODE Processing Pipeline cc9e6464569109e1188a50396da7dd41 https://www.encodeproject.org/files/ENCFF807USB/@@download/ENCFF807USB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF697SGW bigBed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF815RKD 795528 ENCODE Processing Pipeline 28bd0491e780b24ed295d191ed145ed0 https://www.encodeproject.org/files/ENCFF697SGW/@@download/ENCFF697SGW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF640RPR bigBed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF052STI 877394 ENCODE Processing Pipeline a6ade70079107b6f463ae21a5db63622 https://www.encodeproject.org/files/ENCFF640RPR/@@download/ENCFF640RPR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF484RBP bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 1835035868 ENCODE Processing Pipeline 022348452d94e1fa61dd7a5301d53692 https://www.encodeproject.org/files/ENCFF484RBP/@@download/ENCFF484RBP.bigWig hg19 released mild to moderate bottlenecking ENCFF340WUW bed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF159DHF, ENCFF552GWT, ENCFF647XXJ 385876 ENCODE Processing Pipeline 37efc4cd7655ee72af44aac3ce2c4428 https://www.encodeproject.org/files/ENCFF340WUW/@@download/ENCFF340WUW.bed.gz hg19 released mild to moderate bottlenecking ENCFF222EWJ bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF869GMP 13065438 ENCODE Processing Pipeline 162fefcfcfce90214c3beef171465b99 https://www.encodeproject.org/files/ENCFF222EWJ/@@download/ENCFF222EWJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF108TSF bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 1790387450 ENCODE Processing Pipeline 5af02098ec44c7b88ad40f99101a7754 https://www.encodeproject.org/files/ENCFF108TSF/@@download/ENCFF108TSF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF933PRL bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 2244418716 ENCODE Processing Pipeline 1009878b861fd9840ca75d9ee0693c7e https://www.encodeproject.org/files/ENCFF933PRL/@@download/ENCFF933PRL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF562RHH bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 2382698317 ENCODE Processing Pipeline 08670e628a314bdacaa4f1cb81fbc7c5 https://www.encodeproject.org/files/ENCFF562RHH/@@download/ENCFF562RHH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF477NOJ bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF224QHU 13369534 ENCODE Processing Pipeline 283f6673d5588e796fd7818c22fcdd5b https://www.encodeproject.org/files/ENCFF477NOJ/@@download/ENCFF477NOJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF815RKD bed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224QHU, ENCFF419RSJ, ENCFF604RNE, ENCFF869GMP 387748 ENCODE Processing Pipeline 440623570426429f5cf803479aaf926c https://www.encodeproject.org/files/ENCFF815RKD/@@download/ENCFF815RKD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF525YYN fastq reads ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1170896664 Bradley Bernstein, Broad 1435c80967a3f66a4123dfde1077e27a SRA:SRR5832869 https://www.encodeproject.org/files/ENCFF525YYN/@@download/ENCFF525YYN.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released low read depth ENCFF500QDP fastq reads ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1206466100 Bradley Bernstein, Broad f9830d59db8ced6fe08d74a6583ba637 SRA:SRR5832870 https://www.encodeproject.org/files/ENCFF500QDP/@@download/ENCFF500QDP.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released low read depth ENCFF343BMV bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF807MUK 1454315378 ENCODE Processing Pipeline 49cce5abb39d0f653364df42e3b58034 https://www.encodeproject.org/files/ENCFF343BMV/@@download/ENCFF343BMV.bam hg19 released low read depth ENCFF045BQI bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF643CGH 1460539127 ENCODE Processing Pipeline 5ba56bd3960d8032c360122495caa0e2 https://www.encodeproject.org/files/ENCFF045BQI/@@download/ENCFF045BQI.bam GRCh38 released low read depth ENCFF613DSA bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF807MUK 1162994412 ENCODE Processing Pipeline 22aea8c2a744ccdf99a0173ee4c10e43 https://www.encodeproject.org/files/ENCFF613DSA/@@download/ENCFF613DSA.bam hg19 released low read depth ENCFF226SIV bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF643CGH 1438001316 ENCODE Processing Pipeline b6bf3d3f9ead48f3b2ff7f56928fbafa https://www.encodeproject.org/files/ENCFF226SIV/@@download/ENCFF226SIV.bam GRCh38 released low read depth ENCFF279FXW bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF807MUK 1430859609 ENCODE Processing Pipeline 1c5eed3b5440b8cb967516e08ec4903d https://www.encodeproject.org/files/ENCFF279FXW/@@download/ENCFF279FXW.bam hg19 released low read depth ENCFF891QYX bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF643CGH 1111303265 ENCODE Processing Pipeline de8403dcb4e07d5e59e0ed83dffad87b https://www.encodeproject.org/files/ENCFF891QYX/@@download/ENCFF891QYX.bam GRCh38 released low read depth ENCFF814XON bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF643CGH 1166104741 ENCODE Processing Pipeline d52737598171775eb1be1c42478a40b1 https://www.encodeproject.org/files/ENCFF814XON/@@download/ENCFF814XON.bam GRCh38 released low read depth ENCFF177HNF bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF807MUK 1107658291 ENCODE Processing Pipeline 4605f4ec232fcd8ef5434af6d7d491b9 https://www.encodeproject.org/files/ENCFF177HNF/@@download/ENCFF177HNF.bam hg19 released low read depth ENCFF726SNR bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1012307624 ENCODE Processing Pipeline b8b24fcedf88b2e1c7858e00a67fa76e https://www.encodeproject.org/files/ENCFF726SNR/@@download/ENCFF726SNR.bigWig hg19 released low read depth ENCFF685NUU bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 6315866 ENCODE Processing Pipeline e2c7d4c65e357d207437d90dd53fb2c5 https://www.encodeproject.org/files/ENCFF685NUU/@@download/ENCFF685NUU.bed.gz hg19 released low read depth ENCFF069WNS bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 6147376 ENCODE Processing Pipeline b3f11d9c60d051d52eb429f9cfe1601e https://www.encodeproject.org/files/ENCFF069WNS/@@download/ENCFF069WNS.bed.gz hg19 released low read depth ENCFF885FOW bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF685NUU 13308947 ENCODE Processing Pipeline 53eb18e68b18067205e0ce095d281176 https://www.encodeproject.org/files/ENCFF885FOW/@@download/ENCFF885FOW.bigBed hg19 released low read depth ENCFF216FFS bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF069WNS 13412297 ENCODE Processing Pipeline a58fb77ec4cb7190f4f951733988d940 https://www.encodeproject.org/files/ENCFF216FFS/@@download/ENCFF216FFS.bigBed hg19 released low read depth ENCFF607ZXG bed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF069WNS, ENCFF685NUU, ENCFF981HQF 8382 ENCODE Processing Pipeline a88337e976aeb447418fa97d35b40024 https://www.encodeproject.org/files/ENCFF607ZXG/@@download/ENCFF607ZXG.bed.gz hg19 released low read depth ENCFF417OFX bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ 13372889 ENCODE Processing Pipeline 4a7d455bb96e6f1a1af827127b5fe74c https://www.encodeproject.org/files/ENCFF417OFX/@@download/ENCFF417OFX.bigBed GRCh38 released low read depth ENCFF606YYB bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 6172805 ENCODE Processing Pipeline 22ae1ae22ae8219e0a192585d48e58ad https://www.encodeproject.org/files/ENCFF606YYB/@@download/ENCFF606YYB.bed.gz GRCh38 released low read depth ENCFF088EDZ bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF981HQF 13216659 ENCODE Processing Pipeline 7e34d99e3c4734d6e244b0755fce3dec https://www.encodeproject.org/files/ENCFF088EDZ/@@download/ENCFF088EDZ.bigBed hg19 released low read depth ENCFF124KYF bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 957998615 ENCODE Processing Pipeline d0f9f84ac5b8c746c16da143d0c5b4b0 https://www.encodeproject.org/files/ENCFF124KYF/@@download/ENCFF124KYF.bigWig hg19 released low read depth ENCFF453WUG bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 847524936 ENCODE Processing Pipeline dbb3a494a46b2683a38333d1d9ba8194 https://www.encodeproject.org/files/ENCFF453WUG/@@download/ENCFF453WUG.bigWig hg19 released low read depth ENCFF220BSP bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 882015840 ENCODE Processing Pipeline dba8df950f6d4ad772a44f09fc88d09d https://www.encodeproject.org/files/ENCFF220BSP/@@download/ENCFF220BSP.bigWig GRCh38 released low read depth ENCFF981HQF bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 6929774 ENCODE Processing Pipeline 4927ba7e397bdabff25014eb91551508 https://www.encodeproject.org/files/ENCFF981HQF/@@download/ENCFF981HQF.bed.gz hg19 released low read depth ENCFF052CIJ bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 6780627 ENCODE Processing Pipeline 4df82676d5b65115d82e0cc18a27602d https://www.encodeproject.org/files/ENCFF052CIJ/@@download/ENCFF052CIJ.bed.gz GRCh38 released low read depth ENCFF141LEI bed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF069WNS, ENCFF685NUU, ENCFF981HQF 8524 ENCODE Processing Pipeline 58281cd2d3fdcbce6474dcc7abc61e32 https://www.encodeproject.org/files/ENCFF141LEI/@@download/ENCFF141LEI.bed.gz hg19 released low read depth ENCFF930BKB bigBed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF552QOA 108474 ENCODE Processing Pipeline ff7255d33a5156eaed437c694886fd38 https://www.encodeproject.org/files/ENCFF930BKB/@@download/ENCFF930BKB.bigBed GRCh38 released low read depth ENCFF094MGE bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 1159558624 ENCODE Processing Pipeline 9f4939130347faf09d1856682ded3ecb https://www.encodeproject.org/files/ENCFF094MGE/@@download/ENCFF094MGE.bigWig GRCh38 released low read depth ENCFF290KWW bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 932029198 ENCODE Processing Pipeline 88b61caff12fbccf71c4d3ea1f4d5da7 https://www.encodeproject.org/files/ENCFF290KWW/@@download/ENCFF290KWW.bigWig GRCh38 released low read depth ENCFF643WKY bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 978954812 ENCODE Processing Pipeline 740d13b6b790d36ad9b7dfcce1073f6e https://www.encodeproject.org/files/ENCFF643WKY/@@download/ENCFF643WKY.bigWig GRCh38 released low read depth ENCFF741ZGT bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 1300031515 ENCODE Processing Pipeline 6cafabf9307043089fa99358c54de318 https://www.encodeproject.org/files/ENCFF741ZGT/@@download/ENCFF741ZGT.bigWig GRCh38 released low read depth ENCFF732LWT bigBed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF607ZXG 101627 ENCODE Processing Pipeline b57a11b503f9e5b730c8184097a24d83 https://www.encodeproject.org/files/ENCFF732LWT/@@download/ENCFF732LWT.bigBed hg19 released low read depth ENCFF269CTS bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1141085169 ENCODE Processing Pipeline 098589aeb183a780153a5d91249888eb https://www.encodeproject.org/files/ENCFF269CTS/@@download/ENCFF269CTS.bigWig hg19 released low read depth ENCFF613JTE bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 909517178 ENCODE Processing Pipeline e3241218f8a320c76dd4978b0203a179 https://www.encodeproject.org/files/ENCFF613JTE/@@download/ENCFF613JTE.bigWig hg19 released low read depth ENCFF771KTX bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 870028969 ENCODE Processing Pipeline a279a2457f2f83de1ba116fcc4397336 https://www.encodeproject.org/files/ENCFF771KTX/@@download/ENCFF771KTX.bigWig GRCh38 released low read depth ENCFF560MPE bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1287905756 ENCODE Processing Pipeline 478abd43c577b6ce40786a07fe9ce972 https://www.encodeproject.org/files/ENCFF560MPE/@@download/ENCFF560MPE.bigWig hg19 released low read depth ENCFF815EXW bed narrowPeak peaks and background as input for IDR ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 5956561 ENCODE Processing Pipeline 6ef45f0cdca1d314d213a89065752f4d https://www.encodeproject.org/files/ENCFF815EXW/@@download/ENCFF815EXW.bed.gz GRCh38 released low read depth ENCFF657PLX bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF606YYB 13410176 ENCODE Processing Pipeline 2973e625de3c051eb4fb133ce2d15228 https://www.encodeproject.org/files/ENCFF657PLX/@@download/ENCFF657PLX.bigBed GRCh38 released low read depth ENCFF437FDH bigBed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF141LEI 101585 ENCODE Processing Pipeline 1c21d75251c608fe5990d69cabb16557 https://www.encodeproject.org/files/ENCFF437FDH/@@download/ENCFF437FDH.bigBed hg19 released low read depth ENCFF994CDG bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF815EXW 13510923 ENCODE Processing Pipeline d51d0a756588c35fbdf03796501a09c9 https://www.encodeproject.org/files/ENCFF994CDG/@@download/ENCFF994CDG.bigBed GRCh38 released low read depth ENCFF507WQJ bed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ, ENCFF419RSJ, ENCFF606YYB, ENCFF815EXW 8328 ENCODE Processing Pipeline b236d118244fdf5629d1108fc6ddd034 https://www.encodeproject.org/files/ENCFF507WQJ/@@download/ENCFF507WQJ.bed.gz GRCh38 released low read depth ENCFF552QOA bed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ, ENCFF419RSJ, ENCFF606YYB, ENCFF815EXW 9613 ENCODE Processing Pipeline 308262f6f3c2a771c64553ce3028969e https://www.encodeproject.org/files/ENCFF552QOA/@@download/ENCFF552QOA.bed.gz GRCh38 released low read depth ENCFF452WYE bigBed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF507WQJ 105141 ENCODE Processing Pipeline 9d013b3a95d3c7d284949eae5be59861 https://www.encodeproject.org/files/ENCFF452WYE/@@download/ENCFF452WYE.bigBed GRCh38 released low read depth ENCFF962BKF bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF807MUK 8055490215 ENCODE Processing Pipeline e5f4d7eb4949351fd3fac8d62d64f4e3 https://www.encodeproject.org/files/ENCFF962BKF/@@download/ENCFF962BKF.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF210STE bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF807MUK 7893452627 ENCODE Processing Pipeline add403092f46221cb4e3e9bf20b335ee https://www.encodeproject.org/files/ENCFF210STE/@@download/ENCFF210STE.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF002DOM fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHO 3639528371 Michael Snyder, Stanford 5275f9997915a36a672a90a21c47d459 SRA:SRR5111144 https://www.encodeproject.org/files/ENCFF002DOM/@@download/ENCFF002DOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF002DOQ fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHP 3794926700 Michael Snyder, Stanford 045ed16a9a8b11d09261cc1a31d0cce4 SRA:SRR5111145 https://www.encodeproject.org/files/ENCFF002DOQ/@@download/ENCFF002DOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF002EHO fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOM 3672693055 Michael Snyder, Stanford 30b356df62555bfc0e66187158bbdc59 SRA:SRR5111144 https://www.encodeproject.org/files/ENCFF002EHO/@@download/ENCFF002EHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF002EHP fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DOQ 3778113984 Michael Snyder, Stanford 33c0a0a8f310b5a44f32d56b0f94841b SRA:SRR5111145 https://www.encodeproject.org/files/ENCFF002EHP/@@download/ENCFF002EHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF621AIX bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF807MUK 6457320830 ENCODE Processing Pipeline eaf974bbfe570893c9c49213fde0e7b8 https://www.encodeproject.org/files/ENCFF621AIX/@@download/ENCFF621AIX.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF571DSD bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF807MUK 6575817140 ENCODE Processing Pipeline f42789153bc585b8f23b56b92d97a776 https://www.encodeproject.org/files/ENCFF571DSD/@@download/ENCFF571DSD.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF781UCF bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 1418969832 ENCODE Processing Pipeline be34ba8fe326b754a8998cfa4817f867 https://www.encodeproject.org/files/ENCFF781UCF/@@download/ENCFF781UCF.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF477YRC bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 2496162097 ENCODE Processing Pipeline 090d6694f9c5797b7c4176fb0b586e0d https://www.encodeproject.org/files/ENCFF477YRC/@@download/ENCFF477YRC.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF400HCL bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 1531784333 ENCODE Processing Pipeline def49cda0d6ed9ca58a80e3e040173d0 https://www.encodeproject.org/files/ENCFF400HCL/@@download/ENCFF400HCL.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF744DJH bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 7270364 ENCODE Processing Pipeline 9ec6ed9eff390e53570363f5a3c9d5d1 https://www.encodeproject.org/files/ENCFF744DJH/@@download/ENCFF744DJH.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF763CTD bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 1786079926 ENCODE Processing Pipeline 082b13f8f9698334ff4867d0653fcaaa https://www.encodeproject.org/files/ENCFF763CTD/@@download/ENCFF763CTD.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF577TNC bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF790EAG 13328584 ENCODE Processing Pipeline 0a39827b2ab08f383548413db071b860 https://www.encodeproject.org/files/ENCFF577TNC/@@download/ENCFF577TNC.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF631FWH bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF744DJH 13313842 ENCODE Processing Pipeline fa1bf50dac7be4eb26e670fcf853a6f6 https://www.encodeproject.org/files/ENCFF631FWH/@@download/ENCFF631FWH.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF958FPB bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 1939364048 ENCODE Processing Pipeline 6f07cdbed8ca05418771e389d71578e5 https://www.encodeproject.org/files/ENCFF958FPB/@@download/ENCFF958FPB.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF484ZSZ bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 2530435438 ENCODE Processing Pipeline c27fe7630d66ff42cac22e8ebc1909b3 https://www.encodeproject.org/files/ENCFF484ZSZ/@@download/ENCFF484ZSZ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF432JWQ bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 6777932 ENCODE Processing Pipeline b76707c57c3f129259925cd947b1f208 https://www.encodeproject.org/files/ENCFF432JWQ/@@download/ENCFF432JWQ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF511CIZ bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF432JWQ 13365835 ENCODE Processing Pipeline 362c313747f3d0587963d6eddb7bd6f5 https://www.encodeproject.org/files/ENCFF511CIZ/@@download/ENCFF511CIZ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF790EAG bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 7075209 ENCODE Processing Pipeline 57175cbb3e3b259b17307f4ba23ad295 https://www.encodeproject.org/files/ENCFF790EAG/@@download/ENCFF790EAG.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF856PTQ bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF643CGH 8064142487 ENCODE Processing Pipeline 061c3d8b11cd2c3819947e2f462e3775 https://www.encodeproject.org/files/ENCFF856PTQ/@@download/ENCFF856PTQ.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF530LAJ bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF643CGH 7903914701 ENCODE Processing Pipeline be586ae8bd1a572c12f65b54913b8898 https://www.encodeproject.org/files/ENCFF530LAJ/@@download/ENCFF530LAJ.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF360OZT bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF643CGH 6468833600 ENCODE Processing Pipeline f15323978e463e2513ae85d3189c56a8 https://www.encodeproject.org/files/ENCFF360OZT/@@download/ENCFF360OZT.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF856SJL bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF643CGH 6595427591 ENCODE Processing Pipeline fb8fa5971520eb8227c0c55612c5be68 https://www.encodeproject.org/files/ENCFF856SJL/@@download/ENCFF856SJL.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF614EDF bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 1395309424 ENCODE Processing Pipeline 5dfb00106025068704f1db81e71deafd https://www.encodeproject.org/files/ENCFF614EDF/@@download/ENCFF614EDF.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF156PLT bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 1937565863 ENCODE Processing Pipeline 574e616b628178e37884c9754ee59cd3 https://www.encodeproject.org/files/ENCFF156PLT/@@download/ENCFF156PLT.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF428OOG bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 1958158077 ENCODE Processing Pipeline 9688f048172f929d1bdf62f726a7a1a5 https://www.encodeproject.org/files/ENCFF428OOG/@@download/ENCFF428OOG.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF944RRZ bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 1533743250 ENCODE Processing Pipeline 4b1a70e72ec7bf783e707a94a6e0ebee https://www.encodeproject.org/files/ENCFF944RRZ/@@download/ENCFF944RRZ.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF603CPL bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 1935216775 ENCODE Processing Pipeline 302139a53e2fb322e877f6d8547feca8 https://www.encodeproject.org/files/ENCFF603CPL/@@download/ENCFF603CPL.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF676UXN bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 2530655757 ENCODE Processing Pipeline db09a43eb3ba7d4a575e7f048d214f41 https://www.encodeproject.org/files/ENCFF676UXN/@@download/ENCFF676UXN.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF644SHD bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 6632119 ENCODE Processing Pipeline bcb97f9f7d7f2c71d6653a23e668537e https://www.encodeproject.org/files/ENCFF644SHD/@@download/ENCFF644SHD.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF448FLQ bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 7006217 ENCODE Processing Pipeline cac33ef8586ebeb04d48c0bf200cb3d4 https://www.encodeproject.org/files/ENCFF448FLQ/@@download/ENCFF448FLQ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF743AQR bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF644SHD 11243141 ENCODE Processing Pipeline c00023da46e8c7ebf0dcef0cd2cf052c https://www.encodeproject.org/files/ENCFF743AQR/@@download/ENCFF743AQR.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF345SXC bed narrowPeak peaks and background as input for IDR ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 7257418 ENCODE Processing Pipeline 1b3c4307c32edbdcd05f540fe81938ce https://www.encodeproject.org/files/ENCFF345SXC/@@download/ENCFF345SXC.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF337FSM bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC 13324564 ENCODE Processing Pipeline d06da3a860265bf06978fbc49d26597a https://www.encodeproject.org/files/ENCFF337FSM/@@download/ENCFF337FSM.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF164WOB bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF448FLQ 13326141 ENCODE Processing Pipeline baf4aa572061f1870bf2ee7b2fa18f8a https://www.encodeproject.org/files/ENCFF164WOB/@@download/ENCFF164WOB.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF580TAE bed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC, ENCFF419RSJ, ENCFF448FLQ, ENCFF644SHD 198618 ENCODE Processing Pipeline fa53b5218d5fa59a707dfa4f329a5521 https://www.encodeproject.org/files/ENCFF580TAE/@@download/ENCFF580TAE.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF447PDB bigBed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF580TAE 449380 ENCODE Processing Pipeline 28e277235e01f963bdbde778bf763ee5 https://www.encodeproject.org/files/ENCFF447PDB/@@download/ENCFF447PDB.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF676BIG bed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC, ENCFF419RSJ, ENCFF448FLQ, ENCFF644SHD 309628 ENCODE Processing Pipeline aee22b6dbe0fd94f525c3b4981d7326d https://www.encodeproject.org/files/ENCFF676BIG/@@download/ENCFF676BIG.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF820GYH bigBed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF676BIG 632044 ENCODE Processing Pipeline caa73c53d5f5bc7d81d144dcd38f6ea1 https://www.encodeproject.org/files/ENCFF820GYH/@@download/ENCFF820GYH.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF273BVT bed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF432JWQ, ENCFF744DJH, ENCFF790EAG 253776 ENCODE Processing Pipeline 723ae98f692a0545c08fab0660c49ebe https://www.encodeproject.org/files/ENCFF273BVT/@@download/ENCFF273BVT.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF163DWT bed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF432JWQ, ENCFF744DJH, ENCFF790EAG 156679 ENCODE Processing Pipeline d2d1c783a92bc1da03cb8299e1838a8b https://www.encodeproject.org/files/ENCFF163DWT/@@download/ENCFF163DWT.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF667SDH bigBed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF273BVT 452183 ENCODE Processing Pipeline 7f8ac1b7640f5673e9140c6c316c9c83 https://www.encodeproject.org/files/ENCFF667SDH/@@download/ENCFF667SDH.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF471CVE bigBed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF163DWT 321707 ENCODE Processing Pipeline ccc43bbd37e6796567b46bd37f832d9f https://www.encodeproject.org/files/ENCFF471CVE/@@download/ENCFF471CVE.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF948EIJ fastq reads ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 1 76 single-ended 1927608090 Bradley Bernstein, Broad c8cf11200bb0b3b258a37ac7402365d0 https://www.encodeproject.org/files/ENCFF948EIJ/@@download/ENCFF948EIJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF799DYS bam unfiltered alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF807MUK, ENCFF948EIJ 2229821858 ENCODE Processing Pipeline 7dd0eff97e511856c33a268e61cb1f6b https://www.encodeproject.org/files/ENCFF799DYS/@@download/ENCFF799DYS.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF858ORH bam unfiltered alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF643CGH, ENCFF948EIJ 2233495708 ENCODE Processing Pipeline d0f85fb0990f50e67fdefcc076b54c00 https://www.encodeproject.org/files/ENCFF858ORH/@@download/ENCFF858ORH.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF468GSD bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF807MUK, ENCFF948EIJ 1753601314 ENCODE Processing Pipeline 4ebf07e71ed25120bb9e1d41cc7c1cc1 https://www.encodeproject.org/files/ENCFF468GSD/@@download/ENCFF468GSD.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF651ATB bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF643CGH, ENCFF948EIJ 1758762883 ENCODE Processing Pipeline cce7f36a63f001c2d385b0f4a5e518af https://www.encodeproject.org/files/ENCFF651ATB/@@download/ENCFF651ATB.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF119POK bigBed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF982ZRX 11435229 ENCODE Processing Pipeline ab972239b5852093a2f7f03d0f2d9332 https://www.encodeproject.org/files/ENCFF119POK/@@download/ENCFF119POK.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF539FGB bigWig signal p-value ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 887856226 ENCODE Processing Pipeline 99a374a6d44b3825f3c1c6dfb9654acf https://www.encodeproject.org/files/ENCFF539FGB/@@download/ENCFF539FGB.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF912GHA bigWig fold change over control ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 883700918 ENCODE Processing Pipeline 30beedb1778987fe20557424e80e1cbf https://www.encodeproject.org/files/ENCFF912GHA/@@download/ENCFF912GHA.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF676MWM bigWig signal p-value ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 850022620 ENCODE Processing Pipeline cca56ce00d19a247a9ce8a1e4338d160 https://www.encodeproject.org/files/ENCFF676MWM/@@download/ENCFF676MWM.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF093MSD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF746JPU 238212 ENCODE Processing Pipeline 6e66fe87115c63e33a56e54a4110b906 https://www.encodeproject.org/files/ENCFF093MSD/@@download/ENCFF093MSD.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF071OMY bigBed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF123UGV 11466615 ENCODE Processing Pipeline 2e9a8755e8e91cbfcba4f41aa8bf2881 https://www.encodeproject.org/files/ENCFF071OMY/@@download/ENCFF071OMY.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF982ZRX bed narrowPeak peaks and background as input for IDR ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 5550435 ENCODE Processing Pipeline 5daee905a3ddafa7c63f59aef3bca91a https://www.encodeproject.org/files/ENCFF982ZRX/@@download/ENCFF982ZRX.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF123UGV bed narrowPeak peaks and background as input for IDR ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 5464231 ENCODE Processing Pipeline f080b7691af05cd0538a033843d55183 https://www.encodeproject.org/files/ENCFF123UGV/@@download/ENCFF123UGV.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF758DPC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF547FUI 243250 ENCODE Processing Pipeline 1e9a8687420845b9f393d18b4e0d8a15 https://www.encodeproject.org/files/ENCFF758DPC/@@download/ENCFF758DPC.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF876VVJ bigWig fold change over control ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 882998892 ENCODE Processing Pipeline ff0bf9cf19e35b1e4b21d6bf34dfc139 https://www.encodeproject.org/files/ENCFF876VVJ/@@download/ENCFF876VVJ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF746JPU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF001TDO, ENCFF982ZRX 68585 ENCODE Processing Pipeline 1919632ad042fa2526b47ad77f1dc405 https://www.encodeproject.org/files/ENCFF746JPU/@@download/ENCFF746JPU.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF547FUI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF123UGV, ENCFF419RSJ 72641 ENCODE Processing Pipeline 2ad0739f5f523819a95f18d513f8877d https://www.encodeproject.org/files/ENCFF547FUI/@@download/ENCFF547FUI.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO unreplicated experiment ENCFF000WDH bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WEB 536963972 Michael Snyder, Stanford a4cbb7fd953957e502d8619ccace4ad1 https://www.encodeproject.org/files/ENCFF000WDH/@@download/ENCFF000WDH.bam hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample ENCFF000WDL bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFH 2531020 Michael Snyder, Stanford 4300a6f5f0ac45d76ce406cb8489edce https://www.encodeproject.org/files/ENCFF000WDL/@@download/ENCFF000WDL.bigBed hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample ENCFF000WDM bigWig signal ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 448221944 Michael Snyder, Stanford 3ac7a3a4684721e481d116cd5fa3f0e8 https://www.encodeproject.org/files/ENCFF000WDM/@@download/ENCFF000WDM.bigWig hg19 archived low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000WDN bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WEC 662412955 Michael Snyder, Stanford ba46b6d5d79b7f6357190155ff3b3a9d https://www.encodeproject.org/files/ENCFF000WDN/@@download/ENCFF000WDN.bam hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample ENCFF000WEB fastq reads ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 999114722 Michael Snyder, Stanford ecc197936a700fabbd9ac8d9a51672d2 https://www.encodeproject.org/files/ENCFF000WEB/@@download/ENCFF000WEB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, borderline replicate concordance biological replicates with identical biosample ENCFF000WEC fastq reads ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1480983413 Michael Snyder, Stanford 2bccef83f6d812e45f24d187d215e23a https://www.encodeproject.org/files/ENCFF000WEC/@@download/ENCFF000WEC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, borderline replicate concordance biological replicates with identical biosample ENCFF001VFH bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1191203 Michael Snyder, Stanford 3674a321ff9005ad680e3d1a4233ce54 https://www.encodeproject.org/files/ENCFF001VFH/@@download/ENCFF001VFH.bed.gz hg19 archived low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CPN bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 746137 ENCODE Consortium Analysis Working Group a2acdd468555c5743295f7d2f82fab6c https://www.encodeproject.org/files/ENCFF002CPN/@@download/ENCFF002CPN.bed.gz hg19 archived low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF798DPZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPN 1645029 ENCODE Consortium a464a0eb8ad85dc1506f527d784c0d55 https://www.encodeproject.org/files/ENCFF798DPZ/@@download/ENCFF798DPZ.bigBed hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample ENCFF170WOC bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF643CGH 1612858275 ENCODE Processing Pipeline 4d5dbb97e5c44ebbf27f080482677a23 https://www.encodeproject.org/files/ENCFF170WOC/@@download/ENCFF170WOC.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF375OQR bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF643CGH 702595643 ENCODE Processing Pipeline 2368f0e65593f136dd913b7c4132a89f https://www.encodeproject.org/files/ENCFF375OQR/@@download/ENCFF375OQR.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF253RTD bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF643CGH 992778955 ENCODE Processing Pipeline cca694de6583e95d0ac7189203f96739 https://www.encodeproject.org/files/ENCFF253RTD/@@download/ENCFF253RTD.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF759YVV bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF643CGH 1077774180 ENCODE Processing Pipeline 3d77f884d91757a7282afbcb839ad465 https://www.encodeproject.org/files/ENCFF759YVV/@@download/ENCFF759YVV.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF784URN bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF807MUK 1074248287 ENCODE Processing Pipeline e0a4eb5704b39839103f73c0bcfe5e8e https://www.encodeproject.org/files/ENCFF784URN/@@download/ENCFF784URN.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF415OZI bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF807MUK 701402384 ENCODE Processing Pipeline f6d03568e08ffe7bac80c0968e9abed9 https://www.encodeproject.org/files/ENCFF415OZI/@@download/ENCFF415OZI.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF243VQR bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF807MUK 1606112610 ENCODE Processing Pipeline fa35b16a6d262d5804b15b762c0bef93 https://www.encodeproject.org/files/ENCFF243VQR/@@download/ENCFF243VQR.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF797XWM bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF807MUK 992869792 ENCODE Processing Pipeline d625ca2d02329028eef7e73d58c9e34a https://www.encodeproject.org/files/ENCFF797XWM/@@download/ENCFF797XWM.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF599KQW bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 180603007 ENCODE Processing Pipeline 8b50d8814e667dd6f841827eb08d239a https://www.encodeproject.org/files/ENCFF599KQW/@@download/ENCFF599KQW.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF235BXX bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 606487259 ENCODE Processing Pipeline ca933deb6e01a4600f871eb9a5677acc https://www.encodeproject.org/files/ENCFF235BXX/@@download/ENCFF235BXX.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF667DQO bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF246ZRW 10180276 ENCODE Processing Pipeline fb56ec9846abeaae92f99911dcefa311 https://www.encodeproject.org/files/ENCFF667DQO/@@download/ENCFF667DQO.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF496PLN bed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF027ZKP, ENCFF246ZRW, ENCFF249QCH 346205 ENCODE Processing Pipeline 1d4b668c7e10bf1bfd1e1eb5a081a3cf https://www.encodeproject.org/files/ENCFF496PLN/@@download/ENCFF496PLN.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF737MCQ bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 72457736 ENCODE Processing Pipeline 24dcd59eeccdbcf80b20fa875fc6737f https://www.encodeproject.org/files/ENCFF737MCQ/@@download/ENCFF737MCQ.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF175HVC bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF249QCH 11162205 ENCODE Processing Pipeline a9e187f6bdf81ac5a665add35b07d3bf https://www.encodeproject.org/files/ENCFF175HVC/@@download/ENCFF175HVC.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF667FEX bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 299414368 ENCODE Processing Pipeline 0e72e2e4b74d767cf50e6767f82fefdb https://www.encodeproject.org/files/ENCFF667FEX/@@download/ENCFF667FEX.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF823SMT bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF027ZKP 10302504 ENCODE Processing Pipeline b3691d0c6cf1b86f314ea62180caf3cb https://www.encodeproject.org/files/ENCFF823SMT/@@download/ENCFF823SMT.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF246ZRW bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 4420736 ENCODE Processing Pipeline 7b5ac62f88b531789ba07c59c81d94fb https://www.encodeproject.org/files/ENCFF246ZRW/@@download/ENCFF246ZRW.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF027ZKP bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 3990972 ENCODE Processing Pipeline 9fc4e54229d238b968ec7f8905b0b566 https://www.encodeproject.org/files/ENCFF027ZKP/@@download/ENCFF027ZKP.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF249QCH bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 4996467 ENCODE Processing Pipeline 082fee7b6754e453daa45d33d18d8903 https://www.encodeproject.org/files/ENCFF249QCH/@@download/ENCFF249QCH.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF872KIR bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 323337734 ENCODE Processing Pipeline e285fa51934e7d3ddfa4b3e18c23ce5f https://www.encodeproject.org/files/ENCFF872KIR/@@download/ENCFF872KIR.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF470DIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF496PLN 649666 ENCODE Processing Pipeline c6719e72db2b9e9f0e3950754f8a34ab https://www.encodeproject.org/files/ENCFF470DIG/@@download/ENCFF470DIG.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF815ERA bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 158202007 ENCODE Processing Pipeline 24ddd07febac0ae66ba93340e4df722f https://www.encodeproject.org/files/ENCFF815ERA/@@download/ENCFF815ERA.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF686FLD bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF027ZKP, ENCFF246ZRW, ENCFF249QCH 573680 ENCODE Processing Pipeline bba9c26b2d0c073aaa60505f9cfdb10b https://www.encodeproject.org/files/ENCFF686FLD/@@download/ENCFF686FLD.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF218GKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF686FLD 975036 ENCODE Processing Pipeline f3ec709aa0b92a86987e7c10a6435a33 https://www.encodeproject.org/files/ENCFF218GKJ/@@download/ENCFF218GKJ.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF054NUV bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 301862165 ENCODE Processing Pipeline e864dbee93c721eb58fb758d1bea234a https://www.encodeproject.org/files/ENCFF054NUV/@@download/ENCFF054NUV.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF712WUS bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 322975185 ENCODE Processing Pipeline 82e5c92a4d30ea93d917defad4c07184 https://www.encodeproject.org/files/ENCFF712WUS/@@download/ENCFF712WUS.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF599ZQS bed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF468QVP, ENCFF534PUK, ENCFF884JVT 349214 ENCODE Processing Pipeline 109eb8b98f3bfcc980da4455437df086 https://www.encodeproject.org/files/ENCFF599ZQS/@@download/ENCFF599ZQS.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF782WWH bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 605728203 ENCODE Processing Pipeline 9f1de97dc1d18640e16d4b3d8ed6f825 https://www.encodeproject.org/files/ENCFF782WWH/@@download/ENCFF782WWH.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF572RPI bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF468QVP, ENCFF534PUK, ENCFF884JVT 581020 ENCODE Processing Pipeline f5d8168c6d84925ca4a739a5c960936b https://www.encodeproject.org/files/ENCFF572RPI/@@download/ENCFF572RPI.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF640GZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF572RPI 984917 ENCODE Processing Pipeline 8a33918bcb1b5ac4e4b7e96814fc4cb2 https://www.encodeproject.org/files/ENCFF640GZZ/@@download/ENCFF640GZZ.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF884JVT bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 3980346 ENCODE Processing Pipeline 3d8eb4d0cdb033ad48c6c0794d3812a8 https://www.encodeproject.org/files/ENCFF884JVT/@@download/ENCFF884JVT.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF468QVP bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 4999862 ENCODE Processing Pipeline 7f0b2330a3e54a0928e1c17b0abfddce https://www.encodeproject.org/files/ENCFF468QVP/@@download/ENCFF468QVP.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF342OUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF599ZQS 654440 ENCODE Processing Pipeline c1fb4f3d0a8d4612bae636d370a33ddd https://www.encodeproject.org/files/ENCFF342OUF/@@download/ENCFF342OUF.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF179PKD bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 180558957 ENCODE Processing Pipeline a15aae918d164aab4054c707b15c3afd https://www.encodeproject.org/files/ENCFF179PKD/@@download/ENCFF179PKD.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF645TXU bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 72463915 ENCODE Processing Pipeline 1657545e153d330f2aee610bd733bc1d https://www.encodeproject.org/files/ENCFF645TXU/@@download/ENCFF645TXU.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF325GGH bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 156850681 ENCODE Processing Pipeline 46bf872c21576b68c53f35810f1680a9 https://www.encodeproject.org/files/ENCFF325GGH/@@download/ENCFF325GGH.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF534PUK bed narrowPeak peaks and background as input for IDR ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 4419724 ENCODE Processing Pipeline e5515aea173d6988dbc96b10a4f507ad https://www.encodeproject.org/files/ENCFF534PUK/@@download/ENCFF534PUK.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF991TOJ bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF534PUK 10176707 ENCODE Processing Pipeline a50e4629f045de56cf07b52be1bb0868 https://www.encodeproject.org/files/ENCFF991TOJ/@@download/ENCFF991TOJ.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF584TQY bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF884JVT 10315189 ENCODE Processing Pipeline 98cd1635c9e3dd90d1f4af23b7e444cb https://www.encodeproject.org/files/ENCFF584TQY/@@download/ENCFF584TQY.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF494WLU bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF468QVP 11166178 ENCODE Processing Pipeline 22006fc1a4bec7c44a7b4827a7a1dce0 https://www.encodeproject.org/files/ENCFF494WLU/@@download/ENCFF494WLU.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample ENCFF000WGF bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFR 102829 Peggy Farnham, USC 5d0d673f385dbbde47d8f7036ef5b99f https://www.encodeproject.org/files/ENCFF000WGF/@@download/ENCFF000WGF.bigBed hg19 archived insufficient read length, insufficient read depth ENCFF000WGG bigWig signal ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 293747184 Peggy Farnham, USC 70f6e740dad969d2317cd5833aa7a170 https://www.encodeproject.org/files/ENCFF000WGG/@@download/ENCFF000WGG.bigWig hg19 archived missing derived_from insufficient read length, insufficient read depth ENCFF000WGH bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGS 948311619 Peggy Farnham, USC 0598bca3cebdea8c2a2c2216a5a1844a https://www.encodeproject.org/files/ENCFF000WGH/@@download/ENCFF000WGH.bam hg19 archived insufficient read length, insufficient read depth ENCFF000WGI bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGT 755522287 Peggy Farnham, USC 68b9eeff1db0e056820ef747b7daa3a3 https://www.encodeproject.org/files/ENCFF000WGI/@@download/ENCFF000WGI.bam hg19 archived insufficient read length, insufficient read depth ENCFF000WGS fastq reads ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 809088905 Peggy Farnham, USC 6a4911e5f68490ce13a8ff978aa3bc9d https://www.encodeproject.org/files/ENCFF000WGS/@@download/ENCFF000WGS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length insufficient read length, insufficient read depth ENCFF000WGT fastq reads ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 659899492 Peggy Farnham, USC c4f5e75a74a7f345ee17a19cb85f306f https://www.encodeproject.org/files/ENCFF000WGT/@@download/ENCFF000WGT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length insufficient read length, insufficient read depth ENCFF001VFR bed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 19052 Peggy Farnham, USC 6e441c8e5612b32ee2e38f67a413b2de https://www.encodeproject.org/files/ENCFF001VFR/@@download/ENCFF001VFR.bed.gz hg19 archived missing derived_from insufficient read length, insufficient read depth ENCFF002CPV bed narrowPeak optimal idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 54998 ENCODE Consortium Analysis Working Group fb00e0287a7d814462df012a01632819 https://www.encodeproject.org/files/ENCFF002CPV/@@download/ENCFF002CPV.bed.gz hg19 archived missing derived_from insufficient read length, insufficient read depth ENCFF345SSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPV 230685 ENCODE Consortium b1d3a33540b1e0bad4b5bf646712915f https://www.encodeproject.org/files/ENCFF345SSF/@@download/ENCFF345SSF.bigBed hg19 archived insufficient read length, insufficient read depth ENCFF980QHF bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF643CGH 305073054 ENCODE Processing Pipeline 99209ff0aab47d7ff756414f738b30e9 https://www.encodeproject.org/files/ENCFF980QHF/@@download/ENCFF980QHF.bam GRCh38 released insufficient read length, insufficient read depth ENCFF336WFG bam unfiltered alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF643CGH 898576458 ENCODE Processing Pipeline a897f33c28e6fb80c81b3c7e69f271c1 https://www.encodeproject.org/files/ENCFF336WFG/@@download/ENCFF336WFG.bam GRCh38 released insufficient read length, insufficient read depth ENCFF481GPP bam unfiltered alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF807MUK 895068371 ENCODE Processing Pipeline 066d7a092996d701e7a97959dc174af0 https://www.encodeproject.org/files/ENCFF481GPP/@@download/ENCFF481GPP.bam hg19 released insufficient read length, insufficient read depth ENCFF947RUP bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF807MUK 305144329 ENCODE Processing Pipeline 034a481bf0fde8637d34261c27ecd28f https://www.encodeproject.org/files/ENCFF947RUP/@@download/ENCFF947RUP.bam hg19 released insufficient read length, insufficient read depth ENCFF047WZX bed narrowPeak peaks and background as input for IDR ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 3303727 ENCODE Processing Pipeline a7732936a2aeded2b9bfec77defe7ab5 https://www.encodeproject.org/files/ENCFF047WZX/@@download/ENCFF047WZX.bed.gz hg19 released insufficient read length, insufficient read depth ENCFF059DKD bigWig signal p-value ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 204135478 ENCODE Processing Pipeline 5dcb231ab41261a122949053357a25b9 https://www.encodeproject.org/files/ENCFF059DKD/@@download/ENCFF059DKD.bigWig GRCh38 released insufficient read length, insufficient read depth ENCFF035URQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF902HNO 86677 ENCODE Processing Pipeline 9903813db5c3dade505105b2cb171c29 https://www.encodeproject.org/files/ENCFF035URQ/@@download/ENCFF035URQ.bigBed hg19 released insufficient read length, insufficient read depth ENCFF985ZEV bigWig fold change over control ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 138507744 ENCODE Processing Pipeline 1769a19ff23a92e8563e68493475174d https://www.encodeproject.org/files/ENCFF985ZEV/@@download/ENCFF985ZEV.bigWig GRCh38 released insufficient read length, insufficient read depth ENCFF437STB bigWig signal p-value ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 203665305 ENCODE Processing Pipeline 3cee5eb2a57fce01c66e7783ce1e6afe https://www.encodeproject.org/files/ENCFF437STB/@@download/ENCFF437STB.bigWig hg19 released insufficient read length, insufficient read depth ENCFF529ADX bed narrowPeak peaks and background as input for IDR ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 3606049 ENCODE Processing Pipeline bea2ad34bdfb1dd4c1ec4f7d6e93a3ce https://www.encodeproject.org/files/ENCFF529ADX/@@download/ENCFF529ADX.bed.gz GRCh38 released insufficient read length, insufficient read depth ENCFF939USR bigWig fold change over control ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 136609621 ENCODE Processing Pipeline bcae4263a5cfdde532959f5d5560d3c0 https://www.encodeproject.org/files/ENCFF939USR/@@download/ENCFF939USR.bigWig hg19 released insufficient read length, insufficient read depth ENCFF416MJG bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF529ADX 9023848 ENCODE Processing Pipeline c507aee108bc7a4f5fc9634291285a75 https://www.encodeproject.org/files/ENCFF416MJG/@@download/ENCFF416MJG.bigBed GRCh38 released insufficient read length, insufficient read depth ENCFF752IXD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF419RSJ, ENCFF529ADX 18092 ENCODE Processing Pipeline d1a0d9091995e8773e2be9478697ff8a https://www.encodeproject.org/files/ENCFF752IXD/@@download/ENCFF752IXD.bed.gz GRCh38 released insufficient read length, insufficient read depth ENCFF913EAA bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF047WZX 8411782 ENCODE Processing Pipeline b7ceb7714767cddec5aac5514ae7a6ca https://www.encodeproject.org/files/ENCFF913EAA/@@download/ENCFF913EAA.bigBed hg19 released insufficient read length, insufficient read depth ENCFF841DIU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF752IXD 85343 ENCODE Processing Pipeline 1c5225289458093f44abcc0d47ad0260 https://www.encodeproject.org/files/ENCFF841DIU/@@download/ENCFF841DIU.bigBed GRCh38 released insufficient read length, insufficient read depth ENCFF902HNO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF001TDO, ENCFF047WZX 18914 ENCODE Processing Pipeline 6f19e637913b758ce50ecff6b0fd36e8 https://www.encodeproject.org/files/ENCFF902HNO/@@download/ENCFF902HNO.bed.gz hg19 released insufficient read length, insufficient read depth ENCFF000VYZ bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VZL 342046837 Michael Snyder, Stanford 50a3d79a271cdd2ea7d2a2003f9a2c6c https://www.encodeproject.org/files/ENCFF000VYZ/@@download/ENCFF000VYZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VZA bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VES 590373 Michael Snyder, Stanford 16ef6f78304a63f262ddec97a13a8a0e https://www.encodeproject.org/files/ENCFF000VZA/@@download/ENCFF000VZA.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VZB bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VZK 337874036 Michael Snyder, Stanford 235981dcb3c84fa824c59b98f56c12f7 https://www.encodeproject.org/files/ENCFF000VZB/@@download/ENCFF000VZB.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000VZC bigWig signal ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 225712125 Michael Snyder, Stanford 4d159a4c555faaff9627242549ab051d https://www.encodeproject.org/files/ENCFF000VZC/@@download/ENCFF000VZC.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VZK fastq reads ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 787362099 Michael Snyder, Stanford 70db7cecda0a62ef55962c7adffb3f9b https://www.encodeproject.org/files/ENCFF000VZK/@@download/ENCFF000VZK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000VZL fastq reads ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 822262478 Michael Snyder, Stanford 7c988732c669e03b6769d7e64e70305b https://www.encodeproject.org/files/ENCFF000VZL/@@download/ENCFF000VZL.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample ENCFF001VES bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 247686 Michael Snyder, Stanford 7e2d6c073f6790d08b075c859885f50c https://www.encodeproject.org/files/ENCFF001VES/@@download/ENCFF001VES.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 21770 ENCODE Consortium Analysis Working Group ce7292661cd93ab37f47d9f30154a57f https://www.encodeproject.org/files/ENCFF002COZ/@@download/ENCFF002COZ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF409JUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COZ 142998 ENCODE Consortium 308e536fb353dcd0ec38451696fc7adb https://www.encodeproject.org/files/ENCFF409JUS/@@download/ENCFF409JUS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF851SSC bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF643CGH 864918679 ENCODE Processing Pipeline 9476dfe667b53b6db90d6f227bfe0863 https://www.encodeproject.org/files/ENCFF851SSC/@@download/ENCFF851SSC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF254WNB bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF643CGH 384575975 ENCODE Processing Pipeline dd75130d952c08aa5fa6b9334f7bfcfa https://www.encodeproject.org/files/ENCFF254WNB/@@download/ENCFF254WNB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF553YRB bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF643CGH 799020385 ENCODE Processing Pipeline 2b9a60a49942bc4881f2d2968438e7ff https://www.encodeproject.org/files/ENCFF553YRB/@@download/ENCFF553YRB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF952AWV bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF643CGH 517074625 ENCODE Processing Pipeline d86ca3c98b08f67efe8fea8fe2056a23 https://www.encodeproject.org/files/ENCFF952AWV/@@download/ENCFF952AWV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF247VET bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF807MUK 862279634 ENCODE Processing Pipeline ede5dbd522e6e33331378c90e3791661 https://www.encodeproject.org/files/ENCFF247VET/@@download/ENCFF247VET.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF888UWI bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF807MUK 795867286 ENCODE Processing Pipeline 6b107f4ea589a8d49738ff09296f3bba https://www.encodeproject.org/files/ENCFF888UWI/@@download/ENCFF888UWI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF570FPY bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF807MUK 517287432 ENCODE Processing Pipeline 6981524f7c55d436099a65ec5d1dbb34 https://www.encodeproject.org/files/ENCFF570FPY/@@download/ENCFF570FPY.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF442GDP bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF807MUK 382598184 ENCODE Processing Pipeline d9c9e6d0eef35e9c0843fe468210d684 https://www.encodeproject.org/files/ENCFF442GDP/@@download/ENCFF442GDP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF963YNY bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 211110223 ENCODE Processing Pipeline a6cea7ed8bc8c2173fdc5ebb5740f6fe https://www.encodeproject.org/files/ENCFF963YNY/@@download/ENCFF963YNY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF684EGR bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 352089605 ENCODE Processing Pipeline ae74115c5bf8dc0ba52eaa673079da61 https://www.encodeproject.org/files/ENCFF684EGR/@@download/ENCFF684EGR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF766ERZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF126LPK, ENCFF168WPY, ENCFF955NAK 2372 ENCODE Processing Pipeline 95644ae74fe0934d417696338f134eae https://www.encodeproject.org/files/ENCFF766ERZ/@@download/ENCFF766ERZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF387KYD bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 209314661 ENCODE Processing Pipeline 73d4d78895f26e9bd385e0916e82b2cb https://www.encodeproject.org/files/ENCFF387KYD/@@download/ENCFF387KYD.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF667XYV bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 3632236 ENCODE Processing Pipeline d816706f41e40cc384584cd9d4a646c1 https://www.encodeproject.org/files/ENCFF667XYV/@@download/ENCFF667XYV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF733VJI bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF667XYV 8076522 ENCODE Processing Pipeline aac4fbe3dd07cc8c75c599fbc10b0b2f https://www.encodeproject.org/files/ENCFF733VJI/@@download/ENCFF733VJI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF215YSS bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 179106885 ENCODE Processing Pipeline 6c11f221aca60e1fce215667a71e489e https://www.encodeproject.org/files/ENCFF215YSS/@@download/ENCFF215YSS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF168WPY bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 3633448 ENCODE Processing Pipeline 8d71854bcea9e4b356e0a56e50d8fadc https://www.encodeproject.org/files/ENCFF168WPY/@@download/ENCFF168WPY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF729STF bed narrowPeak conservative idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF126LPK, ENCFF168WPY, ENCFF955NAK 1989 ENCODE Processing Pipeline 9c1045dd64c024f0bafeb37ebda74a59 https://www.encodeproject.org/files/ENCFF729STF/@@download/ENCFF729STF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF822KDC bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 201633635 ENCODE Processing Pipeline 1fb861774e66fe668e0a800d6081e0b9 https://www.encodeproject.org/files/ENCFF822KDC/@@download/ENCFF822KDC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF622RJT bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF955NAK 69049 ENCODE Processing Pipeline 51f10ebc33d88b384b59efa29b544195 https://www.encodeproject.org/files/ENCFF622RJT/@@download/ENCFF622RJT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF102VQL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF729STF 46655 ENCODE Processing Pipeline c57ddd0673b4f3046dcc1288ed79badf https://www.encodeproject.org/files/ENCFF102VQL/@@download/ENCFF102VQL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF126LPK bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 16440 ENCODE Processing Pipeline 463c61ace235cf292207aef54c3928c2 https://www.encodeproject.org/files/ENCFF126LPK/@@download/ENCFF126LPK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF838MMK bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF126LPK 99446 ENCODE Processing Pipeline 16edba844434a8d22c41d58724aaa2d7 https://www.encodeproject.org/files/ENCFF838MMK/@@download/ENCFF838MMK.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF302FDV bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF168WPY 8083024 ENCODE Processing Pipeline 91df51457e0d4fc63569d70db323687f https://www.encodeproject.org/files/ENCFF302FDV/@@download/ENCFF302FDV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF319XGS bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 203625998 ENCODE Processing Pipeline 0279fb59405528f82bab420bc1149897 https://www.encodeproject.org/files/ENCFF319XGS/@@download/ENCFF319XGS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF684PZF bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 213259327 ENCODE Processing Pipeline da5cbe1244cf8f6b838785bcedcf855e https://www.encodeproject.org/files/ENCFF684PZF/@@download/ENCFF684PZF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF261GHD bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 203880871 ENCODE Processing Pipeline a7a1aa7617f54bcaeec7c2d9709cb43f https://www.encodeproject.org/files/ENCFF261GHD/@@download/ENCFF261GHD.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF955NAK bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 5479 ENCODE Processing Pipeline b1936af0d64b4ab0da80648a0919ba88 https://www.encodeproject.org/files/ENCFF955NAK/@@download/ENCFF955NAK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF732JDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF766ERZ 39940 ENCODE Processing Pipeline 5cf7e0bdd9b9b863bedb177dcb6d675b https://www.encodeproject.org/files/ENCFF732JDM/@@download/ENCFF732JDM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF068IBC bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 186014173 ENCODE Processing Pipeline 1e0fff659dacac3a98e426d3e6e4afae https://www.encodeproject.org/files/ENCFF068IBC/@@download/ENCFF068IBC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF783BIT bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 3432630 ENCODE Processing Pipeline 3e2678673ffb95e3d733b662f5756641 https://www.encodeproject.org/files/ENCFF783BIT/@@download/ENCFF783BIT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF175XNJ bed narrowPeak peaks and background as input for IDR ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 16381 ENCODE Processing Pipeline c99b62383a1a9dd5aeb8b9a13c7b7b0e https://www.encodeproject.org/files/ENCFF175XNJ/@@download/ENCFF175XNJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF743UMZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF175XNJ, ENCFF419RSJ, ENCFF667XYV, ENCFF783BIT 3639 ENCODE Processing Pipeline 38ba7523d6f397303eccb71577377434 https://www.encodeproject.org/files/ENCFF743UMZ/@@download/ENCFF743UMZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF259PLH bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 204439552 ENCODE Processing Pipeline 6b67751c39eaf80264f07c9cb264a5ec https://www.encodeproject.org/files/ENCFF259PLH/@@download/ENCFF259PLH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF617IUX bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF783BIT 7099879 ENCODE Processing Pipeline 37be99f18c8b8825d6517ccf7e7ccaee https://www.encodeproject.org/files/ENCFF617IUX/@@download/ENCFF617IUX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF328PVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF743UMZ 48864 ENCODE Processing Pipeline 0bbd7f3237a6171aab5946dfa0d24554 https://www.encodeproject.org/files/ENCFF328PVT/@@download/ENCFF328PVT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF561GWG bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 213019798 ENCODE Processing Pipeline 9233fb221b8c5d8c11e7d1bcf28fd9ec https://www.encodeproject.org/files/ENCFF561GWG/@@download/ENCFF561GWG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF434QQH bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF175XNJ 88140 ENCODE Processing Pipeline de2f48b0b00bc4e3891cb9afa1c70466 https://www.encodeproject.org/files/ENCFF434QQH/@@download/ENCFF434QQH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF899KXS bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 355218701 ENCODE Processing Pipeline 10e07e90e0416b5b9fde03973b98a3dc https://www.encodeproject.org/files/ENCFF899KXS/@@download/ENCFF899KXS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF000NSQ bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTD 798310641 Richard Myers, HAIB 14d6536cf61a080893a59b58195b0088 https://www.encodeproject.org/files/ENCFF000NSQ/@@download/ENCFF000NSQ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSR bigBed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWH 592417 Richard Myers, HAIB e3c7a6a983e9af6c40f899d97ad0ea12 https://www.encodeproject.org/files/ENCFF000NSR/@@download/ENCFF000NSR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSS bigBed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWI 642458 Richard Myers, HAIB 8f6af20793dca306c34e7b47baacfd4f https://www.encodeproject.org/files/ENCFF000NSS/@@download/ENCFF000NSS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NST bigWig raw signal ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 18875729 Richard Myers, HAIB dddabb53ed22eb305e670e1f3c9b4203 https://www.encodeproject.org/files/ENCFF000NST/@@download/ENCFF000NST.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NSU bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTH 1036320033 Richard Myers, HAIB 08f595f266aa5717c6b9c3799fad10ab https://www.encodeproject.org/files/ENCFF000NSU/@@download/ENCFF000NSU.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSV bigWig raw signal ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 23184417 Richard Myers, HAIB 21d22c190b57dc86138d137b2fdb1345 https://www.encodeproject.org/files/ENCFF000NSV/@@download/ENCFF000NSV.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NTD fastq reads ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 916514718 Richard Myers, HAIB b9b3ef998932ad5d5b1fa6ea0c9043b8 https://www.encodeproject.org/files/ENCFF000NTD/@@download/ENCFF000NTD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NTH fastq reads ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1744280834 Richard Myers, HAIB b94fc9c3ce2176aff652256f3edd098e https://www.encodeproject.org/files/ENCFF000NTH/@@download/ENCFF000NTH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWH bed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 335357 Richard Myers, HAIB 37c8310d98d70a714fa58cd95d8b977c https://www.encodeproject.org/files/ENCFF001TWH/@@download/ENCFF001TWH.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWI bed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 393755 Richard Myers, HAIB 92fd2779ecf7b7233e63ecfe59d28586 https://www.encodeproject.org/files/ENCFF001TWI/@@download/ENCFF001TWI.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGR bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 348483 ENCODE Consortium Analysis Working Group 52a244b336de35419f0cd40fab2edae1 https://www.encodeproject.org/files/ENCFF002CGR/@@download/ENCFF002CGR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF201UXH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGR 802318 ENCODE Consortium 39fa2c3d07d702aa4b92455811c0c298 https://www.encodeproject.org/files/ENCFF201UXH/@@download/ENCFF201UXH.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF272XDG bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF643CGH 1175272994 ENCODE Processing Pipeline 74d23f5a035ddfef73828dddc7502f62 https://www.encodeproject.org/files/ENCFF272XDG/@@download/ENCFF272XDG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF580GMF bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF643CGH 602501977 ENCODE Processing Pipeline 94b4053388ea077f3747ac5ca8b62eeb https://www.encodeproject.org/files/ENCFF580GMF/@@download/ENCFF580GMF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF724BUK bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF643CGH 2081958734 ENCODE Processing Pipeline e9c97b52ef4a39d181c3f89b088be1c6 https://www.encodeproject.org/files/ENCFF724BUK/@@download/ENCFF724BUK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF942EVB bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF643CGH 659787864 ENCODE Processing Pipeline 345745904ae4ca112c8baf19fe967213 https://www.encodeproject.org/files/ENCFF942EVB/@@download/ENCFF942EVB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF197DUH bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF807MUK 602023696 ENCODE Processing Pipeline d0dd6cf2fb23ac07a469f78a48d255fe https://www.encodeproject.org/files/ENCFF197DUH/@@download/ENCFF197DUH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF481NAE bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF807MUK 1171825458 ENCODE Processing Pipeline d4a6c28ae9f699894173cacaae282486 https://www.encodeproject.org/files/ENCFF481NAE/@@download/ENCFF481NAE.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF264DVB bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF807MUK 2074883303 ENCODE Processing Pipeline e6f64c30c39e50c7d5062b5ec57ed535 https://www.encodeproject.org/files/ENCFF264DVB/@@download/ENCFF264DVB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF671MIT bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF807MUK 653477560 ENCODE Processing Pipeline 269bab4ee54ad9d3479c0b3d763640b3 https://www.encodeproject.org/files/ENCFF671MIT/@@download/ENCFF671MIT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF259YEO bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 451602544 ENCODE Processing Pipeline 3b420512124039be983869c261873117 https://www.encodeproject.org/files/ENCFF259YEO/@@download/ENCFF259YEO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF189FMI bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 408148080 ENCODE Processing Pipeline 745b72aefb2023900b870e93b343f5ee https://www.encodeproject.org/files/ENCFF189FMI/@@download/ENCFF189FMI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF477CIW bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 5676608 ENCODE Processing Pipeline a91e86375410e2cf92fb9e8992e1e8c0 https://www.encodeproject.org/files/ENCFF477CIW/@@download/ENCFF477CIW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF698MPT bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 784304258 ENCODE Processing Pipeline aca7e50c0b2ebf4db366dd147881b062 https://www.encodeproject.org/files/ENCFF698MPT/@@download/ENCFF698MPT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF531WVY bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 272400610 ENCODE Processing Pipeline 8f47b4b78b9862978aa8503c81526dac https://www.encodeproject.org/files/ENCFF531WVY/@@download/ENCFF531WVY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF898IWR bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 622052740 ENCODE Processing Pipeline 35a7b6655d8601bfc941cd3598f6f183 https://www.encodeproject.org/files/ENCFF898IWR/@@download/ENCFF898IWR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF387RPM bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 4558380 ENCODE Processing Pipeline 5a65843678ca994a33aeb8ec78b8a45c https://www.encodeproject.org/files/ENCFF387RPM/@@download/ENCFF387RPM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF242YZT bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF387RPM 10528558 ENCODE Processing Pipeline ff8d0894c6afd70110a612047b2a5548 https://www.encodeproject.org/files/ENCFF242YZT/@@download/ENCFF242YZT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF582ENM bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF477CIW 11274116 ENCODE Processing Pipeline 065579ea712626634eff1a6e36bfe9bc https://www.encodeproject.org/files/ENCFF582ENM/@@download/ENCFF582ENM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF383HAY bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387RPM, ENCFF419RSJ, ENCFF422WOY, ENCFF477CIW 328184 ENCODE Processing Pipeline c5947f54d87171e46178f9074dfe3a23 https://www.encodeproject.org/files/ENCFF383HAY/@@download/ENCFF383HAY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF885IAM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF383HAY 624319 ENCODE Processing Pipeline 4a55db64b31272c0da2bf7feab60cd5c https://www.encodeproject.org/files/ENCFF885IAM/@@download/ENCFF885IAM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF330IWH bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 275005443 ENCODE Processing Pipeline 438ca0332e8a7a1818dbee39ad7bf600 https://www.encodeproject.org/files/ENCFF330IWH/@@download/ENCFF330IWH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF739LNZ bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF422WOY 10591326 ENCODE Processing Pipeline 4664fd30f04a29e9ab990de25bc6ff61 https://www.encodeproject.org/files/ENCFF739LNZ/@@download/ENCFF739LNZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF800HNH bed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387RPM, ENCFF419RSJ, ENCFF422WOY, ENCFF477CIW 269469 ENCODE Processing Pipeline dd0026780d77710d5d385765ea0da957 https://www.encodeproject.org/files/ENCFF800HNH/@@download/ENCFF800HNH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF422WOY bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 4506731 ENCODE Processing Pipeline dfcbaee834de0215d635b6817c9ea54d https://www.encodeproject.org/files/ENCFF422WOY/@@download/ENCFF422WOY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF425CMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF800HNH 541580 ENCODE Processing Pipeline d44311431813cbe6cc3655e0d8170c0f https://www.encodeproject.org/files/ENCFF425CMP/@@download/ENCFF425CMP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF474WLQ bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 480537953 ENCODE Processing Pipeline 584503fdacd8a923f1e032b91af6521b https://www.encodeproject.org/files/ENCFF474WLQ/@@download/ENCFF474WLQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF153DRT bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 408212598 ENCODE Processing Pipeline 5fe3d9b14e0d68d6f8a7dfa230a0f88b https://www.encodeproject.org/files/ENCFF153DRT/@@download/ENCFF153DRT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF805DGI bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 273215822 ENCODE Processing Pipeline 1bc89594f13a0f6c011bdadb59a546f6 https://www.encodeproject.org/files/ENCFF805DGI/@@download/ENCFF805DGI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF777JWC bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 934078028 ENCODE Processing Pipeline 5d10c6da8dc477218594e95a80c78edb https://www.encodeproject.org/files/ENCFF777JWC/@@download/ENCFF777JWC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF495MTX bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 274629450 ENCODE Processing Pipeline 61fad61894c350b97895ccf041fc8103 https://www.encodeproject.org/files/ENCFF495MTX/@@download/ENCFF495MTX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF822XUX bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF046PLS 10679652 ENCODE Processing Pipeline 4af08eb3bb0aa9ff8e2a8e29d8c5ee1c https://www.encodeproject.org/files/ENCFF822XUX/@@download/ENCFF822XUX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF409EVE bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289FQM 10636739 ENCODE Processing Pipeline f016e6eba255be4100a258ea81eb6cb1 https://www.encodeproject.org/files/ENCFF409EVE/@@download/ENCFF409EVE.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF667QBX bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080MVF 11365028 ENCODE Processing Pipeline a5f1b771fb481a6d6b671a52c2e462eb https://www.encodeproject.org/files/ENCFF667QBX/@@download/ENCFF667QBX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF049DFX bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 647577344 ENCODE Processing Pipeline 2e174e6ffcdec803eb133c5bb3ea431b https://www.encodeproject.org/files/ENCFF049DFX/@@download/ENCFF049DFX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF080MVF bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 5751017 ENCODE Processing Pipeline 97971d74f93cbb224e9ceeada695cfb3 https://www.encodeproject.org/files/ENCFF080MVF/@@download/ENCFF080MVF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF046PLS bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 4572072 ENCODE Processing Pipeline a49f776dcecfc81d1074693be4a16e5e https://www.encodeproject.org/files/ENCFF046PLS/@@download/ENCFF046PLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF289FQM bed narrowPeak peaks and background as input for IDR ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 4637535 ENCODE Processing Pipeline adf6c66b00665025515bad11517e18ef https://www.encodeproject.org/files/ENCFF289FQM/@@download/ENCFF289FQM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF220QMP bed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF046PLS, ENCFF080MVF, ENCFF289FQM 276903 ENCODE Processing Pipeline b25a27c2324b76b9f5e1fa777f7be77d https://www.encodeproject.org/files/ENCFF220QMP/@@download/ENCFF220QMP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441FOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF220QMP 553783 ENCODE Processing Pipeline 33dffaa392b6ca1c693456ea2812355e https://www.encodeproject.org/files/ENCFF441FOB/@@download/ENCFF441FOB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF143BUR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468MFY 654468 ENCODE Processing Pipeline 998f12cc78ae685341e96bfce7ab19e0 https://www.encodeproject.org/files/ENCFF143BUR/@@download/ENCFF143BUR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF468MFY bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF046PLS, ENCFF080MVF, ENCFF289FQM 345367 ENCODE Processing Pipeline 7f180aca1612b6d01a7e549b1e685303 https://www.encodeproject.org/files/ENCFF468MFY/@@download/ENCFF468MFY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441MWI fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 1 101 paired-ended 2 ENCFF212KHQ 4226377854 Michael Snyder, Stanford cebcb895cfe0e86b82ffe1a9e64010bc SRA:SRR6214382 https://www.encodeproject.org/files/ENCFF441MWI/@@download/ENCFF441MWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF670NUT bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 1327195663 ENCODE Processing Pipeline 4a61f85bb78e3b9ac94a86e7c1d47749 https://www.encodeproject.org/files/ENCFF670NUT/@@download/ENCFF670NUT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF981FOD bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 1280304414 ENCODE Processing Pipeline d325f78df266a2c27a1e4740aba49966 https://www.encodeproject.org/files/ENCFF981FOD/@@download/ENCFF981FOD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002ELC fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EKY 2540683078 Michael Snyder, Stanford 1882eefc2da684f4e1ea638b40304229 SRA:SRR6214383 https://www.encodeproject.org/files/ENCFF002ELC/@@download/ENCFF002ELC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EKY fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 100 paired-ended 2 ENCFF002ELC 2534760216 Michael Snyder, Stanford b574002e1edac78bdbf66a6b8eead62a SRA:SRR6214383 https://www.encodeproject.org/files/ENCFF002EKY/@@download/ENCFF002EKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF212KHQ fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 1 101 paired-ended 1 ENCFF441MWI 4243944032 Michael Snyder, Stanford 667cbfe76ad9534b410e934334d89302 SRA:SRR6214382 https://www.encodeproject.org/files/ENCFF212KHQ/@@download/ENCFF212KHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF264CPI bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF643CGH 7970879019 ENCODE Processing Pipeline cc6347392cb17aac04645cf71b865ac1 https://www.encodeproject.org/files/ENCFF264CPI/@@download/ENCFF264CPI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF783MVK bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF643CGH 5535020259 ENCODE Processing Pipeline 9d5f5c0ea7de82c340debee84bcc1d47 https://www.encodeproject.org/files/ENCFF783MVK/@@download/ENCFF783MVK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF948HZE bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF643CGH 4514260906 ENCODE Processing Pipeline 6cb72b6016d7d982384f673dc48d4143 https://www.encodeproject.org/files/ENCFF948HZE/@@download/ENCFF948HZE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF888KPM bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF643CGH 6371525075 ENCODE Processing Pipeline e1cc41ab0edf0a0561070241c9a32b3d https://www.encodeproject.org/files/ENCFF888KPM/@@download/ENCFF888KPM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF470PZL bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF807MUK 7967069173 ENCODE Processing Pipeline cb219fa4a738d8d1aa6cc90989f487dc https://www.encodeproject.org/files/ENCFF470PZL/@@download/ENCFF470PZL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF831TJK bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF807MUK 5533095001 ENCODE Processing Pipeline 085f9d15e2bfb0313d22c89e764090f9 https://www.encodeproject.org/files/ENCFF831TJK/@@download/ENCFF831TJK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF750OED bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF807MUK 4498058693 ENCODE Processing Pipeline db12297dbdb73737b404efbbfed07062 https://www.encodeproject.org/files/ENCFF750OED/@@download/ENCFF750OED.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF963AMS bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF807MUK 6364770670 ENCODE Processing Pipeline 4ee72f4e128b61c0ee1d3803dabf54c3 https://www.encodeproject.org/files/ENCFF963AMS/@@download/ENCFF963AMS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF936FBJ bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 7020973 ENCODE Processing Pipeline 8d9afc4352dcd6f2d43d5069a8180764 https://www.encodeproject.org/files/ENCFF936FBJ/@@download/ENCFF936FBJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF897DBV bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF936FBJ 13298787 ENCODE Processing Pipeline 3c02675c14e1037a0b00b88edc2202f8 https://www.encodeproject.org/files/ENCFF897DBV/@@download/ENCFF897DBV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF838XPB bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF683IDH 13359120 ENCODE Processing Pipeline b9887ac61f7b1eef0a928d32ba47efc5 https://www.encodeproject.org/files/ENCFF838XPB/@@download/ENCFF838XPB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF034OSV bed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC, ENCFF361KFY, ENCFF419RSJ, ENCFF683IDH 366232 ENCODE Processing Pipeline 3154e6dbd048446b9a6f28cf7d56dca6 https://www.encodeproject.org/files/ENCFF034OSV/@@download/ENCFF034OSV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF452IKX bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 6292856 ENCODE Processing Pipeline e087f7653bfb7dfad4d5c46fbce23fc5 https://www.encodeproject.org/files/ENCFF452IKX/@@download/ENCFF452IKX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593XIS bed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF001TDO, ENCFF436OTJ, ENCFF452IKX, ENCFF936FBJ 190017 ENCODE Processing Pipeline 92570a1e7f98c2d607474726346a0cde https://www.encodeproject.org/files/ENCFF593XIS/@@download/ENCFF593XIS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF942SCN bigBed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF593XIS 458738 ENCODE Processing Pipeline 664c392c664be71756cc4e6e956e69e3 https://www.encodeproject.org/files/ENCFF942SCN/@@download/ENCFF942SCN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF601XVA bed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF001TDO, ENCFF436OTJ, ENCFF452IKX, ENCFF936FBJ 363397 ENCODE Processing Pipeline 04fd5d92531b46908c2f3bf60b199d9a https://www.encodeproject.org/files/ENCFF601XVA/@@download/ENCFF601XVA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF408DUR bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 1286066206 ENCODE Processing Pipeline 689f2f0e098e24f3268ca86f6e0ed3b7 https://www.encodeproject.org/files/ENCFF408DUR/@@download/ENCFF408DUR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF845OZT bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 1897444575 ENCODE Processing Pipeline 8c5adfae83ec9a1415cbae8d4275c708 https://www.encodeproject.org/files/ENCFF845OZT/@@download/ENCFF845OZT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF218UGC bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 7263147 ENCODE Processing Pipeline 3f0d14778c058bb2a72881f3d74f0b57 https://www.encodeproject.org/files/ENCFF218UGC/@@download/ENCFF218UGC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF045NMS bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 1824419241 ENCODE Processing Pipeline cf8030be08c12b8626bc358683735cda https://www.encodeproject.org/files/ENCFF045NMS/@@download/ENCFF045NMS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF101QLW bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 2063859283 ENCODE Processing Pipeline 8f5191578e32250859f982d34e0f2759 https://www.encodeproject.org/files/ENCFF101QLW/@@download/ENCFF101QLW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF867SNZ bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 1939019344 ENCODE Processing Pipeline ea5a8c1ae59384cfc86da7a66af8c876 https://www.encodeproject.org/files/ENCFF867SNZ/@@download/ENCFF867SNZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF487HQU bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 2397303644 ENCODE Processing Pipeline 3036d06509aa329a1f3bfb0deef6fefc https://www.encodeproject.org/files/ENCFF487HQU/@@download/ENCFF487HQU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF436OTJ bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 7256723 ENCODE Processing Pipeline 9de1f75678c2a35eaeb453874ead220d https://www.encodeproject.org/files/ENCFF436OTJ/@@download/ENCFF436OTJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF753SOI bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF452IKX 13354759 ENCODE Processing Pipeline ce2a23a6bf3ce36b40869f1edb5e046d https://www.encodeproject.org/files/ENCFF753SOI/@@download/ENCFF753SOI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF234BHC bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF436OTJ 13217182 ENCODE Processing Pipeline 37d574002f99c0c401552ffdbc8e8adc https://www.encodeproject.org/files/ENCFF234BHC/@@download/ENCFF234BHC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF372WMI bigBed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF601XVA 753897 ENCODE Processing Pipeline 8a8bf5b75a2b05ca157d05c429b39b5f https://www.encodeproject.org/files/ENCFF372WMI/@@download/ENCFF372WMI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF228WPE bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 1207281775 ENCODE Processing Pipeline 289554635577f6f83648db21c73c4e55 https://www.encodeproject.org/files/ENCFF228WPE/@@download/ENCFF228WPE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF545CFR bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 1875156970 ENCODE Processing Pipeline 3fc2bea42e1b4f872acb82e4f1603c79 https://www.encodeproject.org/files/ENCFF545CFR/@@download/ENCFF545CFR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF422OFG bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 2256484233 ENCODE Processing Pipeline 6c00437cbac2045404f083a2fee849e7 https://www.encodeproject.org/files/ENCFF422OFG/@@download/ENCFF422OFG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609ZOH bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 2393755573 ENCODE Processing Pipeline 031bd0ea3e7ac80627f645243c0f23f7 https://www.encodeproject.org/files/ENCFF609ZOH/@@download/ENCFF609ZOH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF683IDH bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 6288901 ENCODE Processing Pipeline 6d524249fb903b98b108ebe14ef70e8d https://www.encodeproject.org/files/ENCFF683IDH/@@download/ENCFF683IDH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF361KFY bed narrowPeak peaks and background as input for IDR ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 7006746 ENCODE Processing Pipeline 91df60bc3cd3b0f0b52121b26d86b1db https://www.encodeproject.org/files/ENCFF361KFY/@@download/ENCFF361KFY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF795OKJ bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF361KFY 13293359 ENCODE Processing Pipeline 225aca853f7163cbdab8be61aa9ff48f https://www.encodeproject.org/files/ENCFF795OKJ/@@download/ENCFF795OKJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF409JWS bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC 13223721 ENCODE Processing Pipeline b2eb2842a80ab585b9dadc6373ecceb0 https://www.encodeproject.org/files/ENCFF409JWS/@@download/ENCFF409JWS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF347MAZ bed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC, ENCFF361KFY, ENCFF419RSJ, ENCFF683IDH 191256 ENCODE Processing Pipeline b9d017cf72abd2fe43f3bef801ec220f https://www.encodeproject.org/files/ENCFF347MAZ/@@download/ENCFF347MAZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF586KOB bigBed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF347MAZ 462171 ENCODE Processing Pipeline c1d3640fd15af0f9e5dec29576aac506 https://www.encodeproject.org/files/ENCFF586KOB/@@download/ENCFF586KOB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF853WAM bigBed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF034OSV 757448 ENCODE Processing Pipeline fda91db2940e8a16251e85de49790176 https://www.encodeproject.org/files/ENCFF853WAM/@@download/ENCFF853WAM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF750SGF bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF807MUK 1759779077 ENCODE Processing Pipeline e3c844318b016df5a94cc5be6b7d0704 https://www.encodeproject.org/files/ENCFF750SGF/@@download/ENCFF750SGF.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF312NBZ bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF807MUK 1473241713 ENCODE Processing Pipeline 487cd4c6e73be9aaed0fe2abcb62cf5b https://www.encodeproject.org/files/ENCFF312NBZ/@@download/ENCFF312NBZ.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF379ZPU fastq reads ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1690922156 Richard Myers, HAIB 3bd1e62df98375562adbcdf50ecce66c SRA:SRR5339519 https://www.encodeproject.org/files/ENCFF379ZPU/@@download/ENCFF379ZPU.fastq.gz Illumina HiSeq 2000 /files/ENCFF598SBH/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF002XBK fastq reads ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1379169647 Richard Myers, HAIB 79bd79cb4459b489a5a912701e282073 SRA:SRR5339520 https://www.encodeproject.org/files/ENCFF002XBK/@@download/ENCFF002XBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF180PND/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF415ELX bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF002XBK, ENCFF807MUK 1044519136 ENCODE Processing Pipeline 13e6683d64d2588547b5a1eb39ee29d3 https://www.encodeproject.org/files/ENCFF415ELX/@@download/ENCFF415ELX.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF273TMW bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF379ZPU, ENCFF807MUK 1148336341 ENCODE Processing Pipeline e5f429085ec94ae3ee92992d61f14d79 https://www.encodeproject.org/files/ENCFF273TMW/@@download/ENCFF273TMW.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF572EMD bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 686901085 ENCODE Processing Pipeline e076e3b0bf0b0ff5b4b99684bf7dba88 https://www.encodeproject.org/files/ENCFF572EMD/@@download/ENCFF572EMD.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF807BAZ bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 716568593 ENCODE Processing Pipeline f49ecb872d3a8d6b9da0e64e68e54274 https://www.encodeproject.org/files/ENCFF807BAZ/@@download/ENCFF807BAZ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF435WMH bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 1291186435 ENCODE Processing Pipeline a83f49eb5de13ada4aba41624f060346 https://www.encodeproject.org/files/ENCFF435WMH/@@download/ENCFF435WMH.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF661UGV bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 598412374 ENCODE Processing Pipeline 533aaa9e343547610c3430bfa6ee2992 https://www.encodeproject.org/files/ENCFF661UGV/@@download/ENCFF661UGV.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF903YLG bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 588780231 ENCODE Processing Pipeline 2850243a46a8b593eced3400add1b6ed https://www.encodeproject.org/files/ENCFF903YLG/@@download/ENCFF903YLG.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF967YUJ bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF332JOV 13480172 ENCODE Processing Pipeline 79c1eae63b6903f735f5d6d8d63df578 https://www.encodeproject.org/files/ENCFF967YUJ/@@download/ENCFF967YUJ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF671XIQ bigBed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF784PEF 1175008 ENCODE Processing Pipeline 4474ba8b4203dd859f42e1f9b8db0680 https://www.encodeproject.org/files/ENCFF671XIQ/@@download/ENCFF671XIQ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF294GPL bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 7002346 ENCODE Processing Pipeline 57c3414a49c09072108ead425ced593a https://www.encodeproject.org/files/ENCFF294GPL/@@download/ENCFF294GPL.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF332JOV bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 5852019 ENCODE Processing Pipeline 808c26e98d7e74b9fb8bd0df63eea746 https://www.encodeproject.org/files/ENCFF332JOV/@@download/ENCFF332JOV.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF329YKA bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF236WSQ 13545874 ENCODE Processing Pipeline ea69c3ab961b672893a39aa6a0cf98e4 https://www.encodeproject.org/files/ENCFF329YKA/@@download/ENCFF329YKA.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF784PEF bed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF236WSQ, ENCFF294GPL, ENCFF332JOV 553142 ENCODE Processing Pipeline 3fede0783916eef96e713883690d0993 https://www.encodeproject.org/files/ENCFF784PEF/@@download/ENCFF784PEF.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF313QLM bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF294GPL 13704133 ENCODE Processing Pipeline 00c5b76ff0fb8559ab1c1a07cf17f051 https://www.encodeproject.org/files/ENCFF313QLM/@@download/ENCFF313QLM.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF939TZS bed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF236WSQ, ENCFF294GPL, ENCFF332JOV 594939 ENCODE Processing Pipeline 9d4f96a2a04e052aa45a02e3702c33d5 https://www.encodeproject.org/files/ENCFF939TZS/@@download/ENCFF939TZS.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF516MDP bigBed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF939TZS 1241908 ENCODE Processing Pipeline c5cbd883b9a734e9d33c646a37524702 https://www.encodeproject.org/files/ENCFF516MDP/@@download/ENCFF516MDP.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF278JRW bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 1315338945 ENCODE Processing Pipeline 98f381465547f867df11f8f74213aa71 https://www.encodeproject.org/files/ENCFF278JRW/@@download/ENCFF278JRW.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF236WSQ bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 6119134 ENCODE Processing Pipeline e972082cf7848136ad3c323f39055b78 https://www.encodeproject.org/files/ENCFF236WSQ/@@download/ENCFF236WSQ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF572AQI bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF643CGH 1765664463 ENCODE Processing Pipeline 744db70b2321e2a6161b6f3defd8ea1c https://www.encodeproject.org/files/ENCFF572AQI/@@download/ENCFF572AQI.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF183GKO bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF643CGH 1476671553 ENCODE Processing Pipeline c7a7ab776d57cd142326961979d73731 https://www.encodeproject.org/files/ENCFF183GKO/@@download/ENCFF183GKO.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF465ZPQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF643CGH 1151670716 ENCODE Processing Pipeline b1ed6d3b88ae5bd9fc09e70c56fc1a6f https://www.encodeproject.org/files/ENCFF465ZPQ/@@download/ENCFF465ZPQ.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF009WRQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF643CGH 1050161016 ENCODE Processing Pipeline 98efca49ee786c5f38b4b45f4f9716aa https://www.encodeproject.org/files/ENCFF009WRQ/@@download/ENCFF009WRQ.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF956GRK bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 748069996 ENCODE Processing Pipeline 1dd39bfdedba61fba4359f8513d3fa6f https://www.encodeproject.org/files/ENCFF956GRK/@@download/ENCFF956GRK.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF875BIJ bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 715737259 ENCODE Processing Pipeline 1c2b69e61f53dfdcf9d508ee8481d9b2 https://www.encodeproject.org/files/ENCFF875BIJ/@@download/ENCFF875BIJ.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF843GAN bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 1193664818 ENCODE Processing Pipeline e3a5f006f533b3f7d29362e8eed2199f https://www.encodeproject.org/files/ENCFF843GAN/@@download/ENCFF843GAN.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF667CYC bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 609421846 ENCODE Processing Pipeline a1581a46624eab27496fdb69c0bf5c7a https://www.encodeproject.org/files/ENCFF667CYC/@@download/ENCFF667CYC.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF698JDC bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 587572536 ENCODE Processing Pipeline a6ef54172f1e49843bf9969c73b1ee5c https://www.encodeproject.org/files/ENCFF698JDC/@@download/ENCFF698JDC.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF103OHX bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 1346129858 ENCODE Processing Pipeline e518b760ece2dc56781c97948fd9d14f https://www.encodeproject.org/files/ENCFF103OHX/@@download/ENCFF103OHX.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF115HCB bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 5814715 ENCODE Processing Pipeline 7b7a0e2a554d7a6a0a2261d08595b38a https://www.encodeproject.org/files/ENCFF115HCB/@@download/ENCFF115HCB.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF585LFG bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 5939451 ENCODE Processing Pipeline 1ec1151ca0bf5d10fc35d8ebcbab1c66 https://www.encodeproject.org/files/ENCFF585LFG/@@download/ENCFF585LFG.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF646YJW bed narrowPeak peaks and background as input for IDR ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 6919654 ENCODE Processing Pipeline 5add5e3a7b2e26dff90242ad7e5fcb42 https://www.encodeproject.org/files/ENCFF646YJW/@@download/ENCFF646YJW.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF850EJW bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF115HCB 13599075 ENCODE Processing Pipeline 0f1f6dd901fdfcddbbe926f5c0995412 https://www.encodeproject.org/files/ENCFF850EJW/@@download/ENCFF850EJW.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF113UYL bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF585LFG 13523381 ENCODE Processing Pipeline cbc09ffba8204ebde58def3bdc7dfe3e https://www.encodeproject.org/files/ENCFF113UYL/@@download/ENCFF113UYL.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF563ZIK bigBed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF935SBO 1190633 ENCODE Processing Pipeline 14a9676ceb8d816b0fcc262068ace45d https://www.encodeproject.org/files/ENCFF563ZIK/@@download/ENCFF563ZIK.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF008RIO bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF646YJW 13724077 ENCODE Processing Pipeline 086f259266b0987ec2175cc3caffc149 https://www.encodeproject.org/files/ENCFF008RIO/@@download/ENCFF008RIO.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF935SBO bed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115HCB, ENCFF419RSJ, ENCFF585LFG, ENCFF646YJW 563905 ENCODE Processing Pipeline 9df854f466cd9ea7800dc670ef4bd312 https://www.encodeproject.org/files/ENCFF935SBO/@@download/ENCFF935SBO.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF478XNA bed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115HCB, ENCFF419RSJ, ENCFF585LFG, ENCFF646YJW 613896 ENCODE Processing Pipeline 37798933b9716f7e18da22a18a547aea https://www.encodeproject.org/files/ENCFF478XNA/@@download/ENCFF478XNA.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF141XLD bigBed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF478XNA 1269379 ENCODE Processing Pipeline 5800fe22a92b70e77416c652da408210 https://www.encodeproject.org/files/ENCFF141XLD/@@download/ENCFF141XLD.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF000OHP bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OIB 479060918 Richard Myers, HAIB aeafdeca34afeffba7970d1746437b81 https://www.encodeproject.org/files/ENCFF000OHP/@@download/ENCFF000OHP.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OHQ bigBed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZS 164881 Richard Myers, HAIB addc255cb05c9587d8f63723001a1543 https://www.encodeproject.org/files/ENCFF000OHQ/@@download/ENCFF000OHQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OHR bigBed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZT 475943 Richard Myers, HAIB 00d50fcdff20f233f40e478a1772ee7e https://www.encodeproject.org/files/ENCFF000OHR/@@download/ENCFF000OHR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OHS bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OIE 741625516 Richard Myers, HAIB 41936268d35e86c7edb054d88542c8ba https://www.encodeproject.org/files/ENCFF000OHS/@@download/ENCFF000OHS.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OHT bigWig raw signal ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 6672649 Richard Myers, HAIB 4ee644a2426b5ae4c37767e81a3c825c https://www.encodeproject.org/files/ENCFF000OHT/@@download/ENCFF000OHT.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OHU bigWig raw signal ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 20000956 Richard Myers, HAIB 1e5f5ade2f0529d8f72298f5d628f582 https://www.encodeproject.org/files/ENCFF000OHU/@@download/ENCFF000OHU.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OIB fastq reads ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 571352763 Richard Myers, HAIB 5dc738136b4ecc6ce3db30c63a8f987b https://www.encodeproject.org/files/ENCFF000OIB/@@download/ENCFF000OIB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF000OIE fastq reads ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 782209934 Richard Myers, HAIB 1bba39d4458baccdb45aa7ecf7bea311 https://www.encodeproject.org/files/ENCFF000OIE/@@download/ENCFF000OIE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF001TZS bed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 64292 Richard Myers, HAIB bde546f3725cdeb643ced0ea1d1c4fb5 https://www.encodeproject.org/files/ENCFF001TZS/@@download/ENCFF001TZS.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF001TZT bed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 269459 Richard Myers, HAIB b6c9a338395cfb186dda4f6c240ab5fd https://www.encodeproject.org/files/ENCFF001TZT/@@download/ENCFF001TZT.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF002CIE bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 96309 ENCODE Consortium Analysis Working Group 8f01b8a623b959caa7f7e25876808635 https://www.encodeproject.org/files/ENCFF002CIE/@@download/ENCFF002CIE.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF961WXK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIE 247605 ENCODE Consortium f3ea68cd797ea2633b5bd889341e494d https://www.encodeproject.org/files/ENCFF961WXK/@@download/ENCFF961WXK.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF039NYP bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF643CGH 677582740 ENCODE Processing Pipeline d3d9af71c2c46f2f96a4673184c9837b https://www.encodeproject.org/files/ENCFF039NYP/@@download/ENCFF039NYP.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF272BAG bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF643CGH 931234395 ENCODE Processing Pipeline 1e851ced9b5f21f5ea211fc0e4a09689 https://www.encodeproject.org/files/ENCFF272BAG/@@download/ENCFF272BAG.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF425FSK bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF643CGH 210995610 ENCODE Processing Pipeline 31e609780d8b4c2d7a456e1d5818a461 https://www.encodeproject.org/files/ENCFF425FSK/@@download/ENCFF425FSK.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF582LPW bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF643CGH 295221415 ENCODE Processing Pipeline 8d408f44ec95c35ee6e7edf8df7fa6a3 https://www.encodeproject.org/files/ENCFF582LPW/@@download/ENCFF582LPW.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF390ZIU bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF807MUK 676248749 ENCODE Processing Pipeline a3495417896b5896afc3219580c61066 https://www.encodeproject.org/files/ENCFF390ZIU/@@download/ENCFF390ZIU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF287GUR bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF807MUK 209093780 ENCODE Processing Pipeline d6fb4df0de636dfbac8058a69765e455 https://www.encodeproject.org/files/ENCFF287GUR/@@download/ENCFF287GUR.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF843JHA bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF807MUK 931165044 ENCODE Processing Pipeline 3fb714c8977bfda02658acc43f80b84b https://www.encodeproject.org/files/ENCFF843JHA/@@download/ENCFF843JHA.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF013JXB bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF807MUK 292034579 ENCODE Processing Pipeline 537f61b5912a744a8afca0b6239fdd0e https://www.encodeproject.org/files/ENCFF013JXB/@@download/ENCFF013JXB.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF727SXD bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 386676570 ENCODE Processing Pipeline d82bea85edcea33ef3abd4bd9f84b820 https://www.encodeproject.org/files/ENCFF727SXD/@@download/ENCFF727SXD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF589JAE bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 131823374 ENCODE Processing Pipeline b42c16a4c1ac1bb8d132682cfbd49d13 https://www.encodeproject.org/files/ENCFF589JAE/@@download/ENCFF589JAE.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF382FYC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF204LCG 297434 ENCODE Processing Pipeline a37874c46f7df9c7789ed731a5a413a4 https://www.encodeproject.org/files/ENCFF382FYC/@@download/ENCFF382FYC.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF315YFI bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 385923963 ENCODE Processing Pipeline 42c7444a25a295230a72758db81ddf6f https://www.encodeproject.org/files/ENCFF315YFI/@@download/ENCFF315YFI.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF292CDL bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 277128284 ENCODE Processing Pipeline 37b1e1dfab51e57ca643534393c3873a https://www.encodeproject.org/files/ENCFF292CDL/@@download/ENCFF292CDL.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF264KYF bed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MSV, ENCFF575AYZ, ENCFF756DWW 73920 ENCODE Processing Pipeline 20d3c705e3876667241b8fcf18ed4d4c https://www.encodeproject.org/files/ENCFF264KYF/@@download/ENCFF264KYF.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF558ZRB bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 413206044 ENCODE Processing Pipeline 0844e5dd5a44fbacac842e9b48250962 https://www.encodeproject.org/files/ENCFF558ZRB/@@download/ENCFF558ZRB.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF290ZCR bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 177228118 ENCODE Processing Pipeline 23a3890bb7adac1ab73ab6fbaf97cb96 https://www.encodeproject.org/files/ENCFF290ZCR/@@download/ENCFF290ZCR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF500MSV bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 4300254 ENCODE Processing Pipeline d3c92dda4b9d0ceb000f221d96147c96 https://www.encodeproject.org/files/ENCFF500MSV/@@download/ENCFF500MSV.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF950JGB bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF756DWW 10585475 ENCODE Processing Pipeline 12d6a6a54994eef88ec6bfdbdb5f26c0 https://www.encodeproject.org/files/ENCFF950JGB/@@download/ENCFF950JGB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF204LCG bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MSV, ENCFF575AYZ, ENCFF756DWW 128551 ENCODE Processing Pipeline 2d4f6f01796a7391c0c2b82e725c8f45 https://www.encodeproject.org/files/ENCFF204LCG/@@download/ENCFF204LCG.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF575AYZ bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 1637706 ENCODE Processing Pipeline 5325688cdef02e397e3f0892bc20cf0e https://www.encodeproject.org/files/ENCFF575AYZ/@@download/ENCFF575AYZ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF785XKO bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF575AYZ 3654565 ENCODE Processing Pipeline ca277861d1cc4ade5c66d5748d92c147 https://www.encodeproject.org/files/ENCFF785XKO/@@download/ENCFF785XKO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF212GWZ bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF500MSV 9822845 ENCODE Processing Pipeline 60f68146a59844d03aae018ec4c357bb https://www.encodeproject.org/files/ENCFF212GWZ/@@download/ENCFF212GWZ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF401FYN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF264KYF 174982 ENCODE Processing Pipeline e63c294a0e1a169b4a96bcd5828468ec https://www.encodeproject.org/files/ENCFF401FYN/@@download/ENCFF401FYN.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF756DWW bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 4812746 ENCODE Processing Pipeline ee6327cf5e29f4cd7d4cd779e3d781fc https://www.encodeproject.org/files/ENCFF756DWW/@@download/ENCFF756DWW.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF413OIV bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 131468412 ENCODE Processing Pipeline 0a74c9773954550d9a4a955145c68ca1 https://www.encodeproject.org/files/ENCFF413OIV/@@download/ENCFF413OIV.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF167NPM bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 276468858 ENCODE Processing Pipeline a752c5979a0bca0d44eac5fbd1b24b4e https://www.encodeproject.org/files/ENCFF167NPM/@@download/ENCFF167NPM.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF704LJZ bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 373717927 ENCODE Processing Pipeline 3dfbed70b031cc864e60e661ad675e2c https://www.encodeproject.org/files/ENCFF704LJZ/@@download/ENCFF704LJZ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF630HNB bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 478581984 ENCODE Processing Pipeline 90f291ae97fc286157aae7d3dd02c4c3 https://www.encodeproject.org/files/ENCFF630HNB/@@download/ENCFF630HNB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF854TVA bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 1545002 ENCODE Processing Pipeline 05c2785006b632a687acc835696a4ad6 https://www.encodeproject.org/files/ENCFF854TVA/@@download/ENCFF854TVA.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF267NGA bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF723OVS 10627848 ENCODE Processing Pipeline 15f3bb8d21f96467af162d9dd05a04ac https://www.encodeproject.org/files/ENCFF267NGA/@@download/ENCFF267NGA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF479ORW bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 175798796 ENCODE Processing Pipeline 97f178ad2c393d67f96725db6da281d0 https://www.encodeproject.org/files/ENCFF479ORW/@@download/ENCFF479ORW.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF732PLA bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF066EAT 9965765 ENCODE Processing Pipeline 11f2f526d26a9af510499ad59fb9ef46 https://www.encodeproject.org/files/ENCFF732PLA/@@download/ENCFF732PLA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF621OAS bed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066EAT, ENCFF723OVS, ENCFF854TVA 68859 ENCODE Processing Pipeline 32b885f01b0590cf385232aa1872e37e https://www.encodeproject.org/files/ENCFF621OAS/@@download/ENCFF621OAS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF997NGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066EAT, ENCFF723OVS, ENCFF854TVA 126477 ENCODE Processing Pipeline 30a9b5ffb47654a81a0933837011f2b4 https://www.encodeproject.org/files/ENCFF997NGJ/@@download/ENCFF997NGJ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF024PWA bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 351885792 ENCODE Processing Pipeline 6d9aff922c034976876db14d7c4e687b https://www.encodeproject.org/files/ENCFF024PWA/@@download/ENCFF024PWA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF807LKR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF621OAS 168771 ENCODE Processing Pipeline b926ce9f2fc108b8410760c3bbfc9f25 https://www.encodeproject.org/files/ENCFF807LKR/@@download/ENCFF807LKR.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF066EAT bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 4364605 ENCODE Processing Pipeline f57fb1ee83f2c3375f280090ea2961a2 https://www.encodeproject.org/files/ENCFF066EAT/@@download/ENCFF066EAT.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF723OVS bed narrowPeak peaks and background as input for IDR ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 4873933 ENCODE Processing Pipeline 4d1dfff14be89ebee2669a999ae0889d https://www.encodeproject.org/files/ENCFF723OVS/@@download/ENCFF723OVS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF731LCP bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF854TVA 2752019 ENCODE Processing Pipeline dcf981f7ee4a9e8ba6dd24b2fea76925 https://www.encodeproject.org/files/ENCFF731LCP/@@download/ENCFF731LCP.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF492JSO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF997NGJ 295349 ENCODE Processing Pipeline ddf74a8c6194a92340c2f3e2bbfb5740 https://www.encodeproject.org/files/ENCFF492JSO/@@download/ENCFF492JSO.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, borderline replicate concordance NTR biosample, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth extremely low read depth ENCFF587OVW fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF340SQP 3389939928 Michael Snyder, Stanford 174dbe84a997e3cf69a41fd80067c7ca SRA:SRR6213516 https://www.encodeproject.org/files/ENCFF587OVW/@@download/ENCFF587OVW.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF264WMA fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF155GMC 1895006839 Michael Snyder, Stanford 9940e67521ed46c80a5d2f1748f34668 SRA:SRR6213517 https://www.encodeproject.org/files/ENCFF264WMA/@@download/ENCFF264WMA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF155GMC fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF264WMA 2340139486 Michael Snyder, Stanford 4fcf45af80e1f3786aada82f5a2c26c8 SRA:SRR6213517 https://www.encodeproject.org/files/ENCFF155GMC/@@download/ENCFF155GMC.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF340SQP fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF587OVW 2841718954 Michael Snyder, Stanford 061b52b2c88751d3393a93b99bc06558 SRA:SRR6213516 https://www.encodeproject.org/files/ENCFF340SQP/@@download/ENCFF340SQP.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF790VVG bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF643CGH 4240381409 ENCODE Processing Pipeline 1efd3425f6b890d1a01d990f4854d4ce https://www.encodeproject.org/files/ENCFF790VVG/@@download/ENCFF790VVG.bam GRCh38 released mild to moderate bottlenecking ENCFF285ESK bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF807MUK 4237317609 ENCODE Processing Pipeline e5351e3f14688ae92bff72f1fdfe8bc1 https://www.encodeproject.org/files/ENCFF285ESK/@@download/ENCFF285ESK.bam hg19 released mild to moderate bottlenecking ENCFF145YKB bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF643CGH 5899874914 ENCODE Processing Pipeline 67bf5c2a1dec465480fd8b23b773f207 https://www.encodeproject.org/files/ENCFF145YKB/@@download/ENCFF145YKB.bam GRCh38 released mild to moderate bottlenecking ENCFF431YXJ bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF807MUK 5898109483 ENCODE Processing Pipeline 23e790c48d26d526a18de074a4b1ca1b https://www.encodeproject.org/files/ENCFF431YXJ/@@download/ENCFF431YXJ.bam hg19 released mild to moderate bottlenecking ENCFF819AJF bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF807MUK 3095087806 ENCODE Processing Pipeline 1a44be4cc2de1ff105c55e592d6cead8 https://www.encodeproject.org/files/ENCFF819AJF/@@download/ENCFF819AJF.bam hg19 released mild to moderate bottlenecking ENCFF282GMA bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF643CGH 3098965398 ENCODE Processing Pipeline f19cee6b5ddd4826c492163770be1328 https://www.encodeproject.org/files/ENCFF282GMA/@@download/ENCFF282GMA.bam GRCh38 released mild to moderate bottlenecking ENCFF342HIU bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF807MUK 3906480223 ENCODE Processing Pipeline 1cc83c1f8e693477806e4c860921f409 https://www.encodeproject.org/files/ENCFF342HIU/@@download/ENCFF342HIU.bam hg19 released mild to moderate bottlenecking ENCFF320FKI bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF643CGH 3911940769 ENCODE Processing Pipeline 3e71393b3e373dc338c70fe9223b9a0e https://www.encodeproject.org/files/ENCFF320FKI/@@download/ENCFF320FKI.bam GRCh38 released mild to moderate bottlenecking ENCFF766CJW bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 7212921 ENCODE Processing Pipeline e3c92398dd689523b2ea67f443a0b4ce https://www.encodeproject.org/files/ENCFF766CJW/@@download/ENCFF766CJW.bed.gz hg19 released mild to moderate bottlenecking ENCFF826QYL bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF878DLA 13405105 ENCODE Processing Pipeline 6359cedf291b4ec0aacd6129fdc365be https://www.encodeproject.org/files/ENCFF826QYL/@@download/ENCFF826QYL.bigBed hg19 released mild to moderate bottlenecking ENCFF946XRC bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 982500279 ENCODE Processing Pipeline 1ebf36eda527fc3f4f431c21496c8f3d https://www.encodeproject.org/files/ENCFF946XRC/@@download/ENCFF946XRC.bigWig hg19 released mild to moderate bottlenecking ENCFF878DLA bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 6779574 ENCODE Processing Pipeline 7234d3b4a0de8c0f2e2bf90b6035ae20 https://www.encodeproject.org/files/ENCFF878DLA/@@download/ENCFF878DLA.bed.gz hg19 released mild to moderate bottlenecking ENCFF241KMD bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 6464014 ENCODE Processing Pipeline 2faeb82f0ea30ae9a270f9d2fa11cfb2 https://www.encodeproject.org/files/ENCFF241KMD/@@download/ENCFF241KMD.bed.gz hg19 released mild to moderate bottlenecking ENCFF653AWK bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 2084543669 ENCODE Processing Pipeline 1a53846dbb7eb63ad9ce72d26d1e521d https://www.encodeproject.org/files/ENCFF653AWK/@@download/ENCFF653AWK.bigWig hg19 released mild to moderate bottlenecking ENCFF810CEL bed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF241KMD, ENCFF766CJW, ENCFF878DLA 755749 ENCODE Processing Pipeline 6f809f7b7c61d376d524f1789d35c3dd https://www.encodeproject.org/files/ENCFF810CEL/@@download/ENCFF810CEL.bed.gz hg19 released mild to moderate bottlenecking ENCFF095WDY bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 1042618718 ENCODE Processing Pipeline 968c44f263b577e0b1fc654f5f54eda6 https://www.encodeproject.org/files/ENCFF095WDY/@@download/ENCFF095WDY.bigWig hg19 released mild to moderate bottlenecking ENCFF411KYY bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF241KMD 13411899 ENCODE Processing Pipeline 89e233906bfa2276ac31fcc793ce4ed5 https://www.encodeproject.org/files/ENCFF411KYY/@@download/ENCFF411KYY.bigBed hg19 released mild to moderate bottlenecking ENCFF255HIR bed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF241KMD, ENCFF766CJW, ENCFF878DLA 617371 ENCODE Processing Pipeline ea6af5b6ecf486717609213382a32a01 https://www.encodeproject.org/files/ENCFF255HIR/@@download/ENCFF255HIR.bed.gz hg19 released mild to moderate bottlenecking ENCFF554LUB bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 1296545620 ENCODE Processing Pipeline b286d2cb9767ffd2a3694e0e1e697ae1 https://www.encodeproject.org/files/ENCFF554LUB/@@download/ENCFF554LUB.bigWig hg19 released mild to moderate bottlenecking ENCFF253KZC bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 1232340055 ENCODE Processing Pipeline a543001af08a7818ac21916ba720de3d https://www.encodeproject.org/files/ENCFF253KZC/@@download/ENCFF253KZC.bigWig hg19 released mild to moderate bottlenecking ENCFF123MOV bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 2122767080 ENCODE Processing Pipeline bdd069c035bdd55334f5865045aef632 https://www.encodeproject.org/files/ENCFF123MOV/@@download/ENCFF123MOV.bigWig hg19 released mild to moderate bottlenecking ENCFF377VLA bigBed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF255HIR 1203121 ENCODE Processing Pipeline f3cd4a803f2a2d2ec618baff623c205c https://www.encodeproject.org/files/ENCFF377VLA/@@download/ENCFF377VLA.bigBed hg19 released mild to moderate bottlenecking ENCFF495PUN bigBed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF810CEL 1739117 ENCODE Processing Pipeline 7ae23c5156406830eca6957f3bb64937 https://www.encodeproject.org/files/ENCFF495PUN/@@download/ENCFF495PUN.bigBed hg19 released mild to moderate bottlenecking ENCFF302QHN bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF766CJW 13407835 ENCODE Processing Pipeline b0f167af95cdf214d055f0fda7293add https://www.encodeproject.org/files/ENCFF302QHN/@@download/ENCFF302QHN.bigBed hg19 released mild to moderate bottlenecking ENCFF801BDJ bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 6755794 ENCODE Processing Pipeline 84d6cf153604240f4953e081689aedc2 https://www.encodeproject.org/files/ENCFF801BDJ/@@download/ENCFF801BDJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF283XOA bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF801BDJ 13389237 ENCODE Processing Pipeline 380b85855ce1ca93c3050069df4b8856 https://www.encodeproject.org/files/ENCFF283XOA/@@download/ENCFF283XOA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF871LEW bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 1082447093 ENCODE Processing Pipeline adebe8f720af8d628815c78dd519d225 https://www.encodeproject.org/files/ENCFF871LEW/@@download/ENCFF871LEW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF652WYR bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 2090462181 ENCODE Processing Pipeline e1958b2f016e0fcc9cac6d090678e062 https://www.encodeproject.org/files/ENCFF652WYR/@@download/ENCFF652WYR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF505WJT bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 7251460 ENCODE Processing Pipeline 9573cdb76e94026b1911a53f2a1ec4db https://www.encodeproject.org/files/ENCFF505WJT/@@download/ENCFF505WJT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF696BUG bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF608JBJ 13504146 ENCODE Processing Pipeline 8ad0fc4efa9015f4c7e22026edb1008e https://www.encodeproject.org/files/ENCFF696BUG/@@download/ENCFF696BUG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF297ICH bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF505WJT 13457441 ENCODE Processing Pipeline 4cbab36636fcd9270e83a6538a24f74a https://www.encodeproject.org/files/ENCFF297ICH/@@download/ENCFF297ICH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF449PTH bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 1131098769 ENCODE Processing Pipeline dc3706fbb56e40c2552a14ab649970d4 https://www.encodeproject.org/files/ENCFF449PTH/@@download/ENCFF449PTH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF105FEU bigBed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF008DRS 1218611 ENCODE Processing Pipeline 74c821e2f7efdced7ecdeff7b5eeeba4 https://www.encodeproject.org/files/ENCFF105FEU/@@download/ENCFF105FEU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF751ZVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF531KOV 1769024 ENCODE Processing Pipeline abb6ee59b0c5de36c43a23ce2550978f https://www.encodeproject.org/files/ENCFF751ZVQ/@@download/ENCFF751ZVQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF592LFH bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 1041553684 ENCODE Processing Pipeline 4a876f826ef73168016ed376d3ed1289 https://www.encodeproject.org/files/ENCFF592LFH/@@download/ENCFF592LFH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF608JBJ bed narrowPeak peaks and background as input for IDR ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 6533951 ENCODE Processing Pipeline 9fae5f643b76bcd891053d49fd98e799 https://www.encodeproject.org/files/ENCFF608JBJ/@@download/ENCFF608JBJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF520UZK bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 1248209886 ENCODE Processing Pipeline 6a7fb480e18c6aef659cf7c84730d216 https://www.encodeproject.org/files/ENCFF520UZK/@@download/ENCFF520UZK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF557EJS bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 2075949052 ENCODE Processing Pipeline 86784076b2e1939cd249855ee8ec0bd3 https://www.encodeproject.org/files/ENCFF557EJS/@@download/ENCFF557EJS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF008DRS bed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF505WJT, ENCFF608JBJ, ENCFF801BDJ 628939 ENCODE Processing Pipeline 4d73da6aaf53801fc2bb3ad7c8f8533c https://www.encodeproject.org/files/ENCFF008DRS/@@download/ENCFF008DRS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF531KOV bed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF505WJT, ENCFF608JBJ, ENCFF801BDJ 775327 ENCODE Processing Pipeline ba5f88208427b6499d1bdacfed46b815 https://www.encodeproject.org/files/ENCFF531KOV/@@download/ENCFF531KOV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF000OEW bigBed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZA 147213 Richard Myers, HAIB bcf3aa422c5814c731b9b557509e5560 https://www.encodeproject.org/files/ENCFF000OEW/@@download/ENCFF000OEW.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEX bigBed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZB 142887 Richard Myers, HAIB 53fcfe92ca87c781d38b550a8965508a https://www.encodeproject.org/files/ENCFF000OEX/@@download/ENCFF000OEX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEY bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OFK 1037265261 Richard Myers, HAIB 2f9e9cf357db38a89a9b9792d1d42c10 https://www.encodeproject.org/files/ENCFF000OEY/@@download/ENCFF000OEY.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEZ bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OFM 1110983058 Richard Myers, HAIB cfa9f1725478c7b5d11c7dd6c83730f5 https://www.encodeproject.org/files/ENCFF000OEZ/@@download/ENCFF000OEZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OFA bigWig raw signal ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 37539587 Richard Myers, HAIB c67310cd43e0b50fbc3c011c5c598a59 https://www.encodeproject.org/files/ENCFF000OFA/@@download/ENCFF000OFA.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OFB bigWig raw signal ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 38985726 Richard Myers, HAIB b78a1a3a2e838c58c3edc6e24a465944 https://www.encodeproject.org/files/ENCFF000OFB/@@download/ENCFF000OFB.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OFK fastq reads ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1737543499 Richard Myers, HAIB f4201e5af47210bd109495e6b9bc6320 https://www.encodeproject.org/files/ENCFF000OFK/@@download/ENCFF000OFK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF000OFM fastq reads ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 2380957280 Richard Myers, HAIB 604cb1d648c1be31128954f60cb467e8 https://www.encodeproject.org/files/ENCFF000OFM/@@download/ENCFF000OFM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample ENCFF001TZA bed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 58183 Richard Myers, HAIB abddb0f0d7cd46adb9fbc08b4d31f8d1 https://www.encodeproject.org/files/ENCFF001TZA/@@download/ENCFF001TZA.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TZB bed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 65764 Richard Myers, HAIB 1e842c2f75c0452b3c5193e857ad04b1 https://www.encodeproject.org/files/ENCFF001TZB/@@download/ENCFF001TZB.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CHW bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 184095 ENCODE Consortium Analysis Working Group 51328a96dd2d0fa59860316ae77b9b4b https://www.encodeproject.org/files/ENCFF002CHW/@@download/ENCFF002CHW.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF591FNK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHW 426769 ENCODE Consortium 1d105f13e89076333f94baa5a949657d https://www.encodeproject.org/files/ENCFF591FNK/@@download/ENCFF591FNK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF497WHG bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF807MUK 1943676930 ENCODE Processing Pipeline 66b2f1179b70c8e1948899db29476c66 https://www.encodeproject.org/files/ENCFF497WHG/@@download/ENCFF497WHG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF210YHD bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF807MUK 626297927 ENCODE Processing Pipeline b32491c135796fb886d2bafb7b375020 https://www.encodeproject.org/files/ENCFF210YHD/@@download/ENCFF210YHD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF263NOT bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF643CGH 630867459 ENCODE Processing Pipeline d11c04ad0ebf411ae606a5f1dff97188 https://www.encodeproject.org/files/ENCFF263NOT/@@download/ENCFF263NOT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF323SHI bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF643CGH 1950206485 ENCODE Processing Pipeline be3087a894738abea84e8c4cf439d706 https://www.encodeproject.org/files/ENCFF323SHI/@@download/ENCFF323SHI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF731ZNW bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF643CGH 693781453 ENCODE Processing Pipeline 8af589ba02fdb061cd605c19ae3330d5 https://www.encodeproject.org/files/ENCFF731ZNW/@@download/ENCFF731ZNW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF187ZGJ bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF807MUK 690261890 ENCODE Processing Pipeline 176e0fbfda4e10e02d4d148ab203fcfe https://www.encodeproject.org/files/ENCFF187ZGJ/@@download/ENCFF187ZGJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF387WBW bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF643CGH 2516275564 ENCODE Processing Pipeline 22b7315335add7500a5af22cea098be4 https://www.encodeproject.org/files/ENCFF387WBW/@@download/ENCFF387WBW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF351NJK bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF807MUK 2509265522 ENCODE Processing Pipeline f9b40db10c34ab533b2cd469db728728 https://www.encodeproject.org/files/ENCFF351NJK/@@download/ENCFF351NJK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF552IHW bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 583853353 ENCODE Processing Pipeline efcff000b83e33480fdc5aaeb6fb21c1 https://www.encodeproject.org/files/ENCFF552IHW/@@download/ENCFF552IHW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF919XDC bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 539652592 ENCODE Processing Pipeline c54a57d4097dcf5e0d770635a442b133 https://www.encodeproject.org/files/ENCFF919XDC/@@download/ENCFF919XDC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF142EZZ bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 516542078 ENCODE Processing Pipeline 7c9c8207d4708fe0b7d5de1fc38806b2 https://www.encodeproject.org/files/ENCFF142EZZ/@@download/ENCFF142EZZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF889FHJ bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 527520958 ENCODE Processing Pipeline 8a6fe266bb4de9f4504a64dc4bfb147b https://www.encodeproject.org/files/ENCFF889FHJ/@@download/ENCFF889FHJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF901YGR bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 825163141 ENCODE Processing Pipeline b7ecf10ae9a26c2807314abdf3e9d099 https://www.encodeproject.org/files/ENCFF901YGR/@@download/ENCFF901YGR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF547MAP bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 395649923 ENCODE Processing Pipeline ec73e9c5b6d596508b3f3118e558772e https://www.encodeproject.org/files/ENCFF547MAP/@@download/ENCFF547MAP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF108IRL bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 662079610 ENCODE Processing Pipeline ec531e76ca6989c43e479f3a4955cb1d https://www.encodeproject.org/files/ENCFF108IRL/@@download/ENCFF108IRL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF519SOT bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 390070106 ENCODE Processing Pipeline 7647d58f1b164ad1e3220703f6d3df10 https://www.encodeproject.org/files/ENCFF519SOT/@@download/ENCFF519SOT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF685JIC bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 396454967 ENCODE Processing Pipeline f259cd4fc6dbaa17be707d0a284567ed https://www.encodeproject.org/files/ENCFF685JIC/@@download/ENCFF685JIC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF839SCO bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 654593904 ENCODE Processing Pipeline e7287fe847a679093313802aa8c8f440 https://www.encodeproject.org/files/ENCFF839SCO/@@download/ENCFF839SCO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF670YYF bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 392175983 ENCODE Processing Pipeline a451e424cc2a9c6d48bf6ec80618070c https://www.encodeproject.org/files/ENCFF670YYF/@@download/ENCFF670YYF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF128VPM bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF143LWQ 11200313 ENCODE Processing Pipeline 6240b5214d1ecc95f1f6c5be1851aed6 https://www.encodeproject.org/files/ENCFF128VPM/@@download/ENCFF128VPM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF325QYD bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 4958331 ENCODE Processing Pipeline 8c709c81bb435b3d2c1544b35aef59c2 https://www.encodeproject.org/files/ENCFF325QYD/@@download/ENCFF325QYD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF143LWQ bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 5314045 ENCODE Processing Pipeline a86ea2313a080cd0f567db48386cf1b4 https://www.encodeproject.org/files/ENCFF143LWQ/@@download/ENCFF143LWQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF801IPK bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 6091662 ENCODE Processing Pipeline 56634b7b1e07519b5a28a84100c88877 https://www.encodeproject.org/files/ENCFF801IPK/@@download/ENCFF801IPK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF077HTK bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QYD 11030487 ENCODE Processing Pipeline 76f06b791cf5dd45ab20e71976c95041 https://www.encodeproject.org/files/ENCFF077HTK/@@download/ENCFF077HTK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF662ICX bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 641493499 ENCODE Processing Pipeline 5b1bcc603b0ced254bdd45f366bf0c5a https://www.encodeproject.org/files/ENCFF662ICX/@@download/ENCFF662ICX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF709SWY bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF801IPK 11324935 ENCODE Processing Pipeline 433473ad8300ff43704f3f5ad473fe02 https://www.encodeproject.org/files/ENCFF709SWY/@@download/ENCFF709SWY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF012LEV bed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF143LWQ, ENCFF325QYD, ENCFF419RSJ, ENCFF801IPK 51326 ENCODE Processing Pipeline 5aa2f8e7b0a545c0772cc4596ae323f1 https://www.encodeproject.org/files/ENCFF012LEV/@@download/ENCFF012LEV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF883EFM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012LEV 148608 ENCODE Processing Pipeline 7e7f027d73ede4ac6b03e685bd1662ed https://www.encodeproject.org/files/ENCFF883EFM/@@download/ENCFF883EFM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF339GTZ bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 6100916 ENCODE Processing Pipeline 3cab67dfcb47113a788fc3bbbf2b37ac https://www.encodeproject.org/files/ENCFF339GTZ/@@download/ENCFF339GTZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF182IFE bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF143LWQ, ENCFF325QYD, ENCFF419RSJ, ENCFF801IPK 55500 ENCODE Processing Pipeline ff130149520ea9b718f987e52d3e4370 https://www.encodeproject.org/files/ENCFF182IFE/@@download/ENCFF182IFE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF227UBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF182IFE 155358 ENCODE Processing Pipeline 3e7aa81bbf6162d90057877a136ec3c9 https://www.encodeproject.org/files/ENCFF227UBQ/@@download/ENCFF227UBQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF972PDN bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 4984004 ENCODE Processing Pipeline 96eceb07f8556ee2b0b3adf000ed21c5 https://www.encodeproject.org/files/ENCFF972PDN/@@download/ENCFF972PDN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF613VCR bed narrowPeak peaks and background as input for IDR ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 5316251 ENCODE Processing Pipeline 633f1f5876b47332344eb8962527dba3 https://www.encodeproject.org/files/ENCFF613VCR/@@download/ENCFF613VCR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF194GQP bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF613VCR 11200410 ENCODE Processing Pipeline 40de2ff0f0af3b89391da49e23ee081a https://www.encodeproject.org/files/ENCFF194GQP/@@download/ENCFF194GQP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF320OXU bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339GTZ 11299403 ENCODE Processing Pipeline 82c6485850e5eb88fbf020d7abfedff5 https://www.encodeproject.org/files/ENCFF320OXU/@@download/ENCFF320OXU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF721BKY bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF972PDN 11031195 ENCODE Processing Pipeline e3d20c5c47483044437177d42c6fa11b https://www.encodeproject.org/files/ENCFF721BKY/@@download/ENCFF721BKY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF593FGJ bed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF339GTZ, ENCFF613VCR, ENCFF972PDN 51032 ENCODE Processing Pipeline e9899aee5e2765c75a27bd2c8db8cdce https://www.encodeproject.org/files/ENCFF593FGJ/@@download/ENCFF593FGJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF320KBS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593FGJ 148301 ENCODE Processing Pipeline bd72b03b25d8706e97a1d89305e4f0d4 https://www.encodeproject.org/files/ENCFF320KBS/@@download/ENCFF320KBS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF199WGD bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF339GTZ, ENCFF613VCR, ENCFF972PDN 55949 ENCODE Processing Pipeline edc30706d0e012b4c150f744cbd30f3f https://www.encodeproject.org/files/ENCFF199WGD/@@download/ENCFF199WGD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF572HLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199WGD 155407 ENCODE Processing Pipeline 735bc1bc4a46256f6fbddf05f742990c https://www.encodeproject.org/files/ENCFF572HLP/@@download/ENCFF572HLP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000ODU bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OEH 731656869 Richard Myers, HAIB c8e9cde1ad0176fc164385ad1f189a6e https://www.encodeproject.org/files/ENCFF000ODU/@@download/ENCFF000ODU.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000ODW bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEJ 590891250 Richard Myers, HAIB ef0fe52eaccad234403083918b1e970b https://www.encodeproject.org/files/ENCFF000ODW/@@download/ENCFF000ODW.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000ODX bigBed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYT 203320 Richard Myers, HAIB 2fb9fc9ed05d85b84ce59e8bd0bf6649 https://www.encodeproject.org/files/ENCFF000ODX/@@download/ENCFF000ODX.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000ODY bigBed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYV 76081 Richard Myers, HAIB 8681f74ddea11145b668ac7a954d489d https://www.encodeproject.org/files/ENCFF000ODY/@@download/ENCFF000ODY.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000OEA bigWig raw signal ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 27590744 Richard Myers, HAIB fb63b110521d63bfd5d23ca17b70d741 https://www.encodeproject.org/files/ENCFF000OEA/@@download/ENCFF000OEA.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000OEC bigWig raw signal ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 18467995 Richard Myers, HAIB a506c6e6c85db69119b0cf24ecd2ab15 https://www.encodeproject.org/files/ENCFF000OEC/@@download/ENCFF000OEC.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000OEH fastq reads ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1038753064 Richard Myers, HAIB a7d93cad13a08af91bc808ef76d06aed https://www.encodeproject.org/files/ENCFF000OEH/@@download/ENCFF000OEH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF000OEJ fastq reads ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 900997112 Richard Myers, HAIB f89d01328c034ae94344b564df407a91 https://www.encodeproject.org/files/ENCFF000OEJ/@@download/ENCFF000OEJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF001TYT bed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 83093 Richard Myers, HAIB 312b4cb00e08360a9fb4a8e4474e216e https://www.encodeproject.org/files/ENCFF001TYT/@@download/ENCFF001TYT.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF001TYV bed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 18042 Richard Myers, HAIB ad01485e217f09133561735c2aee4cc9 https://www.encodeproject.org/files/ENCFF001TYV/@@download/ENCFF001TYV.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF002CHT bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 33163 ENCODE Consortium Analysis Working Group 1fcda1bc2495dce47bb851030913fa90 https://www.encodeproject.org/files/ENCFF002CHT/@@download/ENCFF002CHT.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF213FVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHT 101374 ENCODE Consortium 1b1e634afa2111c79c48303237f90a8b https://www.encodeproject.org/files/ENCFF213FVH/@@download/ENCFF213FVH.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF125QGK bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF643CGH 1190051350 ENCODE Processing Pipeline fc6cb7cc9c23ce718333c17119d16500 https://www.encodeproject.org/files/ENCFF125QGK/@@download/ENCFF125QGK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF924KUA bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF643CGH 312666675 ENCODE Processing Pipeline becee3cd8be1c51e6cddb6b4ff03b0f3 https://www.encodeproject.org/files/ENCFF924KUA/@@download/ENCFF924KUA.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF292CKM bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF643CGH 1050720661 ENCODE Processing Pipeline e041817f4b62892a7be4015dab85ea27 https://www.encodeproject.org/files/ENCFF292CKM/@@download/ENCFF292CKM.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF713PKK bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF643CGH 293552376 ENCODE Processing Pipeline 816e373f120f913efa545f9fc345e6c1 https://www.encodeproject.org/files/ENCFF713PKK/@@download/ENCFF713PKK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF336YAA bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF807MUK 1188110824 ENCODE Processing Pipeline ff290c872a6786fd64cea99983c7245b https://www.encodeproject.org/files/ENCFF336YAA/@@download/ENCFF336YAA.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF532MNB bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF807MUK 1049410986 ENCODE Processing Pipeline b993e51b9bf2ce85ffae395baf830a01 https://www.encodeproject.org/files/ENCFF532MNB/@@download/ENCFF532MNB.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF401FGJ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF807MUK 289075969 ENCODE Processing Pipeline 02004b0f9bffa2df63ba58d145018e79 https://www.encodeproject.org/files/ENCFF401FGJ/@@download/ENCFF401FGJ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF488TFQ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF807MUK 308022329 ENCODE Processing Pipeline 4259f9c32e7932259982651675d80c06 https://www.encodeproject.org/files/ENCFF488TFQ/@@download/ENCFF488TFQ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF453VRD bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 383115919 ENCODE Processing Pipeline aa6945c6310dcd7be0848cebd55e1a9c https://www.encodeproject.org/files/ENCFF453VRD/@@download/ENCFF453VRD.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF637JVP bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 382375516 ENCODE Processing Pipeline 9537e693d999e82fa47485933e7a87a8 https://www.encodeproject.org/files/ENCFF637JVP/@@download/ENCFF637JVP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF856MZL bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 699866703 ENCODE Processing Pipeline 2a880180aaaccb03ac890aabdd6c83c7 https://www.encodeproject.org/files/ENCFF856MZL/@@download/ENCFF856MZL.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF560LZO bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 169438222 ENCODE Processing Pipeline d8bbaec105f77463a8154f67089dcb34 https://www.encodeproject.org/files/ENCFF560LZO/@@download/ENCFF560LZO.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF337ECP bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 180214423 ENCODE Processing Pipeline 8b5ffff7e965acadd78e099fb38c6994 https://www.encodeproject.org/files/ENCFF337ECP/@@download/ENCFF337ECP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF837EBB bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 3557393 ENCODE Processing Pipeline 8984c72f1a10bc30be40b5830308c6e2 https://www.encodeproject.org/files/ENCFF837EBB/@@download/ENCFF837EBB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF090IZQ bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 3463610 ENCODE Processing Pipeline 602a31e3a8a636578c49071c3ac81d9c https://www.encodeproject.org/files/ENCFF090IZQ/@@download/ENCFF090IZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF974EMV bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF837EBB 7570734 ENCODE Processing Pipeline 38ef46bfcc435313fb2079a66afd3678 https://www.encodeproject.org/files/ENCFF974EMV/@@download/ENCFF974EMV.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF951RXW bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 433991399 ENCODE Processing Pipeline da5e95a00581576bf3f7e5b3121ebb4b https://www.encodeproject.org/files/ENCFF951RXW/@@download/ENCFF951RXW.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF604SNB bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF090IZQ 7545040 ENCODE Processing Pipeline d68f40ffb02584ca0860335e2fd9f59a https://www.encodeproject.org/files/ENCFF604SNB/@@download/ENCFF604SNB.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF727CUX bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 4209212 ENCODE Processing Pipeline b290cfa31327f0070399db84c0d37770 https://www.encodeproject.org/files/ENCFF727CUX/@@download/ENCFF727CUX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF051NHQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF928YOZ 87728 ENCODE Processing Pipeline 0ee5cf546e322916edea4684fc8c6437 https://www.encodeproject.org/files/ENCFF051NHQ/@@download/ENCFF051NHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF782XCD bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF727CUX 10746620 ENCODE Processing Pipeline b13d43118479e08cd74095a2e634c976 https://www.encodeproject.org/files/ENCFF782XCD/@@download/ENCFF782XCD.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF928YOZ bed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF090IZQ, ENCFF419RSJ, ENCFF727CUX, ENCFF837EBB 25073 ENCODE Processing Pipeline 0c76d111b374f18a9349a1cbbd913dc6 https://www.encodeproject.org/files/ENCFF928YOZ/@@download/ENCFF928YOZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF044RBH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313BDA 101193 ENCODE Processing Pipeline eee7685e2b5ec2123c12f188653eb671 https://www.encodeproject.org/files/ENCFF044RBH/@@download/ENCFF044RBH.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF313BDA bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF090IZQ, ENCFF419RSJ, ENCFF727CUX, ENCFF837EBB 35116 ENCODE Processing Pipeline c3c963eb7159c35c5a9b3c3acd963fec https://www.encodeproject.org/files/ENCFF313BDA/@@download/ENCFF313BDA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF618NRW bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 433200223 ENCODE Processing Pipeline 09305d6dc2d092cc88efeea1c725140b https://www.encodeproject.org/files/ENCFF618NRW/@@download/ENCFF618NRW.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF689JTW bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 168973893 ENCODE Processing Pipeline 6f70da0e24e8fcdc8acf28be5c272afe https://www.encodeproject.org/files/ENCFF689JTW/@@download/ENCFF689JTW.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF487ZKN bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 180613637 ENCODE Processing Pipeline 85e6fb19f549110aacb0b4084ff99334 https://www.encodeproject.org/files/ENCFF487ZKN/@@download/ENCFF487ZKN.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF899EVQ bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 443568251 ENCODE Processing Pipeline e147a0bb2153e211aa3a809523029a86 https://www.encodeproject.org/files/ENCFF899EVQ/@@download/ENCFF899EVQ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF951LSV bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 362570791 ENCODE Processing Pipeline 50d42a58bb15cb461da6eedff6295be4 https://www.encodeproject.org/files/ENCFF951LSV/@@download/ENCFF951LSV.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF381DTR bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 707964927 ENCODE Processing Pipeline 31e7cdff4ac7a4ee7cea2e897eb52520 https://www.encodeproject.org/files/ENCFF381DTR/@@download/ENCFF381DTR.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF222RUB bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 4223083 ENCODE Processing Pipeline c60957f70a67428f5a4f24c98e561dda https://www.encodeproject.org/files/ENCFF222RUB/@@download/ENCFF222RUB.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF455MUC bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 3468731 ENCODE Processing Pipeline 66e5c23d8485c0e66c34c7276e574804 https://www.encodeproject.org/files/ENCFF455MUC/@@download/ENCFF455MUC.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF461FGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF222RUB, ENCFF455MUC, ENCFF595JYV 37777 ENCODE Processing Pipeline 47844d64dbbeff89ad267f2a4b329b58 https://www.encodeproject.org/files/ENCFF461FGJ/@@download/ENCFF461FGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF595JYV bed narrowPeak peaks and background as input for IDR ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 3409558 ENCODE Processing Pipeline da26d58730ca7b31c63da318e70aa432 https://www.encodeproject.org/files/ENCFF595JYV/@@download/ENCFF595JYV.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF629PVL bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF595JYV 7351704 ENCODE Processing Pipeline f4d964132ee3d1c313eb19a33f28941b https://www.encodeproject.org/files/ENCFF629PVL/@@download/ENCFF629PVL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF299YDM bed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF222RUB, ENCFF455MUC, ENCFF595JYV 19434 ENCODE Processing Pipeline 6a0b32f7f6924e910273f0f56f75a52d https://www.encodeproject.org/files/ENCFF299YDM/@@download/ENCFF299YDM.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF619JTE bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF455MUC 7235922 ENCODE Processing Pipeline 13f70f62f73e2e86360adbb3acb637ee https://www.encodeproject.org/files/ENCFF619JTE/@@download/ENCFF619JTE.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF443XRX bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF222RUB 10766224 ENCODE Processing Pipeline 3bfc7f99027c884cb215321ac2ab5d28 https://www.encodeproject.org/files/ENCFF443XRX/@@download/ENCFF443XRX.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF587XVH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299YDM 82437 ENCODE Processing Pipeline f3e6d74d181e74a42d5583791be029aa https://www.encodeproject.org/files/ENCFF587XVH/@@download/ENCFF587XVH.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF413OPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF461FGJ 107252 ENCODE Processing Pipeline ce57c2611b4343ed7afe66fda973709a https://www.encodeproject.org/files/ENCFF413OPL/@@download/ENCFF413OPL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read depth ENCFF588AQE fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 2 ENCFF542AWV 2351961594 Michael Snyder, Stanford 47b0206558f9d88ba552e285c181ce96 SRA:SRR6214309 https://www.encodeproject.org/files/ENCFF588AQE/@@download/ENCFF588AQE.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF216ZWY fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 1 ENCFF438VPJ 1964902618 Michael Snyder, Stanford f6c7fdcd37d877034a35b7744394c731 SRA:SRR6214308 https://www.encodeproject.org/files/ENCFF216ZWY/@@download/ENCFF216ZWY.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF542AWV fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 1 ENCFF588AQE 1985639513 Michael Snyder, Stanford 954d6fb62a901f0963c1902082ac64db SRA:SRR6214309 https://www.encodeproject.org/files/ENCFF542AWV/@@download/ENCFF542AWV.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF438VPJ fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 2 ENCFF216ZWY 2324079540 Michael Snyder, Stanford 1ed255af01a0f20790814e6e72dab5de SRA:SRR6214308 https://www.encodeproject.org/files/ENCFF438VPJ/@@download/ENCFF438VPJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF686AFF bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF643CGH 3820685840 ENCODE Processing Pipeline 1c88aeaa663bf1e2bdf1677ade700458 https://www.encodeproject.org/files/ENCFF686AFF/@@download/ENCFF686AFF.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF153LYV bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF643CGH 4077546105 ENCODE Processing Pipeline 814572c82959d7451bdd419ca2bc1a50 https://www.encodeproject.org/files/ENCFF153LYV/@@download/ENCFF153LYV.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF002PPW bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF643CGH 2381016182 ENCODE Processing Pipeline 228971b7f0dcf333e82d3050197ccd1f https://www.encodeproject.org/files/ENCFF002PPW/@@download/ENCFF002PPW.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF451KMO bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF643CGH 2787391511 ENCODE Processing Pipeline a1bfaf214828cd4a1011b9080d0c90e7 https://www.encodeproject.org/files/ENCFF451KMO/@@download/ENCFF451KMO.bam GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF273MCK bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 800389487 ENCODE Processing Pipeline 4f865a92bf442b38a556b97444ce0484 https://www.encodeproject.org/files/ENCFF273MCK/@@download/ENCFF273MCK.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF751APO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 972361295 ENCODE Processing Pipeline e881e7b81e8a7b3f4cc9a03c99d7f24f https://www.encodeproject.org/files/ENCFF751APO/@@download/ENCFF751APO.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF839UEW bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 5929231 ENCODE Processing Pipeline 81d46325e1a0be54668d9cc630f540e9 https://www.encodeproject.org/files/ENCFF839UEW/@@download/ENCFF839UEW.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF347XLQ bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF634YZT 13731882 ENCODE Processing Pipeline 630a8bf1d78c1a9a283b9edf0954c81b https://www.encodeproject.org/files/ENCFF347XLQ/@@download/ENCFF347XLQ.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF538RYD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 1521586237 ENCODE Processing Pipeline a6bc794ca15107e15001c7ac62b04b5d https://www.encodeproject.org/files/ENCFF538RYD/@@download/ENCFF538RYD.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF331LPM bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF466FUD 13816105 ENCODE Processing Pipeline 33e6a2809b82199684d047d5f0828669 https://www.encodeproject.org/files/ENCFF331LPM/@@download/ENCFF331LPM.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF244FHG bigBed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF770FCH 1349481 ENCODE Processing Pipeline a69d52f7d830b792f0d2be1b5bb6f7b2 https://www.encodeproject.org/files/ENCFF244FHG/@@download/ENCFF244FHG.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF773EVD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 979946636 ENCODE Processing Pipeline 41ed12aee2281719f5435d61d5c0645a https://www.encodeproject.org/files/ENCFF773EVD/@@download/ENCFF773EVD.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF106LWW bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 866787884 ENCODE Processing Pipeline e4619c09b4fd9cccade92a6c5abc1fe9 https://www.encodeproject.org/files/ENCFF106LWW/@@download/ENCFF106LWW.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF402ZMX bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 1830736446 ENCODE Processing Pipeline 8009b8a4b8f56d302e9d03e61cc4c5e9 https://www.encodeproject.org/files/ENCFF402ZMX/@@download/ENCFF402ZMX.bigWig GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF634YZT bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 6504678 ENCODE Processing Pipeline 18d0df32eefb02231c2d59899caec56a https://www.encodeproject.org/files/ENCFF634YZT/@@download/ENCFF634YZT.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF466FUD bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 7141253 ENCODE Processing Pipeline 73c49d48f4fab8652a85b60a499ea3ee https://www.encodeproject.org/files/ENCFF466FUD/@@download/ENCFF466FUD.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF790HTS bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF839UEW 11478112 ENCODE Processing Pipeline c773c342a5e9fcb434d6bbe2bf8f941a https://www.encodeproject.org/files/ENCFF790HTS/@@download/ENCFF790HTS.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF770FCH bed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF419RSJ, ENCFF466FUD, ENCFF634YZT, ENCFF839UEW 657397 ENCODE Processing Pipeline a71fd269e3ca6aa558d7d4236ba6ebcd https://www.encodeproject.org/files/ENCFF770FCH/@@download/ENCFF770FCH.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF370ZNL bed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF419RSJ, ENCFF466FUD, ENCFF634YZT, ENCFF839UEW 943694 ENCODE Processing Pipeline aeeae2da172d9965f2d709f535a14528 https://www.encodeproject.org/files/ENCFF370ZNL/@@download/ENCFF370ZNL.bed.gz GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF542RLE bigBed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF370ZNL 1786304 ENCODE Processing Pipeline cdb611c7f602d981e598bac3945c9609 https://www.encodeproject.org/files/ENCFF542RLE/@@download/ENCFF542RLE.bigBed GRCh38 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF510KSK bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF807MUK 4076308336 ENCODE Processing Pipeline 44668586b09a112fcdacb8f49a833b90 https://www.encodeproject.org/files/ENCFF510KSK/@@download/ENCFF510KSK.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF779ZDD bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF807MUK 3821927615 ENCODE Processing Pipeline 76686d9167160c527cd8148007bf20f8 https://www.encodeproject.org/files/ENCFF779ZDD/@@download/ENCFF779ZDD.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF431VZN bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF807MUK 2377933318 ENCODE Processing Pipeline 0ff95db1abec2bfec31e52bbf3b1bf4c https://www.encodeproject.org/files/ENCFF431VZN/@@download/ENCFF431VZN.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF720VMA bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF807MUK 2783670571 ENCODE Processing Pipeline 3b3e3ec67d9dc808dd26b1891a9b0c59 https://www.encodeproject.org/files/ENCFF720VMA/@@download/ENCFF720VMA.bam hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF356THD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 939373770 ENCODE Processing Pipeline ce1f8977d5c25870bac648ef21b70a79 https://www.encodeproject.org/files/ENCFF356THD/@@download/ENCFF356THD.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF229EBT bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 1112750979 ENCODE Processing Pipeline e516312444d32001c92f8369f7a30430 https://www.encodeproject.org/files/ENCFF229EBT/@@download/ENCFF229EBT.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF816QSI bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 1770416245 ENCODE Processing Pipeline bf1aeaaa5dc743c80c1054b347665d81 https://www.encodeproject.org/files/ENCFF816QSI/@@download/ENCFF816QSI.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF535MTO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 806104873 ENCODE Processing Pipeline 3d4f0efa851f472f2201ac2e000257e0 https://www.encodeproject.org/files/ENCFF535MTO/@@download/ENCFF535MTO.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF466WCO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 972185302 ENCODE Processing Pipeline 5e22353821d262756c89647dd60cc45a https://www.encodeproject.org/files/ENCFF466WCO/@@download/ENCFF466WCO.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF522MRN bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 1830224311 ENCODE Processing Pipeline 625d2f788fc02f30f2bb30c632847126 https://www.encodeproject.org/files/ENCFF522MRN/@@download/ENCFF522MRN.bigWig hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF468GKJ bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 6353290 ENCODE Processing Pipeline 008b3f6fefad5f4a940bed4ce79e1877 https://www.encodeproject.org/files/ENCFF468GKJ/@@download/ENCFF468GKJ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF884ZYH bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 5921939 ENCODE Processing Pipeline be6f2b6f5714f36b35311edc7ea25daf https://www.encodeproject.org/files/ENCFF884ZYH/@@download/ENCFF884ZYH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF172YHV bed narrowPeak peaks and background as input for IDR ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 7017369 ENCODE Processing Pipeline 986670d5355ffde4126c11d9c71a925f https://www.encodeproject.org/files/ENCFF172YHV/@@download/ENCFF172YHV.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF811GIS bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF468GKJ 13570418 ENCODE Processing Pipeline 69d54c9145f2c4b6d750115f6ca863ea https://www.encodeproject.org/files/ENCFF811GIS/@@download/ENCFF811GIS.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF037RKR bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF884ZYH 11463996 ENCODE Processing Pipeline 2933aa7ee01063d192b54e30a4dcf234 https://www.encodeproject.org/files/ENCFF037RKR/@@download/ENCFF037RKR.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF069YPC bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF172YHV 13660800 ENCODE Processing Pipeline aa75f246d5fdf84b0049d28e62d0dd88 https://www.encodeproject.org/files/ENCFF069YPC/@@download/ENCFF069YPC.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF006MIL bed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF001TDO, ENCFF172YHV, ENCFF468GKJ, ENCFF884ZYH 628083 ENCODE Processing Pipeline f36fe92b85a570e3f0ec0ed23afb76c8 https://www.encodeproject.org/files/ENCFF006MIL/@@download/ENCFF006MIL.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF944MMI bigBed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF006MIL 1298572 ENCODE Processing Pipeline 1989ae5571ebe9f0d97f6f6e4e4f2db6 https://www.encodeproject.org/files/ENCFF944MMI/@@download/ENCFF944MMI.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF095GMM bed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF001TDO, ENCFF172YHV, ENCFF468GKJ, ENCFF884ZYH 904897 ENCODE Processing Pipeline c23284256b4100cd845e6f844e468872 https://www.encodeproject.org/files/ENCFF095GMM/@@download/ENCFF095GMM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF013NVT bigBed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF095GMM 1726934 ENCODE Processing Pipeline 5197508370eaeec2174772660fe16225 https://www.encodeproject.org/files/ENCFF013NVT/@@download/ENCFF013NVT.bigBed hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking duplicate lane review ENCFF000VSJ bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VSY 385582943 Michael Snyder, Stanford 6595b15c5349209aedbd5a59a7380e6b https://www.encodeproject.org/files/ENCFF000VSJ/@@download/ENCFF000VSJ.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000VSK bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VTI 508399694 Michael Snyder, Stanford bc24d61ca296af463d3b62c2643607d5 https://www.encodeproject.org/files/ENCFF000VSK/@@download/ENCFF000VSK.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000VSL bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDX 610863 Michael Snyder, Stanford 1dbb5cd9707f9a3b08f2bc8a6232ac53 https://www.encodeproject.org/files/ENCFF000VSL/@@download/ENCFF000VSL.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000VSN bigWig signal ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 357319827 Michael Snyder, Stanford 73005ece3ae813304f66c029cf64c865 https://www.encodeproject.org/files/ENCFF000VSN/@@download/ENCFF000VSN.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSY fastq reads ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 691759421 Michael Snyder, Stanford 20fd11b8f14e303eb4161dba283220e4 https://www.encodeproject.org/files/ENCFF000VSY/@@download/ENCFF000VSY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF000VTI fastq reads ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 951985365 Michael Snyder, Stanford aa8a80cc516379b7856058ec0a2d4867 https://www.encodeproject.org/files/ENCFF000VTI/@@download/ENCFF000VTI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF001VDX bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 281931 Michael Snyder, Stanford 67e3bdb471751bbd4a1de94f79a27f04 https://www.encodeproject.org/files/ENCFF001VDX/@@download/ENCFF001VDX.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002COL bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 14118 ENCODE Consortium Analysis Working Group 9244c35a76113602e7ca61ee915f9e18 https://www.encodeproject.org/files/ENCFF002COL/@@download/ENCFF002COL.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF302CKV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COL 78014 ENCODE Consortium c00f33dcaf6798476223c97eadb02482 https://www.encodeproject.org/files/ENCFF302CKV/@@download/ENCFF302CKV.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF651OUX bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF643CGH 485978758 ENCODE Processing Pipeline 9fad95c0c1bbd990b106e06ad51ff33a https://www.encodeproject.org/files/ENCFF651OUX/@@download/ENCFF651OUX.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF723BPZ bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF643CGH 786994925 ENCODE Processing Pipeline fb4343e5311c3833f5c3c8b5ee0b1256 https://www.encodeproject.org/files/ENCFF723BPZ/@@download/ENCFF723BPZ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF290MTO bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF643CGH 1059091330 ENCODE Processing Pipeline b6e0c271726093d764bf3ca82a4f29c4 https://www.encodeproject.org/files/ENCFF290MTO/@@download/ENCFF290MTO.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF365KGA bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF643CGH 643441791 ENCODE Processing Pipeline 4988025ba6653332b5bc4da3f599a12b https://www.encodeproject.org/files/ENCFF365KGA/@@download/ENCFF365KGA.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF408BUD bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF807MUK 783610095 ENCODE Processing Pipeline 3587b23b010739d163bc2cc241808ade https://www.encodeproject.org/files/ENCFF408BUD/@@download/ENCFF408BUD.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF080UUC bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF807MUK 485061569 ENCODE Processing Pipeline 54c5da4242922791f420f81568ae65c1 https://www.encodeproject.org/files/ENCFF080UUC/@@download/ENCFF080UUC.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF498LKK bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF807MUK 1054239720 ENCODE Processing Pipeline 6acc06556a9c0a08811531fabd56c6c1 https://www.encodeproject.org/files/ENCFF498LKK/@@download/ENCFF498LKK.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF042ZNZ bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF807MUK 642945390 ENCODE Processing Pipeline a4e599b819cc5b96002ec94d76e5ba05 https://www.encodeproject.org/files/ENCFF042ZNZ/@@download/ENCFF042ZNZ.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF117YIC bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 162185959 ENCODE Processing Pipeline 149b7df7c859a8fbe875501757c4d448 https://www.encodeproject.org/files/ENCFF117YIC/@@download/ENCFF117YIC.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF021GTN bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF093WNM 130159 ENCODE Processing Pipeline 686f49c624257e91261e7d1458f9aaa8 https://www.encodeproject.org/files/ENCFF021GTN/@@download/ENCFF021GTN.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF024JTY bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 245266579 ENCODE Processing Pipeline f965e3a2de5bf64d969c4b988f4ada2f https://www.encodeproject.org/files/ENCFF024JTY/@@download/ENCFF024JTY.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF950MOS bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106CWI 9636122 ENCODE Processing Pipeline cfab212d6d8ea6f077bd1bf8cf6b78bb https://www.encodeproject.org/files/ENCFF950MOS/@@download/ENCFF950MOS.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF314JBH bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 453073439 ENCODE Processing Pipeline b184eb757f597b05ca7ca27f41f1ae44 https://www.encodeproject.org/files/ENCFF314JBH/@@download/ENCFF314JBH.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF093WNM bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 35610 ENCODE Processing Pipeline a5a9f0712ebc4d0f98401a4fc751fbe4 https://www.encodeproject.org/files/ENCFF093WNM/@@download/ENCFF093WNM.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF443VLF bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 4162002 ENCODE Processing Pipeline 98005e4e9e765f0631fea84f7e6b52e3 https://www.encodeproject.org/files/ENCFF443VLF/@@download/ENCFF443VLF.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF686JJM bed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF093WNM, ENCFF106CWI, ENCFF443VLF 9816 ENCODE Processing Pipeline d0187eb5fbc839caa280c6395173d2ba https://www.encodeproject.org/files/ENCFF686JJM/@@download/ENCFF686JJM.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF301RKI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF686JJM 51525 ENCODE Processing Pipeline 54f9de390924b22685dcf9c808d9ad16 https://www.encodeproject.org/files/ENCFF301RKI/@@download/ENCFF301RKI.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF783CCD bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 72539538 ENCODE Processing Pipeline 37dabdf5e3f5af895e94399768702d8d https://www.encodeproject.org/files/ENCFF783CCD/@@download/ENCFF783CCD.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF106CWI bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 3586452 ENCODE Processing Pipeline aa427312a1b7c1de79edac49970f5ef1 https://www.encodeproject.org/files/ENCFF106CWI/@@download/ENCFF106CWI.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF850EXY bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 195808141 ENCODE Processing Pipeline 01d29981aae830c373c5914d73c7ab98 https://www.encodeproject.org/files/ENCFF850EXY/@@download/ENCFF850EXY.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF072KIM bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 219532324 ENCODE Processing Pipeline c4ea9503df47a04731d13af64bc50ac4 https://www.encodeproject.org/files/ENCFF072KIM/@@download/ENCFF072KIM.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF830ZRB bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF443VLF 10778572 ENCODE Processing Pipeline 66140074ac30c9bded7b53a90e6c6c20 https://www.encodeproject.org/files/ENCFF830ZRB/@@download/ENCFF830ZRB.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF082JDH bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF093WNM, ENCFF106CWI, ENCFF443VLF 31791 ENCODE Processing Pipeline 10299328af6a1ef178cd4a17a91c4c3e https://www.encodeproject.org/files/ENCFF082JDH/@@download/ENCFF082JDH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF051VNY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF082JDH 110533 ENCODE Processing Pipeline ed428e8a7f6a68a4bf8a44a01a925e53 https://www.encodeproject.org/files/ENCFF051VNY/@@download/ENCFF051VNY.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF884PFA bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 4161085 ENCODE Processing Pipeline 7922aeeb03c51b2794528188ea07b240 https://www.encodeproject.org/files/ENCFF884PFA/@@download/ENCFF884PFA.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF003ZGU bed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF053BPC, ENCFF419RSJ, ENCFF881ANJ, ENCFF884PFA 10897 ENCODE Processing Pipeline 8b587751a7cb4a0b9dd8abfa05e19e3c https://www.encodeproject.org/files/ENCFF003ZGU/@@download/ENCFF003ZGU.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF794VJN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZGU 63540 ENCODE Processing Pipeline db8879d1828712559db1a186d6487c1b https://www.encodeproject.org/files/ENCFF794VJN/@@download/ENCFF794VJN.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF616PWI bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 72594380 ENCODE Processing Pipeline 6b407e0089b337e7970dde473b8281f3 https://www.encodeproject.org/files/ENCFF616PWI/@@download/ENCFF616PWI.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF756UXD bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 162216784 ENCODE Processing Pipeline 4239c6497dfe0e8f9b3204ef9ec90e7c https://www.encodeproject.org/files/ENCFF756UXD/@@download/ENCFF756UXD.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF983EKB bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 458504621 ENCODE Processing Pipeline 536868a0c72ccdcb11f3fd1d9968a4dc https://www.encodeproject.org/files/ENCFF983EKB/@@download/ENCFF983EKB.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF053BPC bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 3555921 ENCODE Processing Pipeline a476dd10ccdd2e6d4578a65e71ba8ca1 https://www.encodeproject.org/files/ENCFF053BPC/@@download/ENCFF053BPC.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF510SGU bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF881ANJ 179914 ENCODE Processing Pipeline 670a3e3cabe5d05085ed7cc9f738953b https://www.encodeproject.org/files/ENCFF510SGU/@@download/ENCFF510SGU.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF669VHU bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF053BPC 9532983 ENCODE Processing Pipeline 9abb49b8476e64ef573244b04b18598e https://www.encodeproject.org/files/ENCFF669VHU/@@download/ENCFF669VHU.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF830TNR bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 193221692 ENCODE Processing Pipeline 438440a301b0ee0b16b731a938aef4a8 https://www.encodeproject.org/files/ENCFF830TNR/@@download/ENCFF830TNR.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF040COP bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 246491629 ENCODE Processing Pipeline 668fa301f803bbddd32b8880df17db18 https://www.encodeproject.org/files/ENCFF040COP/@@download/ENCFF040COP.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF936CDJ bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 211897199 ENCODE Processing Pipeline a10385a43e9f55d8724e865fee793442 https://www.encodeproject.org/files/ENCFF936CDJ/@@download/ENCFF936CDJ.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF881ANJ bed narrowPeak peaks and background as input for IDR ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 43312 ENCODE Processing Pipeline dc38c4fd39057261900f3f99e0ad349e https://www.encodeproject.org/files/ENCFF881ANJ/@@download/ENCFF881ANJ.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF727FCY bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF884PFA 10777713 ENCODE Processing Pipeline bd074a8ba0b3042dd4f8c6d21b2dd772 https://www.encodeproject.org/files/ENCFF727FCY/@@download/ENCFF727FCY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF005JKU bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF053BPC, ENCFF419RSJ, ENCFF881ANJ, ENCFF884PFA 36338 ENCODE Processing Pipeline 075125a01ccc17f057d20302ca2b4036 https://www.encodeproject.org/files/ENCFF005JKU/@@download/ENCFF005JKU.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF616FBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF005JKU 116517 ENCODE Processing Pipeline 1e4db89d1afc80cd928ff78f84989f20 https://www.encodeproject.org/files/ENCFF616FBI/@@download/ENCFF616FBI.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample insufficient replicate concordance ENCFF423UJN bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF807MUK 1242920712 ENCODE Processing Pipeline 73daf0d415c7806f49464289d675618c https://www.encodeproject.org/files/ENCFF423UJN/@@download/ENCFF423UJN.bam hg19 released borderline replicate concordance ENCFF414RUN bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF807MUK 2100346637 ENCODE Processing Pipeline 6dac7ebd1cf3b16b50e7d384c29aeac5 https://www.encodeproject.org/files/ENCFF414RUN/@@download/ENCFF414RUN.bam hg19 released borderline replicate concordance ENCFF204SCC fastq reads ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 1 50 single-ended 1928647239 Richard Myers, HAIB 958fd5ff95d60799f33afd6e29ff50b5 SRA:SRR5331441 https://www.encodeproject.org/files/ENCFF204SCC/@@download/ENCFF204SCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF225JIA/ released borderline replicate concordance ENCFF583BRM fastq reads ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 1 50 single-ended 1141399880 Richard Myers, HAIB 40f5d8a369a6f215217d9bc1cb9d85eb SRA:SRR5331440 https://www.encodeproject.org/files/ENCFF583BRM/@@download/ENCFF583BRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF090NGH/ released borderline replicate concordance ENCFF563WQV bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF807MUK 896436280 ENCODE Processing Pipeline c863e3c9a4b93c39d6f7b7955df320d7 https://www.encodeproject.org/files/ENCFF563WQV/@@download/ENCFF563WQV.bam hg19 released borderline replicate concordance ENCFF534KZJ bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF807MUK 1529926606 ENCODE Processing Pipeline 6cccf27645b6e4e60e6abe2e7729c540 https://www.encodeproject.org/files/ENCFF534KZJ/@@download/ENCFF534KZJ.bam hg19 released borderline replicate concordance ENCFF811SCS bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 639684025 ENCODE Processing Pipeline 7fc27715a41dfd315c08290ac26790eb https://www.encodeproject.org/files/ENCFF811SCS/@@download/ENCFF811SCS.bigWig hg19 released borderline replicate concordance ENCFF095UKZ bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 1057410454 ENCODE Processing Pipeline acefa07fc98201284e7e07af365cf5b3 https://www.encodeproject.org/files/ENCFF095UKZ/@@download/ENCFF095UKZ.bigWig hg19 released borderline replicate concordance ENCFF347VWB bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 788447734 ENCODE Processing Pipeline 99037c0a7a22abc5b996d9d70c6deca2 https://www.encodeproject.org/files/ENCFF347VWB/@@download/ENCFF347VWB.bigWig hg19 released borderline replicate concordance ENCFF846TRX bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 6731053 ENCODE Processing Pipeline 7268d5254a0b1fb2e2af59a0bf851ec8 https://www.encodeproject.org/files/ENCFF846TRX/@@download/ENCFF846TRX.bed.gz hg19 released borderline replicate concordance ENCFF097ZFO bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 853905606 ENCODE Processing Pipeline 4cb7e7fb738337fa9a9b84d1d5c12e96 https://www.encodeproject.org/files/ENCFF097ZFO/@@download/ENCFF097ZFO.bigWig hg19 released borderline replicate concordance ENCFF493ZGH bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 6278467 ENCODE Processing Pipeline c3e6b8a485e8bd298fa9c2ae32c9ffe3 https://www.encodeproject.org/files/ENCFF493ZGH/@@download/ENCFF493ZGH.bed.gz hg19 released borderline replicate concordance ENCFF598QVS bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 573340837 ENCODE Processing Pipeline 4e51fdc7ece09c54827ebe4ce4863b0f https://www.encodeproject.org/files/ENCFF598QVS/@@download/ENCFF598QVS.bigWig hg19 released borderline replicate concordance ENCFF546BYE bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 1082344054 ENCODE Processing Pipeline 89964c6e3e19460471339dd70a41a62e https://www.encodeproject.org/files/ENCFF546BYE/@@download/ENCFF546BYE.bigWig hg19 released borderline replicate concordance ENCFF196ECC bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 7067949 ENCODE Processing Pipeline 84642ffd46d3d8d8d11695770f278b13 https://www.encodeproject.org/files/ENCFF196ECC/@@download/ENCFF196ECC.bed.gz hg19 released borderline replicate concordance ENCFF837ZXT bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF846TRX 13274009 ENCODE Processing Pipeline 5ea8af022cb66b9dc47f178cd1218817 https://www.encodeproject.org/files/ENCFF837ZXT/@@download/ENCFF837ZXT.bigBed hg19 released borderline replicate concordance ENCFF736FXF bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF493ZGH 13338058 ENCODE Processing Pipeline 4f6faf37cd24513670c7d25ef99ddb37 https://www.encodeproject.org/files/ENCFF736FXF/@@download/ENCFF736FXF.bigBed hg19 released borderline replicate concordance ENCFF582YLE bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF196ECC 13223049 ENCODE Processing Pipeline 32d68f751a1fe471a791a8ee6ef36195 https://www.encodeproject.org/files/ENCFF582YLE/@@download/ENCFF582YLE.bigBed hg19 released borderline replicate concordance ENCFF147IJZ bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF643CGH 1247194765 ENCODE Processing Pipeline e24f173d3d4293c90b32fe8e81445953 https://www.encodeproject.org/files/ENCFF147IJZ/@@download/ENCFF147IJZ.bam GRCh38 released borderline replicate concordance ENCFF893PGF bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF643CGH 899220998 ENCODE Processing Pipeline 9f88985aa7cc4b73b561cc827078b829 https://www.encodeproject.org/files/ENCFF893PGF/@@download/ENCFF893PGF.bam GRCh38 released borderline replicate concordance ENCFF287MOV bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF643CGH 2104045401 ENCODE Processing Pipeline e364ac2afffd3112452e3db0b2976a57 https://www.encodeproject.org/files/ENCFF287MOV/@@download/ENCFF287MOV.bam GRCh38 released borderline replicate concordance ENCFF641VCR bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF643CGH 1535357296 ENCODE Processing Pipeline 23870d173b9512c98100475d5f80a89b https://www.encodeproject.org/files/ENCFF641VCR/@@download/ENCFF641VCR.bam GRCh38 released borderline replicate concordance ENCFF877CEC bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 823044296 ENCODE Processing Pipeline d74898821bec70cdd66cf73ec222f13f https://www.encodeproject.org/files/ENCFF877CEC/@@download/ENCFF877CEC.bigWig GRCh38 released borderline replicate concordance ENCFF437QUC bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 714541921 ENCODE Processing Pipeline f657989b230373b871ec963074530e5a https://www.encodeproject.org/files/ENCFF437QUC/@@download/ENCFF437QUC.bigWig GRCh38 released borderline replicate concordance ENCFF302DMZ bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 1050242539 ENCODE Processing Pipeline 780efed8db1db2845e8a223110f49275 https://www.encodeproject.org/files/ENCFF302DMZ/@@download/ENCFF302DMZ.bigWig GRCh38 released borderline replicate concordance ENCFF734YAE bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 776137963 ENCODE Processing Pipeline 50049f5bb05078588dfc023b87e19d5f https://www.encodeproject.org/files/ENCFF734YAE/@@download/ENCFF734YAE.bigWig GRCh38 released borderline replicate concordance ENCFF264JDM bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 587488136 ENCODE Processing Pipeline f854ea0c16dd3c7ba00fc934d081ce01 https://www.encodeproject.org/files/ENCFF264JDM/@@download/ENCFF264JDM.bigWig GRCh38 released borderline replicate concordance ENCFF794XLB bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 1072582154 ENCODE Processing Pipeline a92b225fa9c4f28cde78a66348932c8b https://www.encodeproject.org/files/ENCFF794XLB/@@download/ENCFF794XLB.bigWig GRCh38 released borderline replicate concordance ENCFF965CZF bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 6939696 ENCODE Processing Pipeline 0d512286c7257a791cc463627d578bb8 https://www.encodeproject.org/files/ENCFF965CZF/@@download/ENCFF965CZF.bed.gz GRCh38 released borderline replicate concordance ENCFF990NXB bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF965CZF 13208487 ENCODE Processing Pipeline 26003198a7b20f65153d59d08dcdc634 https://www.encodeproject.org/files/ENCFF990NXB/@@download/ENCFF990NXB.bigBed GRCh38 released borderline replicate concordance ENCFF775QKY bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 6590975 ENCODE Processing Pipeline f204f96d49b1dd6509b93563af2d4151 https://www.encodeproject.org/files/ENCFF775QKY/@@download/ENCFF775QKY.bed.gz GRCh38 released borderline replicate concordance ENCFF817EFX bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF775QKY 13254192 ENCODE Processing Pipeline eaa8dd3d410f60bc607dd7c2fe71641d https://www.encodeproject.org/files/ENCFF817EFX/@@download/ENCFF817EFX.bigBed GRCh38 released borderline replicate concordance ENCFF907JXH bed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF775QKY, ENCFF799PZN, ENCFF965CZF 175819 ENCODE Processing Pipeline d3ed189a54e6aa34f5cf94145c517edc https://www.encodeproject.org/files/ENCFF907JXH/@@download/ENCFF907JXH.bed.gz GRCh38 released borderline replicate concordance ENCFF799PZN bed narrowPeak peaks and background as input for IDR ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 6050631 ENCODE Processing Pipeline 016d9a42e5258f51490e7000af1c9b39 https://www.encodeproject.org/files/ENCFF799PZN/@@download/ENCFF799PZN.bed.gz GRCh38 released borderline replicate concordance ENCFF418ORB bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF799PZN 13350675 ENCODE Processing Pipeline 6c927398f2adec261d5ad07676d3d787 https://www.encodeproject.org/files/ENCFF418ORB/@@download/ENCFF418ORB.bigBed GRCh38 released borderline replicate concordance ENCFF125JVH bigBed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF907JXH 407064 ENCODE Processing Pipeline 8cac6cd47e344ecb97a41d959602dc93 https://www.encodeproject.org/files/ENCFF125JVH/@@download/ENCFF125JVH.bigBed GRCh38 released borderline replicate concordance ENCFF630FLK bed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF775QKY, ENCFF799PZN, ENCFF965CZF 264396 ENCODE Processing Pipeline 1307e25bd4c8b822ca0dca5bf395edec https://www.encodeproject.org/files/ENCFF630FLK/@@download/ENCFF630FLK.bed.gz GRCh38 released borderline replicate concordance ENCFF688FED bigBed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF630FLK 551743 ENCODE Processing Pipeline 6fa137356bf686d6dabfa91fd6ab94a0 https://www.encodeproject.org/files/ENCFF688FED/@@download/ENCFF688FED.bigBed GRCh38 released borderline replicate concordance ENCFF613ZJY bigBed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF266JBU 305218 ENCODE Processing Pipeline 6654f75130692c0513bce6ccd57a4447 https://www.encodeproject.org/files/ENCFF613ZJY/@@download/ENCFF613ZJY.bigBed hg19 released borderline replicate concordance ENCFF266JBU bed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF196ECC, ENCFF493ZGH, ENCFF846TRX 148381 ENCODE Processing Pipeline 75f8120aab0d90b0c8f68f250e263996 https://www.encodeproject.org/files/ENCFF266JBU/@@download/ENCFF266JBU.bed.gz hg19 released borderline replicate concordance ENCFF845VWY bigBed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF123WEZ 484391 ENCODE Processing Pipeline 96e9c0dd8e3fed72c1b21d4cae7c5394 https://www.encodeproject.org/files/ENCFF845VWY/@@download/ENCFF845VWY.bigBed hg19 released borderline replicate concordance ENCFF123WEZ bed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF196ECC, ENCFF493ZGH, ENCFF846TRX 217520 ENCODE Processing Pipeline 6c56ef3935736be7731a0100ba97731f https://www.encodeproject.org/files/ENCFF123WEZ/@@download/ENCFF123WEZ.bed.gz hg19 released borderline replicate concordance ENCFF000VZO bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 311437096 Kevin Struhl, HMS ffbd704f77cb644d5012301533cd0536 https://www.encodeproject.org/files/ENCFF000VZO/@@download/ENCFF000VZO.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VZP bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 325623406 Kevin Struhl, HMS c606a5f7c06d6fc5aa8af0496a43336d https://www.encodeproject.org/files/ENCFF000VZP/@@download/ENCFF000VZP.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VZQ bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEU 401078 Kevin Struhl, HMS d6511f44d0efc269e602ec627562f96a https://www.encodeproject.org/files/ENCFF000VZQ/@@download/ENCFF000VZQ.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VZR fastq reads ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 566518137 Kevin Struhl, HMS 5bf596cb8cce31e54b2ae9f76a64d3be https://www.encodeproject.org/files/ENCFF000VZR/@@download/ENCFF000VZR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VZT fastq reads ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 650489676 Kevin Struhl, HMS 62d1807528ace2544dbcef3e53dcd7dd https://www.encodeproject.org/files/ENCFF000VZT/@@download/ENCFF000VZT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VZV bigWig signal ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 263611090 Kevin Struhl, HMS 795ef630c628b44335eb1bda66fcdd82 https://www.encodeproject.org/files/ENCFF000VZV/@@download/ENCFF000VZV.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001VEU bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 207036 Kevin Struhl, HMS 4f30e896212a445a0af2f54a09d00bd4 https://www.encodeproject.org/files/ENCFF001VEU/@@download/ENCFF001VEU.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CPB bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 48248 ENCODE Consortium Analysis Working Group d951149e467a73e4637f374a626b67bb https://www.encodeproject.org/files/ENCFF002CPB/@@download/ENCFF002CPB.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF525IWI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPB 191397 ENCODE Consortium 3d31444575e3871ddcbf2422e5703d0f https://www.encodeproject.org/files/ENCFF525IWI/@@download/ENCFF525IWI.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF743AGP bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF643CGH 661485527 ENCODE Processing Pipeline 5c30471390669f9afbc2e71ef7329ad8 https://www.encodeproject.org/files/ENCFF743AGP/@@download/ENCFF743AGP.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF280SUM bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF643CGH 370799104 ENCODE Processing Pipeline 6d67d5971bd092e28a788feec29f0b89 https://www.encodeproject.org/files/ENCFF280SUM/@@download/ENCFF280SUM.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF693TLQ bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF643CGH 586414652 ENCODE Processing Pipeline be9cc506e3e6da6220e66be5cfa7bef9 https://www.encodeproject.org/files/ENCFF693TLQ/@@download/ENCFF693TLQ.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF595NGV bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF643CGH 391867513 ENCODE Processing Pipeline 2371505050f9222102bd2a8f53ccdeb7 https://www.encodeproject.org/files/ENCFF595NGV/@@download/ENCFF595NGV.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF576YMK bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF807MUK 583660100 ENCODE Processing Pipeline 3639415ed79b6abf90e01f51430c34d5 https://www.encodeproject.org/files/ENCFF576YMK/@@download/ENCFF576YMK.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF282HGE bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF807MUK 371009343 ENCODE Processing Pipeline f33a150ee263cf2e560af55d31d0f140 https://www.encodeproject.org/files/ENCFF282HGE/@@download/ENCFF282HGE.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF433HND bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF807MUK 392017313 ENCODE Processing Pipeline b5a089e1a2599747b99ecfac66934ac9 https://www.encodeproject.org/files/ENCFF433HND/@@download/ENCFF433HND.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF803BZL bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF807MUK 657883567 ENCODE Processing Pipeline 0df204a4e23af594ba6567f141ced427 https://www.encodeproject.org/files/ENCFF803BZL/@@download/ENCFF803BZL.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF788ZBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278GJK 91357 ENCODE Processing Pipeline 8206398583006bff362ed106b3091130 https://www.encodeproject.org/files/ENCFF788ZBI/@@download/ENCFF788ZBI.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF191QZC bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 175439070 ENCODE Processing Pipeline 508c6daafee8bcf58e9fe80ec8505033 https://www.encodeproject.org/files/ENCFF191QZC/@@download/ENCFF191QZC.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF169EJC bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 323785654 ENCODE Processing Pipeline abc77796619aa5c8989a05059df26137 https://www.encodeproject.org/files/ENCFF169EJC/@@download/ENCFF169EJC.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF333CPM bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 51982 ENCODE Processing Pipeline bc68e65a7b622a6d8503502a6f6859f5 https://www.encodeproject.org/files/ENCFF333CPM/@@download/ENCFF333CPM.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF423EOR bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 3484431 ENCODE Processing Pipeline 7f0774c94b185ffe04909390f2470dbf https://www.encodeproject.org/files/ENCFF423EOR/@@download/ENCFF423EOR.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF070MLX bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF333CPM 146297 ENCODE Processing Pipeline c61a396c8e8a3e71ec16255edec69b65 https://www.encodeproject.org/files/ENCFF070MLX/@@download/ENCFF070MLX.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF608YCM bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423EOR 7156379 ENCODE Processing Pipeline feff3b16762daea53b9dfeb81f4b13d0 https://www.encodeproject.org/files/ENCFF608YCM/@@download/ENCFF608YCM.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF480ZCC bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF063ESL 10190938 ENCODE Processing Pipeline 9405624c4110d03f00c280894ce185cd https://www.encodeproject.org/files/ENCFF480ZCC/@@download/ENCFF480ZCC.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF414JLN bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ESL, ENCFF333CPM, ENCFF423EOR 21975 ENCODE Processing Pipeline 151656e4361aa7092b6b3591b2f30ddb https://www.encodeproject.org/files/ENCFF414JLN/@@download/ENCFF414JLN.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF988RYW bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 188392469 ENCODE Processing Pipeline 56a641832b2db82d7bdf40a5cf286417 https://www.encodeproject.org/files/ENCFF988RYW/@@download/ENCFF988RYW.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF053SPJ bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 175184234 ENCODE Processing Pipeline c09d6e9c4bcce89b9e71dce77a07edb2 https://www.encodeproject.org/files/ENCFF053SPJ/@@download/ENCFF053SPJ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF381TUR bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 148779719 ENCODE Processing Pipeline f59eba24e722ae4edbb8eef7b8d24f03 https://www.encodeproject.org/files/ENCFF381TUR/@@download/ENCFF381TUR.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF878TJY bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 323738510 ENCODE Processing Pipeline 0d620e66b060b5a0140b33142f704ea2 https://www.encodeproject.org/files/ENCFF878TJY/@@download/ENCFF878TJY.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF961DCG bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 50633 ENCODE Processing Pipeline e7e521317ef08468b4e0f3fd767e0db6 https://www.encodeproject.org/files/ENCFF961DCG/@@download/ENCFF961DCG.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF423HZJ bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF961DCG 144469 ENCODE Processing Pipeline e8609432230fa83a827c4c5850e8b162 https://www.encodeproject.org/files/ENCFF423HZJ/@@download/ENCFF423HZJ.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF470OOI bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF091YJN 7162347 ENCODE Processing Pipeline 648555c507641d62d460906b97f9d929 https://www.encodeproject.org/files/ENCFF470OOI/@@download/ENCFF470OOI.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF278GJK bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF091YJN, ENCFF419RSJ, ENCFF802BPF, ENCFF961DCG 21860 ENCODE Processing Pipeline 6ff434803bec3ea663a04dcdb5e91a2c https://www.encodeproject.org/files/ENCFF278GJK/@@download/ENCFF278GJK.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF192AMC bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 188197950 ENCODE Processing Pipeline c34f6c75e3aca65d4d11b4ca2e213543 https://www.encodeproject.org/files/ENCFF192AMC/@@download/ENCFF192AMC.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF091YJN bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 3486122 ENCODE Processing Pipeline 835d54424a46369a84959f3ce59608e0 https://www.encodeproject.org/files/ENCFF091YJN/@@download/ENCFF091YJN.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF099HDY bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF802BPF 10191084 ENCODE Processing Pipeline ba14efaa84afb69252ef2adc3ff72709 https://www.encodeproject.org/files/ENCFF099HDY/@@download/ENCFF099HDY.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF261EXW bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 149846340 ENCODE Processing Pipeline 2a56803edc4511b54900100fb030d6b0 https://www.encodeproject.org/files/ENCFF261EXW/@@download/ENCFF261EXW.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF063ESL bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 3881522 ENCODE Processing Pipeline 27648d2736c3616b1c025b8685cbb16c https://www.encodeproject.org/files/ENCFF063ESL/@@download/ENCFF063ESL.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF213VQG bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 75573348 ENCODE Processing Pipeline 82d238b5649025c3b6e72b72a1d965dd https://www.encodeproject.org/files/ENCFF213VQG/@@download/ENCFF213VQG.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF800ZEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414JLN 91286 ENCODE Processing Pipeline cef43c9b953186c59d08929d53bac5bd https://www.encodeproject.org/files/ENCFF800ZEJ/@@download/ENCFF800ZEJ.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF005ZID bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 86241980 ENCODE Processing Pipeline 0030a0b43651d31b29be2e3c868987ae https://www.encodeproject.org/files/ENCFF005ZID/@@download/ENCFF005ZID.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF501LQT bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 187607931 ENCODE Processing Pipeline ff5769df8347b8f1d83b7b5f3918dacd https://www.encodeproject.org/files/ENCFF501LQT/@@download/ENCFF501LQT.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF675HFQ bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 188097483 ENCODE Processing Pipeline 481dc63d4c6cc8bf7014ea243de9353f https://www.encodeproject.org/files/ENCFF675HFQ/@@download/ENCFF675HFQ.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF802BPF bed narrowPeak peaks and background as input for IDR ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 3878173 ENCODE Processing Pipeline e0b49c63c6136e6d28ed805a0fc09003 https://www.encodeproject.org/files/ENCFF802BPF/@@download/ENCFF802BPF.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF445LTV fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 1 ENCFF159UKF 2038515729 Michael Snyder, Stanford 6cc153eada88b46a0d44af9bef93a141 SRA:SRR6213398 https://www.encodeproject.org/files/ENCFF445LTV/@@download/ENCFF445LTV.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF159UKF fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 2 ENCFF445LTV 2476289480 Michael Snyder, Stanford f952cc540fbd3616bf47f7077d9f8abe SRA:SRR6213398 https://www.encodeproject.org/files/ENCFF159UKF/@@download/ENCFF159UKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF540RXL fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 1 ENCFF907SBN 1645076999 Michael Snyder, Stanford 5cfd003dea8bdd05c8a56736c50405de SRA:SRR6213399 https://www.encodeproject.org/files/ENCFF540RXL/@@download/ENCFF540RXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF907SBN fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 2 ENCFF540RXL 1936116544 Michael Snyder, Stanford 7bf82dc37142d3476377dec6af1ae225 SRA:SRR6213399 https://www.encodeproject.org/files/ENCFF907SBN/@@download/ENCFF907SBN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF649NJP bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF643CGH, ENCFF907SBN 3421802092 ENCODE Processing Pipeline 6264cf1645302d0c9218efaa92789a12 https://www.encodeproject.org/files/ENCFF649NJP/@@download/ENCFF649NJP.bam GRCh38 released mild to moderate bottlenecking ENCFF599CQU bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF643CGH, ENCFF907SBN 2659275111 ENCODE Processing Pipeline 045df7d2b03ec7c602f283a8eab11391 https://www.encodeproject.org/files/ENCFF599CQU/@@download/ENCFF599CQU.bam GRCh38 released mild to moderate bottlenecking ENCFF792QLV bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF643CGH 4339183583 ENCODE Processing Pipeline 5a5e93ba31ece6b741655d2b6a093d31 https://www.encodeproject.org/files/ENCFF792QLV/@@download/ENCFF792QLV.bam GRCh38 released mild to moderate bottlenecking ENCFF688OKC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF643CGH 3132644010 ENCODE Processing Pipeline b7423388b2388d30c2bd8f680546b806 https://www.encodeproject.org/files/ENCFF688OKC/@@download/ENCFF688OKC.bam GRCh38 released mild to moderate bottlenecking ENCFF424RSU bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 1166559760 ENCODE Processing Pipeline 99541f16ebc941e8ac643199492c88e1 https://www.encodeproject.org/files/ENCFF424RSU/@@download/ENCFF424RSU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF518XFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF245FMD 664559 ENCODE Processing Pipeline 5519d7dc41fa4a02ca7612268bcfed52 https://www.encodeproject.org/files/ENCFF518XFZ/@@download/ENCFF518XFZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF049PPV bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 1053248148 ENCODE Processing Pipeline 2eed3822f0318005f040121695e34e93 https://www.encodeproject.org/files/ENCFF049PPV/@@download/ENCFF049PPV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF473QPR bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 1780918827 ENCODE Processing Pipeline d4080eb1f7073af8c9fb827df4b5c3d4 https://www.encodeproject.org/files/ENCFF473QPR/@@download/ENCFF473QPR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF417XWN bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 1105723111 ENCODE Processing Pipeline 03fee8be4a19560bc221da93aae63523 https://www.encodeproject.org/files/ENCFF417XWN/@@download/ENCFF417XWN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF383MVD bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 978958118 ENCODE Processing Pipeline 443e2fd3aa9feecebc228b7e0a8fbf3c https://www.encodeproject.org/files/ENCFF383MVD/@@download/ENCFF383MVD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF936AEZ bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 1976785363 ENCODE Processing Pipeline d3d61a56cc80e9ddcea1739593926f13 https://www.encodeproject.org/files/ENCFF936AEZ/@@download/ENCFF936AEZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF605KHC bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 6125803 ENCODE Processing Pipeline bf665205daa769aa72466f3308353ca9 https://www.encodeproject.org/files/ENCFF605KHC/@@download/ENCFF605KHC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF323EFK bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 6186551 ENCODE Processing Pipeline d150cb49d238aa6900a7c5fac6c8c6ac https://www.encodeproject.org/files/ENCFF323EFK/@@download/ENCFF323EFK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF149BIZ bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 7163127 ENCODE Processing Pipeline ac1a09f103e8e55a1e4d74e8b98385ec https://www.encodeproject.org/files/ENCFF149BIZ/@@download/ENCFF149BIZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF502JDM bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF605KHC 13443219 ENCODE Processing Pipeline f33e98d168478f8b17506d5c04724dac https://www.encodeproject.org/files/ENCFF502JDM/@@download/ENCFF502JDM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF597OQT bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF323EFK 13251077 ENCODE Processing Pipeline 5615e30d0c81e0cde0ac786c1e60f6a5 https://www.encodeproject.org/files/ENCFF597OQT/@@download/ENCFF597OQT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF317IWJ bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ 13262086 ENCODE Processing Pipeline 9303ff4350caac9ce2109d18e2bdaafe https://www.encodeproject.org/files/ENCFF317IWJ/@@download/ENCFF317IWJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF245FMD bed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ, ENCFF323EFK, ENCFF419RSJ, ENCFF605KHC 297707 ENCODE Processing Pipeline 231cca593c2e7bfc3efd350281f24e7b https://www.encodeproject.org/files/ENCFF245FMD/@@download/ENCFF245FMD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF725YZH bed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ, ENCFF323EFK, ENCFF419RSJ, ENCFF605KHC 451504 ENCODE Processing Pipeline 4f1057c915b4de1b353b6222ef59be36 https://www.encodeproject.org/files/ENCFF725YZH/@@download/ENCFF725YZH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF426GTD bigBed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF725YZH 920655 ENCODE Processing Pipeline 55574a2b0fde0b658b95069a729d3260 https://www.encodeproject.org/files/ENCFF426GTD/@@download/ENCFF426GTD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF518TTP bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF807MUK, ENCFF907SBN 3421165884 ENCODE Processing Pipeline 42b17890bedbef0b65e2a6db8c9ad0bb https://www.encodeproject.org/files/ENCFF518TTP/@@download/ENCFF518TTP.bam hg19 released mild to moderate bottlenecking ENCFF650SPH bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF807MUK 4339211144 ENCODE Processing Pipeline 31497d63d3b744c372f29be2cb561590 https://www.encodeproject.org/files/ENCFF650SPH/@@download/ENCFF650SPH.bam hg19 released mild to moderate bottlenecking ENCFF665UFO bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF807MUK, ENCFF907SBN 2655828332 ENCODE Processing Pipeline 0c77a8ebe538832849943a744402b18d https://www.encodeproject.org/files/ENCFF665UFO/@@download/ENCFF665UFO.bam hg19 released mild to moderate bottlenecking ENCFF209ASC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF807MUK 3125279794 ENCODE Processing Pipeline d8bea431c1c6e842615615b72beb1987 https://www.encodeproject.org/files/ENCFF209ASC/@@download/ENCFF209ASC.bam hg19 released mild to moderate bottlenecking ENCFF090IGZ bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 950898411 ENCODE Processing Pipeline b3c306af9bedf98587de2ce486508b0c https://www.encodeproject.org/files/ENCFF090IGZ/@@download/ENCFF090IGZ.bigWig hg19 released mild to moderate bottlenecking ENCFF629IWD bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 1021385405 ENCODE Processing Pipeline a83ca62ededb91325cc93ad37fbbea78 https://www.encodeproject.org/files/ENCFF629IWD/@@download/ENCFF629IWD.bigWig hg19 released mild to moderate bottlenecking ENCFF094OMB bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 1611522597 ENCODE Processing Pipeline 575f44a1c81ec4bbf7a311106fb351fa https://www.encodeproject.org/files/ENCFF094OMB/@@download/ENCFF094OMB.bigWig hg19 released mild to moderate bottlenecking ENCFF701BMB bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 1105983127 ENCODE Processing Pipeline 313ef80cbdfc17d9a072b906d42743c8 https://www.encodeproject.org/files/ENCFF701BMB/@@download/ENCFF701BMB.bigWig hg19 released mild to moderate bottlenecking ENCFF296JRZ bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 977637104 ENCODE Processing Pipeline 3f7f5aaf78d413bfc095dba0d42d502b https://www.encodeproject.org/files/ENCFF296JRZ/@@download/ENCFF296JRZ.bigWig hg19 released mild to moderate bottlenecking ENCFF184PLB bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 1993191169 ENCODE Processing Pipeline d47404672534dea7d1a693352486d7f6 https://www.encodeproject.org/files/ENCFF184PLB/@@download/ENCFF184PLB.bigWig hg19 released mild to moderate bottlenecking ENCFF084PVB bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 6124128 ENCODE Processing Pipeline f6e55c76acb59c0fc90e577d41a0e122 https://www.encodeproject.org/files/ENCFF084PVB/@@download/ENCFF084PVB.bed.gz hg19 released mild to moderate bottlenecking ENCFF866OLZ bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 6220898 ENCODE Processing Pipeline 415cba7801aa8315edc91159750daa79 https://www.encodeproject.org/files/ENCFF866OLZ/@@download/ENCFF866OLZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF747JGV bed narrowPeak peaks and background as input for IDR ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 7147822 ENCODE Processing Pipeline 96a4a2c79116c6705032ba04a3ad548b https://www.encodeproject.org/files/ENCFF747JGV/@@download/ENCFF747JGV.bed.gz hg19 released mild to moderate bottlenecking ENCFF586ERO bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF084PVB 13437466 ENCODE Processing Pipeline a61223cef2536cccb70c2456abb607df https://www.encodeproject.org/files/ENCFF586ERO/@@download/ENCFF586ERO.bigBed hg19 released mild to moderate bottlenecking ENCFF170UXI bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF866OLZ 13280831 ENCODE Processing Pipeline eab75c8dbbf059fd648eaf9513d12f2c https://www.encodeproject.org/files/ENCFF170UXI/@@download/ENCFF170UXI.bigBed hg19 released mild to moderate bottlenecking ENCFF125KJK bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF747JGV 13236307 ENCODE Processing Pipeline 15882f14cc8438646932a7c44ffdbe69 https://www.encodeproject.org/files/ENCFF125KJK/@@download/ENCFF125KJK.bigBed hg19 released mild to moderate bottlenecking ENCFF748WOQ bed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF084PVB, ENCFF747JGV, ENCFF866OLZ 293463 ENCODE Processing Pipeline 8e3e9a415d646cb89c43d807791c1043 https://www.encodeproject.org/files/ENCFF748WOQ/@@download/ENCFF748WOQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF613NTN bigBed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF748WOQ 658917 ENCODE Processing Pipeline 5774c232dc3efe07136dd8454e80b810 https://www.encodeproject.org/files/ENCFF613NTN/@@download/ENCFF613NTN.bigBed hg19 released mild to moderate bottlenecking ENCFF012JXJ bed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF084PVB, ENCFF747JGV, ENCFF866OLZ 440429 ENCODE Processing Pipeline 444df22c98d4fcff23ed0065c0dcd22e https://www.encodeproject.org/files/ENCFF012JXJ/@@download/ENCFF012JXJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF154RKL bigBed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF012JXJ 905993 ENCODE Processing Pipeline 028bc7bb007592dcaf0a50ee1d95642f https://www.encodeproject.org/files/ENCFF154RKL/@@download/ENCFF154RKL.bigBed hg19 released mild to moderate bottlenecking ENCFF000VTP bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEB 2035791 Michael Snyder, Stanford ce086a6619e11d046da016877e73975d https://www.encodeproject.org/files/ENCFF000VTP/@@download/ENCFF000VTP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VTR bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VUO 344442464 Michael Snyder, Stanford 3a30d22938d5e825afa7ec25258c09cf https://www.encodeproject.org/files/ENCFF000VTR/@@download/ENCFF000VTR.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VTS bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VUP 443770965 Michael Snyder, Stanford 910c252082a3fd517f0ffeb0a36d80ea https://www.encodeproject.org/files/ENCFF000VTS/@@download/ENCFF000VTS.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VTT bigWig signal ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 326841545 Michael Snyder, Stanford 9d57ab69f93dd795e314cd55476f33b1 https://www.encodeproject.org/files/ENCFF000VTT/@@download/ENCFF000VTT.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VUO fastq reads ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 611592240 Michael Snyder, Stanford a3c38351ad431182db27f5cecff6e34c https://www.encodeproject.org/files/ENCFF000VUO/@@download/ENCFF000VUO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000VUP fastq reads ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 781482460 Michael Snyder, Stanford 68d8fbe993500addb9d205f34bdb90ca https://www.encodeproject.org/files/ENCFF000VUP/@@download/ENCFF000VUP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released inconsistent control read length, low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001VEB bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 816475 Michael Snyder, Stanford 740448683a57cfc71475d5c19b6e85da https://www.encodeproject.org/files/ENCFF001VEB/@@download/ENCFF001VEB.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002COO bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 390735 ENCODE Consortium Analysis Working Group 3a4c289605de5b058f668f79ac5b6204 https://www.encodeproject.org/files/ENCFF002COO/@@download/ENCFF002COO.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF088OFU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COO 1012978 ENCODE Consortium 19771de9e4196cd693b4284c3a42b2a5 https://www.encodeproject.org/files/ENCFF088OFU/@@download/ENCFF088OFU.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF354UXE bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF643CGH 693604865 ENCODE Processing Pipeline e72b468467d0d720e7d6165f2aca077a https://www.encodeproject.org/files/ENCFF354UXE/@@download/ENCFF354UXE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF201PVR bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF643CGH 867953379 ENCODE Processing Pipeline 47b8f39ed234196f07b1e5bd0fb8797c https://www.encodeproject.org/files/ENCFF201PVR/@@download/ENCFF201PVR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF055UMJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF643CGH 560825464 ENCODE Processing Pipeline e866a3e4278e9ced5c2c89446f982e84 https://www.encodeproject.org/files/ENCFF055UMJ/@@download/ENCFF055UMJ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF188RRJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF643CGH 437362610 ENCODE Processing Pipeline 335f6482fdbcd5e9c566d4dbadd7d39f https://www.encodeproject.org/files/ENCFF188RRJ/@@download/ENCFF188RRJ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF682RBP bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF807MUK 691151303 ENCODE Processing Pipeline de6acbef880d51ec66742155b2547313 https://www.encodeproject.org/files/ENCFF682RBP/@@download/ENCFF682RBP.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF760ZDH bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF807MUK 436549858 ENCODE Processing Pipeline 6be1f13593df3e79895c8ee5c24fd161 https://www.encodeproject.org/files/ENCFF760ZDH/@@download/ENCFF760ZDH.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF166KHW bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF807MUK 864823720 ENCODE Processing Pipeline 5c8865e3bf084386967273b69f5e2ddb https://www.encodeproject.org/files/ENCFF166KHW/@@download/ENCFF166KHW.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF450UXL bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF807MUK 560438095 ENCODE Processing Pipeline 4d614498d792ce60254f058d49f2750f https://www.encodeproject.org/files/ENCFF450UXL/@@download/ENCFF450UXL.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF277VNV bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 175656228 ENCODE Processing Pipeline 708a5ed34bbaf2e07115d57934120b34 https://www.encodeproject.org/files/ENCFF277VNV/@@download/ENCFF277VNV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF779XER bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 4742342 ENCODE Processing Pipeline 8889ed38c32f4cb12f7fe11118d5c60f https://www.encodeproject.org/files/ENCFF779XER/@@download/ENCFF779XER.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF532JZR bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF289WNM 9591584 ENCODE Processing Pipeline eb8fd08d9312e4e3f8749f89a44b9039 https://www.encodeproject.org/files/ENCFF532JZR/@@download/ENCFF532JZR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF848RCO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF712GLE 641008 ENCODE Processing Pipeline e9f260028925e4d73a9acf4f02ad8a3b https://www.encodeproject.org/files/ENCFF848RCO/@@download/ENCFF848RCO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF569MNZ bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 164816743 ENCODE Processing Pipeline a4a4f69c94d95324c7e48c2c7a95ab32 https://www.encodeproject.org/files/ENCFF569MNZ/@@download/ENCFF569MNZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF636KPQ bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF346VHH 12965402 ENCODE Processing Pipeline 2b2260cc54e1eb68fe81f2752a353b65 https://www.encodeproject.org/files/ENCFF636KPQ/@@download/ENCFF636KPQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF225LRZ bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 78716583 ENCODE Processing Pipeline bcf12e508e77edef5218c95f7fd00ed7 https://www.encodeproject.org/files/ENCFF225LRZ/@@download/ENCFF225LRZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF289WNM bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 4083917 ENCODE Processing Pipeline f6becf07c7072d721a616f82d8828bd6 https://www.encodeproject.org/files/ENCFF289WNM/@@download/ENCFF289WNM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF346VHH bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 5087835 ENCODE Processing Pipeline d7ffc7c25cc8a516a8ac6702053932a6 https://www.encodeproject.org/files/ENCFF346VHH/@@download/ENCFF346VHH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF712GLE bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF289WNM, ENCFF346VHH, ENCFF779XER 295908 ENCODE Processing Pipeline 0830d755f4ca94b216c9c4277888ad5a https://www.encodeproject.org/files/ENCFF712GLE/@@download/ENCFF712GLE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF036YDI bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 265824928 ENCODE Processing Pipeline 3e5a71c45b54559f5d4fd476e4c83755 https://www.encodeproject.org/files/ENCFF036YDI/@@download/ENCFF036YDI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF741EXE bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 182082155 ENCODE Processing Pipeline cfe7116c99b3a9a49ea3704c11b833a3 https://www.encodeproject.org/files/ENCFF741EXE/@@download/ENCFF741EXE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF963XEI bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 415289512 ENCODE Processing Pipeline 39c81c99b8fcfedd8645093e8a2abb6e https://www.encodeproject.org/files/ENCFF963XEI/@@download/ENCFF963XEI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF535CWX bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF779XER 10490788 ENCODE Processing Pipeline e778d02f0abcb693113477ea68e82b6b https://www.encodeproject.org/files/ENCFF535CWX/@@download/ENCFF535CWX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF097GSH bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 182127748 ENCODE Processing Pipeline 832f74b2ad4f59977dd73e409f1e780f https://www.encodeproject.org/files/ENCFF097GSH/@@download/ENCFF097GSH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF751RNT bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 79921690 ENCODE Processing Pipeline af8033db9f0e7fb34c1afe7a98307a86 https://www.encodeproject.org/files/ENCFF751RNT/@@download/ENCFF751RNT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF691OYU bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 4745075 ENCODE Processing Pipeline ca4e14cc1854f91ff34e454a6bed3dc9 https://www.encodeproject.org/files/ENCFF691OYU/@@download/ENCFF691OYU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF320KLU bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 4085764 ENCODE Processing Pipeline abe75ddbfe3dac69bac78e65a2b7dc79 https://www.encodeproject.org/files/ENCFF320KLU/@@download/ENCFF320KLU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF546DTO bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF691OYU 10489640 ENCODE Processing Pipeline 041364bf6ee17b76ef15c55d6c621531 https://www.encodeproject.org/files/ENCFF546DTO/@@download/ENCFF546DTO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF649DVU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF546AYN 648678 ENCODE Processing Pipeline d2bd86cdb586752b12849232681ab34c https://www.encodeproject.org/files/ENCFF649DVU/@@download/ENCFF649DVU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF590BFM bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 175667312 ENCODE Processing Pipeline 0cb83c8fc3f23eee37db93b0d0e946f1 https://www.encodeproject.org/files/ENCFF590BFM/@@download/ENCFF590BFM.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF268ICD bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 265404242 ENCODE Processing Pipeline bcdda08cab1072d228a86b86bb2b264b https://www.encodeproject.org/files/ENCFF268ICD/@@download/ENCFF268ICD.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF543LBW bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 170010366 ENCODE Processing Pipeline 744ddacc7915ee03ce97a5f1211b630d https://www.encodeproject.org/files/ENCFF543LBW/@@download/ENCFF543LBW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF076KIG bed narrowPeak peaks and background as input for IDR ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 5086973 ENCODE Processing Pipeline 7e09cebd959d89d102a78ae21fde74de https://www.encodeproject.org/files/ENCFF076KIG/@@download/ENCFF076KIG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF546AYN bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF076KIG, ENCFF320KLU, ENCFF419RSJ, ENCFF691OYU 301563 ENCODE Processing Pipeline 30928ae9f0f90f5d29c0a05ba8245e3c https://www.encodeproject.org/files/ENCFF546AYN/@@download/ENCFF546AYN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF766HMR bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 417287051 ENCODE Processing Pipeline f05cc21171dea9f6916624786724b5e1 https://www.encodeproject.org/files/ENCFF766HMR/@@download/ENCFF766HMR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF533GJQ bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF320KLU 9593712 ENCODE Processing Pipeline 7c51755e5787a23d8eb8be5bdceffbd8 https://www.encodeproject.org/files/ENCFF533GJQ/@@download/ENCFF533GJQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF049SEK bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF076KIG 12966538 ENCODE Processing Pipeline 29b6171dc40ca469036072a8f32be4b6 https://www.encodeproject.org/files/ENCFF049SEK/@@download/ENCFF049SEK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000NWO bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NXA 446351594 Richard Myers, HAIB 445b6a8ad57ecd0f738a45dd315d2a71 https://www.encodeproject.org/files/ENCFF000NWO/@@download/ENCFF000NWO.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NWP bigBed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXI 501789 Richard Myers, HAIB e04095acd09e023c6dabc4eb709356f2 https://www.encodeproject.org/files/ENCFF000NWP/@@download/ENCFF000NWP.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NWQ bigBed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXJ 351826 Richard Myers, HAIB 196739b782dfbe669a059ad94e1d1589 https://www.encodeproject.org/files/ENCFF000NWQ/@@download/ENCFF000NWQ.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NWR bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NXC 782651201 Richard Myers, HAIB e2756e0740c6f7524dd7e494512f995f https://www.encodeproject.org/files/ENCFF000NWR/@@download/ENCFF000NWR.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NWS bigWig raw signal ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 11234028 Richard Myers, HAIB c7a49123e55104b113589646d8736f4a https://www.encodeproject.org/files/ENCFF000NWS/@@download/ENCFF000NWS.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NWU bigWig raw signal ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 17121973 Richard Myers, HAIB 686f63e1eec2e91fff8ae2948eb63fe2 https://www.encodeproject.org/files/ENCFF000NWU/@@download/ENCFF000NWU.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NXA fastq reads ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 395056731 Richard Myers, HAIB 1ca98854b5773e20d8d1ecf4559b1f4b https://www.encodeproject.org/files/ENCFF000NXA/@@download/ENCFF000NXA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NXC fastq reads ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 741553023 Richard Myers, HAIB 59927ab7d09d1f0c8adc231c0f76123c https://www.encodeproject.org/files/ENCFF000NXC/@@download/ENCFF000NXC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001TXI bed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 287783 Richard Myers, HAIB 87aafa7d49a5ba352c1c578c89643d1f https://www.encodeproject.org/files/ENCFF001TXI/@@download/ENCFF001TXI.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TXJ bed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 165195 Richard Myers, HAIB 6279041a2ad3b6324f65adb1e89a026f https://www.encodeproject.org/files/ENCFF001TXJ/@@download/ENCFF001TXJ.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CHC bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 341744 ENCODE Consortium Analysis Working Group 54631587162d50440ad8b95c7c7e85c5 https://www.encodeproject.org/files/ENCFF002CHC/@@download/ENCFF002CHC.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF217YUT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHC 782365 ENCODE Consortium b742ab5eaf6250388d9dff122375fdff https://www.encodeproject.org/files/ENCFF217YUT/@@download/ENCFF217YUT.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF105SCN bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF643CGH 516739571 ENCODE Processing Pipeline bd30c26e0f36fe58b150366a6eee4bf3 https://www.encodeproject.org/files/ENCFF105SCN/@@download/ENCFF105SCN.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF510YAI bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF643CGH 287797489 ENCODE Processing Pipeline 002600767b501270177d2fd821d863db https://www.encodeproject.org/files/ENCFF510YAI/@@download/ENCFF510YAI.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF405ENX bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF643CGH 937125696 ENCODE Processing Pipeline c23c6492a2b55e5bd573212c45500309 https://www.encodeproject.org/files/ENCFF405ENX/@@download/ENCFF405ENX.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF476CBG bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF643CGH 412043094 ENCODE Processing Pipeline d048bf26f111ee7328da127541ae1f38 https://www.encodeproject.org/files/ENCFF476CBG/@@download/ENCFF476CBG.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF012YAB bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF807MUK 516623832 ENCODE Processing Pipeline 3e9f3955536837049220ae4a582dc106 https://www.encodeproject.org/files/ENCFF012YAB/@@download/ENCFF012YAB.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF359HKJ bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF807MUK 936089123 ENCODE Processing Pipeline 000ea03e8831b467297741b1579343fc https://www.encodeproject.org/files/ENCFF359HKJ/@@download/ENCFF359HKJ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF651UZJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF807MUK 284898385 ENCODE Processing Pipeline 2dcece7fa644c33b3c9ec91a7faf6918 https://www.encodeproject.org/files/ENCFF651UZJ/@@download/ENCFF651UZJ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF659SUJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF807MUK 408553237 ENCODE Processing Pipeline 0b9a0c159415516cfd2c386b184fc260 https://www.encodeproject.org/files/ENCFF659SUJ/@@download/ENCFF659SUJ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF972LZR bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 183493900 ENCODE Processing Pipeline b87b5a74db12ad5563bece17cbf8a22f https://www.encodeproject.org/files/ENCFF972LZR/@@download/ENCFF972LZR.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF306VZV bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 309767740 ENCODE Processing Pipeline b0baaba7aa53414114762eb526a65b6c https://www.encodeproject.org/files/ENCFF306VZV/@@download/ENCFF306VZV.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF099YNL bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 244480755 ENCODE Processing Pipeline b146d7854dfdd6e982ff6b120d519ed8 https://www.encodeproject.org/files/ENCFF099YNL/@@download/ENCFF099YNL.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF128TCK bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 319444926 ENCODE Processing Pipeline 69f27c133ac66e2afb8b1926a8272c0f https://www.encodeproject.org/files/ENCFF128TCK/@@download/ENCFF128TCK.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF923AZM bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 452512456 ENCODE Processing Pipeline 272ef5b82356db22bec167d19ef48d19 https://www.encodeproject.org/files/ENCFF923AZM/@@download/ENCFF923AZM.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF373KCT bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 372488881 ENCODE Processing Pipeline b28e55cd97405791849e7edf5698cd14 https://www.encodeproject.org/files/ENCFF373KCT/@@download/ENCFF373KCT.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF792NPH bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 3971799 ENCODE Processing Pipeline df1194e5e9d9fba66ffcb9b10889d96b https://www.encodeproject.org/files/ENCFF792NPH/@@download/ENCFF792NPH.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF687SGU bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 4917102 ENCODE Processing Pipeline 6d27c319f535e3e0f0b25cd69aa097f0 https://www.encodeproject.org/files/ENCFF687SGU/@@download/ENCFF687SGU.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF747WVH bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF792NPH 8794841 ENCODE Processing Pipeline 1e61b85f4b8db26b8ece738a850fe4c1 https://www.encodeproject.org/files/ENCFF747WVH/@@download/ENCFF747WVH.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF385QJP bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 4235606 ENCODE Processing Pipeline 706dd0c594eeb290fa808a7739b0c7e1 https://www.encodeproject.org/files/ENCFF385QJP/@@download/ENCFF385QJP.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF214EGO bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF385QJP 10081503 ENCODE Processing Pipeline 90655e5e75fb2cdf83f2abad32edbd01 https://www.encodeproject.org/files/ENCFF214EGO/@@download/ENCFF214EGO.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF921HDK bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF687SGU 10724607 ENCODE Processing Pipeline 5c7ed3e6859a49ce772de6b07472dc94 https://www.encodeproject.org/files/ENCFF921HDK/@@download/ENCFF921HDK.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF151PNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF958GXF 660225 ENCODE Processing Pipeline 7732aaadcd7532128a9c804372b7c374 https://www.encodeproject.org/files/ENCFF151PNI/@@download/ENCFF151PNI.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF131JIX bed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF385QJP, ENCFF419RSJ, ENCFF687SGU, ENCFF792NPH 302801 ENCODE Processing Pipeline 33c168bab17da8e2d591665919dd7c09 https://www.encodeproject.org/files/ENCFF131JIX/@@download/ENCFF131JIX.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF254YDX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF131JIX 569008 ENCODE Processing Pipeline c8648a17dcbed263df674d58c2399371 https://www.encodeproject.org/files/ENCFF254YDX/@@download/ENCFF254YDX.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF958GXF bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF385QJP, ENCFF419RSJ, ENCFF687SGU, ENCFF792NPH 368392 ENCODE Processing Pipeline 1435a07403e10acf4e6191d5d35e43d5 https://www.encodeproject.org/files/ENCFF958GXF/@@download/ENCFF958GXF.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF437KRD bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 456402743 ENCODE Processing Pipeline 115fbff273448432eb4bf54cacf66954 https://www.encodeproject.org/files/ENCFF437KRD/@@download/ENCFF437KRD.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF158YLU bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 241475091 ENCODE Processing Pipeline 981811cba73402a0deaef18344a2bf23 https://www.encodeproject.org/files/ENCFF158YLU/@@download/ENCFF158YLU.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF951TLZ bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 3978804 ENCODE Processing Pipeline 331ed73930e4199b54d6e1ee1cfaac72 https://www.encodeproject.org/files/ENCFF951TLZ/@@download/ENCFF951TLZ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF653YGB bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 336800889 ENCODE Processing Pipeline 47ae39cd1962054362222355fc0609d4 https://www.encodeproject.org/files/ENCFF653YGB/@@download/ENCFF653YGB.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF975FYL bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 373260938 ENCODE Processing Pipeline 1c7777fd8a12d8690f218030097a3b1e https://www.encodeproject.org/files/ENCFF975FYL/@@download/ENCFF975FYL.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF328YWR bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF980AUY 10123857 ENCODE Processing Pipeline 0c7548a5013a83aaa3b4256eb0cdeea7 https://www.encodeproject.org/files/ENCFF328YWR/@@download/ENCFF328YWR.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF396NJG bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 329324652 ENCODE Processing Pipeline 380811e82c9c082d37681b097421eaee https://www.encodeproject.org/files/ENCFF396NJG/@@download/ENCFF396NJG.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF598MLP bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 187536656 ENCODE Processing Pipeline 27143670340cb59afa2c9a1d2f498c98 https://www.encodeproject.org/files/ENCFF598MLP/@@download/ENCFF598MLP.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF980AUY bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 4272041 ENCODE Processing Pipeline b08b9732fcd3e20e5a40be4fd0ac8b01 https://www.encodeproject.org/files/ENCFF980AUY/@@download/ENCFF980AUY.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF402EQI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF811FYS 563172 ENCODE Processing Pipeline 98952b874cd796b3345e494862d7e98c https://www.encodeproject.org/files/ENCFF402EQI/@@download/ENCFF402EQI.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF328QLX bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099ZTD, ENCFF951TLZ, ENCFF980AUY 367975 ENCODE Processing Pipeline cff7dbd079130eb4d37ffab592deaa84 https://www.encodeproject.org/files/ENCFF328QLX/@@download/ENCFF328QLX.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF099ZTD bed narrowPeak peaks and background as input for IDR ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 4920960 ENCODE Processing Pipeline a5652b7819332660bd0351cca77e9781 https://www.encodeproject.org/files/ENCFF099ZTD/@@download/ENCFF099ZTD.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF303ARN bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF951TLZ 8807842 ENCODE Processing Pipeline 63085a52e94ce95018bfa0215c0d68f5 https://www.encodeproject.org/files/ENCFF303ARN/@@download/ENCFF303ARN.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF073OTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328QLX 661644 ENCODE Processing Pipeline 99777cb92fd506212b541ffc795eae06 https://www.encodeproject.org/files/ENCFF073OTI/@@download/ENCFF073OTI.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF088IZI bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF099ZTD 10732602 ENCODE Processing Pipeline 3f3ffc59fa87a5250b255bae31769a49 https://www.encodeproject.org/files/ENCFF088IZI/@@download/ENCFF088IZI.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF811FYS bed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099ZTD, ENCFF951TLZ, ENCFF980AUY 297618 ENCODE Processing Pipeline 0b59fe5860fe163187f5ac959f6d0a5e https://www.encodeproject.org/files/ENCFF811FYS/@@download/ENCFF811FYS.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF639NST fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF377QZD 3177224776 Michael Snyder, Stanford 37fd949c94b2d5a740550238a4cf5daa SRA:SRR6214165 https://www.encodeproject.org/files/ENCFF639NST/@@download/ENCFF639NST.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF571OVI fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF370YRD 2535833905 Michael Snyder, Stanford 7a806918818fb8d2c24fc1f8b084222f SRA:SRR6214166 https://www.encodeproject.org/files/ENCFF571OVI/@@download/ENCFF571OVI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF370YRD fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF571OVI 3050836630 Michael Snyder, Stanford da5be69acf0214792208a805d81f7c70 SRA:SRR6214166 https://www.encodeproject.org/files/ENCFF370YRD/@@download/ENCFF370YRD.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF377QZD fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF639NST 2663775495 Michael Snyder, Stanford 8af46243d1b9223a7bc8ed70e2e717a6 SRA:SRR6214165 https://www.encodeproject.org/files/ENCFF377QZD/@@download/ENCFF377QZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF938PVW bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF807MUK 5556176978 ENCODE Processing Pipeline c4325e9cdc046639ccca72a92c3ecf2f https://www.encodeproject.org/files/ENCFF938PVW/@@download/ENCFF938PVW.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF837JGZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF807MUK 4333350845 ENCODE Processing Pipeline ad537d4b37d903472e2ccfa361b53dea https://www.encodeproject.org/files/ENCFF837JGZ/@@download/ENCFF837JGZ.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF673BXM bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF643CGH 4338868543 ENCODE Processing Pipeline 91ad0057d578ec9100683a26d2e5edf0 https://www.encodeproject.org/files/ENCFF673BXM/@@download/ENCFF673BXM.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF283EIU bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF643CGH 5566169863 ENCODE Processing Pipeline db118132b098113cfe8cb3f18d538be7 https://www.encodeproject.org/files/ENCFF283EIU/@@download/ENCFF283EIU.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF771QRJ bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF807MUK 5766861632 ENCODE Processing Pipeline 1fbb65182d0cb50ee219a5ed5692e39a https://www.encodeproject.org/files/ENCFF771QRJ/@@download/ENCFF771QRJ.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF285GPK bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF807MUK 4628792353 ENCODE Processing Pipeline 7866e6fd77504b5d638a1f87558e607b https://www.encodeproject.org/files/ENCFF285GPK/@@download/ENCFF285GPK.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF906JCA bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF643CGH 5778952802 ENCODE Processing Pipeline aa3d114ccb8fefc70240a9cf7ecb70e5 https://www.encodeproject.org/files/ENCFF906JCA/@@download/ENCFF906JCA.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF622GDZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF643CGH 4634547922 ENCODE Processing Pipeline 94f227e953313b234b48c817bd4f3a3e https://www.encodeproject.org/files/ENCFF622GDZ/@@download/ENCFF622GDZ.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF154UVB bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 1096189685 ENCODE Processing Pipeline 905e1317f6ad737666ab4fd351d90c81 https://www.encodeproject.org/files/ENCFF154UVB/@@download/ENCFF154UVB.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF471ZBT bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF888XOT 11306339 ENCODE Processing Pipeline f4087bcbb9edffb4f543d02987489404 https://www.encodeproject.org/files/ENCFF471ZBT/@@download/ENCFF471ZBT.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF129EUE bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 1218740877 ENCODE Processing Pipeline 7504522f10556d2915c124b394797f23 https://www.encodeproject.org/files/ENCFF129EUE/@@download/ENCFF129EUE.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF795CVL bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 1316644808 ENCODE Processing Pipeline bcd7839f8e73abbf9e7a9c1e81dc2650 https://www.encodeproject.org/files/ENCFF795CVL/@@download/ENCFF795CVL.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF407DVX bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 1406455826 ENCODE Processing Pipeline 0d20e17653002e6c7c275161d4f9ccac https://www.encodeproject.org/files/ENCFF407DVX/@@download/ENCFF407DVX.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF023CKP bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 2203821467 ENCODE Processing Pipeline bcc309a2978afdd0ca3ea2033e76c0b9 https://www.encodeproject.org/files/ENCFF023CKP/@@download/ENCFF023CKP.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF783BUR bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 5881301 ENCODE Processing Pipeline b9f167c0b9ce714e6dd1e3bb678257d5 https://www.encodeproject.org/files/ENCFF783BUR/@@download/ENCFF783BUR.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF817XFQ bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF834GJB 11270294 ENCODE Processing Pipeline 45e593d75b97a1f33c8081c7885edb28 https://www.encodeproject.org/files/ENCFF817XFQ/@@download/ENCFF817XFQ.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF467MFZ bed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF783BUR, ENCFF834GJB, ENCFF888XOT 72692 ENCODE Processing Pipeline a409e63d13538a72c550ab8416a294d3 https://www.encodeproject.org/files/ENCFF467MFZ/@@download/ENCFF467MFZ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF834GJB bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 7111345 ENCODE Processing Pipeline 976a2465f395a5182204c72168c1152b https://www.encodeproject.org/files/ENCFF834GJB/@@download/ENCFF834GJB.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF860IXB bed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF783BUR, ENCFF834GJB, ENCFF888XOT 111070 ENCODE Processing Pipeline 18003142c000a9ddbc9550a252231c5d https://www.encodeproject.org/files/ENCFF860IXB/@@download/ENCFF860IXB.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF632AUI bigBed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF860IXB 307273 ENCODE Processing Pipeline 812abcb4b3a175bca667a11de939c2d9 https://www.encodeproject.org/files/ENCFF632AUI/@@download/ENCFF632AUI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF153FDP bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 2362451636 ENCODE Processing Pipeline cc209db7fa03cfb4a68cac82bcd0d370 https://www.encodeproject.org/files/ENCFF153FDP/@@download/ENCFF153FDP.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF888XOT bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 6126274 ENCODE Processing Pipeline 98e2c82fcc8446ecf9f30d4a366aa514 https://www.encodeproject.org/files/ENCFF888XOT/@@download/ENCFF888XOT.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF115FDF bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF783BUR 11570613 ENCODE Processing Pipeline 06ca92a218932b8ce769d06d1bd3825d https://www.encodeproject.org/files/ENCFF115FDF/@@download/ENCFF115FDF.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF512ZCS bigBed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF467MFZ 230224 ENCODE Processing Pipeline a75ec89840172033b3a8511f0bd59441 https://www.encodeproject.org/files/ENCFF512ZCS/@@download/ENCFF512ZCS.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF878QAV bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 1198725055 ENCODE Processing Pipeline 5cd3142b4a6ed20aaa8821bf16eac8bb https://www.encodeproject.org/files/ENCFF878QAV/@@download/ENCFF878QAV.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF238LQY bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 1328278139 ENCODE Processing Pipeline 8978fe04c639d5673e248c0d0f9d5f16 https://www.encodeproject.org/files/ENCFF238LQY/@@download/ENCFF238LQY.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF502QYQ bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 2359934095 ENCODE Processing Pipeline a78d1c636ff5f8050d9b746353b32b6b https://www.encodeproject.org/files/ENCFF502QYQ/@@download/ENCFF502QYQ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF227WND bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 1364176549 ENCODE Processing Pipeline 0597b709114718e896a00c89d6d28335 https://www.encodeproject.org/files/ENCFF227WND/@@download/ENCFF227WND.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF911GOM bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 1886250438 ENCODE Processing Pipeline f5cf0c869d638ae928b7e0ecbcef7559 https://www.encodeproject.org/files/ENCFF911GOM/@@download/ENCFF911GOM.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF788IBU bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF635ZSK 11241953 ENCODE Processing Pipeline 8fbb9c364cb30c2a01b5ba1f058ffdbd https://www.encodeproject.org/files/ENCFF788IBU/@@download/ENCFF788IBU.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF610VCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF166FRO 305111 ENCODE Processing Pipeline c7d84d6753dcb36693066db5c5a9743f https://www.encodeproject.org/files/ENCFF610VCZ/@@download/ENCFF610VCZ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF763SSU bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 6126835 ENCODE Processing Pipeline dfc477ce4fcf5905d865702a5f6909f6 https://www.encodeproject.org/files/ENCFF763SSU/@@download/ENCFF763SSU.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF635ZSK bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 7102530 ENCODE Processing Pipeline a49bf3fe7dc78f561d83f7129d7982f8 https://www.encodeproject.org/files/ENCFF635ZSK/@@download/ENCFF635ZSK.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF166FRO bed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF044ASF, ENCFF635ZSK, ENCFF763SSU 111900 ENCODE Processing Pipeline ecdcd45712ada557b780b8561c0c71c2 https://www.encodeproject.org/files/ENCFF166FRO/@@download/ENCFF166FRO.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF498FVD bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 1306600197 ENCODE Processing Pipeline 043c0a4cfe676f4ab0bee60d61d28a95 https://www.encodeproject.org/files/ENCFF498FVD/@@download/ENCFF498FVD.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF593EHO bed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF044ASF, ENCFF635ZSK, ENCFF763SSU 71564 ENCODE Processing Pipeline b44f16e0ecc26b10f1184749715aed2d https://www.encodeproject.org/files/ENCFF593EHO/@@download/ENCFF593EHO.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF625VMI bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF763SSU 11286378 ENCODE Processing Pipeline b4e7fb2e1091126d27963f645bfbfd22 https://www.encodeproject.org/files/ENCFF625VMI/@@download/ENCFF625VMI.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF042RTT bigBed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF593EHO 226554 ENCODE Processing Pipeline 7716ddfa16be2eb5847fbd3e5d880781 https://www.encodeproject.org/files/ENCFF042RTT/@@download/ENCFF042RTT.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF044ASF bed narrowPeak peaks and background as input for IDR ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 5883861 ENCODE Processing Pipeline 72c233681b4110fc7b0b05c604de3f7f https://www.encodeproject.org/files/ENCFF044ASF/@@download/ENCFF044ASF.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF220ZRE bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF044ASF 11555579 ENCODE Processing Pipeline 431d416c7dae1a5f8697057b510f08a9 https://www.encodeproject.org/files/ENCFF220ZRE/@@download/ENCFF220ZRE.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF000WER bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFK 376600899 Michael Snyder, Stanford 1ad1afd1bcddc44697172e5f47f1cb3a https://www.encodeproject.org/files/ENCFF000WER/@@download/ENCFF000WER.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WES bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFJ 373960952 Michael Snyder, Stanford b60b32a66ab8fff7278f07b16a156fab https://www.encodeproject.org/files/ENCFF000WES/@@download/ENCFF000WES.bam hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WET bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFM 1058410 Michael Snyder, Stanford 85c31803504ebbd0215302d8e8a19088 https://www.encodeproject.org/files/ENCFF000WET/@@download/ENCFF000WET.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WEU bigWig signal ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 276536300 Michael Snyder, Stanford 1ab0ebc91392ff5d01b8fa5239b56c81 https://www.encodeproject.org/files/ENCFF000WEU/@@download/ENCFF000WEU.bigWig hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000WFJ fastq reads ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 868439521 Michael Snyder, Stanford c48425e81a0f8c63920f4d5f675b1a5c https://www.encodeproject.org/files/ENCFF000WFJ/@@download/ENCFF000WFJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000WFK fastq reads ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 998951452 Michael Snyder, Stanford fcbc281996aaa2e1c0c314632966bc3d https://www.encodeproject.org/files/ENCFF000WFK/@@download/ENCFF000WFK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, inconsistent control read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001VFM bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 443807 Michael Snyder, Stanford c2c36ab998bd7024678e17582e8852dc https://www.encodeproject.org/files/ENCFF001VFM/@@download/ENCFF001VFM.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CPP bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 171002 ENCODE Consortium Analysis Working Group 06b4dbcce351dd97c60552789fac7e28 https://www.encodeproject.org/files/ENCFF002CPP/@@download/ENCFF002CPP.bed.gz hg19 archived low read length, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF531XKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPP 496109 ENCODE Consortium fc85921cda09fce9e643aca3c3042e76 https://www.encodeproject.org/files/ENCFF531XKQ/@@download/ENCFF531XKQ.bigBed hg19 archived low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF548FQS bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF643CGH 946131936 ENCODE Processing Pipeline 30759a47c71ab553772731c768bcd8d4 https://www.encodeproject.org/files/ENCFF548FQS/@@download/ENCFF548FQS.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF575BMM bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF643CGH 1072586624 ENCODE Processing Pipeline 348ddba49ec9c33205529927b60e60a7 https://www.encodeproject.org/files/ENCFF575BMM/@@download/ENCFF575BMM.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF145QDZ bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF643CGH 568780266 ENCODE Processing Pipeline 3de5d361afbda850464d5602435d5321 https://www.encodeproject.org/files/ENCFF145QDZ/@@download/ENCFF145QDZ.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF453OOT bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF643CGH 614922183 ENCODE Processing Pipeline c1f52b93231090d956737dbeac379260 https://www.encodeproject.org/files/ENCFF453OOT/@@download/ENCFF453OOT.bam GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF679KFQ bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF807MUK 1067627497 ENCODE Processing Pipeline fca21575ebd30a3d5decde268ee31d62 https://www.encodeproject.org/files/ENCFF679KFQ/@@download/ENCFF679KFQ.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF423HKM bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF807MUK 566953412 ENCODE Processing Pipeline ae3d88ed9efdaced69ef9f81553b8cf9 https://www.encodeproject.org/files/ENCFF423HKM/@@download/ENCFF423HKM.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF981NUX bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF807MUK 941720744 ENCODE Processing Pipeline a6993ba171c2a1d088aedb15b6113eda https://www.encodeproject.org/files/ENCFF981NUX/@@download/ENCFF981NUX.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF416FSY bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF807MUK 613305456 ENCODE Processing Pipeline dd418e75cf6c5ffa472ba58936de1ebb https://www.encodeproject.org/files/ENCFF416FSY/@@download/ENCFF416FSY.bam hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF211SUY bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 4975111 ENCODE Processing Pipeline 08b54d16f1245077578ad8d442e24ccc https://www.encodeproject.org/files/ENCFF211SUY/@@download/ENCFF211SUY.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF550SHJ bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF211SUY 10973153 ENCODE Processing Pipeline 8187a5009b3e77e931e1a7db6e618fed https://www.encodeproject.org/files/ENCFF550SHJ/@@download/ENCFF550SHJ.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF494DOZ bed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211SUY, ENCFF234PNC, ENCFF318RHH 94983 ENCODE Processing Pipeline af713cd9a66c0c8b0e08bc1d92e129e2 https://www.encodeproject.org/files/ENCFF494DOZ/@@download/ENCFF494DOZ.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF400YNR bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 171700386 ENCODE Processing Pipeline e3593fc42b8c1956006370a1e9f1bc7c https://www.encodeproject.org/files/ENCFF400YNR/@@download/ENCFF400YNR.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF016PPW bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF318RHH 10023142 ENCODE Processing Pipeline a20e1fe1a75978adf1ddd9c3129f6b66 https://www.encodeproject.org/files/ENCFF016PPW/@@download/ENCFF016PPW.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF957ZZK bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 254943703 ENCODE Processing Pipeline 3642a09b676a06eff7e41b0ea7884c63 https://www.encodeproject.org/files/ENCFF957ZZK/@@download/ENCFF957ZZK.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF826MXI bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 75431254 ENCODE Processing Pipeline 8219bfc775076c47ac689441419a7eaa https://www.encodeproject.org/files/ENCFF826MXI/@@download/ENCFF826MXI.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF598FSR bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 196957766 ENCODE Processing Pipeline 8216076a5563dd66db8144afdf196456 https://www.encodeproject.org/files/ENCFF598FSR/@@download/ENCFF598FSR.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF133SDO bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 435622910 ENCODE Processing Pipeline 19cebd86fb8fabad4f5bf131f4b6f650 https://www.encodeproject.org/files/ENCFF133SDO/@@download/ENCFF133SDO.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF318RHH bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 4125263 ENCODE Processing Pipeline 5e9262a0cb34be36eda68e27d952dc6e https://www.encodeproject.org/files/ENCFF318RHH/@@download/ENCFF318RHH.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF970MDY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF494DOZ 228392 ENCODE Processing Pipeline ceb331cb651f6f1c15d834eeb8e3d9c3 https://www.encodeproject.org/files/ENCFF970MDY/@@download/ENCFF970MDY.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF977DSU bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 164893083 ENCODE Processing Pipeline 6408e1810259b813b074cc876cfa5c6f https://www.encodeproject.org/files/ENCFF977DSU/@@download/ENCFF977DSU.bigWig hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF234PNC bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 4079736 ENCODE Processing Pipeline e0b33802feebc9eead970443f79cf85f https://www.encodeproject.org/files/ENCFF234PNC/@@download/ENCFF234PNC.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF604SXH bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF234PNC 10015543 ENCODE Processing Pipeline 0751ab640d0c5b320e6f2f5110eb48da https://www.encodeproject.org/files/ENCFF604SXH/@@download/ENCFF604SXH.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF503DJE bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 75752666 ENCODE Processing Pipeline c1bb9583449ff02af924b81559a29b13 https://www.encodeproject.org/files/ENCFF503DJE/@@download/ENCFF503DJE.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF403FUL bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 171774662 ENCODE Processing Pipeline 9ef05b45eb2c67dbfda3fdc4d1b73e9e https://www.encodeproject.org/files/ENCFF403FUL/@@download/ENCFF403FUL.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF950RYY bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 432564084 ENCODE Processing Pipeline 1e1e68fc1fd10aab615c8f440ebd9f5f https://www.encodeproject.org/files/ENCFF950RYY/@@download/ENCFF950RYY.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF828PQY bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF876ANR 9906825 ENCODE Processing Pipeline 032a45dbeb8afcc92edafae35086505f https://www.encodeproject.org/files/ENCFF828PQY/@@download/ENCFF828PQY.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF014RBU bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211SUY, ENCFF234PNC, ENCFF318RHH 135992 ENCODE Processing Pipeline 22bf3b30438a5ab0a401f82cf845218f https://www.encodeproject.org/files/ENCFF014RBU/@@download/ENCFF014RBU.bed.gz hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF961OQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014RBU 292349 ENCODE Processing Pipeline d1d9a750d4e3a7685a21d21bc7ca21eb https://www.encodeproject.org/files/ENCFF961OQC/@@download/ENCFF961OQC.bigBed hg19 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF876ANR bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 4027629 ENCODE Processing Pipeline 00460a10d6b21f0e18119408f314958a https://www.encodeproject.org/files/ENCFF876ANR/@@download/ENCFF876ANR.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF191DAH bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF202BET 10035639 ENCODE Processing Pipeline 97b62a368bcdf472fbcceb94ba651cb7 https://www.encodeproject.org/files/ENCFF191DAH/@@download/ENCFF191DAH.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065PEA bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 164122600 ENCODE Processing Pipeline af516ed8d1714f6be0e3e4193c054c52 https://www.encodeproject.org/files/ENCFF065PEA/@@download/ENCFF065PEA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF760UNU bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF271YEG 10976150 ENCODE Processing Pipeline a593db2669f135681859eb4dabfa5c45 https://www.encodeproject.org/files/ENCFF760UNU/@@download/ENCFF760UNU.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF916UJD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF039SJV 229326 ENCODE Processing Pipeline b12cc02180acaf0fd9371ed8107581fd https://www.encodeproject.org/files/ENCFF916UJD/@@download/ENCFF916UJD.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF063QJC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF923CHO 337647 ENCODE Processing Pipeline 6d6748430798663982f4d51600f92482 https://www.encodeproject.org/files/ENCFF063QJC/@@download/ENCFF063QJC.bigBed GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF352EXA bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 255221583 ENCODE Processing Pipeline ccb740cdf922e814fc138d4df04ae099 https://www.encodeproject.org/files/ENCFF352EXA/@@download/ENCFF352EXA.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF497BFW bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 198025363 ENCODE Processing Pipeline 228b2d53b8590cf4eaee7603b53f49d1 https://www.encodeproject.org/files/ENCFF497BFW/@@download/ENCFF497BFW.bigWig GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF202BET bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 4124595 ENCODE Processing Pipeline 1e370665ae7e2c65bc6e86efc942fab3 https://www.encodeproject.org/files/ENCFF202BET/@@download/ENCFF202BET.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF923CHO bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF202BET, ENCFF271YEG, ENCFF419RSJ, ENCFF876ANR 132521 ENCODE Processing Pipeline f9f7667bb470ffd1e8c1277d1f30472a https://www.encodeproject.org/files/ENCFF923CHO/@@download/ENCFF923CHO.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF271YEG bed narrowPeak peaks and background as input for IDR ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 4974598 ENCODE Processing Pipeline 86e9f78de015712579aa085e846eea07 https://www.encodeproject.org/files/ENCFF271YEG/@@download/ENCFF271YEG.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF039SJV bed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF202BET, ENCFF271YEG, ENCFF419RSJ, ENCFF876ANR 96005 ENCODE Processing Pipeline 1f41e5ba38daf03682d74731d8316267 https://www.encodeproject.org/files/ENCFF039SJV/@@download/ENCFF039SJV.bed.gz GRCh38 released low read length, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OGB bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OGQ 792319278 Richard Myers, HAIB 67e9808b399532c01630db145a565521 https://www.encodeproject.org/files/ENCFF000OGB/@@download/ENCFF000OGB.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGD bigBed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZI 822061 Richard Myers, HAIB d3d860935cfa9f8ed7b6b28e5f615353 https://www.encodeproject.org/files/ENCFF000OGD/@@download/ENCFF000OGD.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGE bigBed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZJ 635602 Richard Myers, HAIB 575cb826cade0e811f676ac8865d9de5 https://www.encodeproject.org/files/ENCFF000OGE/@@download/ENCFF000OGE.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGF bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OGN 820790488 Richard Myers, HAIB 1b6def9e8e72152e8350406f9314ac2b https://www.encodeproject.org/files/ENCFF000OGF/@@download/ENCFF000OGF.bam hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGG bigWig raw signal ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 30194563 Richard Myers, HAIB 01ede430aac7c1e7f969ecdb4e83e63b https://www.encodeproject.org/files/ENCFF000OGG/@@download/ENCFF000OGG.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OGI bigWig raw signal ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 19316080 Richard Myers, HAIB 282960b8cac6321a40183e53ac4a57c9 https://www.encodeproject.org/files/ENCFF000OGI/@@download/ENCFF000OGI.bigWig hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OGN fastq reads ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 828504672 Richard Myers, HAIB 4ec5c632100728caab7e175b16631bbf https://www.encodeproject.org/files/ENCFF000OGN/@@download/ENCFF000OGN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OGQ fastq reads ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1032108981 Richard Myers, HAIB a27bb1ed7df4356debf9ecf49032117c https://www.encodeproject.org/files/ENCFF000OGQ/@@download/ENCFF000OGQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TZI bed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 540658 Richard Myers, HAIB ba4995bf149ee17acb834557bc569e36 https://www.encodeproject.org/files/ENCFF001TZI/@@download/ENCFF001TZI.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TZJ bed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 375898 Richard Myers, HAIB f1181b77b5074e3124fc989d4287f0cf https://www.encodeproject.org/files/ENCFF001TZJ/@@download/ENCFF001TZJ.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002CHZ bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 395086 ENCODE Consortium Analysis Working Group 872fa752845c6d02b3cb1d6ca221bf1f https://www.encodeproject.org/files/ENCFF002CHZ/@@download/ENCFF002CHZ.bed.gz hg19 archived low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF709EWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHZ 874998 ENCODE Consortium 8116c50b3b0b87ab4bd9d8ec2b15d90a https://www.encodeproject.org/files/ENCFF709EWV/@@download/ENCFF709EWV.bigBed hg19 archived low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF136IUN bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF643CGH 1264329142 ENCODE Processing Pipeline 4d8a2285a7ee4e8b3579ddd8047cf722 https://www.encodeproject.org/files/ENCFF136IUN/@@download/ENCFF136IUN.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF101LKK bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF643CGH 532824893 ENCODE Processing Pipeline 74b843c4f46349b000a06dd94edc8cfb https://www.encodeproject.org/files/ENCFF101LKK/@@download/ENCFF101LKK.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF291PCM bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF643CGH 650554870 ENCODE Processing Pipeline 9381f9d76c2b11ead61f24eab4aab760 https://www.encodeproject.org/files/ENCFF291PCM/@@download/ENCFF291PCM.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF713RPY bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF643CGH 1072184432 ENCODE Processing Pipeline b5f1615e2e8782d9f6dead86530ca24f https://www.encodeproject.org/files/ENCFF713RPY/@@download/ENCFF713RPY.bam GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF208RHL bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF807MUK 532468255 ENCODE Processing Pipeline 065b8e34bfdb60de3d20275dbd23fa91 https://www.encodeproject.org/files/ENCFF208RHL/@@download/ENCFF208RHL.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF874QHT bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF807MUK 1261345062 ENCODE Processing Pipeline a403f3e32a56a4e13677b243c32f1849 https://www.encodeproject.org/files/ENCFF874QHT/@@download/ENCFF874QHT.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF766QXX bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF807MUK 1069286831 ENCODE Processing Pipeline 5f2cab5088738e98f2548898dcc07724 https://www.encodeproject.org/files/ENCFF766QXX/@@download/ENCFF766QXX.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF404XBY bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF807MUK 645855411 ENCODE Processing Pipeline 07d739cd1033e6c6ed6602cb95f7d507 https://www.encodeproject.org/files/ENCFF404XBY/@@download/ENCFF404XBY.bam hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF064KJG bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 511887188 ENCODE Processing Pipeline 176dc53c53de7fdfed7bd67888728c50 https://www.encodeproject.org/files/ENCFF064KJG/@@download/ENCFF064KJG.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF529XRP bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 418579808 ENCODE Processing Pipeline 9d86f961ad7bd0f93695ec6337572510 https://www.encodeproject.org/files/ENCFF529XRP/@@download/ENCFF529XRP.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF150DMC bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 236373892 ENCODE Processing Pipeline ebb8d7cd25bad8f43093798b0da2b148 https://www.encodeproject.org/files/ENCFF150DMC/@@download/ENCFF150DMC.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF990QOO bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 741465876 ENCODE Processing Pipeline dd7067538897be10485fe1bcf80d739f https://www.encodeproject.org/files/ENCFF990QOO/@@download/ENCFF990QOO.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF126FJP bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 267111452 ENCODE Processing Pipeline c7515aa5be910a7e925a8f462c2236cc https://www.encodeproject.org/files/ENCFF126FJP/@@download/ENCFF126FJP.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF481DWO bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 595686172 ENCODE Processing Pipeline 14131580c86854f071e4feb435b5550a https://www.encodeproject.org/files/ENCFF481DWO/@@download/ENCFF481DWO.bigWig GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF812GBT bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 4506878 ENCODE Processing Pipeline 4549e771a064f914cea14014408e184d https://www.encodeproject.org/files/ENCFF812GBT/@@download/ENCFF812GBT.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF875ULM bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 4572538 ENCODE Processing Pipeline fe487be9d37d9680a1b3693d96f7ab0c https://www.encodeproject.org/files/ENCFF875ULM/@@download/ENCFF875ULM.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF503SNB bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 5734784 ENCODE Processing Pipeline 2badee84cdd69119a51572cfefd82bae https://www.encodeproject.org/files/ENCFF503SNB/@@download/ENCFF503SNB.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF755SOA bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503SNB 13496827 ENCODE Processing Pipeline b8ab8ce6c8d4d67349ca04c1b1551fa0 https://www.encodeproject.org/files/ENCFF755SOA/@@download/ENCFF755SOA.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF176ILA bed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF503SNB, ENCFF812GBT, ENCFF875ULM 389410 ENCODE Processing Pipeline f7630a6310961c25cd50f5a644fbdab8 https://www.encodeproject.org/files/ENCFF176ILA/@@download/ENCFF176ILA.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF210DFF bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF812GBT 10242221 ENCODE Processing Pipeline fbfa9b947a1b8fd3e34c5c0272490863 https://www.encodeproject.org/files/ENCFF210DFF/@@download/ENCFF210DFF.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF068NGM bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF875ULM 10619825 ENCODE Processing Pipeline b90a14d0af554f78e4ef742dc4e8c696 https://www.encodeproject.org/files/ENCFF068NGM/@@download/ENCFF068NGM.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF768VSH bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF503SNB, ENCFF812GBT, ENCFF875ULM 457695 ENCODE Processing Pipeline 9edaafcabc15b0befeed308e57dffb37 https://www.encodeproject.org/files/ENCFF768VSH/@@download/ENCFF768VSH.bed.gz GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF855GNR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF176ILA 711529 ENCODE Processing Pipeline 75ae222188decdf5c50a1356e4c70908 https://www.encodeproject.org/files/ENCFF855GNR/@@download/ENCFF855GNR.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF525ZKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF768VSH 969626 ENCODE Processing Pipeline dd9f21376104ce049407b079d62b9185 https://www.encodeproject.org/files/ENCFF525ZKB/@@download/ENCFF525ZKB.bigBed GRCh38 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF005LNQ bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 494051492 ENCODE Processing Pipeline 60f51a47a046491607032ba71ad88e7a https://www.encodeproject.org/files/ENCFF005LNQ/@@download/ENCFF005LNQ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF149JBH bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 239167715 ENCODE Processing Pipeline a84f06244f52303968bbe92c16765123 https://www.encodeproject.org/files/ENCFF149JBH/@@download/ENCFF149JBH.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF418ONJ bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 398680765 ENCODE Processing Pipeline 32fc112ee7de73ed9e20e9e4fde21067 https://www.encodeproject.org/files/ENCFF418ONJ/@@download/ENCFF418ONJ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF849WCS bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 769635948 ENCODE Processing Pipeline 9100b61a7237b5ac7a8cd99681b16cc5 https://www.encodeproject.org/files/ENCFF849WCS/@@download/ENCFF849WCS.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF914XAX bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 273299419 ENCODE Processing Pipeline bd1a2068ec1180d8e81c2ec5499a0689 https://www.encodeproject.org/files/ENCFF914XAX/@@download/ENCFF914XAX.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF527WDJ bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 586538392 ENCODE Processing Pipeline 9c0258e701e37d6e73e848f3c479bb4e https://www.encodeproject.org/files/ENCFF527WDJ/@@download/ENCFF527WDJ.bigWig hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF814CGS bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 4455185 ENCODE Processing Pipeline 782d288d4ded497bdcde03c923300814 https://www.encodeproject.org/files/ENCFF814CGS/@@download/ENCFF814CGS.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF571QYV bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 5635233 ENCODE Processing Pipeline b307ab7f0b2db42886bc79c0db2fbec3 https://www.encodeproject.org/files/ENCFF571QYV/@@download/ENCFF571QYV.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF636VGY bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF734EMB 10610770 ENCODE Processing Pipeline 8cdef93b5a37faac4721462bbb155302 https://www.encodeproject.org/files/ENCFF636VGY/@@download/ENCFF636VGY.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF009MGH bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF571QYV 11285140 ENCODE Processing Pipeline a4df1ccf3816eb6f21c9196a16a2e376 https://www.encodeproject.org/files/ENCFF009MGH/@@download/ENCFF009MGH.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF734EMB bed narrowPeak peaks and background as input for IDR ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 4570713 ENCODE Processing Pipeline dcf37d805f0491b7b886ff1113be27a8 https://www.encodeproject.org/files/ENCFF734EMB/@@download/ENCFF734EMB.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF741OWY bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF814CGS 10154101 ENCODE Processing Pipeline f63aabc68d0a473f8a032fa4c0b6bf29 https://www.encodeproject.org/files/ENCFF741OWY/@@download/ENCFF741OWY.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF759PVA bed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF571QYV, ENCFF734EMB, ENCFF814CGS 357053 ENCODE Processing Pipeline b0b344ab04a7ab4a1a59472d2924da61 https://www.encodeproject.org/files/ENCFF759PVA/@@download/ENCFF759PVA.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF373OTM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF759PVA 671089 ENCODE Processing Pipeline f5357d48664fff0c7cc1d31c19b0cb44 https://www.encodeproject.org/files/ENCFF373OTM/@@download/ENCFF373OTM.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF098HEH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160WLU 780035 ENCODE Processing Pipeline ab1f87b23fb45c4e9cb4d8d48727f809 https://www.encodeproject.org/files/ENCFF098HEH/@@download/ENCFF098HEH.bigBed hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF160WLU bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF571QYV, ENCFF734EMB, ENCFF814CGS 441776 ENCODE Processing Pipeline 1de50ea947fc32b20c14525ecf1087ac https://www.encodeproject.org/files/ENCFF160WLU/@@download/ENCFF160WLU.bed.gz hg19 released low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NSJ bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NSW 856756292 Richard Myers, HAIB 0e6303469c9cb86a61f1814c21c69cb9 https://www.encodeproject.org/files/ENCFF000NSJ/@@download/ENCFF000NSJ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSK bigBed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWF 712596 Richard Myers, HAIB 9fcc7f70564a6956f3376514a69e05b0 https://www.encodeproject.org/files/ENCFF000NSK/@@download/ENCFF000NSK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSL bigBed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWG 1157078 Richard Myers, HAIB d883e03bdd98233a782858ad2785cf74 https://www.encodeproject.org/files/ENCFF000NSL/@@download/ENCFF000NSL.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSM bigWig raw signal ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 19614342 Richard Myers, HAIB f090249f8c1ffb65a4c6cdddd5482bfa https://www.encodeproject.org/files/ENCFF000NSM/@@download/ENCFF000NSM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NSN bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NSX 871125644 Richard Myers, HAIB 003671b1058149cc2c347dd76cf0d507 https://www.encodeproject.org/files/ENCFF000NSN/@@download/ENCFF000NSN.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSO bigWig raw signal ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 39327505 Richard Myers, HAIB b85aafd949adcd13e3b657c9be536e46 https://www.encodeproject.org/files/ENCFF000NSO/@@download/ENCFF000NSO.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NSW fastq reads ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 951134552 Richard Myers, HAIB aa65d657885a4390d0961e257e000436 https://www.encodeproject.org/files/ENCFF000NSW/@@download/ENCFF000NSW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NSX fastq reads ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 912657521 Richard Myers, HAIB 28f58f2b113e59626753f7a07a8bc0b6 https://www.encodeproject.org/files/ENCFF000NSX/@@download/ENCFF000NSX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWF bed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 411017 Richard Myers, HAIB 8e4f07fd87143796afe22dfe4fa1c5b6 https://www.encodeproject.org/files/ENCFF001TWF/@@download/ENCFF001TWF.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWG bed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 792885 Richard Myers, HAIB 2a2ffa9b8b813c4a95c5d47c1a803c7b https://www.encodeproject.org/files/ENCFF001TWG/@@download/ENCFF001TWG.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGQ bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 633359 ENCODE Consortium Analysis Working Group 68eab32a1070bca1a8bc5e9eb96f6c47 https://www.encodeproject.org/files/ENCFF002CGQ/@@download/ENCFF002CGQ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF036BDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGQ 1410042 ENCODE Consortium 167b0284f66d5448c55a705f1fc723fe https://www.encodeproject.org/files/ENCFF036BDQ/@@download/ENCFF036BDQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF183OSG bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF643CGH 1136594916 ENCODE Processing Pipeline e7368e978b9f9c95e7977542a27b7670 https://www.encodeproject.org/files/ENCFF183OSG/@@download/ENCFF183OSG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF452LSN bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF643CGH 1186766493 ENCODE Processing Pipeline a36550270d5987883a7e19dc8b851659 https://www.encodeproject.org/files/ENCFF452LSN/@@download/ENCFF452LSN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF399QIP bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF643CGH 658647063 ENCODE Processing Pipeline 135436e87a5aa6285088d57b82206646 https://www.encodeproject.org/files/ENCFF399QIP/@@download/ENCFF399QIP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF802IZN bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF643CGH 687522694 ENCODE Processing Pipeline 572749ec1845e9028802b150709feda2 https://www.encodeproject.org/files/ENCFF802IZN/@@download/ENCFF802IZN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF346GCD bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF807MUK 1134228888 ENCODE Processing Pipeline 4b18d264a85c37566fefbb75be7762bd https://www.encodeproject.org/files/ENCFF346GCD/@@download/ENCFF346GCD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF558RVJ bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF807MUK 656607627 ENCODE Processing Pipeline 78aed600470dfaaf2da03c5bd17ff916 https://www.encodeproject.org/files/ENCFF558RVJ/@@download/ENCFF558RVJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF137FZZ bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF807MUK 1182834623 ENCODE Processing Pipeline e680cc531d101df5c14bd93daeb2c052 https://www.encodeproject.org/files/ENCFF137FZZ/@@download/ENCFF137FZZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF850VBC bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF807MUK 683256234 ENCODE Processing Pipeline 2130a5993e4305023eab6958de843e31 https://www.encodeproject.org/files/ENCFF850VBC/@@download/ENCFF850VBC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF776NQC bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 456016343 ENCODE Processing Pipeline f9173d1c59d666d0cb48dec6262ecdaf https://www.encodeproject.org/files/ENCFF776NQC/@@download/ENCFF776NQC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF657GHU bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 889982687 ENCODE Processing Pipeline 4d5d2d9c767896386e71688dca3dd2a1 https://www.encodeproject.org/files/ENCFF657GHU/@@download/ENCFF657GHU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF704LSN bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 4267001 ENCODE Processing Pipeline 092e74773a8c490e7463fd4674149e0f https://www.encodeproject.org/files/ENCFF704LSN/@@download/ENCFF704LSN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF735ZXJ bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 287193147 ENCODE Processing Pipeline 0afd7d790feb367354a7ff3405d9aae5 https://www.encodeproject.org/files/ENCFF735ZXJ/@@download/ENCFF735ZXJ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF770KXF bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 468123584 ENCODE Processing Pipeline 5e344ceb5b2f870470476d207bcbe8a4 https://www.encodeproject.org/files/ENCFF770KXF/@@download/ENCFF770KXF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF832YIE bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023JPV, ENCFF419RSJ, ENCFF471DNC, ENCFF704LSN 619153 ENCODE Processing Pipeline 8e4e292da42747043d1e759f09645b96 https://www.encodeproject.org/files/ENCFF832YIE/@@download/ENCFF832YIE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF765RYV bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF471DNC 11554051 ENCODE Processing Pipeline adba2b529e6942c2224036f55446b8f0 https://www.encodeproject.org/files/ENCFF765RYV/@@download/ENCFF765RYV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF388SRU bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 290725176 ENCODE Processing Pipeline e1e48cdf02d3c9c83b9d97fa48790f1d https://www.encodeproject.org/files/ENCFF388SRU/@@download/ENCFF388SRU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF424MMT bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 664584043 ENCODE Processing Pipeline 4f8b3d577b3e716b0c21dba8b985e502 https://www.encodeproject.org/files/ENCFF424MMT/@@download/ENCFF424MMT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF023JPV bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 4688816 ENCODE Processing Pipeline 9f61169c23ba2f724a9b68b23b221d68 https://www.encodeproject.org/files/ENCFF023JPV/@@download/ENCFF023JPV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF471DNC bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 5835967 ENCODE Processing Pipeline 08d66c598d22ecdea53984cd187de849 https://www.encodeproject.org/files/ENCFF471DNC/@@download/ENCFF471DNC.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF013CGK bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF704LSN 10483279 ENCODE Processing Pipeline 2526d2d73ae041b3cbc7f7b0333eff3c https://www.encodeproject.org/files/ENCFF013CGK/@@download/ENCFF013CGK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF045MGV bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF023JPV 10379242 ENCODE Processing Pipeline 1e7677739dc57d01a932f18018a47989 https://www.encodeproject.org/files/ENCFF045MGV/@@download/ENCFF045MGV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF826VTK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF832YIE 1113988 ENCODE Processing Pipeline bdaeea4956076624557300bb3381eede https://www.encodeproject.org/files/ENCFF826VTK/@@download/ENCFF826VTK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF142FZS bed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023JPV, ENCFF419RSJ, ENCFF471DNC, ENCFF704LSN 503964 ENCODE Processing Pipeline 6df3b72bb3ef2038546f06c30cb8b0b2 https://www.encodeproject.org/files/ENCFF142FZS/@@download/ENCFF142FZS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF795UAN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF142FZS 959140 ENCODE Processing Pipeline d0a76d7c73f1e0f84b7e29ecb8065e28 https://www.encodeproject.org/files/ENCFF795UAN/@@download/ENCFF795UAN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF926YBS bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 956195863 ENCODE Processing Pipeline 7f728ba7c02fa68b585b9f1d78b700c9 https://www.encodeproject.org/files/ENCFF926YBS/@@download/ENCFF926YBS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF331PAU bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 494833557 ENCODE Processing Pipeline 349de97b63d8a43dfd24c570dd096413 https://www.encodeproject.org/files/ENCFF331PAU/@@download/ENCFF331PAU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF413PZT bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 665527096 ENCODE Processing Pipeline 9784b13df9bc89fc31127da11aa0371d https://www.encodeproject.org/files/ENCFF413PZT/@@download/ENCFF413PZT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF575XSY bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 420592386 ENCODE Processing Pipeline 14a6f810e838160ccb509cba66a57fea https://www.encodeproject.org/files/ENCFF575XSY/@@download/ENCFF575XSY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF810WXY bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 289687774 ENCODE Processing Pipeline f25391bb8be2e9bfb4463b3ba1b02339 https://www.encodeproject.org/files/ENCFF810WXY/@@download/ENCFF810WXY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF482FJT bed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078EBJ, ENCFF521MBW, ENCFF887VZZ 477696 ENCODE Processing Pipeline ab16892958a2724272194ef04bcd92f5 https://www.encodeproject.org/files/ENCFF482FJT/@@download/ENCFF482FJT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF936ACZ bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 285083863 ENCODE Processing Pipeline ed29e1615a41ce65795f58402742b0cd https://www.encodeproject.org/files/ENCFF936ACZ/@@download/ENCFF936ACZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF521MBW bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 5582668 ENCODE Processing Pipeline 8f717351d62201bcf8422ba48029426f https://www.encodeproject.org/files/ENCFF521MBW/@@download/ENCFF521MBW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF887VZZ bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 4256624 ENCODE Processing Pipeline 233a9430984404d152bb5e70c69c3bc6 https://www.encodeproject.org/files/ENCFF887VZZ/@@download/ENCFF887VZZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF583ZPC bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF078EBJ 10410685 ENCODE Processing Pipeline 675ac4208d4ca3dd6a8a0cbba9333543 https://www.encodeproject.org/files/ENCFF583ZPC/@@download/ENCFF583ZPC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF593FBF bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078EBJ, ENCFF521MBW, ENCFF887VZZ 573169 ENCODE Processing Pipeline 40e640037d380cec9194af33adafd71e https://www.encodeproject.org/files/ENCFF593FBF/@@download/ENCFF593FBF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF078EBJ bed narrowPeak peaks and background as input for IDR ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 4712048 ENCODE Processing Pipeline cb1dad2c3fc0d5a95c7389785e59fc44 https://www.encodeproject.org/files/ENCFF078EBJ/@@download/ENCFF078EBJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF751UIH bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF887VZZ 10468347 ENCODE Processing Pipeline 07c19121886f3b286d82961dcad8f127 https://www.encodeproject.org/files/ENCFF751UIH/@@download/ENCFF751UIH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF680OYH bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF521MBW 11265995 ENCODE Processing Pipeline 8f13152cf32e50c64987f88cbcbc328f https://www.encodeproject.org/files/ENCFF680OYH/@@download/ENCFF680OYH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF243MVH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482FJT 912514 ENCODE Processing Pipeline 9625995a648b711178fc4b617659ae01 https://www.encodeproject.org/files/ENCFF243MVH/@@download/ENCFF243MVH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF644RJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593FBF 1037564 ENCODE Processing Pipeline 0888e67e824c579a33a8ce20aa14c894 https://www.encodeproject.org/files/ENCFF644RJO/@@download/ENCFF644RJO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NZP bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OAD 824327593 Richard Myers, HAIB 48a26cfaef9f38fd5058ddf2235c673d https://www.encodeproject.org/files/ENCFF000NZP/@@download/ENCFF000NZP.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000NZR bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OAF 890020471 Richard Myers, HAIB 703340fad3b63649b18aaa7ee634a12b https://www.encodeproject.org/files/ENCFF000NZR/@@download/ENCFF000NZR.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000NZT bigBed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYC 443294 Richard Myers, HAIB 6a487d38accf6f54f1a9162adbbc198d https://www.encodeproject.org/files/ENCFF000NZT/@@download/ENCFF000NZT.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000NZU bigBed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYD 744558 Richard Myers, HAIB 8b718e0a80eaaa094f4da67dbb93cad0 https://www.encodeproject.org/files/ENCFF000NZU/@@download/ENCFF000NZU.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000NZV bigWig raw signal ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 18401340 Richard Myers, HAIB 18a4bb4f46338181723315902643638a https://www.encodeproject.org/files/ENCFF000NZV/@@download/ENCFF000NZV.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000NZW bigWig raw signal ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 23253234 Richard Myers, HAIB 019aebdbc34b09317dc76c8b823be0c8 https://www.encodeproject.org/files/ENCFF000NZW/@@download/ENCFF000NZW.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000OAD fastq reads ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 977701731 Richard Myers, HAIB 3b033aa9f3910e33ba5b5e9cf985c7ae https://www.encodeproject.org/files/ENCFF000OAD/@@download/ENCFF000OAD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000OAF fastq reads ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1045848220 Richard Myers, HAIB bfeb84734180538588142463cf6536c4 https://www.encodeproject.org/files/ENCFF000OAF/@@download/ENCFF000OAF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF001TYC bed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 230920 Richard Myers, HAIB 40736db437a314562c2cb7278c353445 https://www.encodeproject.org/files/ENCFF001TYC/@@download/ENCFF001TYC.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001TYD bed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 407474 Richard Myers, HAIB 7af331059b42fcb8a71e94cdde2fdf1b https://www.encodeproject.org/files/ENCFF001TYD/@@download/ENCFF001TYD.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002CHL bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 256644 ENCODE Consortium Analysis Working Group 74d56b36de93116ca951da4d1b0fc189 https://www.encodeproject.org/files/ENCFF002CHL/@@download/ENCFF002CHL.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF182VLG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHL 705763 ENCODE Consortium e8698ddd04c50196d3212af89c67a737 https://www.encodeproject.org/files/ENCFF182VLG/@@download/ENCFF182VLG.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF304FLU bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF807MUK 1215889607 ENCODE Processing Pipeline 3a7da11dfa627d9d5a986b0de2e9ab9d https://www.encodeproject.org/files/ENCFF304FLU/@@download/ENCFF304FLU.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF975ADV bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF807MUK 560822826 ENCODE Processing Pipeline 4cd1cb59446830b972144f30c1b6a646 https://www.encodeproject.org/files/ENCFF975ADV/@@download/ENCFF975ADV.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF995SFW bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF807MUK 1324854751 ENCODE Processing Pipeline 01d2a648ef5b64517b254988479db54e https://www.encodeproject.org/files/ENCFF995SFW/@@download/ENCFF995SFW.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF183DZU bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF807MUK 666963521 ENCODE Processing Pipeline 2025825749236bed4a08edd407832e2e https://www.encodeproject.org/files/ENCFF183DZU/@@download/ENCFF183DZU.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF558OGS bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF643CGH 1219134745 ENCODE Processing Pipeline 8a00f25dc82199917c8563c6a8b79b99 https://www.encodeproject.org/files/ENCFF558OGS/@@download/ENCFF558OGS.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF389MHG bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF643CGH 1328410851 ENCODE Processing Pipeline f9a543998aa01a5b793702afa38c57c7 https://www.encodeproject.org/files/ENCFF389MHG/@@download/ENCFF389MHG.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF791EPM bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF643CGH 565801917 ENCODE Processing Pipeline f51a56a7b622c6d25b4a277b6820da99 https://www.encodeproject.org/files/ENCFF791EPM/@@download/ENCFF791EPM.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF845MYC bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF643CGH 668203511 ENCODE Processing Pipeline 141168d9fac65acd3bce40b23283d1de https://www.encodeproject.org/files/ENCFF845MYC/@@download/ENCFF845MYC.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF152BKY bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 349198728 ENCODE Processing Pipeline cb9e648393a8e4cc12e2d14504c6d133 https://www.encodeproject.org/files/ENCFF152BKY/@@download/ENCFF152BKY.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF889RYR bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 4204745 ENCODE Processing Pipeline 11d261f703f14bbe7c34db9443958ed6 https://www.encodeproject.org/files/ENCFF889RYR/@@download/ENCFF889RYR.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF671AVF bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 534391643 ENCODE Processing Pipeline 3b54348fda6dea7ca2e4b668ac187fc6 https://www.encodeproject.org/files/ENCFF671AVF/@@download/ENCFF671AVF.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF531XMY bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 802666691 ENCODE Processing Pipeline 4e1c59501bac627df1fdc426c06d29f2 https://www.encodeproject.org/files/ENCFF531XMY/@@download/ENCFF531XMY.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF845ROK bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 294731890 ENCODE Processing Pipeline 60003a86c6fc812ccc28e2e2dcd5e131 https://www.encodeproject.org/files/ENCFF845ROK/@@download/ENCFF845ROK.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF349FQI bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 4769330 ENCODE Processing Pipeline 3eed8d776f318cf7287353397732b077 https://www.encodeproject.org/files/ENCFF349FQI/@@download/ENCFF349FQI.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF535BIH bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 549618056 ENCODE Processing Pipeline c2a024884b27c0308b2687fc0093941c https://www.encodeproject.org/files/ENCFF535BIH/@@download/ENCFF535BIH.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF923PSA bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 539049556 ENCODE Processing Pipeline 64f71af360e740da35f08904dca2d526 https://www.encodeproject.org/files/ENCFF923PSA/@@download/ENCFF923PSA.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF067LQX bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 5159518 ENCODE Processing Pipeline 3b4f3dfff54782a1eaa15e8fbae1670d https://www.encodeproject.org/files/ENCFF067LQX/@@download/ENCFF067LQX.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF784OKU bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF889RYR 10549707 ENCODE Processing Pipeline d2247550dcfd9e804b8f91590325b124 https://www.encodeproject.org/files/ENCFF784OKU/@@download/ENCFF784OKU.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF926LHG bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX, ENCFF349FQI, ENCFF419RSJ, ENCFF889RYR 212397 ENCODE Processing Pipeline 75ec5e416d30c6b0cc55ca9abd1dd655 https://www.encodeproject.org/files/ENCFF926LHG/@@download/ENCFF926LHG.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF887BST bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF926LHG 378657 ENCODE Processing Pipeline e36db0b0be6894e8c96dd57e8514c089 https://www.encodeproject.org/files/ENCFF887BST/@@download/ENCFF887BST.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF636MTC bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF349FQI 10898258 ENCODE Processing Pipeline c1d26f1b6c8543717cafcff0c2bc16f8 https://www.encodeproject.org/files/ENCFF636MTC/@@download/ENCFF636MTC.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF905NDT bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX 11245939 ENCODE Processing Pipeline 8ef0f5d864c3ed63af22f199bcf004bf https://www.encodeproject.org/files/ENCFF905NDT/@@download/ENCFF905NDT.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF003INQ bed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX, ENCFF349FQI, ENCFF419RSJ, ENCFF889RYR 56357 ENCODE Processing Pipeline a7c9856d3d0425f174eef23ffd32929b https://www.encodeproject.org/files/ENCFF003INQ/@@download/ENCFF003INQ.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF440TQU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF003INQ 139631 ENCODE Processing Pipeline 1aad31bae4c2a2df681a2493a205c0d7 https://www.encodeproject.org/files/ENCFF440TQU/@@download/ENCFF440TQU.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF505MRA bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 297089789 ENCODE Processing Pipeline 20a5119d186f91bdef60ce112476ff09 https://www.encodeproject.org/files/ENCFF505MRA/@@download/ENCFF505MRA.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF312KOJ bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 4771390 ENCODE Processing Pipeline e67d39616e6c69a48e8ff1925f3aca82 https://www.encodeproject.org/files/ENCFF312KOJ/@@download/ENCFF312KOJ.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF413IFA bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF961XVK 11220569 ENCODE Processing Pipeline 6f6024948fbecc3ec314b2391d3e4c1a https://www.encodeproject.org/files/ENCFF413IFA/@@download/ENCFF413IFA.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF022SDG bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 566356970 ENCODE Processing Pipeline d612bff0fd912ca6302df098be75714a https://www.encodeproject.org/files/ENCFF022SDG/@@download/ENCFF022SDG.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF937OGC bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 584004184 ENCODE Processing Pipeline c469a0bfe79898e26e5f73e1a9629d7a https://www.encodeproject.org/files/ENCFF937OGC/@@download/ENCFF937OGC.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF999YFK bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 4223573 ENCODE Processing Pipeline 31c6d64503c75d48ab0ec0985faa8ae3 https://www.encodeproject.org/files/ENCFF999YFK/@@download/ENCFF999YFK.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF188MLT bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 607508731 ENCODE Processing Pipeline bdff11c456daca4084bc033a0c5a3c56 https://www.encodeproject.org/files/ENCFF188MLT/@@download/ENCFF188MLT.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF098TMS bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 790035262 ENCODE Processing Pipeline f0ab20b48eb676280d87f04a80b81fab https://www.encodeproject.org/files/ENCFF098TMS/@@download/ENCFF098TMS.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF961XVK bed narrowPeak peaks and background as input for IDR ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 5140666 ENCODE Processing Pipeline 09331e575474ad7040ef3c2d15622837 https://www.encodeproject.org/files/ENCFF961XVK/@@download/ENCFF961XVK.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF934AHA bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF312KOJ 10895564 ENCODE Processing Pipeline f8be8d292789a3cce4ba7c2e13449aa6 https://www.encodeproject.org/files/ENCFF934AHA/@@download/ENCFF934AHA.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF717IXP bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF312KOJ, ENCFF961XVK, ENCFF999YFK 202822 ENCODE Processing Pipeline f39e6439756dca581c82f686dd30b485 https://www.encodeproject.org/files/ENCFF717IXP/@@download/ENCFF717IXP.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF438DUW bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 349586906 ENCODE Processing Pipeline 3c67783677c2f4b3b2d242c49f4fc852 https://www.encodeproject.org/files/ENCFF438DUW/@@download/ENCFF438DUW.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF511YXY bed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF312KOJ, ENCFF961XVK, ENCFF999YFK 55845 ENCODE Processing Pipeline 595f0e4565a0cb650baa79f4fdfe2bf1 https://www.encodeproject.org/files/ENCFF511YXY/@@download/ENCFF511YXY.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF154ZCV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF511YXY 138420 ENCODE Processing Pipeline 6f2c5d4d2ee0eb3d28207d1e55fc76b7 https://www.encodeproject.org/files/ENCFF154ZCV/@@download/ENCFF154ZCV.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF858NUW bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF999YFK 10572806 ENCODE Processing Pipeline 737a0919065f9573e44a2950edc4fc94 https://www.encodeproject.org/files/ENCFF858NUW/@@download/ENCFF858NUW.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF015GRT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF717IXP 365908 ENCODE Processing Pipeline 9bb774fad63186bbd1a37d83730b90cd https://www.encodeproject.org/files/ENCFF015GRT/@@download/ENCFF015GRT.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient replicate concordance ENCFF000VSZ bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VTF 166650477 Sherman Weissman, Yale b93933f5ceee4605905d947a4681879d https://www.encodeproject.org/files/ENCFF000VSZ/@@download/ENCFF000VSZ.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTA bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VTG 199889923 Sherman Weissman, Yale 1d61b5fa31af4d4d667eb764a3e48f9a https://www.encodeproject.org/files/ENCFF000VTA/@@download/ENCFF000VTA.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTB bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000VTH 211824862 Sherman Weissman, Yale 58f0541782636fa253236fbf6d133068 https://www.encodeproject.org/files/ENCFF000VTB/@@download/ENCFF000VTB.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTC bigBed narrowPeak peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDZ 123977 Sherman Weissman, Yale 259bb32da63320c002f47cf535ebba04 https://www.encodeproject.org/files/ENCFF000VTC/@@download/ENCFF000VTC.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTD bigWig signal ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 283855084 Sherman Weissman, Yale 5475bb9382be21439a8bf28b97a1cd80 https://www.encodeproject.org/files/ENCFF000VTD/@@download/ENCFF000VTD.bigWig hg19 released duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000VTF fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 132014501 Sherman Weissman, Yale d59ff2b70d766fc6a82fd0036e294bca https://www.encodeproject.org/files/ENCFF000VTF/@@download/ENCFF000VTF.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTG fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 167039576 Sherman Weissman, Yale ad94b4c3d047656b0d9f056a280896ae https://www.encodeproject.org/files/ENCFF000VTG/@@download/ENCFF000VTG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTH fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 172284468 Sherman Weissman, Yale be02092c5fea0a7b938f2790accae31d https://www.encodeproject.org/files/ENCFF000VTH/@@download/ENCFF000VTH.fastq.gz Illumina Genome Analyzer released duplicate lane review, biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VDZ bed narrowPeak peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 29612 Sherman Weissman, Yale 3af9eb3e6946e9db84925ae4f2f31e75 https://www.encodeproject.org/files/ENCFF001VDZ/@@download/ENCFF001VDZ.bed.gz hg19 released duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002COM bed narrowPeak optimal idr thresholded peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 55234 ENCODE Consortium Analysis Working Group f1d429a4e067d67537009d22f43162c8 https://www.encodeproject.org/files/ENCFF002COM/@@download/ENCFF002COM.bed.gz hg19 released duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF083XJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COM 171579 ENCODE Consortium c3c24c22950cd1fab4d06a130d339858 https://www.encodeproject.org/files/ENCFF083XJS/@@download/ENCFF083XJS.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF027BOY fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF661STW 2468564863 Michael Snyder, Stanford e3051987ca006d1352c986aca8d26ca1 SRA:SRR6213381 https://www.encodeproject.org/files/ENCFF027BOY/@@download/ENCFF027BOY.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF661STW fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF027BOY 3074211222 Michael Snyder, Stanford 55d5762a369b53f0d7d571bfb8d0b587 SRA:SRR6213381 https://www.encodeproject.org/files/ENCFF661STW/@@download/ENCFF661STW.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF257GIX fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF296PDU 3822066826 Michael Snyder, Stanford b16c3749b313b5d978cc2f092f4dd964 SRA:SRR6213382 https://www.encodeproject.org/files/ENCFF257GIX/@@download/ENCFF257GIX.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF296PDU fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF257GIX 3183953691 Michael Snyder, Stanford 602e88e89d438e125d2ffc9f101bb225 SRA:SRR6213382 https://www.encodeproject.org/files/ENCFF296PDU/@@download/ENCFF296PDU.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF685HCB bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF661STW, ENCFF807MUK 5446565398 ENCODE Processing Pipeline 46fd5491f392150e18d9334b2474e446 https://www.encodeproject.org/files/ENCFF685HCB/@@download/ENCFF685HCB.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF780NKT bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF643CGH, ENCFF661STW 5453679216 ENCODE Processing Pipeline b965d562197b26deed07ca7c55e29aeb https://www.encodeproject.org/files/ENCFF780NKT/@@download/ENCFF780NKT.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF671NSO bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF807MUK 6505038652 ENCODE Processing Pipeline c98c8f34726b97adbec5712834be8361 https://www.encodeproject.org/files/ENCFF671NSO/@@download/ENCFF671NSO.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF816IGR bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF661STW, ENCFF807MUK 4148906793 ENCODE Processing Pipeline 4dec1a2bd7ab69605a7db9c7eb8593b2 https://www.encodeproject.org/files/ENCFF816IGR/@@download/ENCFF816IGR.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF215KGT bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF807MUK 4668376996 ENCODE Processing Pipeline 1ef598c20fc6d6e645a45679dac6f470 https://www.encodeproject.org/files/ENCFF215KGT/@@download/ENCFF215KGT.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF703ZDY bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF643CGH 6510596563 ENCODE Processing Pipeline 5384c63a973f000d92ec3f1a8dc9e94a https://www.encodeproject.org/files/ENCFF703ZDY/@@download/ENCFF703ZDY.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF427CQP bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF643CGH, ENCFF661STW 4154454376 ENCODE Processing Pipeline 4ff93ec818dabe34ad0a65d6632ff56a https://www.encodeproject.org/files/ENCFF427CQP/@@download/ENCFF427CQP.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF531RDZ bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF643CGH 4674488662 ENCODE Processing Pipeline 47d2ee4068cd054db83e23af655d00bc https://www.encodeproject.org/files/ENCFF531RDZ/@@download/ENCFF531RDZ.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF925ZAR bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 1214969645 ENCODE Processing Pipeline 83857aa6fb9fc606635a5b2c391b7fcd https://www.encodeproject.org/files/ENCFF925ZAR/@@download/ENCFF925ZAR.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF929QGK bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 2086094911 ENCODE Processing Pipeline 78e7fa751c69e509b98a49e3e536909a https://www.encodeproject.org/files/ENCFF929QGK/@@download/ENCFF929QGK.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF651YYN bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 1435024472 ENCODE Processing Pipeline adc6e15a1f412b24b3c7cba39c994e61 https://www.encodeproject.org/files/ENCFF651YYN/@@download/ENCFF651YYN.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF308RFY bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 5961135 ENCODE Processing Pipeline 81d93d6c05d0232c271be38ec82ff8fa https://www.encodeproject.org/files/ENCFF308RFY/@@download/ENCFF308RFY.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF649MUM bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF308RFY 11444248 ENCODE Processing Pipeline 24e9af358ec61fdc829a78d4d2161653 https://www.encodeproject.org/files/ENCFF649MUM/@@download/ENCFF649MUM.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF747IZZ bed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF082QVO, ENCFF222GJV, ENCFF308RFY 23586 ENCODE Processing Pipeline 5a2b0ca2ff771fe2ac4eba74d772cf86 https://www.encodeproject.org/files/ENCFF747IZZ/@@download/ENCFF747IZZ.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF896UQP bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 1227234780 ENCODE Processing Pipeline 8bac748131d1430ae7e1a40a54d8f0ef https://www.encodeproject.org/files/ENCFF896UQP/@@download/ENCFF896UQP.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF015YHT bed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF082QVO, ENCFF222GJV, ENCFF308RFY 53338 ENCODE Processing Pipeline a8cfce2cd4f95a90ebe3f1b1704ea0a7 https://www.encodeproject.org/files/ENCFF015YHT/@@download/ENCFF015YHT.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF082QVO bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 7109524 ENCODE Processing Pipeline f861d40af9b09d59255a3cd412273cbe https://www.encodeproject.org/files/ENCFF082QVO/@@download/ENCFF082QVO.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF737SPF bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 1281054274 ENCODE Processing Pipeline e6628676bdff900bdba6e89ea8ba9371 https://www.encodeproject.org/files/ENCFF737SPF/@@download/ENCFF737SPF.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF222GJV bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 5988641 ENCODE Processing Pipeline ef43bf68252988f3222d451c9f68c7a5 https://www.encodeproject.org/files/ENCFF222GJV/@@download/ENCFF222GJV.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF954UNS bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF082QVO 11638799 ENCODE Processing Pipeline ae4e0532dd7d8bb015d3f7676d792f27 https://www.encodeproject.org/files/ENCFF954UNS/@@download/ENCFF954UNS.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF167BQX bigBed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF747IZZ 98129 ENCODE Processing Pipeline 4b773f67a8932fbfa0a9e3578470cc28 https://www.encodeproject.org/files/ENCFF167BQX/@@download/ENCFF167BQX.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF534OEO bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 2387591928 ENCODE Processing Pipeline 84b90b7d9807ffa7220a5858e69d3e30 https://www.encodeproject.org/files/ENCFF534OEO/@@download/ENCFF534OEO.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF659SMR bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF222GJV 11606720 ENCODE Processing Pipeline 4fe641dc06d5abc45b4dfd7485d973a1 https://www.encodeproject.org/files/ENCFF659SMR/@@download/ENCFF659SMR.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF291OOO bigBed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF015YHT 143692 ENCODE Processing Pipeline 95f397fa81ecb5634bc003bb45a29153 https://www.encodeproject.org/files/ENCFF291OOO/@@download/ENCFF291OOO.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF556EKD bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 1069987386 ENCODE Processing Pipeline 84542356d5817c44324a55c14edc829d https://www.encodeproject.org/files/ENCFF556EKD/@@download/ENCFF556EKD.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF559ZGL bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 1903299777 ENCODE Processing Pipeline c61ee1eaa872620e29b228b376cfd0a0 https://www.encodeproject.org/files/ENCFF559ZGL/@@download/ENCFF559ZGL.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF897EDT bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 5959347 ENCODE Processing Pipeline aad2d8d22df82be59dfd34a8646f23fe https://www.encodeproject.org/files/ENCFF897EDT/@@download/ENCFF897EDT.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF156ZBF bed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134DSR, ENCFF419RSJ, ENCFF868UEY, ENCFF897EDT 24524 ENCODE Processing Pipeline 4ccd597996767ec09a3a827052a5a8e0 https://www.encodeproject.org/files/ENCFF156ZBF/@@download/ENCFF156ZBF.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF381ZDU bed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134DSR, ENCFF419RSJ, ENCFF868UEY, ENCFF897EDT 53005 ENCODE Processing Pipeline 45059f90138d40e14c0c5b7302bef7ea https://www.encodeproject.org/files/ENCFF381ZDU/@@download/ENCFF381ZDU.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF248FRU bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 1138550331 ENCODE Processing Pipeline 4a77ce31084df6b335802280935e5db5 https://www.encodeproject.org/files/ENCFF248FRU/@@download/ENCFF248FRU.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF082JNG bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 1436235545 ENCODE Processing Pipeline 3dc2bb59232419251a202a6f79f0c29e https://www.encodeproject.org/files/ENCFF082JNG/@@download/ENCFF082JNG.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF856LYZ bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 2386479287 ENCODE Processing Pipeline f3258aaad677b82c7e3574aa1cf9f05b https://www.encodeproject.org/files/ENCFF856LYZ/@@download/ENCFF856LYZ.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF918NZM bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF868UEY 11661368 ENCODE Processing Pipeline 8d86b75793fd4b05e7f9fc36de49cf40 https://www.encodeproject.org/files/ENCFF918NZM/@@download/ENCFF918NZM.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF902XDD bigBed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF156ZBF 101118 ENCODE Processing Pipeline e0a9c02a610401f9688dd65684c8a35b https://www.encodeproject.org/files/ENCFF902XDD/@@download/ENCFF902XDD.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF523NQP bigBed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF381ZDU 144664 ENCODE Processing Pipeline b5213939481072ade756e70adefa1774 https://www.encodeproject.org/files/ENCFF523NQP/@@download/ENCFF523NQP.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF664XOX bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF897EDT 11456233 ENCODE Processing Pipeline 6b55a2edf99dbaab0f5b9ff23ea44d0a https://www.encodeproject.org/files/ENCFF664XOX/@@download/ENCFF664XOX.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF664OLG bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 1282101113 ENCODE Processing Pipeline 6c8732f61839ea5fac632ce81806e5a5 https://www.encodeproject.org/files/ENCFF664OLG/@@download/ENCFF664OLG.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF134DSR bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 5985375 ENCODE Processing Pipeline 140c7c943827734623047eb0ad7ddfad https://www.encodeproject.org/files/ENCFF134DSR/@@download/ENCFF134DSR.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF868UEY bed narrowPeak peaks and background as input for IDR ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 7114650 ENCODE Processing Pipeline ecb221b254174c8d10b9622f08dbe353 https://www.encodeproject.org/files/ENCFF868UEY/@@download/ENCFF868UEY.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF217OOL bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF134DSR 11620295 ENCODE Processing Pipeline f34768e67fe6e8e929c9088354881d6e https://www.encodeproject.org/files/ENCFF217OOL/@@download/ENCFF217OOL.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking, borderline replicate concordance ENCFF013EUB bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF807MUK 4796408917 ENCODE Processing Pipeline 9874606c19192117774c4ceb0ce184ef https://www.encodeproject.org/files/ENCFF013EUB/@@download/ENCFF013EUB.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF410XYU fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF509XFH 2816738853 Michael Snyder, Stanford 168131b75c2e5a1b9e77fe9968cb16e3 SRA:SRR6213088 https://www.encodeproject.org/files/ENCFF410XYU/@@download/ENCFF410XYU.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF509XFH fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF410XYU 3009802033 Michael Snyder, Stanford fa2f5f3daeef95d1eeccdd60e36ebfce SRA:SRR6213088 https://www.encodeproject.org/files/ENCFF509XFH/@@download/ENCFF509XFH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF294ZQW fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF110RBD 2362481885 Michael Snyder, Stanford 62d399163599c249a6b2aa4ae0108d90 SRA:SRR6213087 https://www.encodeproject.org/files/ENCFF294ZQW/@@download/ENCFF294ZQW.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF110RBD fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF294ZQW 2825906258 Michael Snyder, Stanford 898170160be0141ffca7b961dc8bd2d2 SRA:SRR6213087 https://www.encodeproject.org/files/ENCFF110RBD/@@download/ENCFF110RBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF914YJM bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF807MUK 3003262429 ENCODE Processing Pipeline 80f26fa3c0a2025eeb9b7345d8673b78 https://www.encodeproject.org/files/ENCFF914YJM/@@download/ENCFF914YJM.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF350ULX bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF643CGH 2968143377 ENCODE Processing Pipeline fa2eb3b3f27967bc83850ee918876afe https://www.encodeproject.org/files/ENCFF350ULX/@@download/ENCFF350ULX.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF828HRI bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF643CGH 4799935975 ENCODE Processing Pipeline 6677aeab4738c2c31d864caef8a676fa https://www.encodeproject.org/files/ENCFF828HRI/@@download/ENCFF828HRI.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF685TVP bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF807MUK 5267487325 ENCODE Processing Pipeline 700c903ff2a7ee2f10868e5605525e0d https://www.encodeproject.org/files/ENCFF685TVP/@@download/ENCFF685TVP.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF806TCI bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF643CGH 3007029896 ENCODE Processing Pipeline 7ba27f46116865533570fb393099ac57 https://www.encodeproject.org/files/ENCFF806TCI/@@download/ENCFF806TCI.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF104CQY bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF643CGH 5268327799 ENCODE Processing Pipeline c231aad1670b44b3e3e9076a63b9a4ee https://www.encodeproject.org/files/ENCFF104CQY/@@download/ENCFF104CQY.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF256QZV bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 952306215 ENCODE Processing Pipeline 64c4c95b9108aae2485379c06932cee4 https://www.encodeproject.org/files/ENCFF256QZV/@@download/ENCFF256QZV.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF109ASL bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 1014314242 ENCODE Processing Pipeline b8725477016499df09c0801938d44806 https://www.encodeproject.org/files/ENCFF109ASL/@@download/ENCFF109ASL.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF456RPI bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 994203219 ENCODE Processing Pipeline 62f1f262c53f0d4147e1b3135ac8717c https://www.encodeproject.org/files/ENCFF456RPI/@@download/ENCFF456RPI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF167ANV bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 2062988735 ENCODE Processing Pipeline 33203bd499814943b0fed53f51b4fc98 https://www.encodeproject.org/files/ENCFF167ANV/@@download/ENCFF167ANV.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF936ZRU bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 1034010789 ENCODE Processing Pipeline 8e58acdabd42232c0227ed67cf0ec545 https://www.encodeproject.org/files/ENCFF936ZRU/@@download/ENCFF936ZRU.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF052YOW bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 1992098935 ENCODE Processing Pipeline 73380d49a41e69ad416f42f75d39240b https://www.encodeproject.org/files/ENCFF052YOW/@@download/ENCFF052YOW.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF614KCL bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 5437429 ENCODE Processing Pipeline 9758508711792d4c9dd5b69ed5a2f378 https://www.encodeproject.org/files/ENCFF614KCL/@@download/ENCFF614KCL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF157QCB bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 5394009 ENCODE Processing Pipeline d20b9ce3aff36a0b93b6f3e99bc6f124 https://www.encodeproject.org/files/ENCFF157QCB/@@download/ENCFF157QCB.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF941NEK bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 6680249 ENCODE Processing Pipeline c0f9c11d693cda52d8aac2cdfad5db4e https://www.encodeproject.org/files/ENCFF941NEK/@@download/ENCFF941NEK.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF757FZE bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF614KCL 11517095 ENCODE Processing Pipeline 5381fc5ac53af28ed1dfd6b3f0aabf4e https://www.encodeproject.org/files/ENCFF757FZE/@@download/ENCFF757FZE.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF588RJS bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF157QCB 11270948 ENCODE Processing Pipeline 203c14a83262f03f27dfba7089ef1ef0 https://www.encodeproject.org/files/ENCFF588RJS/@@download/ENCFF588RJS.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF313SSW bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF941NEK 11478469 ENCODE Processing Pipeline 00765b27bb6f7d2803e4db85199ff26f https://www.encodeproject.org/files/ENCFF313SSW/@@download/ENCFF313SSW.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF282AHI bed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF157QCB, ENCFF419RSJ, ENCFF614KCL, ENCFF941NEK 82308 ENCODE Processing Pipeline d41684bd7935605e290012822e96b35b https://www.encodeproject.org/files/ENCFF282AHI/@@download/ENCFF282AHI.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF831OHY bigBed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF282AHI 190213 ENCODE Processing Pipeline b13447a0d7066ca8489016f7d309a184 https://www.encodeproject.org/files/ENCFF831OHY/@@download/ENCFF831OHY.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF214NJL bed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF157QCB, ENCFF419RSJ, ENCFF614KCL, ENCFF941NEK 142305 ENCODE Processing Pipeline 19d392bca5367cf648e2045dda900e83 https://www.encodeproject.org/files/ENCFF214NJL/@@download/ENCFF214NJL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF661DYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF214NJL 324132 ENCODE Processing Pipeline 1a1aa3b48b6cdfbd72f3600d6649aa83 https://www.encodeproject.org/files/ENCFF661DYQ/@@download/ENCFF661DYQ.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF987UCV bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF807MUK 2964389146 ENCODE Processing Pipeline a57039b59b37af2b0430bf13bc00252e https://www.encodeproject.org/files/ENCFF987UCV/@@download/ENCFF987UCV.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF796JRN bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 1050022733 ENCODE Processing Pipeline e34c11df2c8879201ead66c62ed2e57d https://www.encodeproject.org/files/ENCFF796JRN/@@download/ENCFF796JRN.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF335TSD bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 1958320363 ENCODE Processing Pipeline 2616ab9f33f4e9ccf80b4245751ccb1d https://www.encodeproject.org/files/ENCFF335TSD/@@download/ENCFF335TSD.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF003TOD bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 5394737 ENCODE Processing Pipeline e51539b0a46991b9c84fffe5205f9087 https://www.encodeproject.org/files/ENCFF003TOD/@@download/ENCFF003TOD.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF106XTS bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF003TOD 11253010 ENCODE Processing Pipeline 560cfb6bbecbef68acf9163dc7d2a780 https://www.encodeproject.org/files/ENCFF106XTS/@@download/ENCFF106XTS.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF670DVM bigBed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF567ENM 186289 ENCODE Processing Pipeline e3c39b5a27c3c6d81e2ca1d16c94c170 https://www.encodeproject.org/files/ENCFF670DVM/@@download/ENCFF670DVM.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF708SLW bigBed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF455HXN 321121 ENCODE Processing Pipeline 276ad025e2b9e7c98141724a4126ffc0 https://www.encodeproject.org/files/ENCFF708SLW/@@download/ENCFF708SLW.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF413XZW bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 1012772338 ENCODE Processing Pipeline d537fcf3996c74a21c7cf39925fc8369 https://www.encodeproject.org/files/ENCFF413XZW/@@download/ENCFF413XZW.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF964JLQ bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 1995027668 ENCODE Processing Pipeline babe269228e2a02946ddbf460355cfff https://www.encodeproject.org/files/ENCFF964JLQ/@@download/ENCFF964JLQ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF567ENM bed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF003TOD, ENCFF306UPG, ENCFF781FBO 80743 ENCODE Processing Pipeline 657da28f6dbcdcd492a96e42b7d56f0b https://www.encodeproject.org/files/ENCFF567ENM/@@download/ENCFF567ENM.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF551QSO bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 931424666 ENCODE Processing Pipeline b098933b30d28a210e4f08be6a631782 https://www.encodeproject.org/files/ENCFF551QSO/@@download/ENCFF551QSO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF455HXN bed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF003TOD, ENCFF306UPG, ENCFF781FBO 142613 ENCODE Processing Pipeline 9e9e89c3678bd6eabbfa0df644c7f166 https://www.encodeproject.org/files/ENCFF455HXN/@@download/ENCFF455HXN.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF980XWO bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 1031689760 ENCODE Processing Pipeline 87f022bed1d49df86b577b24478e1c4d https://www.encodeproject.org/files/ENCFF980XWO/@@download/ENCFF980XWO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF306UPG bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 5433941 ENCODE Processing Pipeline f5b014bec09dab11dd8a15a8a7feade2 https://www.encodeproject.org/files/ENCFF306UPG/@@download/ENCFF306UPG.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF781FBO bed narrowPeak peaks and background as input for IDR ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 6672379 ENCODE Processing Pipeline 6bdf4560e3c00c381847f44dff79af31 https://www.encodeproject.org/files/ENCFF781FBO/@@download/ENCFF781FBO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF046MYG bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF306UPG 11503438 ENCODE Processing Pipeline 3e468a9fb18ebafa36d4c9ae941897d4 https://www.encodeproject.org/files/ENCFF046MYG/@@download/ENCFF046MYG.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF955OFB bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF781FBO 11462552 ENCODE Processing Pipeline 3ed18879909468f4d31aa1fb21e97323 https://www.encodeproject.org/files/ENCFF955OFB/@@download/ENCFF955OFB.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF455PUN fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF788SAX 3246283457 Michael Snyder, Stanford 0f159e1335217605ac4bfe68744100e0 SRA:SRR6213525 https://www.encodeproject.org/files/ENCFF455PUN/@@download/ENCFF455PUN.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF801ZZV fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF249RTD 4288142530 Michael Snyder, Stanford 9cd89801da1fc6e6c806622291ffe020 SRA:SRR6213526 https://www.encodeproject.org/files/ENCFF801ZZV/@@download/ENCFF801ZZV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF249RTD fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF801ZZV 3540937411 Michael Snyder, Stanford 2451c40de9cc40f6823921903f89493d SRA:SRR6213526 https://www.encodeproject.org/files/ENCFF249RTD/@@download/ENCFF249RTD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF788SAX fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF455PUN 3982561971 Michael Snyder, Stanford bc3a91f2425c493102142c7fcd040eee SRA:SRR6213525 https://www.encodeproject.org/files/ENCFF788SAX/@@download/ENCFF788SAX.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF032EMH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF788SAX, ENCFF807MUK 4291813145 ENCODE Processing Pipeline 9706617d46fa660edb5f9b670f07425b https://www.encodeproject.org/files/ENCFF032EMH/@@download/ENCFF032EMH.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF588PRI bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF788SAX, ENCFF807MUK 6916853827 ENCODE Processing Pipeline 9d28304bebb4318fb979c4c90dcbd419 https://www.encodeproject.org/files/ENCFF588PRI/@@download/ENCFF588PRI.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF778KDH bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF801ZZV, ENCFF807MUK 7366167719 ENCODE Processing Pipeline 5da30a61a84367434484119365faa7cc https://www.encodeproject.org/files/ENCFF778KDH/@@download/ENCFF778KDH.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF566BBU bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF801ZZV, ENCFF807MUK 5294110385 ENCODE Processing Pipeline 7482089cbec252e2cec78b07578fcf1e https://www.encodeproject.org/files/ENCFF566BBU/@@download/ENCFF566BBU.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF862UTF bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF643CGH, ENCFF788SAX 6919476129 ENCODE Processing Pipeline a8c4237944d573298ce2ffddd95ef2e8 https://www.encodeproject.org/files/ENCFF862UTF/@@download/ENCFF862UTF.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF723MRH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF643CGH, ENCFF788SAX 4298680582 ENCODE Processing Pipeline e01a5e39195a0b92867fbd7d2abf2ae2 https://www.encodeproject.org/files/ENCFF723MRH/@@download/ENCFF723MRH.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF106ICW bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF643CGH, ENCFF801ZZV 5303027342 ENCODE Processing Pipeline effd3b4185048a8199530bfaa9f792b9 https://www.encodeproject.org/files/ENCFF106ICW/@@download/ENCFF106ICW.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF503JBL bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF643CGH, ENCFF801ZZV 7368523120 ENCODE Processing Pipeline 72b44cad1b795b60440ec979813ab629 https://www.encodeproject.org/files/ENCFF503JBL/@@download/ENCFF503JBL.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF702TJG bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 1263875167 ENCODE Processing Pipeline 995a1297131398276be1bf26fdb763cb https://www.encodeproject.org/files/ENCFF702TJG/@@download/ENCFF702TJG.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF459IKA bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 1349175441 ENCODE Processing Pipeline 1712f606d8d8da2c8e27fae46af09790 https://www.encodeproject.org/files/ENCFF459IKA/@@download/ENCFF459IKA.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF451ABM bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 1779351195 ENCODE Processing Pipeline e8bfd6cd77ce0946ebc09b4c0b065177 https://www.encodeproject.org/files/ENCFF451ABM/@@download/ENCFF451ABM.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF736LSE bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 1839750126 ENCODE Processing Pipeline 2efc1555593a10969a7080a930d1cc4e https://www.encodeproject.org/files/ENCFF736LSE/@@download/ENCFF736LSE.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF828IPR bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 2335021134 ENCODE Processing Pipeline 8ac206b6d17277c981539fbb2618fa48 https://www.encodeproject.org/files/ENCFF828IPR/@@download/ENCFF828IPR.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF196DNQ bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 6996043 ENCODE Processing Pipeline 2ffb2cedd14f5f1fae7cb765a66d82a3 https://www.encodeproject.org/files/ENCFF196DNQ/@@download/ENCFF196DNQ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF475NYK bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF196DNQ 12735326 ENCODE Processing Pipeline 09f939330f7888261570e1dd3044efc2 https://www.encodeproject.org/files/ENCFF475NYK/@@download/ENCFF475NYK.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF018NNF bed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF161QAS, ENCFF196DNQ, ENCFF419RSJ, ENCFF928JXU 1284817 ENCODE Processing Pipeline 78c0e4753d04b238fc07e4ebe5a02984 https://www.encodeproject.org/files/ENCFF018NNF/@@download/ENCFF018NNF.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF173EHE bigBed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF018NNF 2498238 ENCODE Processing Pipeline 1b06aa6e88ddeb00ffb5b39f08f199e7 https://www.encodeproject.org/files/ENCFF173EHE/@@download/ENCFF173EHE.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF036HEK bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 2088960165 ENCODE Processing Pipeline dc208d21f874a0d4ed5fbfb341bb3f3c https://www.encodeproject.org/files/ENCFF036HEK/@@download/ENCFF036HEK.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF928JXU bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 7299325 ENCODE Processing Pipeline 3e67ac88348d8b816a8ca50ab94eeade https://www.encodeproject.org/files/ENCFF928JXU/@@download/ENCFF928JXU.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF161QAS bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 7315778 ENCODE Processing Pipeline 3ced11e76e28be3cde77c51cba484ca0 https://www.encodeproject.org/files/ENCFF161QAS/@@download/ENCFF161QAS.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF194OGF bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF928JXU 13079958 ENCODE Processing Pipeline 890134646890b9e25939706f1fb60d4f https://www.encodeproject.org/files/ENCFF194OGF/@@download/ENCFF194OGF.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF486OQM bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF161QAS 12925777 ENCODE Processing Pipeline e1a9819d93f58b381d6741e6fe00339d https://www.encodeproject.org/files/ENCFF486OQM/@@download/ENCFF486OQM.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF967IRT bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 1175344129 ENCODE Processing Pipeline 17bb6ac8d572633c06f9d2a2c9f2e43a https://www.encodeproject.org/files/ENCFF967IRT/@@download/ENCFF967IRT.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF041DRU bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 1853302288 ENCODE Processing Pipeline f2872ee76367f23409712b53e7d809df https://www.encodeproject.org/files/ENCFF041DRU/@@download/ENCFF041DRU.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF413ANK bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7205542 ENCODE Processing Pipeline f41e12ddd3b6c4ee6da2140d0feee1ea https://www.encodeproject.org/files/ENCFF413ANK/@@download/ENCFF413ANK.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF620ZOJ bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 1694977994 ENCODE Processing Pipeline 1424caee852f60b7b8ac7a3c79cc73d9 https://www.encodeproject.org/files/ENCFF620ZOJ/@@download/ENCFF620ZOJ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF405CHV bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 2371523180 ENCODE Processing Pipeline 572cd28e94c31dfb7693818fa305b1f1 https://www.encodeproject.org/files/ENCFF405CHV/@@download/ENCFF405CHV.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF173IKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF809OOE 2439723 ENCODE Processing Pipeline 051398d17fc702e9aeda829719529d28 https://www.encodeproject.org/files/ENCFF173IKQ/@@download/ENCFF173IKQ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF606RFP bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 1268578082 ENCODE Processing Pipeline c716b2475f5b3f5fb42565cba92d69aa https://www.encodeproject.org/files/ENCFF606RFP/@@download/ENCFF606RFP.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF176OVL bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 2096363364 ENCODE Processing Pipeline 3f2ae845c6cc32737a9a43cd8f91fdd2 https://www.encodeproject.org/files/ENCFF176OVL/@@download/ENCFF176OVL.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF526LHJ bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 7179543 ENCODE Processing Pipeline fe18eb06d6f26c1cde22b675086c68d4 https://www.encodeproject.org/files/ENCFF526LHJ/@@download/ENCFF526LHJ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF963HCJ bed narrowPeak peaks and background as input for IDR ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7164736 ENCODE Processing Pipeline 039c388c95fdaa3efb9c4ed44ccee9df https://www.encodeproject.org/files/ENCFF963HCJ/@@download/ENCFF963HCJ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF431IKZ bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF963HCJ 12918542 ENCODE Processing Pipeline 0de536d9bc6bac5026b0405d39f3edff https://www.encodeproject.org/files/ENCFF431IKZ/@@download/ENCFF431IKZ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF499ECU bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF526LHJ 12954768 ENCODE Processing Pipeline dabb470486504128f4256f829fb8d586 https://www.encodeproject.org/files/ENCFF499ECU/@@download/ENCFF499ECU.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF943RZR bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF413ANK 12789142 ENCODE Processing Pipeline c62410df13820412f95b16d18c3cb53b https://www.encodeproject.org/files/ENCFF943RZR/@@download/ENCFF943RZR.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF809OOE bed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF413ANK, ENCFF526LHJ, ENCFF963HCJ 1251501 ENCODE Processing Pipeline 9dc6f420639e0a265f3f179b6b42713a https://www.encodeproject.org/files/ENCFF809OOE/@@download/ENCFF809OOE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF907HHY fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF237EAI 2873329450 Michael Snyder, Stanford 16fcec22af4a0f5323a367d552dbe47b SRA:SRR6214306 https://www.encodeproject.org/files/ENCFF907HHY/@@download/ENCFF907HHY.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF237EAI fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF907HHY 3310216178 Michael Snyder, Stanford 9b1083ac60834a1c347b2d448b9eb834 SRA:SRR6214306 https://www.encodeproject.org/files/ENCFF237EAI/@@download/ENCFF237EAI.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF608RBJ fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF870NUU 2697256746 Michael Snyder, Stanford 580b9fa1a4e5c392bb039dc75ebb4b04 SRA:SRR6214307 https://www.encodeproject.org/files/ENCFF608RBJ/@@download/ENCFF608RBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF870NUU fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF608RBJ 2721533371 Michael Snyder, Stanford 16ec96f41be4dec5430b56cfcfdce3d7 SRA:SRR6214307 https://www.encodeproject.org/files/ENCFF870NUU/@@download/ENCFF870NUU.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF190SRK bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF807MUK, ENCFF870NUU 5156059749 ENCODE Processing Pipeline de9d5070aad20d044ec6e94770cf31f7 https://www.encodeproject.org/files/ENCFF190SRK/@@download/ENCFF190SRK.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF703YIF bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF807MUK, ENCFF907HHY 5851920984 ENCODE Processing Pipeline 6dd26b211ff42f8e311d9a50bad53d39 https://www.encodeproject.org/files/ENCFF703YIF/@@download/ENCFF703YIF.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF635MJX bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF643CGH, ENCFF870NUU 5160887560 ENCODE Processing Pipeline bb59571121aacf25ebab0a36f5e514f2 https://www.encodeproject.org/files/ENCFF635MJX/@@download/ENCFF635MJX.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF157MZW bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF643CGH, ENCFF907HHY 5858291712 ENCODE Processing Pipeline bf325a933f8ac5f24694b2dc220b56e3 https://www.encodeproject.org/files/ENCFF157MZW/@@download/ENCFF157MZW.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF466DBM bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF807MUK, ENCFF907HHY 4685546093 ENCODE Processing Pipeline 08e4455f00c73d3aced728b0a9adca63 https://www.encodeproject.org/files/ENCFF466DBM/@@download/ENCFF466DBM.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF577SKC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF643CGH, ENCFF907HHY 4691944629 ENCODE Processing Pipeline ad07f54fd39ab8dc1ff19325b0df71c3 https://www.encodeproject.org/files/ENCFF577SKC/@@download/ENCFF577SKC.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF593EWE bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF807MUK, ENCFF870NUU 4033549977 ENCODE Processing Pipeline 7f832029626014bd59b41d543849151e https://www.encodeproject.org/files/ENCFF593EWE/@@download/ENCFF593EWE.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF252GCC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF643CGH, ENCFF870NUU 4038531531 ENCODE Processing Pipeline 3b9e01759834231190af49b23416472a https://www.encodeproject.org/files/ENCFF252GCC/@@download/ENCFF252GCC.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF736WSI bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 6893404 ENCODE Processing Pipeline 252b55c4550ec6b08124dd53f6f0a2e4 https://www.encodeproject.org/files/ENCFF736WSI/@@download/ENCFF736WSI.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF747QQE bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF589PUL 13227761 ENCODE Processing Pipeline 66058a6732972198b22c06fa581852da https://www.encodeproject.org/files/ENCFF747QQE/@@download/ENCFF747QQE.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF378UWE bigBed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF513RIQ 783743 ENCODE Processing Pipeline f42badd111ffe85851e04ef24d888a50 https://www.encodeproject.org/files/ENCFF378UWE/@@download/ENCFF378UWE.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF986KIH bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 1791689450 ENCODE Processing Pipeline 7e8122b99d3e8c41b70d067ff6321210 https://www.encodeproject.org/files/ENCFF986KIH/@@download/ENCFF986KIH.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF376CMK bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF021SAT 13312390 ENCODE Processing Pipeline b0a58e07f4ce2d6201408ff567e7f46a https://www.encodeproject.org/files/ENCFF376CMK/@@download/ENCFF376CMK.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF807UJN bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 1304442544 ENCODE Processing Pipeline 18d69801f771b88a9c4248562104078a https://www.encodeproject.org/files/ENCFF807UJN/@@download/ENCFF807UJN.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF427RVD bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 1835812805 ENCODE Processing Pipeline 11d0da16d3729da4e793115116856fb2 https://www.encodeproject.org/files/ENCFF427RVD/@@download/ENCFF427RVD.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF142VQQ bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 1865459873 ENCODE Processing Pipeline 33bb0d74d5bbfb1823eac7ad9ad33bfd https://www.encodeproject.org/files/ENCFF142VQQ/@@download/ENCFF142VQQ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF998OVR bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 2359855282 ENCODE Processing Pipeline d3e25ec933f9d89cbe07e964f61a8e2d https://www.encodeproject.org/files/ENCFF998OVR/@@download/ENCFF998OVR.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF357FTH bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF736WSI 13272512 ENCODE Processing Pipeline 6a81aa2b046344c1c0ab8f229870cc65 https://www.encodeproject.org/files/ENCFF357FTH/@@download/ENCFF357FTH.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF244JWN bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 1334384565 ENCODE Processing Pipeline d8367d015c6d65eeb63ad6b97c0d8d21 https://www.encodeproject.org/files/ENCFF244JWN/@@download/ENCFF244JWN.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF021SAT bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 7094220 ENCODE Processing Pipeline c0ae0e7431a531a017941e22c329a15d https://www.encodeproject.org/files/ENCFF021SAT/@@download/ENCFF021SAT.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF589PUL bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 7302425 ENCODE Processing Pipeline a61019e264390503295090085647a3da https://www.encodeproject.org/files/ENCFF589PUL/@@download/ENCFF589PUL.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF165XUL bed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021SAT, ENCFF589PUL, ENCFF736WSI 272201 ENCODE Processing Pipeline c0d41935971600e35134399ca56de319 https://www.encodeproject.org/files/ENCFF165XUL/@@download/ENCFF165XUL.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF918SNN bigBed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF165XUL 586929 ENCODE Processing Pipeline ba34bc46ba180021514d85c9930a3a40 https://www.encodeproject.org/files/ENCFF918SNN/@@download/ENCFF918SNN.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF513RIQ bed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021SAT, ENCFF589PUL, ENCFF736WSI 393714 ENCODE Processing Pipeline d44225226240074d5eaa115e9fe46731 https://www.encodeproject.org/files/ENCFF513RIQ/@@download/ENCFF513RIQ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF488AES bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 1859325091 ENCODE Processing Pipeline c2d76bf9c776467b207f56536ebad818 https://www.encodeproject.org/files/ENCFF488AES/@@download/ENCFF488AES.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF632OKL bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM 13236764 ENCODE Processing Pipeline 899e237ee90625fb91a8b89414e2e203 https://www.encodeproject.org/files/ENCFF632OKL/@@download/ENCFF632OKL.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF631CIU bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 1802726530 ENCODE Processing Pipeline 416085dd206e01639eb61694abd5d327 https://www.encodeproject.org/files/ENCFF631CIU/@@download/ENCFF631CIU.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF568SOZ bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 2201972902 ENCODE Processing Pipeline 544e3d0c4ac74b176b51320b2f5e048f https://www.encodeproject.org/files/ENCFF568SOZ/@@download/ENCFF568SOZ.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF700YOH bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 2354204168 ENCODE Processing Pipeline 8c143cff58a0422bf8d6e70074d4c01c https://www.encodeproject.org/files/ENCFF700YOH/@@download/ENCFF700YOH.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF281RZB bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 7097224 ENCODE Processing Pipeline 7bb7eb0e17e0464b24f46273ea6bf421 https://www.encodeproject.org/files/ENCFF281RZB/@@download/ENCFF281RZB.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF851KJE bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 6889845 ENCODE Processing Pipeline cc1a5950be48f7314a20fe1668c90e12 https://www.encodeproject.org/files/ENCFF851KJE/@@download/ENCFF851KJE.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF232LTK bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 1286788700 ENCODE Processing Pipeline 6992f2de452cce3fc76b2f9fc43a200b https://www.encodeproject.org/files/ENCFF232LTK/@@download/ENCFF232LTK.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF071XPM bed narrowPeak peaks and background as input for IDR ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 7307689 ENCODE Processing Pipeline b0ea5ec7da4275f8fd5346756b84a819 https://www.encodeproject.org/files/ENCFF071XPM/@@download/ENCFF071XPM.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF421RSI bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF281RZB 13322441 ENCODE Processing Pipeline 53e6d3d1b66d995e66d7e6c4139363a2 https://www.encodeproject.org/files/ENCFF421RSI/@@download/ENCFF421RSI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF085OLL bigBed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF200SLC 797798 ENCODE Processing Pipeline 6764afa68d685e59a399ad27a7597c55 https://www.encodeproject.org/files/ENCFF085OLL/@@download/ENCFF085OLL.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF892ZNV bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 1144052721 ENCODE Processing Pipeline caa541dc9555dac262dc82063e340984 https://www.encodeproject.org/files/ENCFF892ZNV/@@download/ENCFF892ZNV.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF944XBK bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF851KJE 13277153 ENCODE Processing Pipeline f39f168181d86be2fe2c9ccc80a1ec1b https://www.encodeproject.org/files/ENCFF944XBK/@@download/ENCFF944XBK.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF204RPR bed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM, ENCFF281RZB, ENCFF419RSJ, ENCFF851KJE 272205 ENCODE Processing Pipeline 1a485b08760b9079857e54f9257f77eb https://www.encodeproject.org/files/ENCFF204RPR/@@download/ENCFF204RPR.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF371ADG bigBed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF204RPR 587790 ENCODE Processing Pipeline 5416cc5a67323d8f93177c557fc66b66 https://www.encodeproject.org/files/ENCFF371ADG/@@download/ENCFF371ADG.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF200SLC bed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM, ENCFF281RZB, ENCFF419RSJ, ENCFF851KJE 402143 ENCODE Processing Pipeline 497113d1d2e932e9a95395c0aed4fa20 https://www.encodeproject.org/files/ENCFF200SLC/@@download/ENCFF200SLC.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF000VXJ bigBed narrowPeak peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEM 119593 Sherman Weissman, Yale 1e56b9104a633ba5c817b6161ba36dea https://www.encodeproject.org/files/ENCFF000VXJ/@@download/ENCFF000VXJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VXK bigWig signal ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 264476048 Sherman Weissman, Yale deed005ead52aa1fccb8b36372e97f22 https://www.encodeproject.org/files/ENCFF000VXK/@@download/ENCFF000VXK.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000VXL bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VYD 182771510 Sherman Weissman, Yale 561ae5ec116854778eeec37a5f868f8e https://www.encodeproject.org/files/ENCFF000VXL/@@download/ENCFF000VXL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VXM bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VYE 215980387 Sherman Weissman, Yale 8712f61f06f2f8e0bf618edd5edd36b0 https://www.encodeproject.org/files/ENCFF000VXM/@@download/ENCFF000VXM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VYD fastq reads ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 141518360 Sherman Weissman, Yale 9c16ef87580d58b87d991ab7f5c46d4d https://www.encodeproject.org/files/ENCFF000VYD/@@download/ENCFF000VYD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF000VYE fastq reads ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 168711450 Sherman Weissman, Yale 5ed626f35f46828d860d42a8f1a83c6f https://www.encodeproject.org/files/ENCFF000VYE/@@download/ENCFF000VYE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF001VEM bed narrowPeak peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 24502 Sherman Weissman, Yale fcccd0ed536c0c17929a02785f58bb49 https://www.encodeproject.org/files/ENCFF001VEM/@@download/ENCFF001VEM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002COV bed narrowPeak optimal idr thresholded peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 54938 ENCODE Consortium Analysis Working Group 1624be090891349e91ac01a901993f79 https://www.encodeproject.org/files/ENCFF002COV/@@download/ENCFF002COV.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF859INR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COV 142879 ENCODE Consortium fd85359b2636095b376fa6eda7bce351 https://www.encodeproject.org/files/ENCFF859INR/@@download/ENCFF859INR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VWX bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 527324067 Michael Snyder, Stanford ac50ee8aa72ed7e9ab91fcb8580441a0 https://www.encodeproject.org/files/ENCFF000VWX/@@download/ENCFF000VWX.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VWY bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 372370718 Michael Snyder, Stanford 4369d89fa777744d5354011d96d45260 https://www.encodeproject.org/files/ENCFF000VWY/@@download/ENCFF000VWY.bam hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VWZ bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VEL 171652 Michael Snyder, Stanford c556a0f35d1ee97f1640a32da735860d https://www.encodeproject.org/files/ENCFF000VWZ/@@download/ENCFF000VWZ.bigBed hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VXA fastq reads ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 925686314 Michael Snyder, Stanford 266a921f5e9a8ebacf43048f01fbf3a9 https://www.encodeproject.org/files/ENCFF000VXA/@@download/ENCFF000VXA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VXC fastq reads ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 691944846 Michael Snyder, Stanford 75d5f0d8503011f656faca861e19e78f https://www.encodeproject.org/files/ENCFF000VXC/@@download/ENCFF000VXC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VXF bigWig signal ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 465436268 Michael Snyder, Stanford 0b93d2f124b2d7034f942bd5974cfd84 https://www.encodeproject.org/files/ENCFF000VXF/@@download/ENCFF000VXF.bigWig hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001VEL bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 57993 Michael Snyder, Stanford 145c3dff7d66fde17883776c2756fd77 https://www.encodeproject.org/files/ENCFF001VEL/@@download/ENCFF001VEL.bed.gz hg19 archived moderate library complexity, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF491RPU bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF643CGH 1069976283 ENCODE Processing Pipeline b3860b1abee7a1a3ed6bfb3ef6171bf0 https://www.encodeproject.org/files/ENCFF491RPU/@@download/ENCFF491RPU.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF411KDZ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF643CGH 449059427 ENCODE Processing Pipeline a4f1e314c81f80c43d7f76d8437483d1 https://www.encodeproject.org/files/ENCFF411KDZ/@@download/ENCFF411KDZ.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF055FUM bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF643CGH 764474509 ENCODE Processing Pipeline 307987d51e3793061026934d6ef602ee https://www.encodeproject.org/files/ENCFF055FUM/@@download/ENCFF055FUM.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF764KYI bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF643CGH 724350577 ENCODE Processing Pipeline 914afbbcbeccada93f582d84cd8849cb https://www.encodeproject.org/files/ENCFF764KYI/@@download/ENCFF764KYI.bam GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF425XHS bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF807MUK 761483254 ENCODE Processing Pipeline 6d24a4a2a575616ed1dcb38e0935cc2c https://www.encodeproject.org/files/ENCFF425XHS/@@download/ENCFF425XHS.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF025JEN bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF807MUK 448374896 ENCODE Processing Pipeline e5651e06c4dec1e9898dd8554e7007e2 https://www.encodeproject.org/files/ENCFF025JEN/@@download/ENCFF025JEN.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF860UYK bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF807MUK 1064592495 ENCODE Processing Pipeline d535e98a97ecb95194bf422a4c49cedc https://www.encodeproject.org/files/ENCFF860UYK/@@download/ENCFF860UYK.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF028CUJ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF807MUK 723896147 ENCODE Processing Pipeline 62683d712fc45b064d5dabda0101c4df https://www.encodeproject.org/files/ENCFF028CUJ/@@download/ENCFF028CUJ.bam hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF235TOZ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 254770164 ENCODE Processing Pipeline 20bb421affb29d6a6b49b18d832c9bad https://www.encodeproject.org/files/ENCFF235TOZ/@@download/ENCFF235TOZ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF258LKL bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 348935092 ENCODE Processing Pipeline 5db2e9a0525d62404aff45cc789df4e9 https://www.encodeproject.org/files/ENCFF258LKL/@@download/ENCFF258LKL.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF505IBJ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 537793367 ENCODE Processing Pipeline 2d54d21431058e8bddd023c4c710f784 https://www.encodeproject.org/files/ENCFF505IBJ/@@download/ENCFF505IBJ.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF435ICE bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 4619469 ENCODE Processing Pipeline 571fecc1b309ea7b6d93788e76acc371 https://www.encodeproject.org/files/ENCFF435ICE/@@download/ENCFF435ICE.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF092QPA bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF033WHB 10213956 ENCODE Processing Pipeline 4ac24cec993cebd2e1d79b6f537a894b https://www.encodeproject.org/files/ENCFF092QPA/@@download/ENCFF092QPA.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF538WOP bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 513783084 ENCODE Processing Pipeline ed19922e025054961e639f7e047e8359 https://www.encodeproject.org/files/ENCFF538WOP/@@download/ENCFF538WOP.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF143UMU bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF811UJD 10599246 ENCODE Processing Pipeline 53be16a92446bc5d42a42ec456e7e636 https://www.encodeproject.org/files/ENCFF143UMU/@@download/ENCFF143UMU.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF838IXM bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 448271204 ENCODE Processing Pipeline 8277ad060bf6bd881d31a3c5557b2045 https://www.encodeproject.org/files/ENCFF838IXM/@@download/ENCFF838IXM.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF794AGY bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 445159602 ENCODE Processing Pipeline 8811cabdf913287bd524e56c94049459 https://www.encodeproject.org/files/ENCFF794AGY/@@download/ENCFF794AGY.bigWig hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF811UJD bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 4081503 ENCODE Processing Pipeline 1ae70b98294604a21ef015e2422e3613 https://www.encodeproject.org/files/ENCFF811UJD/@@download/ENCFF811UJD.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF033WHB bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 3997652 ENCODE Processing Pipeline 9f73e493214f321be84d88fcc40ae23d https://www.encodeproject.org/files/ENCFF033WHB/@@download/ENCFF033WHB.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF289XWN bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF435ICE 11007145 ENCODE Processing Pipeline cf1d35e12097db7628dab2d2cbad7356 https://www.encodeproject.org/files/ENCFF289XWN/@@download/ENCFF289XWN.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF017BUS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF321KTX 257133 ENCODE Processing Pipeline 69a2d2021f01345e0a879aed8f77ec17 https://www.encodeproject.org/files/ENCFF017BUS/@@download/ENCFF017BUS.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF831SXV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF556PIY 266241 ENCODE Processing Pipeline 3aa3a246f5337989aa6dc9f526c7375e https://www.encodeproject.org/files/ENCFF831SXV/@@download/ENCFF831SXV.bigBed hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF321KTX bed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF033WHB, ENCFF435ICE, ENCFF811UJD 132180 ENCODE Processing Pipeline 87f794238885febeecd10c7eea660d3e https://www.encodeproject.org/files/ENCFF321KTX/@@download/ENCFF321KTX.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF556PIY bed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF033WHB, ENCFF435ICE, ENCFF811UJD 138991 ENCODE Processing Pipeline c91d4953e458d7a3d972d8ce9494ff67 https://www.encodeproject.org/files/ENCFF556PIY/@@download/ENCFF556PIY.bed.gz hg19 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF648LLP bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 253093287 ENCODE Processing Pipeline 20a6afa1b84daf3cc0533e38acc15d99 https://www.encodeproject.org/files/ENCFF648LLP/@@download/ENCFF648LLP.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF656JQS bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 4603939 ENCODE Processing Pipeline a4acc92bdb0d19ad4b90efe6515bef91 https://www.encodeproject.org/files/ENCFF656JQS/@@download/ENCFF656JQS.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF189BQS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF330LVI 257249 ENCODE Processing Pipeline c96b5a22b44c6cdba4ae66374548b094 https://www.encodeproject.org/files/ENCFF189BQS/@@download/ENCFF189BQS.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF184LOY bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF357LJN 10206367 ENCODE Processing Pipeline 11a62e21a04a95c0d93cf5f478198fa1 https://www.encodeproject.org/files/ENCFF184LOY/@@download/ENCFF184LOY.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF161QQL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF873DJD 266375 ENCODE Processing Pipeline 4969352cc9a7698ae67f288079201f5b https://www.encodeproject.org/files/ENCFF161QQL/@@download/ENCFF161QQL.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF187LTW bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 4077365 ENCODE Processing Pipeline 74ab1089f76a72f26b83b8b36f072586 https://www.encodeproject.org/files/ENCFF187LTW/@@download/ENCFF187LTW.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF405FHW bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF187LTW 10595746 ENCODE Processing Pipeline d1b6954af42dfeaa995d4fdd8032c6a7 https://www.encodeproject.org/files/ENCFF405FHW/@@download/ENCFF405FHW.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF482EVT bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF656JQS 11015538 ENCODE Processing Pipeline 1a289a034374693a43411e8fa027f803 https://www.encodeproject.org/files/ENCFF482EVT/@@download/ENCFF482EVT.bigBed GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF830VPV bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 445484778 ENCODE Processing Pipeline 596640125d3781869722dfe1facc09aa https://www.encodeproject.org/files/ENCFF830VPV/@@download/ENCFF830VPV.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF328OWO bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 513886937 ENCODE Processing Pipeline e7d01f3e00f2af8c8384da26afedee8c https://www.encodeproject.org/files/ENCFF328OWO/@@download/ENCFF328OWO.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF116XIJ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 532337230 ENCODE Processing Pipeline 1691197304c8f26d6cc1a59f657d21e8 https://www.encodeproject.org/files/ENCFF116XIJ/@@download/ENCFF116XIJ.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF330LVI bed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF187LTW, ENCFF357LJN, ENCFF419RSJ, ENCFF656JQS 131732 ENCODE Processing Pipeline b1f71ec57a0c15c823ff4d9f025c59fe https://www.encodeproject.org/files/ENCFF330LVI/@@download/ENCFF330LVI.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF549EWS bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 407639253 ENCODE Processing Pipeline f5c2a3cb26f69109866de549c84d28f8 https://www.encodeproject.org/files/ENCFF549EWS/@@download/ENCFF549EWS.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF431APC bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 349384053 ENCODE Processing Pipeline 7db2acf585920873c2e0337b1edd1c13 https://www.encodeproject.org/files/ENCFF431APC/@@download/ENCFF431APC.bigWig GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF357LJN bed narrowPeak peaks and background as input for IDR ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 3990922 ENCODE Processing Pipeline 764c1b37896ad5925f2664f8c0a1efe7 https://www.encodeproject.org/files/ENCFF357LJN/@@download/ENCFF357LJN.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF873DJD bed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF187LTW, ENCFF357LJN, ENCFF419RSJ, ENCFF656JQS 138348 ENCODE Processing Pipeline 9956439a5b1ebf7e4f2585542b722f80 https://www.encodeproject.org/files/ENCFF873DJD/@@download/ENCFF873DJD.bed.gz GRCh38 released moderate library complexity, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF238XIH fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF183QAJ 2491540327 Michael Snyder, Stanford 9358ab6230fe616f1492e15c4df63ecb SRA:SRR6214035 https://www.encodeproject.org/files/ENCFF238XIH/@@download/ENCFF238XIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF183QAJ fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF238XIH 2498152327 Michael Snyder, Stanford 53c09f9aad4c9798ca4c19ed32a06990 SRA:SRR6214035 https://www.encodeproject.org/files/ENCFF183QAJ/@@download/ENCFF183QAJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF431UPR fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF530OLZ 3319197958 Michael Snyder, Stanford 1f4749b1ca0d7008bd7bd101058cce0f SRA:SRR6214034 https://www.encodeproject.org/files/ENCFF431UPR/@@download/ENCFF431UPR.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF530OLZ fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF431UPR 2917698023 Michael Snyder, Stanford 2c63339c9f1d5af5b0de393265e27eee SRA:SRR6214034 https://www.encodeproject.org/files/ENCFF530OLZ/@@download/ENCFF530OLZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF252ZMP bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF807MUK 4273213264 ENCODE Processing Pipeline 7c8d83aa8f2c06d8b891835974d3281d https://www.encodeproject.org/files/ENCFF252ZMP/@@download/ENCFF252ZMP.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF744FOT bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF643CGH 4271564469 ENCODE Processing Pipeline d64c8d9384c5bba4137f7327d6ccc6e8 https://www.encodeproject.org/files/ENCFF744FOT/@@download/ENCFF744FOT.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF844WSE bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF807MUK 5400181038 ENCODE Processing Pipeline a43bf24cb1e25b7d064fc827401fdf56 https://www.encodeproject.org/files/ENCFF844WSE/@@download/ENCFF844WSE.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF239NLE bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF643CGH 5398079190 ENCODE Processing Pipeline e0595dfa29d8b723102753c2264341f3 https://www.encodeproject.org/files/ENCFF239NLE/@@download/ENCFF239NLE.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF112UBX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF643CGH 2620812375 ENCODE Processing Pipeline 5aee8da56116d72d05be57fc74c989f3 https://www.encodeproject.org/files/ENCFF112UBX/@@download/ENCFF112UBX.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF455LNX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF807MUK 2617638268 ENCODE Processing Pipeline a7e3697ec3cc12c498f71b29ed59b680 https://www.encodeproject.org/files/ENCFF455LNX/@@download/ENCFF455LNX.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF194UHW bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF807MUK 3438886199 ENCODE Processing Pipeline 0fa9c81384860ddcfaad6f7a7d0b4c5c https://www.encodeproject.org/files/ENCFF194UHW/@@download/ENCFF194UHW.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF116EPL bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF643CGH 3444103327 ENCODE Processing Pipeline 3e18f20a967992ad4ab4a304a8489d45 https://www.encodeproject.org/files/ENCFF116EPL/@@download/ENCFF116EPL.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF429JYW bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 1197871351 ENCODE Processing Pipeline be1cff0efce7f4e3f098184bbeb5cf20 https://www.encodeproject.org/files/ENCFF429JYW/@@download/ENCFF429JYW.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF079KFT bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 1815824865 ENCODE Processing Pipeline 318c9a9e07e132ef05dd5599bf1dd7e5 https://www.encodeproject.org/files/ENCFF079KFT/@@download/ENCFF079KFT.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF731GMX bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 1014423623 ENCODE Processing Pipeline 31d34cfcfb0374199a082435de3016c6 https://www.encodeproject.org/files/ENCFF731GMX/@@download/ENCFF731GMX.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF582GYD bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 998570546 ENCODE Processing Pipeline 430069e37b8520015daad7de59960cc2 https://www.encodeproject.org/files/ENCFF582GYD/@@download/ENCFF582GYD.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF301EBX bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 1217353019 ENCODE Processing Pipeline 637322679939264e2a603c67ec0d1602 https://www.encodeproject.org/files/ENCFF301EBX/@@download/ENCFF301EBX.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF827HKI bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 2092979934 ENCODE Processing Pipeline bce4dae34b858100080b6243b12a369b https://www.encodeproject.org/files/ENCFF827HKI/@@download/ENCFF827HKI.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF601WVR bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 5571610 ENCODE Processing Pipeline b3900061f42ddea7742208c0ace9f16a https://www.encodeproject.org/files/ENCFF601WVR/@@download/ENCFF601WVR.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF531FOV bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 5986594 ENCODE Processing Pipeline 54a5acef1203551a9692d93b280d8fca https://www.encodeproject.org/files/ENCFF531FOV/@@download/ENCFF531FOV.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF595TGO bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 6954838 ENCODE Processing Pipeline 5bc39d46231bd3351c729d95af5c07b9 https://www.encodeproject.org/files/ENCFF595TGO/@@download/ENCFF595TGO.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF373XGW bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF601WVR 11479615 ENCODE Processing Pipeline 382124c6b43f14a34c0b01c82e75b41c https://www.encodeproject.org/files/ENCFF373XGW/@@download/ENCFF373XGW.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF723UCP bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF531FOV 11481776 ENCODE Processing Pipeline 2caefa77987c5dd992bbf83d269931a9 https://www.encodeproject.org/files/ENCFF723UCP/@@download/ENCFF723UCP.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF661AIZ bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF595TGO 11419472 ENCODE Processing Pipeline ea8768d9113076ed35ec332015a12c5b https://www.encodeproject.org/files/ENCFF661AIZ/@@download/ENCFF661AIZ.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF237IPT bed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF531FOV, ENCFF595TGO, ENCFF601WVR 210893 ENCODE Processing Pipeline 1148d4d190f740ca04d1da1c3c130161 https://www.encodeproject.org/files/ENCFF237IPT/@@download/ENCFF237IPT.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF603BBW bigBed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF237IPT 440362 ENCODE Processing Pipeline 146a5cc8db0be65e8f8398f83abad264 https://www.encodeproject.org/files/ENCFF603BBW/@@download/ENCFF603BBW.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF017LZE bed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF531FOV, ENCFF595TGO, ENCFF601WVR 290462 ENCODE Processing Pipeline 67d4968a8aa146ff684f8bb6aabb0364 https://www.encodeproject.org/files/ENCFF017LZE/@@download/ENCFF017LZE.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF849JFR bigBed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF017LZE 553463 ENCODE Processing Pipeline 91d7f391ef67745616ba798c8e736f66 https://www.encodeproject.org/files/ENCFF849JFR/@@download/ENCFF849JFR.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF897RYA bed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY, ENCFF419RSJ, ENCFF461PBL, ENCFF997PZQ 297733 ENCODE Processing Pipeline 96759423f9fb968337e86fbc634eae3c https://www.encodeproject.org/files/ENCFF897RYA/@@download/ENCFF897RYA.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF623CWL bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 892109262 ENCODE Processing Pipeline 05ca5dce4070d9e4474db89c55ea91ec https://www.encodeproject.org/files/ENCFF623CWL/@@download/ENCFF623CWL.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF013ZOI bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 2068126118 ENCODE Processing Pipeline 4e89c8134d7867ad5db4a6bbe60f917a https://www.encodeproject.org/files/ENCFF013ZOI/@@download/ENCFF013ZOI.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF461PBL bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 5569235 ENCODE Processing Pipeline c0694eea61fab6cd5c81203699250ebe https://www.encodeproject.org/files/ENCFF461PBL/@@download/ENCFF461PBL.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF997PZQ bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 5992084 ENCODE Processing Pipeline 0ef227b472b149acd58722e5c1e1b58d https://www.encodeproject.org/files/ENCFF997PZQ/@@download/ENCFF997PZQ.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF262WGY bed narrowPeak peaks and background as input for IDR ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 7016466 ENCODE Processing Pipeline 80b7c712eff25a14e6fc84bffb0fd44b https://www.encodeproject.org/files/ENCFF262WGY/@@download/ENCFF262WGY.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF965FWA bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 1005980891 ENCODE Processing Pipeline c1b6b9262f6c249dbfd06688c8093558 https://www.encodeproject.org/files/ENCFF965FWA/@@download/ENCFF965FWA.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF300YEH bed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY, ENCFF419RSJ, ENCFF461PBL, ENCFF997PZQ 219037 ENCODE Processing Pipeline e0a4f748bb05851856eca600bd9d722f https://www.encodeproject.org/files/ENCFF300YEH/@@download/ENCFF300YEH.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF703EGZ bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 1222770542 ENCODE Processing Pipeline 156a13bcde764bfff6ee4877cff9558b https://www.encodeproject.org/files/ENCFF703EGZ/@@download/ENCFF703EGZ.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF517OHQ bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 1225906922 ENCODE Processing Pipeline cb22869f41c43dd80b255d0531889967 https://www.encodeproject.org/files/ENCFF517OHQ/@@download/ENCFF517OHQ.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF373SDO bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF461PBL 11489531 ENCODE Processing Pipeline c3028f8b1db92422615164ef19580fc0 https://www.encodeproject.org/files/ENCFF373SDO/@@download/ENCFF373SDO.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF021XED bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF997PZQ 11506084 ENCODE Processing Pipeline 1f7edec78a83780482b460eb846230e8 https://www.encodeproject.org/files/ENCFF021XED/@@download/ENCFF021XED.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF265XQE bigBed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF300YEH 451477 ENCODE Processing Pipeline 1f465bda1f51599ad66cf675379f0d18 https://www.encodeproject.org/files/ENCFF265XQE/@@download/ENCFF265XQE.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF343HCK bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 1644552938 ENCODE Processing Pipeline 4fb469dd10d1ade76d0f84ed8496c046 https://www.encodeproject.org/files/ENCFF343HCK/@@download/ENCFF343HCK.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF920RLG bigBed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF897RYA 565071 ENCODE Processing Pipeline 84812dd0fcc0732dd6722307479417fa https://www.encodeproject.org/files/ENCFF920RLG/@@download/ENCFF920RLG.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF502HSY bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY 11453742 ENCODE Processing Pipeline 93bac8f00fd27bef60b6fe1d3cad875a https://www.encodeproject.org/files/ENCFF502HSY/@@download/ENCFF502HSY.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF814SDG fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF862VDD 3787857076 Michael Snyder, Stanford 7c50ba44b4d550937c80ea761796cf07 SRA:SRR6214113 https://www.encodeproject.org/files/ENCFF814SDG/@@download/ENCFF814SDG.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF164VNM fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF825EGN 2779990075 Michael Snyder, Stanford 546024629db1c6f1a6b3df803780c06b SRA:SRR6214114 https://www.encodeproject.org/files/ENCFF164VNM/@@download/ENCFF164VNM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF825EGN fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF164VNM 3240476924 Michael Snyder, Stanford 5319b3159249aa2d434e110871989b72 SRA:SRR6214114 https://www.encodeproject.org/files/ENCFF825EGN/@@download/ENCFF825EGN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF862VDD fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF814SDG 3289215053 Michael Snyder, Stanford e0f4fa24473906614cf4a21cdd4daf85 SRA:SRR6214113 https://www.encodeproject.org/files/ENCFF862VDD/@@download/ENCFF862VDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released antibody characterized with exemption, mild to moderate bottlenecking ENCFF437STA bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF807MUK, ENCFF814SDG, ENCFF862VDD 6389930203 ENCODE Processing Pipeline a5436d7a1e4dd81fe2cfef9f657e49d6 https://www.encodeproject.org/files/ENCFF437STA/@@download/ENCFF437STA.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF772RMA bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF807MUK, ENCFF814SDG, ENCFF862VDD 4849524510 ENCODE Processing Pipeline 839f252392e307f792a119aff38aa6eb https://www.encodeproject.org/files/ENCFF772RMA/@@download/ENCFF772RMA.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF723QVM bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF807MUK, ENCFF825EGN 5630191912 ENCODE Processing Pipeline 59d664a61eb77d0044054bec6ad78a04 https://www.encodeproject.org/files/ENCFF723QVM/@@download/ENCFF723QVM.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF560XEW bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF807MUK, ENCFF825EGN 4486306129 ENCODE Processing Pipeline ec3d53e71d5bde7528d14412eca67bc5 https://www.encodeproject.org/files/ENCFF560XEW/@@download/ENCFF560XEW.bam hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF555KDG bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF643CGH, ENCFF825EGN 5635462643 ENCODE Processing Pipeline f936719c034ea1e4cf46ffcb4800884d https://www.encodeproject.org/files/ENCFF555KDG/@@download/ENCFF555KDG.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF028TNY bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF643CGH, ENCFF825EGN 4492061205 ENCODE Processing Pipeline 9b69a61e235305aa48b3fc03e4b47715 https://www.encodeproject.org/files/ENCFF028TNY/@@download/ENCFF028TNY.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF816AFX bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF643CGH, ENCFF814SDG, ENCFF862VDD 6394037043 ENCODE Processing Pipeline 7830680c69f16398baeac5e7ce2f3f94 https://www.encodeproject.org/files/ENCFF816AFX/@@download/ENCFF816AFX.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF444PPF bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF643CGH, ENCFF814SDG, ENCFF862VDD 4855928085 ENCODE Processing Pipeline 919d369099b2f65cccd03688e7a51e7a https://www.encodeproject.org/files/ENCFF444PPF/@@download/ENCFF444PPF.bam GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF451BXE bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 1644610176 ENCODE Processing Pipeline b97cb5924e28d9c04f326ac9709f6290 https://www.encodeproject.org/files/ENCFF451BXE/@@download/ENCFF451BXE.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF755RSS bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 2381794349 ENCODE Processing Pipeline 6ca2ad9e0a829b2726462e8ecaa1c22b https://www.encodeproject.org/files/ENCFF755RSS/@@download/ENCFF755RSS.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF206EJR bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 1494333242 ENCODE Processing Pipeline 51d86a6c35eb61d314a9f6ce5100f7ba https://www.encodeproject.org/files/ENCFF206EJR/@@download/ENCFF206EJR.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF244PNH bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 6962772 ENCODE Processing Pipeline a597a04e19cbee928bc7ce829def9157 https://www.encodeproject.org/files/ENCFF244PNH/@@download/ENCFF244PNH.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF880NTF bed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF244PNH, ENCFF359FUJ, ENCFF756XID 548610 ENCODE Processing Pipeline ca168092a37a1c29188b592ca7a4bb73 https://www.encodeproject.org/files/ENCFF880NTF/@@download/ENCFF880NTF.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF271LUJ bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 1450209908 ENCODE Processing Pipeline 742c11fb6afa25b250dfd35bc7a9dab0 https://www.encodeproject.org/files/ENCFF271LUJ/@@download/ENCFF271LUJ.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF726DUS bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 1805947433 ENCODE Processing Pipeline 8c654836d1e1b26ca6575e832483c4e0 https://www.encodeproject.org/files/ENCFF726DUS/@@download/ENCFF726DUS.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF937HON bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 2478563944 ENCODE Processing Pipeline b015d6457c2d72ac4cd46f35e1886298 https://www.encodeproject.org/files/ENCFF937HON/@@download/ENCFF937HON.bigWig hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF359FUJ bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 7006203 ENCODE Processing Pipeline cce3be3f04bf615b9a5f510bee1382df https://www.encodeproject.org/files/ENCFF359FUJ/@@download/ENCFF359FUJ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF068UDY bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF244PNH 13609870 ENCODE Processing Pipeline eaa162191615afd60845b9f6cdd53cf7 https://www.encodeproject.org/files/ENCFF068UDY/@@download/ENCFF068UDY.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF807AKG bed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF244PNH, ENCFF359FUJ, ENCFF756XID 584709 ENCODE Processing Pipeline c254faee11bb0ce333fb9396a04593c5 https://www.encodeproject.org/files/ENCFF807AKG/@@download/ENCFF807AKG.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF987SEG bigBed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF807AKG 1196373 ENCODE Processing Pipeline b3e4ea51d18316522f7ef5802400c210 https://www.encodeproject.org/files/ENCFF987SEG/@@download/ENCFF987SEG.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF756XID bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 7199099 ENCODE Processing Pipeline acb889d6b515f1cb7393469e4ad92de5 https://www.encodeproject.org/files/ENCFF756XID/@@download/ENCFF756XID.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF709KLE bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF359FUJ 13402879 ENCODE Processing Pipeline 5568534dafadc140efdfc5bea2caf3a5 https://www.encodeproject.org/files/ENCFF709KLE/@@download/ENCFF709KLE.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF395YIX bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF756XID 13450668 ENCODE Processing Pipeline febdcf1948a04617d178c7e83808ceb7 https://www.encodeproject.org/files/ENCFF395YIX/@@download/ENCFF395YIX.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF596FOM bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 1474770328 ENCODE Processing Pipeline b2a2c1a43b298f3f1e707e6c962528a4 https://www.encodeproject.org/files/ENCFF596FOM/@@download/ENCFF596FOM.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF638AHR bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 1791433800 ENCODE Processing Pipeline d6574a545f1e939dae6e9ce53f512963 https://www.encodeproject.org/files/ENCFF638AHR/@@download/ENCFF638AHR.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF686WUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF880NTF 1137817 ENCODE Processing Pipeline 34b54f972b2ebc980171b24f44aa36e1 https://www.encodeproject.org/files/ENCFF686WUZ/@@download/ENCFF686WUZ.bigBed hg19 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF472PAT bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 1456177904 ENCODE Processing Pipeline 8b00ffc82bc08166e9a6c5d39879e450 https://www.encodeproject.org/files/ENCFF472PAT/@@download/ENCFF472PAT.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF660TSO bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 1506176881 ENCODE Processing Pipeline 3d32284482208b2598f926016158c685 https://www.encodeproject.org/files/ENCFF660TSO/@@download/ENCFF660TSO.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF142FCV bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 2383198142 ENCODE Processing Pipeline fbbf65ec2ab9b487082d03085883eea4 https://www.encodeproject.org/files/ENCFF142FCV/@@download/ENCFF142FCV.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF754BSN bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF072IYL 13578682 ENCODE Processing Pipeline 730349a14f364c69002d94d15f723e82 https://www.encodeproject.org/files/ENCFF754BSN/@@download/ENCFF754BSN.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF023ZOD bigBed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF948CPI 1252595 ENCODE Processing Pipeline fa62455136161f9903de5b5f6688a6f5 https://www.encodeproject.org/files/ENCFF023ZOD/@@download/ENCFF023ZOD.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF816RPC bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF093VDW 13477663 ENCODE Processing Pipeline 7039b4ec3293ddf4a303c121fcecf0e2 https://www.encodeproject.org/files/ENCFF816RPC/@@download/ENCFF816RPC.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF992JJW bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 2488859809 ENCODE Processing Pipeline c70c00a7ce345f35560d7ee74efb9739 https://www.encodeproject.org/files/ENCFF992JJW/@@download/ENCFF992JJW.bigWig GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF992MPI bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF003ZKO 13727500 ENCODE Processing Pipeline 7f11b09372703badf2f98c23d644d550 https://www.encodeproject.org/files/ENCFF992MPI/@@download/ENCFF992MPI.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF529ZQW bed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF003ZKO, ENCFF072IYL, ENCFF093VDW, ENCFF419RSJ 583004 ENCODE Processing Pipeline 306c0c1a6bedf24e508e3f6bd229dd62 https://www.encodeproject.org/files/ENCFF529ZQW/@@download/ENCFF529ZQW.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF948CPI bed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF003ZKO, ENCFF072IYL, ENCFF093VDW, ENCFF419RSJ 621012 ENCODE Processing Pipeline 4c3b138d189d14558311eafc7bdc5880 https://www.encodeproject.org/files/ENCFF948CPI/@@download/ENCFF948CPI.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF050AWG bigBed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF529ZQW 1191650 ENCODE Processing Pipeline 9df83e45bccef2f2f20cbf4135130303 https://www.encodeproject.org/files/ENCFF050AWG/@@download/ENCFF050AWG.bigBed GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF003ZKO bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 7055143 ENCODE Processing Pipeline 2f2e4df444bbdca4061ba4f1c520a893 https://www.encodeproject.org/files/ENCFF003ZKO/@@download/ENCFF003ZKO.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF093VDW bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 7063820 ENCODE Processing Pipeline f079f3b5e7fc0e5f64bdf32efb131bf1 https://www.encodeproject.org/files/ENCFF093VDW/@@download/ENCFF093VDW.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF072IYL bed narrowPeak peaks and background as input for IDR ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 7301694 ENCODE Processing Pipeline 18b8efb487caceca2b82cf6437577fb7 https://www.encodeproject.org/files/ENCFF072IYL/@@download/ENCFF072IYL.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking ENCFF900RHA fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 1 ENCFF993KAU 2231560793 Michael Snyder, Stanford 36b431deb58a3204f7e7b2614dc5d1d4 SRA:SRR6214362 https://www.encodeproject.org/files/ENCFF900RHA/@@download/ENCFF900RHA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF993KAU fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 2 ENCFF900RHA 2678085414 Michael Snyder, Stanford 886dce0c3c7fc67bded5e2b98a9d9a40 SRA:SRR6214362 https://www.encodeproject.org/files/ENCFF993KAU/@@download/ENCFF993KAU.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF294EUQ fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 1 ENCFF742VZZ 2228543605 Michael Snyder, Stanford 12da2b5a0ccea78ca868da36aaf12435 SRA:SRR6214361 https://www.encodeproject.org/files/ENCFF294EUQ/@@download/ENCFF294EUQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF742VZZ fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 2 ENCFF294EUQ 2432836497 Michael Snyder, Stanford 9d9c83f7401d44a5022dabe6bc106574 SRA:SRR6214361 https://www.encodeproject.org/files/ENCFF742VZZ/@@download/ENCFF742VZZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF947KGN bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF643CGH, ENCFF742VZZ 4257148640 ENCODE Processing Pipeline ecad80161e12a18acca6344ddf82b281 https://www.encodeproject.org/files/ENCFF947KGN/@@download/ENCFF947KGN.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF798SEF bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF643CGH, ENCFF900RHA, ENCFF993KAU 4408680690 ENCODE Processing Pipeline 1355612736314edee01b56175fd1009f https://www.encodeproject.org/files/ENCFF798SEF/@@download/ENCFF798SEF.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF576RFC bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF643CGH, ENCFF900RHA, ENCFF993KAU 2277576438 ENCODE Processing Pipeline 935d1de59d221c0158abc93053616fa9 https://www.encodeproject.org/files/ENCFF576RFC/@@download/ENCFF576RFC.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF079ZYM bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF643CGH, ENCFF742VZZ 2337123030 ENCODE Processing Pipeline 43db10206a46d5da5b6edda021d2daa1 https://www.encodeproject.org/files/ENCFF079ZYM/@@download/ENCFF079ZYM.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF003VDB bed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF419RSJ, ENCFF696PSB, ENCFF881LTJ, ENCFF901JIK 409426 ENCODE Processing Pipeline 7ad9ccf7ba008c33fa87406ca41e1d4d https://www.encodeproject.org/files/ENCFF003VDB/@@download/ENCFF003VDB.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF079RIG bigBed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF003VDB 798875 ENCODE Processing Pipeline 00ae6d4653317752b219e22c4f70217b https://www.encodeproject.org/files/ENCFF079RIG/@@download/ENCFF079RIG.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF905ETV bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 1095489072 ENCODE Processing Pipeline 3ddaa4eabaeed35ba47b4cd9ee8fba4a https://www.encodeproject.org/files/ENCFF905ETV/@@download/ENCFF905ETV.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF187VYR bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 1002805059 ENCODE Processing Pipeline 8100b45045fcc751085a18bae22294ab https://www.encodeproject.org/files/ENCFF187VYR/@@download/ENCFF187VYR.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF298EUK bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 1842570107 ENCODE Processing Pipeline 3c0f36c75750562ad5bd32d6b255890d https://www.encodeproject.org/files/ENCFF298EUK/@@download/ENCFF298EUK.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF680CVV bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 900415687 ENCODE Processing Pipeline b07517635c306fac3449b6dc7d25deff https://www.encodeproject.org/files/ENCFF680CVV/@@download/ENCFF680CVV.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF290IHY bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 896394757 ENCODE Processing Pipeline 56b0330d1a2bfa63e715d37fc5c1ab49 https://www.encodeproject.org/files/ENCFF290IHY/@@download/ENCFF290IHY.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF901JIK bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 5942820 ENCODE Processing Pipeline 27c6920ad3f964383a9d8c00653d8dff https://www.encodeproject.org/files/ENCFF901JIK/@@download/ENCFF901JIK.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF805NTL bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 1808365468 ENCODE Processing Pipeline d151829a923df650b9a4b27f3af22fc1 https://www.encodeproject.org/files/ENCFF805NTL/@@download/ENCFF805NTL.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF696PSB bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 5767055 ENCODE Processing Pipeline 0d42b60ff8e65ae9439682dadf0464d5 https://www.encodeproject.org/files/ENCFF696PSB/@@download/ENCFF696PSB.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF881LTJ bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 6915657 ENCODE Processing Pipeline 045f2658167e5b84fc429d73eb2ebb22 https://www.encodeproject.org/files/ENCFF881LTJ/@@download/ENCFF881LTJ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF384LQG bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF901JIK 11431823 ENCODE Processing Pipeline d023c2eb7df2f2f6e145466455c78449 https://www.encodeproject.org/files/ENCFF384LQG/@@download/ENCFF384LQG.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF338OSR bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF696PSB 11363217 ENCODE Processing Pipeline 69fc3b8a6ec218c71af2cc4a41be1b92 https://www.encodeproject.org/files/ENCFF338OSR/@@download/ENCFF338OSR.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF361KIS bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF881LTJ 13486067 ENCODE Processing Pipeline 521c0f802c6eaa11775b26cd87b43a7b https://www.encodeproject.org/files/ENCFF361KIS/@@download/ENCFF361KIS.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF829MGY bed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF419RSJ, ENCFF696PSB, ENCFF881LTJ, ENCFF901JIK 277266 ENCODE Processing Pipeline f88c95824b59747b440729cdeedc0ea8 https://www.encodeproject.org/files/ENCFF829MGY/@@download/ENCFF829MGY.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF465KVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF829MGY 610192 ENCODE Processing Pipeline a00ee5e3346532b31b418bc9b55cff40 https://www.encodeproject.org/files/ENCFF465KVZ/@@download/ENCFF465KVZ.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF273SPJ bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF742VZZ, ENCFF807MUK 4260326517 ENCODE Processing Pipeline 8103876bc6ba84e9907887c03d3e8269 https://www.encodeproject.org/files/ENCFF273SPJ/@@download/ENCFF273SPJ.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF519PTB bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF807MUK, ENCFF900RHA, ENCFF993KAU 4421404046 ENCODE Processing Pipeline f4b0d18b036cf65ee9a9c9a1f4fdfbff https://www.encodeproject.org/files/ENCFF519PTB/@@download/ENCFF519PTB.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF717MOF bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF742VZZ, ENCFF807MUK 2332804641 ENCODE Processing Pipeline 91c6f1fa5f254480fd1009feea635e9b https://www.encodeproject.org/files/ENCFF717MOF/@@download/ENCFF717MOF.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF655HZW bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF807MUK, ENCFF900RHA, ENCFF993KAU 2260662340 ENCODE Processing Pipeline b15c6064f68dee55a4a9bc9091f772ef https://www.encodeproject.org/files/ENCFF655HZW/@@download/ENCFF655HZW.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF559GLG bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 960955888 ENCODE Processing Pipeline 5534f8b889cd9eb0580c8a8a4efe5a17 https://www.encodeproject.org/files/ENCFF559GLG/@@download/ENCFF559GLG.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF459SOY bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF716JVW 11405731 ENCODE Processing Pipeline fb1d9ecb454379d14bba726206a89e60 https://www.encodeproject.org/files/ENCFF459SOY/@@download/ENCFF459SOY.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF027VZK bed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF644NTF, ENCFF716JVW, ENCFF877OQG 407625 ENCODE Processing Pipeline 145ef2f15c8164240d4f149dfa7e5c62 https://www.encodeproject.org/files/ENCFF027VZK/@@download/ENCFF027VZK.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF182ATX bigBed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF027VZK 835401 ENCODE Processing Pipeline 562d2e2c0451574b3021543b05316c22 https://www.encodeproject.org/files/ENCFF182ATX/@@download/ENCFF182ATX.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF784PLL bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 890256079 ENCODE Processing Pipeline 0297f561894856f9f0c07de14adc47a9 https://www.encodeproject.org/files/ENCFF784PLL/@@download/ENCFF784PLL.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF716JVW bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 5917790 ENCODE Processing Pipeline 160fbbbf59f0763ce2ad00f911f5ad13 https://www.encodeproject.org/files/ENCFF716JVW/@@download/ENCFF716JVW.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF669SIE bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 1021255518 ENCODE Processing Pipeline 3cb6849893c3974b75a01302ba593ec1 https://www.encodeproject.org/files/ENCFF669SIE/@@download/ENCFF669SIE.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF689NYX bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 1818985977 ENCODE Processing Pipeline f8d1816bb8fd3c5b9e5a0e7439769f57 https://www.encodeproject.org/files/ENCFF689NYX/@@download/ENCFF689NYX.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF645LFW bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 913416163 ENCODE Processing Pipeline d0e380be6349633dae428ec71dccc5e9 https://www.encodeproject.org/files/ENCFF645LFW/@@download/ENCFF645LFW.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF006RQH bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 1808045821 ENCODE Processing Pipeline 6ceb914f81e3468038fca6cbd9f9d495 https://www.encodeproject.org/files/ENCFF006RQH/@@download/ENCFF006RQH.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF877OQG bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 5788573 ENCODE Processing Pipeline d1007e8e878738b67d715a15fcad9690 https://www.encodeproject.org/files/ENCFF877OQG/@@download/ENCFF877OQG.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF644NTF bed narrowPeak peaks and background as input for IDR ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 6910089 ENCODE Processing Pipeline db5baa0caf2d677b03780ec0f3558c3f https://www.encodeproject.org/files/ENCFF644NTF/@@download/ENCFF644NTF.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF904HTY bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF877OQG 11418953 ENCODE Processing Pipeline dad32daddf9e489c20b5874abe981d1b https://www.encodeproject.org/files/ENCFF904HTY/@@download/ENCFF904HTY.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF819LND bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF644NTF 13527443 ENCODE Processing Pipeline d8cfd20086c049da8c0a56bec255457d https://www.encodeproject.org/files/ENCFF819LND/@@download/ENCFF819LND.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF415CYX bed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF644NTF, ENCFF716JVW, ENCFF877OQG 272162 ENCODE Processing Pipeline 3414b404a6f8369cf204990eb0f9316a https://www.encodeproject.org/files/ENCFF415CYX/@@download/ENCFF415CYX.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF791GSE bigBed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF415CYX 506435 ENCODE Processing Pipeline 2f5269da071ecc698344cccbd64d6815 https://www.encodeproject.org/files/ENCFF791GSE/@@download/ENCFF791GSE.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF864GSN fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF773RRJ 2781366484 Michael Snyder, Stanford 259a451d30e38a97c23e7b79cd3499b7 SRA:SRR6212899 https://www.encodeproject.org/files/ENCFF864GSN/@@download/ENCFF864GSN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF773RRJ fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF864GSN 2772617320 Michael Snyder, Stanford d4979d1444e688bff8f8221561270a43 SRA:SRR6212899 https://www.encodeproject.org/files/ENCFF773RRJ/@@download/ENCFF773RRJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF011RRD fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF460XZT 3056793893 Michael Snyder, Stanford f71fa6f2c1f2880bc909abf48b581c56 SRA:SRR6212900 https://www.encodeproject.org/files/ENCFF011RRD/@@download/ENCFF011RRD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF460XZT fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF011RRD 3574694736 Michael Snyder, Stanford ac445915f8db72fc0cab665ae70da84f SRA:SRR6212900 https://www.encodeproject.org/files/ENCFF460XZT/@@download/ENCFF460XZT.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF122LWT bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF773RRJ, ENCFF864GSN 3546990955 ENCODE Processing Pipeline b19876d1a94f87c1b135aaa7a1f0c364 https://www.encodeproject.org/files/ENCFF122LWT/@@download/ENCFF122LWT.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF882APL bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF773RRJ, ENCFF807MUK, ENCFF864GSN 5045442212 ENCODE Processing Pipeline fe0f07fa985b47275ba0bd81ab01ba3e https://www.encodeproject.org/files/ENCFF882APL/@@download/ENCFF882APL.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF719YXO bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF773RRJ, ENCFF864GSN 5048119556 ENCODE Processing Pipeline 49be79821467638ca104ceb4a33b7399 https://www.encodeproject.org/files/ENCFF719YXO/@@download/ENCFF719YXO.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF873ZZW bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF773RRJ, ENCFF807MUK, ENCFF864GSN 3541761227 ENCODE Processing Pipeline fdac7ebfb64e81ba4ddecd4c0910e9eb https://www.encodeproject.org/files/ENCFF873ZZW/@@download/ENCFF873ZZW.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF778UYM bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF807MUK 5766928400 ENCODE Processing Pipeline 4902ab0b803de21a326a7ab0d9e92ecf https://www.encodeproject.org/files/ENCFF778UYM/@@download/ENCFF778UYM.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF329ZGR bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF807MUK 3722604626 ENCODE Processing Pipeline 8434a97497a09ae8f98cb8dcb1abd250 https://www.encodeproject.org/files/ENCFF329ZGR/@@download/ENCFF329ZGR.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF676MWP bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF643CGH 3727814272 ENCODE Processing Pipeline e8159593ed072e2813f33b5c7b8ef0f9 https://www.encodeproject.org/files/ENCFF676MWP/@@download/ENCFF676MWP.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF754PAD bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF643CGH 5768407714 ENCODE Processing Pipeline 1b7c08fbbb22b2fd91683d1a4a3bcf59 https://www.encodeproject.org/files/ENCFF754PAD/@@download/ENCFF754PAD.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF636MWX bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 2249992810 ENCODE Processing Pipeline bf80fe5e05d321c746a89c3bbaeecc1d https://www.encodeproject.org/files/ENCFF636MWX/@@download/ENCFF636MWX.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF569JWR bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 5807064 ENCODE Processing Pipeline 4dfaccae07a979933d1964cf64e81ddb https://www.encodeproject.org/files/ENCFF569JWR/@@download/ENCFF569JWR.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF886RMX bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 5978243 ENCODE Processing Pipeline 09ae9d17e078b91aaf356d04a97ab953 https://www.encodeproject.org/files/ENCFF886RMX/@@download/ENCFF886RMX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF770KQZ bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 6988632 ENCODE Processing Pipeline 89a2301c8a19ca6679e5bf761f5450f1 https://www.encodeproject.org/files/ENCFF770KQZ/@@download/ENCFF770KQZ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF420SFO bigBed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF863OPI 283242 ENCODE Processing Pipeline 79a0c9e934014be391db3d8014f17f9f https://www.encodeproject.org/files/ENCFF420SFO/@@download/ENCFF420SFO.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF470OOD bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 1150711287 ENCODE Processing Pipeline 542789454dc6f35163163a1db5ecab82 https://www.encodeproject.org/files/ENCFF470OOD/@@download/ENCFF470OOD.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF676FZV bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 1070728878 ENCODE Processing Pipeline e1cd160550e3e286ee88b2159616651e https://www.encodeproject.org/files/ENCFF676FZV/@@download/ENCFF676FZV.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF615APZ bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 2123331886 ENCODE Processing Pipeline 3598566161798dd760b38f308de8974d https://www.encodeproject.org/files/ENCFF615APZ/@@download/ENCFF615APZ.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF168BVC bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 1934547703 ENCODE Processing Pipeline 7e9c8bf9210270a6ffe645cb4b0c9003 https://www.encodeproject.org/files/ENCFF168BVC/@@download/ENCFF168BVC.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF567SBD bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF569JWR 11522824 ENCODE Processing Pipeline 9129bdd61b74f930d923da1a5f97595e https://www.encodeproject.org/files/ENCFF567SBD/@@download/ENCFF567SBD.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF553QWX bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF430AOM 11559868 ENCODE Processing Pipeline 5336f55135efc8e786819c8db0b9d9af https://www.encodeproject.org/files/ENCFF553QWX/@@download/ENCFF553QWX.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF233OLS bed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF569JWR, ENCFF629PYS, ENCFF886RMX 120481 ENCODE Processing Pipeline 3b7f0f9961a2604fa160d0edf0e01a86 https://www.encodeproject.org/files/ENCFF233OLS/@@download/ENCFF233OLS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF818LJR bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 1249720375 ENCODE Processing Pipeline d39e864752c912d0fc29c23347f3530f https://www.encodeproject.org/files/ENCFF818LJR/@@download/ENCFF818LJR.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF456QVX bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 1247153680 ENCODE Processing Pipeline 2c6d764234b525e151ec7cb9ece74fe1 https://www.encodeproject.org/files/ENCFF456QVX/@@download/ENCFF456QVX.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF319YAI bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 2235343901 ENCODE Processing Pipeline f1d46b6b3c4058130c689bb5b7e05d87 https://www.encodeproject.org/files/ENCFF319YAI/@@download/ENCFF319YAI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF430AOM bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 5983578 ENCODE Processing Pipeline 68926d19bd4f361c1f8491b18a3e3817 https://www.encodeproject.org/files/ENCFF430AOM/@@download/ENCFF430AOM.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF370PVX bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF886RMX 11540222 ENCODE Processing Pipeline 3b7b4a5a57c06b3bb2960133d47c1ddb https://www.encodeproject.org/files/ENCFF370PVX/@@download/ENCFF370PVX.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF863OPI bed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF039FKV, ENCFF419RSJ, ENCFF430AOM, ENCFF770KQZ 122885 ENCODE Processing Pipeline 4c562c3de72deb0622c6882880183b59 https://www.encodeproject.org/files/ENCFF863OPI/@@download/ENCFF863OPI.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF114MRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF566YUW 436457 ENCODE Processing Pipeline 0759a98757fb9995cb60445012d32557 https://www.encodeproject.org/files/ENCFF114MRQ/@@download/ENCFF114MRQ.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF652ZCF bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 1195243787 ENCODE Processing Pipeline 99b879f0cba1884b210c941a1bb8e745 https://www.encodeproject.org/files/ENCFF652ZCF/@@download/ENCFF652ZCF.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF868RCI bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 1140575174 ENCODE Processing Pipeline 9d15a587a6d9f27205c494c93c610f27 https://www.encodeproject.org/files/ENCFF868RCI/@@download/ENCFF868RCI.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF175MNG bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF039FKV 11538504 ENCODE Processing Pipeline 55e9c8a039dac071205a9a3ff88d9836 https://www.encodeproject.org/files/ENCFF175MNG/@@download/ENCFF175MNG.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF613GQT bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF770KQZ 11504441 ENCODE Processing Pipeline a5ce29aced032b65f70fbe3c8cfc8714 https://www.encodeproject.org/files/ENCFF613GQT/@@download/ENCFF613GQT.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF726EJL bigBed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF233OLS 277734 ENCODE Processing Pipeline 348bd0a940e56877f13da04a7b5e1d8a https://www.encodeproject.org/files/ENCFF726EJL/@@download/ENCFF726EJL.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF566YUW bed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF569JWR, ENCFF629PYS, ENCFF886RMX 226453 ENCODE Processing Pipeline e42b637c8a6e8fa11ce0322f1525c6d4 https://www.encodeproject.org/files/ENCFF566YUW/@@download/ENCFF566YUW.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF029HDH bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 1153529200 ENCODE Processing Pipeline 12dc27d0212500d5a3d6840532ab9ffe https://www.encodeproject.org/files/ENCFF029HDH/@@download/ENCFF029HDH.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF700SLE bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 1198266921 ENCODE Processing Pipeline ce9c9c0c5796b6586c3d5ea956744060 https://www.encodeproject.org/files/ENCFF700SLE/@@download/ENCFF700SLE.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF039FKV bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 5808258 ENCODE Processing Pipeline 51e48cbc67118a58817faef14b78219c https://www.encodeproject.org/files/ENCFF039FKV/@@download/ENCFF039FKV.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF629PYS bed narrowPeak peaks and background as input for IDR ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 6983367 ENCODE Processing Pipeline f8889da2a509ed8ecc31f7526f48d868 https://www.encodeproject.org/files/ENCFF629PYS/@@download/ENCFF629PYS.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF141EKA bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF629PYS 11484808 ENCODE Processing Pipeline bf7f2651e576684e9a79c8d84437bde5 https://www.encodeproject.org/files/ENCFF141EKA/@@download/ENCFF141EKA.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF615DTQ bed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF039FKV, ENCFF419RSJ, ENCFF430AOM, ENCFF770KQZ 225122 ENCODE Processing Pipeline fed3cb852f3dddf50fc7256d43e41dd5 https://www.encodeproject.org/files/ENCFF615DTQ/@@download/ENCFF615DTQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF418PIY bigBed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF615DTQ 518535 ENCODE Processing Pipeline 4f67e0c71e4711c5d8e5ea37cd99460a https://www.encodeproject.org/files/ENCFF418PIY/@@download/ENCFF418PIY.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF452DGQ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF271IUJ 2635818350 Michael Snyder, Stanford 714fdf6063356e3be5c7c8a1d495ab32 SRA:SRR6214305 https://www.encodeproject.org/files/ENCFF452DGQ/@@download/ENCFF452DGQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, mild to moderate bottlenecking ENCFF271IUJ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF452DGQ 3062951401 Michael Snyder, Stanford 87487dcfb90c5ba77b8e76b7b80a7624 SRA:SRR6214305 https://www.encodeproject.org/files/ENCFF271IUJ/@@download/ENCFF271IUJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, mild to moderate bottlenecking ENCFF814CFQ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF253VDT 2685563272 Michael Snyder, Stanford 4d3b2ecf9026e258225d882b5627e6f9 SRA:SRR6214304 https://www.encodeproject.org/files/ENCFF814CFQ/@@download/ENCFF814CFQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, mild to moderate bottlenecking ENCFF253VDT fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF814CFQ 3182067184 Michael Snyder, Stanford fb68ffbefd48206948d194296e619a42 SRA:SRR6214304 https://www.encodeproject.org/files/ENCFF253VDT/@@download/ENCFF253VDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, mild to moderate bottlenecking ENCFF100LIK bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF807MUK 3998707587 ENCODE Processing Pipeline 20128d57c801ef21b630afb9a1a4f8c1 https://www.encodeproject.org/files/ENCFF100LIK/@@download/ENCFF100LIK.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF490DDO bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF807MUK 5265190452 ENCODE Processing Pipeline 48b7976f836e57615a54feab90ea0aa1 https://www.encodeproject.org/files/ENCFF490DDO/@@download/ENCFF490DDO.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF197RPF bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF643CGH 5269608959 ENCODE Processing Pipeline 950534c9d3a5e984120ee1828013d7fa https://www.encodeproject.org/files/ENCFF197RPF/@@download/ENCFF197RPF.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF257XYL bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF643CGH 4004369718 ENCODE Processing Pipeline 045dfc2339d8cbc67bcac6fef6837fd1 https://www.encodeproject.org/files/ENCFF257XYL/@@download/ENCFF257XYL.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF577XDA bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF807MUK, ENCFF814CFQ 4409684313 ENCODE Processing Pipeline d756aebefbdab2a2aaba7823dcfffaed https://www.encodeproject.org/files/ENCFF577XDA/@@download/ENCFF577XDA.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF808DKU bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF807MUK, ENCFF814CFQ 5533837255 ENCODE Processing Pipeline 1c684f12bca87e48b55e7ae1fc6564d6 https://www.encodeproject.org/files/ENCFF808DKU/@@download/ENCFF808DKU.bam hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF529JDU bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF643CGH, ENCFF814CFQ 4415833210 ENCODE Processing Pipeline a959bea9ac9f0b8030d1f45b147fdff5 https://www.encodeproject.org/files/ENCFF529JDU/@@download/ENCFF529JDU.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF078RWZ bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF643CGH, ENCFF814CFQ 5539926557 ENCODE Processing Pipeline 513e9655c60c853db1aed960b1c9755e https://www.encodeproject.org/files/ENCFF078RWZ/@@download/ENCFF078RWZ.bam GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF489DHO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 1835382661 ENCODE Processing Pipeline 54cba2e30fc1920154ef829818985877 https://www.encodeproject.org/files/ENCFF489DHO/@@download/ENCFF489DHO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF274VOO bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 2349268913 ENCODE Processing Pipeline c728c3456fb6f97188bc8a426137f741 https://www.encodeproject.org/files/ENCFF274VOO/@@download/ENCFF274VOO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF449XRE bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF348CSG 13370283 ENCODE Processing Pipeline a648cb47e72afafb0ad645c62dce2b3f https://www.encodeproject.org/files/ENCFF449XRE/@@download/ENCFF449XRE.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF082CZO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 2382085231 ENCODE Processing Pipeline 7acd9b6874ea348825c009280304bd52 https://www.encodeproject.org/files/ENCFF082CZO/@@download/ENCFF082CZO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF225XZT bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF665KNY 13621584 ENCODE Processing Pipeline 0daac7cedae5b616335a8d07f19dd39c https://www.encodeproject.org/files/ENCFF225XZT/@@download/ENCFF225XZT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF440AVO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 1297095415 ENCODE Processing Pipeline 1bf3218fee213043abeeb64ae3950877 https://www.encodeproject.org/files/ENCFF440AVO/@@download/ENCFF440AVO.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF665KNY bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 6736864 ENCODE Processing Pipeline 2e36cff01444f7ba282020bc8e7b0328 https://www.encodeproject.org/files/ENCFF665KNY/@@download/ENCFF665KNY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF680WTT bigBed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF263YTU 1179217 ENCODE Processing Pipeline 44aec27dca7b4129f47373331ffc8576 https://www.encodeproject.org/files/ENCFF680WTT/@@download/ENCFF680WTT.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF601DQY bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 1626238129 ENCODE Processing Pipeline 99e96ce282aeb034a5cf9e705eca9eba https://www.encodeproject.org/files/ENCFF601DQY/@@download/ENCFF601DQY.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF148WOH bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 1197044766 ENCODE Processing Pipeline d7269814ab77dc3d25632414098b5272 https://www.encodeproject.org/files/ENCFF148WOH/@@download/ENCFF148WOH.bigWig hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF348CSG bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 6747071 ENCODE Processing Pipeline d4dc54ad489f3d6b04ffc30b0091448b https://www.encodeproject.org/files/ENCFF348CSG/@@download/ENCFF348CSG.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF263YTU bed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF052WWT, ENCFF348CSG, ENCFF665KNY 536877 ENCODE Processing Pipeline dea82036dc36c33a6345ede5b37798d8 https://www.encodeproject.org/files/ENCFF263YTU/@@download/ENCFF263YTU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF643OWO bed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF052WWT, ENCFF348CSG, ENCFF665KNY 594294 ENCODE Processing Pipeline e97fb90edf8b142381499be4561ffb6e https://www.encodeproject.org/files/ENCFF643OWO/@@download/ENCFF643OWO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF052WWT bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 7265183 ENCODE Processing Pipeline cdba967fd3327d6729dd575f5c55ac66 https://www.encodeproject.org/files/ENCFF052WWT/@@download/ENCFF052WWT.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF672PIC bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF052WWT 13346252 ENCODE Processing Pipeline 1773803829b5c09f097e110ea2ad632b https://www.encodeproject.org/files/ENCFF672PIC/@@download/ENCFF672PIC.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF134ARM bigBed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF643OWO 1290451 ENCODE Processing Pipeline bf7785a1f1b7c6b266302f3a740f2666 https://www.encodeproject.org/files/ENCFF134ARM/@@download/ENCFF134ARM.bigBed hg19 released moderate library complexity, mild to moderate bottlenecking ENCFF038IYA bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 2393549364 ENCODE Processing Pipeline 65b2cc5ece1a6b28d851527e3e1691a5 https://www.encodeproject.org/files/ENCFF038IYA/@@download/ENCFF038IYA.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF687TYV bigBed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF137BRA 1300872 ENCODE Processing Pipeline cc3f7e4554b00544ed38e1d7ff11f321 https://www.encodeproject.org/files/ENCFF687TYV/@@download/ENCFF687TYV.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF263GUB bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 1203382731 ENCODE Processing Pipeline 2245ccab3fc04ecc6cf76198ee5358b2 https://www.encodeproject.org/files/ENCFF263GUB/@@download/ENCFF263GUB.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF670COI bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 1296617818 ENCODE Processing Pipeline 24001573db6559b49c72e03d02ac6011 https://www.encodeproject.org/files/ENCFF670COI/@@download/ENCFF670COI.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF244SNW bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 6762225 ENCODE Processing Pipeline 5d6a1b7c15a6e992d06716c1db4f1d03 https://www.encodeproject.org/files/ENCFF244SNW/@@download/ENCFF244SNW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF918YEX bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 7272412 ENCODE Processing Pipeline 03f0765ee98a8ea66d25854ebe236bd3 https://www.encodeproject.org/files/ENCFF918YEX/@@download/ENCFF918YEX.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF821UWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF012XLD 1184607 ENCODE Processing Pipeline bb1abe585b5770267df688e9b3649ae0 https://www.encodeproject.org/files/ENCFF821UWJ/@@download/ENCFF821UWJ.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF713IYR bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 1666585770 ENCODE Processing Pipeline ad945c83d3d4f381ac260e2e383aa158 https://www.encodeproject.org/files/ENCFF713IYR/@@download/ENCFF713IYR.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF910XBC bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF244SNW 13398222 ENCODE Processing Pipeline 1d1b64dd8986d3b15824503d3daf94ab https://www.encodeproject.org/files/ENCFF910XBC/@@download/ENCFF910XBC.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF824PGV bed narrowPeak peaks and background as input for IDR ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 6753098 ENCODE Processing Pipeline 300c939d9504ec92af4d9caa3bdeb182 https://www.encodeproject.org/files/ENCFF824PGV/@@download/ENCFF824PGV.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF339UEH bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF918YEX 13363621 ENCODE Processing Pipeline 4156c548b55a029518f91a0075d81b57 https://www.encodeproject.org/files/ENCFF339UEH/@@download/ENCFF339UEH.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF012XLD bed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF244SNW, ENCFF419RSJ, ENCFF824PGV, ENCFF918YEX 538473 ENCODE Processing Pipeline 88f78cf6c4bc2c5bb4ed5b3b42aaa275 https://www.encodeproject.org/files/ENCFF012XLD/@@download/ENCFF012XLD.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF137BRA bed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF244SNW, ENCFF419RSJ, ENCFF824PGV, ENCFF918YEX 599600 ENCODE Processing Pipeline 035e3c404cbbbc182705503da480fd85 https://www.encodeproject.org/files/ENCFF137BRA/@@download/ENCFF137BRA.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF743QVO bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 2010230584 ENCODE Processing Pipeline a5def7667deb0c82a5c20742141be57d https://www.encodeproject.org/files/ENCFF743QVO/@@download/ENCFF743QVO.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF552TIM bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 1819470469 ENCODE Processing Pipeline 305bb6ecce607ad37845abfded0f4f87 https://www.encodeproject.org/files/ENCFF552TIM/@@download/ENCFF552TIM.bigWig GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF118MVL bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF824PGV 13617880 ENCODE Processing Pipeline 52af313e93093a74dde8b823f04d22cd https://www.encodeproject.org/files/ENCFF118MVL/@@download/ENCFF118MVL.bigBed GRCh38 released moderate library complexity, mild to moderate bottlenecking ENCFF000RPA bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RPI 653932815 Vishwanath Iyer, UTA 5aca492cee5a348430c7d65f0bec5adc https://www.encodeproject.org/files/ENCFF000RPA/@@download/ENCFF000RPA.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPC bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RPL 720532651 Vishwanath Iyer, UTA ee515d05481406ce25952295920c986d https://www.encodeproject.org/files/ENCFF000RPC/@@download/ENCFF000RPC.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPD bigWig base overlap signal ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 186937093 Vishwanath Iyer, UTA 759f21263591ed1916db81b7d426ddde https://www.encodeproject.org/files/ENCFF000RPD/@@download/ENCFF000RPD.bigWig hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPE bigBed narrowPeak peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USI 3627971 Vishwanath Iyer, UTA a8bbdbefa3ab312c69f8528c39677561 https://www.encodeproject.org/files/ENCFF000RPE/@@download/ENCFF000RPE.bigBed hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPF bigWig signal ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2170631907 Vishwanath Iyer, UTA 216df87085ad3667fe9963c01f4a0756 https://www.encodeproject.org/files/ENCFF000RPF/@@download/ENCFF000RPF.bigWig hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPG tar validation ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 50438662 Vishwanath Iyer, UTA 2be0fbf348e706ba4862cc72c5df2a13 https://www.encodeproject.org/files/ENCFF000RPG/@@download/ENCFF000RPG.tar.gz hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPI fastq reads ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 33 single-ended 767098314 Vishwanath Iyer, UTA 284e70e9916c0b35a8340784d8e08238 https://www.encodeproject.org/files/ENCFF000RPI/@@download/ENCFF000RPI.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF000RPL fastq reads ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 668605348 Vishwanath Iyer, UTA 7dc1d7dbf009327e1344261758218e3e https://www.encodeproject.org/files/ENCFF000RPL/@@download/ENCFF000RPL.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, inconsistent control read length biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF001USI bed narrowPeak peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2103751 Vishwanath Iyer, UTA 15373f463f3d6821047e8a4167a978c1 https://www.encodeproject.org/files/ENCFF001USI/@@download/ENCFF001USI.bed.gz hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF002DAK bed narrowPeak optimal idr thresholded peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 330987 ENCODE Consortium Analysis Working Group 92626e5c67bb02c63d3fa5cdfdfe2715 https://www.encodeproject.org/files/ENCFF002DAK/@@download/ENCFF002DAK.bed.gz hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF071AIX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAK 895820 ENCODE Consortium 1442e680753a0b159c479c9bac9b94e3 https://www.encodeproject.org/files/ENCFF071AIX/@@download/ENCFF071AIX.bigBed hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF960TLC bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF643CGH 938918999 ENCODE Processing Pipeline ec11358963012d083d8b5c2b1f08c896 https://www.encodeproject.org/files/ENCFF960TLC/@@download/ENCFF960TLC.bam GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF673EZL bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF807MUK 887582478 ENCODE Processing Pipeline 5f1bdf1d72985666a137a1cbca55a6ae https://www.encodeproject.org/files/ENCFF673EZL/@@download/ENCFF673EZL.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF769YCE bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF807MUK 934321357 ENCODE Processing Pipeline cee9b5464e57b77fa3ef136dcc7b9629 https://www.encodeproject.org/files/ENCFF769YCE/@@download/ENCFF769YCE.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF463PMP bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF643CGH 889070687 ENCODE Processing Pipeline af73fe9170270de317d00d07fec2370c https://www.encodeproject.org/files/ENCFF463PMP/@@download/ENCFF463PMP.bam GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF430LDQ bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF643CGH 586587302 ENCODE Processing Pipeline b559a090185dd2dc186a2b17b75be89d https://www.encodeproject.org/files/ENCFF430LDQ/@@download/ENCFF430LDQ.bam GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF409FBN bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF807MUK 299220233 ENCODE Processing Pipeline aeaa487ce800dcae03e49b44b51189df https://www.encodeproject.org/files/ENCFF409FBN/@@download/ENCFF409FBN.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF173NYU bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF643CGH 299221163 ENCODE Processing Pipeline 345d025ba60e078b33128019623a6cff https://www.encodeproject.org/files/ENCFF173NYU/@@download/ENCFF173NYU.bam GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF004NVG bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF807MUK 585962741 ENCODE Processing Pipeline f29a64e4afe80e2e71369df5585239c3 https://www.encodeproject.org/files/ENCFF004NVG/@@download/ENCFF004NVG.bam hg19 released mild to moderate bottlenecking, low read length, mixed read lengths, low read depth, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking, insufficient read length, insufficient read depth ENCFF002DHL fastq reads ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 1 50 single-ended 996686942 Richard Myers, HAIB b2827a2f527f45758ba7a62863ff1691 SRA:SRR5338555 https://www.encodeproject.org/files/ENCFF002DHL/@@download/ENCFF002DHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF002DHM fastq reads ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 1 50 single-ended 1635001607 Richard Myers, HAIB c756440820d77f095bb4d3d2883f0dcd SRA:SRR5338556 https://www.encodeproject.org/files/ENCFF002DHM/@@download/ENCFF002DHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF430LJF bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF643CGH 1013519629 ENCODE Processing Pipeline fbd79848814cd9dcebc27fec1eed216f https://www.encodeproject.org/files/ENCFF430LJF/@@download/ENCFF430LJF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF084LVF bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF807MUK 1013326044 ENCODE Processing Pipeline f8dd888b02a5cc4c19964761ea7e6c50 https://www.encodeproject.org/files/ENCFF084LVF/@@download/ENCFF084LVF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF742KAV bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF807MUK 1719737259 ENCODE Processing Pipeline 084f3ac8421c4021957b56c42bf77a89 https://www.encodeproject.org/files/ENCFF742KAV/@@download/ENCFF742KAV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF988HVR bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF643CGH 654294690 ENCODE Processing Pipeline 6ca05126bfff39ed58a87f863096f6fd https://www.encodeproject.org/files/ENCFF988HVR/@@download/ENCFF988HVR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF806SMA bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF643CGH 1723926167 ENCODE Processing Pipeline 7f5049f4570de9eace339433734522a4 https://www.encodeproject.org/files/ENCFF806SMA/@@download/ENCFF806SMA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF249FIH bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF807MUK 647656900 ENCODE Processing Pipeline e08861b7b0201ccaea0152ccd609d4fa https://www.encodeproject.org/files/ENCFF249FIH/@@download/ENCFF249FIH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF178WGW bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF643CGH 1117340209 ENCODE Processing Pipeline bfad364c812c67af39af421d4ca9e17a https://www.encodeproject.org/files/ENCFF178WGW/@@download/ENCFF178WGW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF019XCK bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF807MUK 1113793425 ENCODE Processing Pipeline 073e9d0bb61f9448824841d3a048f55e https://www.encodeproject.org/files/ENCFF019XCK/@@download/ENCFF019XCK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF613ANK bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 578637151 ENCODE Processing Pipeline 2b1bcd1bf2e894176582dd6ae64b8fe9 https://www.encodeproject.org/files/ENCFF613ANK/@@download/ENCFF613ANK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF749IZH bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 359849070 ENCODE Processing Pipeline b444a8de26e9c475166093f8d1f3a0a3 https://www.encodeproject.org/files/ENCFF749IZH/@@download/ENCFF749IZH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF887YID bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 637667768 ENCODE Processing Pipeline 1f8456b0f12ed634e06916284be6a813 https://www.encodeproject.org/files/ENCFF887YID/@@download/ENCFF887YID.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF185DQG bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 557844114 ENCODE Processing Pipeline bf745c556d018e1059ce2719381b4c58 https://www.encodeproject.org/files/ENCFF185DQG/@@download/ENCFF185DQG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF043TMW bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 766601696 ENCODE Processing Pipeline f7451440f46dff9ee35b189f5efec266 https://www.encodeproject.org/files/ENCFF043TMW/@@download/ENCFF043TMW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF636JXY bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 4461664 ENCODE Processing Pipeline 0c3f577bd1e330c847c578dcd8a09790 https://www.encodeproject.org/files/ENCFF636JXY/@@download/ENCFF636JXY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF116EXQ bed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF304VXR, ENCFF379IZI, ENCFF636JXY 145088 ENCODE Processing Pipeline 54561d7676f209c4accf47a9d8d8dbda https://www.encodeproject.org/files/ENCFF116EXQ/@@download/ENCFF116EXQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF304VXR bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 5449410 ENCODE Processing Pipeline 7960ea0f8df0aa0ce24f114984592100 https://www.encodeproject.org/files/ENCFF304VXR/@@download/ENCFF304VXR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF747TKJ bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF636JXY 9893491 ENCODE Processing Pipeline 48cfb9c7a1a6cf0797dede1e2d7fd87f https://www.encodeproject.org/files/ENCFF747TKJ/@@download/ENCFF747TKJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF340PXK bigBed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF627POZ 305709 ENCODE Processing Pipeline d3b087c771a667222fcd1f520d5019ce https://www.encodeproject.org/files/ENCFF340PXK/@@download/ENCFF340PXK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF379IZI bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 5601405 ENCODE Processing Pipeline 18fad9dd859591145cdd2b05a1860678 https://www.encodeproject.org/files/ENCFF379IZI/@@download/ENCFF379IZI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF079HBN bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF304VXR 13155544 ENCODE Processing Pipeline 3eafb3122e130c41637ae81544808cc4 https://www.encodeproject.org/files/ENCFF079HBN/@@download/ENCFF079HBN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF529FLT bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 748362824 ENCODE Processing Pipeline deca37d31e865daa91c298bd3873eab5 https://www.encodeproject.org/files/ENCFF529FLT/@@download/ENCFF529FLT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF205MMG bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF379IZI 11174800 ENCODE Processing Pipeline baeb70d0cc5ed198efaaa26459721d33 https://www.encodeproject.org/files/ENCFF205MMG/@@download/ENCFF205MMG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF627POZ bed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF304VXR, ENCFF379IZI, ENCFF636JXY 120904 ENCODE Processing Pipeline d9d4159d773eb0c2485be4b130402021 https://www.encodeproject.org/files/ENCFF627POZ/@@download/ENCFF627POZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF849NUO bigBed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF116EXQ 346314 ENCODE Processing Pipeline e23920d136591b1243a947ffd355217d https://www.encodeproject.org/files/ENCFF849NUO/@@download/ENCFF849NUO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF840PEJ bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 574775724 ENCODE Processing Pipeline 8bfd7225685c5a5ebb1fb1fcfe2fa620 https://www.encodeproject.org/files/ENCFF840PEJ/@@download/ENCFF840PEJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF081KQA bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 783688920 ENCODE Processing Pipeline 80dceb7a7c61132147b31cb308d4cf9b https://www.encodeproject.org/files/ENCFF081KQA/@@download/ENCFF081KQA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF114WTO bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 649056328 ENCODE Processing Pipeline dff955842dc89ba38ce90fab0b343fc2 https://www.encodeproject.org/files/ENCFF114WTO/@@download/ENCFF114WTO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF497OLG bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 358816086 ENCODE Processing Pipeline 520f487d0175484ae3b61459586a2fc4 https://www.encodeproject.org/files/ENCFF497OLG/@@download/ENCFF497OLG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF556NUU bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 562352955 ENCODE Processing Pipeline 8d20024b20d2d3f70748f07779149562 https://www.encodeproject.org/files/ENCFF556NUU/@@download/ENCFF556NUU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF381QHK bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 737207663 ENCODE Processing Pipeline e8b10e7d90f35f73a882a8f4cecc5525 https://www.encodeproject.org/files/ENCFF381QHK/@@download/ENCFF381QHK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF775LYL bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 5200828 ENCODE Processing Pipeline 4483d3930e49739e88fec409aed3a231 https://www.encodeproject.org/files/ENCFF775LYL/@@download/ENCFF775LYL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF281UYF bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF775LYL 13100369 ENCODE Processing Pipeline 31e18b72088190407fdd77036e564fd5 https://www.encodeproject.org/files/ENCFF281UYF/@@download/ENCFF281UYF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF555KBT bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 5372102 ENCODE Processing Pipeline 07e978f880df712f66bfb7ab8920c3fa https://www.encodeproject.org/files/ENCFF555KBT/@@download/ENCFF555KBT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF703XUB bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF592GAR 9743013 ENCODE Processing Pipeline 5c2e1b01d0eeb09bd1b0261d5f391a37 https://www.encodeproject.org/files/ENCFF703XUB/@@download/ENCFF703XUB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF592GAR bed narrowPeak peaks and background as input for IDR ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 4317789 ENCODE Processing Pipeline e3e147247995b22b47e846c427fd193c https://www.encodeproject.org/files/ENCFF592GAR/@@download/ENCFF592GAR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF145CKY bigBed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF946ACA 359545 ENCODE Processing Pipeline 294e251f3771c433105f2d233dc08575 https://www.encodeproject.org/files/ENCFF145CKY/@@download/ENCFF145CKY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF626CRQ bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF555KBT 11123659 ENCODE Processing Pipeline 0c0e472c6f145e8e60b822f7e3084bf6 https://www.encodeproject.org/files/ENCFF626CRQ/@@download/ENCFF626CRQ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF453CIO bed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF555KBT, ENCFF592GAR, ENCFF775LYL 122236 ENCODE Processing Pipeline bdde6d54b6812f0f5abaa9045c8f8f61 https://www.encodeproject.org/files/ENCFF453CIO/@@download/ENCFF453CIO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF782COJ bigBed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF453CIO 308442 ENCODE Processing Pipeline aef018deea221c4ba72b74a334df735c https://www.encodeproject.org/files/ENCFF782COJ/@@download/ENCFF782COJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF946ACA bed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF555KBT, ENCFF592GAR, ENCFF775LYL 153113 ENCODE Processing Pipeline 3eb48d3f5e84af61257eedd43cb78961 https://www.encodeproject.org/files/ENCFF946ACA/@@download/ENCFF946ACA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000ROM bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROU 369612806 Vishwanath Iyer, UTA 49a0bd6730c3950087edd7162a7a286d https://www.encodeproject.org/files/ENCFF000ROM/@@download/ENCFF000ROM.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000RON bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROZ 313793081 Vishwanath Iyer, UTA 24c25b458cd7e472af7cff89b91ce706 https://www.encodeproject.org/files/ENCFF000RON/@@download/ENCFF000RON.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROP bigWig base overlap signal ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 179749908 Vishwanath Iyer, UTA a2fc6645e422a6e460c66140efa93422 https://www.encodeproject.org/files/ENCFF000ROP/@@download/ENCFF000ROP.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROQ bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF000ROX 536609157 Vishwanath Iyer, UTA c7afb31b2e0b6a6c11c3f7f6793ff9cc https://www.encodeproject.org/files/ENCFF000ROQ/@@download/ENCFF000ROQ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROR bigBed narrowPeak peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USH 1981359 Vishwanath Iyer, UTA 14d8510b207b9c33af01a0ae03d7c0c3 https://www.encodeproject.org/files/ENCFF000ROR/@@download/ENCFF000ROR.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROT bigWig signal ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3940456239 Vishwanath Iyer, UTA 9f97e9172995f5241263237eb5e91b20 https://www.encodeproject.org/files/ENCFF000ROT/@@download/ENCFF000ROT.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROU fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 358306226 Vishwanath Iyer, UTA 49d078a7cc72e52fdca9c9806c9d375f https://www.encodeproject.org/files/ENCFF000ROU/@@download/ENCFF000ROU.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROV tar validation ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 50387404 Vishwanath Iyer, UTA 6ce33a140c328e68d52bd1124d610624 https://www.encodeproject.org/files/ENCFF000ROV/@@download/ENCFF000ROV.tar.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROX fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 1 33 single-ended 513185151 Vishwanath Iyer, UTA 60159eff02f764d871ed8c38882debb7 https://www.encodeproject.org/files/ENCFF000ROX/@@download/ENCFF000ROX.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROZ fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 904880702 Vishwanath Iyer, UTA 8857dc283de4486075d9220966431943 https://www.encodeproject.org/files/ENCFF000ROZ/@@download/ENCFF000ROZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001USH bed narrowPeak peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1311543 Vishwanath Iyer, UTA a6f856eb3742b57cd1515cf4669b620d https://www.encodeproject.org/files/ENCFF001USH/@@download/ENCFF001USH.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DAJ bed narrowPeak optimal idr thresholded peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 943769 ENCODE Consortium Analysis Working Group f05d542a177ee7a769c68a1f4e553b67 https://www.encodeproject.org/files/ENCFF002DAJ/@@download/ENCFF002DAJ.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF455WUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAJ 1692231 ENCODE Consortium 82f48d37678c71616d991df451482dbb https://www.encodeproject.org/files/ENCFF455WUJ/@@download/ENCFF455WUJ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF305XXH fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF433QIM 2616853626 Michael Snyder, Stanford c7b34648d7155dd3074bba633da68ba0 SRA:SRR6213408 https://www.encodeproject.org/files/ENCFF305XXH/@@download/ENCFF305XXH.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF845GWE fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF442RZV 2844853456 Michael Snyder, Stanford c597e6104f303302f33267adebd0e9d9 SRA:SRR6213407 https://www.encodeproject.org/files/ENCFF845GWE/@@download/ENCFF845GWE.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF442RZV fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF845GWE 3425590554 Michael Snyder, Stanford a7c82827b7beb049f0e6e3c1295cbae4 SRA:SRR6213407 https://www.encodeproject.org/files/ENCFF442RZV/@@download/ENCFF442RZV.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF433QIM fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF305XXH 3121335821 Michael Snyder, Stanford 9750d798f7b165fb2bce21efc67d4290 SRA:SRR6213408 https://www.encodeproject.org/files/ENCFF433QIM/@@download/ENCFF433QIM.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF297GLO bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF807MUK 5573782795 ENCODE Processing Pipeline e1631f3b8b8ac702099297fbc7ad2fa5 https://www.encodeproject.org/files/ENCFF297GLO/@@download/ENCFF297GLO.bam hg19 released mild to moderate bottlenecking ENCFF787OQV bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF807MUK 3421135760 ENCODE Processing Pipeline 0414cd62d04d70cfd5bd5839fdc42c44 https://www.encodeproject.org/files/ENCFF787OQV/@@download/ENCFF787OQV.bam hg19 released mild to moderate bottlenecking ENCFF382CMG bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF807MUK, ENCFF845GWE 6183437655 ENCODE Processing Pipeline 57c9d473c28123c743bfb1a333cbe72e https://www.encodeproject.org/files/ENCFF382CMG/@@download/ENCFF382CMG.bam hg19 released mild to moderate bottlenecking ENCFF370FGY bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF643CGH 5574972123 ENCODE Processing Pipeline b680a9c0a71f8f2d33dd6a8d6ca0ccab https://www.encodeproject.org/files/ENCFF370FGY/@@download/ENCFF370FGY.bam GRCh38 released mild to moderate bottlenecking ENCFF658QNN bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF643CGH, ENCFF845GWE 6186231523 ENCODE Processing Pipeline 20955025f3a280f3e8ab9fae25b0ae9f https://www.encodeproject.org/files/ENCFF658QNN/@@download/ENCFF658QNN.bam GRCh38 released mild to moderate bottlenecking ENCFF022YLX bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF643CGH 3424980701 ENCODE Processing Pipeline f14fc394f8e2598375a54c24438827c0 https://www.encodeproject.org/files/ENCFF022YLX/@@download/ENCFF022YLX.bam GRCh38 released mild to moderate bottlenecking ENCFF437AZE bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF807MUK, ENCFF845GWE 3930183507 ENCODE Processing Pipeline df145612e540ba293db33ee3c8bea95f https://www.encodeproject.org/files/ENCFF437AZE/@@download/ENCFF437AZE.bam hg19 released mild to moderate bottlenecking ENCFF768YUH bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF643CGH, ENCFF845GWE 3934138658 ENCODE Processing Pipeline 2051c048236233f4529b630f5d99eed0 https://www.encodeproject.org/files/ENCFF768YUH/@@download/ENCFF768YUH.bam GRCh38 released mild to moderate bottlenecking ENCFF583CFC bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 1607569930 ENCODE Processing Pipeline 4a0d23369fc12375da6b80f3e54c85bf https://www.encodeproject.org/files/ENCFF583CFC/@@download/ENCFF583CFC.bigWig hg19 released mild to moderate bottlenecking ENCFF545WCL bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 1067362723 ENCODE Processing Pipeline cb9b6e5b4171c285c3c2ce6bd258e671 https://www.encodeproject.org/files/ENCFF545WCL/@@download/ENCFF545WCL.bigWig hg19 released mild to moderate bottlenecking ENCFF177IKE bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 1077376782 ENCODE Processing Pipeline 23380b1b1021ff6ff21a6002d5143a5c https://www.encodeproject.org/files/ENCFF177IKE/@@download/ENCFF177IKE.bigWig hg19 released mild to moderate bottlenecking ENCFF349MPF bed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF150YMV, ENCFF496AHM, ENCFF943NIH 812699 ENCODE Processing Pipeline 811b29846fc1fc213785d04af598d88f https://www.encodeproject.org/files/ENCFF349MPF/@@download/ENCFF349MPF.bed.gz hg19 released mild to moderate bottlenecking ENCFF547EHX bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 1072920220 ENCODE Processing Pipeline 60cb8454ead52360cb4f5a889ae3ded0 https://www.encodeproject.org/files/ENCFF547EHX/@@download/ENCFF547EHX.bigWig hg19 released mild to moderate bottlenecking ENCFF837MVI bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 1123235192 ENCODE Processing Pipeline 0838bcf7dbd897ee5e86e0146f2fd06e https://www.encodeproject.org/files/ENCFF837MVI/@@download/ENCFF837MVI.bigWig hg19 released mild to moderate bottlenecking ENCFF682POX bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 2064910183 ENCODE Processing Pipeline ddabad592a3d1b67cf9f227ed0420fe2 https://www.encodeproject.org/files/ENCFF682POX/@@download/ENCFF682POX.bigWig hg19 released mild to moderate bottlenecking ENCFF150YMV bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 6855199 ENCODE Processing Pipeline 299024ce5c68aeb309d8c186b174ff61 https://www.encodeproject.org/files/ENCFF150YMV/@@download/ENCFF150YMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF851UFF bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF943NIH 13249549 ENCODE Processing Pipeline ce1362efd19573471393fdedfd83f4b5 https://www.encodeproject.org/files/ENCFF851UFF/@@download/ENCFF851UFF.bigBed hg19 released mild to moderate bottlenecking ENCFF112HEG bed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF150YMV, ENCFF496AHM, ENCFF943NIH 714952 ENCODE Processing Pipeline 750e265cd53447f148a1300f0821ab9c https://www.encodeproject.org/files/ENCFF112HEG/@@download/ENCFF112HEG.bed.gz hg19 released mild to moderate bottlenecking ENCFF043YIP bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF150YMV 13194714 ENCODE Processing Pipeline 7665991d19aad55d9cc7076c5beca709 https://www.encodeproject.org/files/ENCFF043YIP/@@download/ENCFF043YIP.bigBed hg19 released mild to moderate bottlenecking ENCFF285NQW bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF496AHM 13034013 ENCODE Processing Pipeline 38c14de5c062635b14d346bad036b51a https://www.encodeproject.org/files/ENCFF285NQW/@@download/ENCFF285NQW.bigBed hg19 released mild to moderate bottlenecking ENCFF943NIH bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 6948107 ENCODE Processing Pipeline f702ceabbaa2e142282da390c2da8676 https://www.encodeproject.org/files/ENCFF943NIH/@@download/ENCFF943NIH.bed.gz hg19 released mild to moderate bottlenecking ENCFF196BMD bigBed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF112HEG 1589597 ENCODE Processing Pipeline 19ed2040b3606149cb569c0769a3c3bc https://www.encodeproject.org/files/ENCFF196BMD/@@download/ENCFF196BMD.bigBed hg19 released mild to moderate bottlenecking ENCFF496AHM bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 7251552 ENCODE Processing Pipeline 2c9b0d6fa2bcc9f861044a1d764a24a5 https://www.encodeproject.org/files/ENCFF496AHM/@@download/ENCFF496AHM.bed.gz hg19 released mild to moderate bottlenecking ENCFF859QJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF349MPF 1765074 ENCODE Processing Pipeline 528d75b264c7c086a267f23b4eb45a16 https://www.encodeproject.org/files/ENCFF859QJJ/@@download/ENCFF859QJJ.bigBed hg19 released mild to moderate bottlenecking ENCFF564BXE bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 1122141925 ENCODE Processing Pipeline 269293804ce5913ceafb2ec59817bc6e https://www.encodeproject.org/files/ENCFF564BXE/@@download/ENCFF564BXE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF793IOP bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 2030707033 ENCODE Processing Pipeline 3e87be1d5a46d40b7c6cdf15eb0a614c https://www.encodeproject.org/files/ENCFF793IOP/@@download/ENCFF793IOP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF204MUZ bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 1128652222 ENCODE Processing Pipeline a7449c3c1851167bd95d0f0d5ca94455 https://www.encodeproject.org/files/ENCFF204MUZ/@@download/ENCFF204MUZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF526DXV bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 1066320089 ENCODE Processing Pipeline dfa41dd02d5da07952457e0129eb203e https://www.encodeproject.org/files/ENCFF526DXV/@@download/ENCFF526DXV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF832LAP bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 941372453 ENCODE Processing Pipeline ecabe3386a6df23ee800e1153036c186 https://www.encodeproject.org/files/ENCFF832LAP/@@download/ENCFF832LAP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF363IAI bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF543BES 13201128 ENCODE Processing Pipeline 853d49832aca1e9cfff7157223d38fc9 https://www.encodeproject.org/files/ENCFF363IAI/@@download/ENCFF363IAI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF143SLG bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF536XOF 13044236 ENCODE Processing Pipeline 276a75eb2a61f9b29bbe41af9b21aef5 https://www.encodeproject.org/files/ENCFF143SLG/@@download/ENCFF143SLG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF944TWP bigBed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF771IAW 1761091 ENCODE Processing Pipeline f0dbb9bc54b78b8ec447b658cf64a2e9 https://www.encodeproject.org/files/ENCFF944TWP/@@download/ENCFF944TWP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF771IAW bed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF505CUP, ENCFF536XOF, ENCFF543BES 810433 ENCODE Processing Pipeline 8f0d5fc4559f0600c287d6ee0bf76f26 https://www.encodeproject.org/files/ENCFF771IAW/@@download/ENCFF771IAW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF366REJ bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 1811164555 ENCODE Processing Pipeline 865b49fcb324e8799567e053ff1c9eb8 https://www.encodeproject.org/files/ENCFF366REJ/@@download/ENCFF366REJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF733BVX bed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF505CUP, ENCFF536XOF, ENCFF543BES 711977 ENCODE Processing Pipeline 458f197145574732257a48e9f588d33c https://www.encodeproject.org/files/ENCFF733BVX/@@download/ENCFF733BVX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF536XOF bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 7254006 ENCODE Processing Pipeline fee04f2286a024d0c3fb55586ab778b8 https://www.encodeproject.org/files/ENCFF536XOF/@@download/ENCFF536XOF.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF939VLA bigBed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF733BVX 1587755 ENCODE Processing Pipeline 7fb24e70fb53a0e08a00a9da7405181e https://www.encodeproject.org/files/ENCFF939VLA/@@download/ENCFF939VLA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF505CUP bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 6980742 ENCODE Processing Pipeline 198fd8a81b35cb4a9a327d9880fcd04d https://www.encodeproject.org/files/ENCFF505CUP/@@download/ENCFF505CUP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF543BES bed narrowPeak peaks and background as input for IDR ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 6856970 ENCODE Processing Pipeline b765e83b313e1ccfcce581dcdb7353e5 https://www.encodeproject.org/files/ENCFF543BES/@@download/ENCFF543BES.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF724EWR bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF505CUP 13286039 ENCODE Processing Pipeline bc752a42da1b837a74bb27b58745765d https://www.encodeproject.org/files/ENCFF724EWR/@@download/ENCFF724EWR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF586VPX bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF659AFH, ENCFF807MUK 1292545515 ENCODE Processing Pipeline 321092ae394302c2118f49968a9c4da8 https://www.encodeproject.org/files/ENCFF586VPX/@@download/ENCFF586VPX.bam hg19 released antibody characterized with exemption, low read depth ENCFF065YFX bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF807MUK, ENCFF944THM 2018711356 ENCODE Processing Pipeline 802bfb8ca11a2f11ec16334845448127 https://www.encodeproject.org/files/ENCFF065YFX/@@download/ENCFF065YFX.bam hg19 released antibody characterized with exemption, low read depth ENCFF907LQA bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 557651263 ENCODE Processing Pipeline 3c8ce9e5a1ec3acf49617edfdde1689f https://www.encodeproject.org/files/ENCFF907LQA/@@download/ENCFF907LQA.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF480SBN bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 919883153 ENCODE Processing Pipeline ca81b0dd166c3571b3e1674c9dad1c6b https://www.encodeproject.org/files/ENCFF480SBN/@@download/ENCFF480SBN.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF006YQQ bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 540870160 ENCODE Processing Pipeline dc7a362df30956357f7a4055bee42b76 https://www.encodeproject.org/files/ENCFF006YQQ/@@download/ENCFF006YQQ.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF899QCA bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 996391255 ENCODE Processing Pipeline 2134b07dc71e898bf555c8f8a19b278b https://www.encodeproject.org/files/ENCFF899QCA/@@download/ENCFF899QCA.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF502RRE bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5696563 ENCODE Processing Pipeline 32f2bd9019aab85b93463fbbde3fa570 https://www.encodeproject.org/files/ENCFF502RRE/@@download/ENCFF502RRE.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF045XQS bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 5688990 ENCODE Processing Pipeline fd1959e570e921880dd6b871081b0054 https://www.encodeproject.org/files/ENCFF045XQS/@@download/ENCFF045XQS.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF533JMI bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF502RRE 12996684 ENCODE Processing Pipeline c8f8b75ee05f4e2a91d6b2fa410aa3ef https://www.encodeproject.org/files/ENCFF533JMI/@@download/ENCFF533JMI.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF895ECZ bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 6821059 ENCODE Processing Pipeline 47b32aee93bdef1935c73c83718c7dd4 https://www.encodeproject.org/files/ENCFF895ECZ/@@download/ENCFF895ECZ.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF185HWE bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF045XQS 13408309 ENCODE Processing Pipeline a01af48cf06e578dabac783699b4b07f https://www.encodeproject.org/files/ENCFF185HWE/@@download/ENCFF185HWE.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF601ICJ bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF895ECZ 13235313 ENCODE Processing Pipeline c2a1ae30978b229377659ac5da7b640e https://www.encodeproject.org/files/ENCFF601ICJ/@@download/ENCFF601ICJ.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF015IVD bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF045XQS, ENCFF502RRE, ENCFF895ECZ 167546 ENCODE Processing Pipeline a80330cca65530179c7e4f172ee420b1 https://www.encodeproject.org/files/ENCFF015IVD/@@download/ENCFF015IVD.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF388FCW bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF015IVD 396797 ENCODE Processing Pipeline 5c36ea1868a4141975fcf8a9a60f883b https://www.encodeproject.org/files/ENCFF388FCW/@@download/ENCFF388FCW.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF134XDY bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF045XQS, ENCFF502RRE, ENCFF895ECZ 206496 ENCODE Processing Pipeline d8344e811dbec6f17020acdb4a272fc5 https://www.encodeproject.org/files/ENCFF134XDY/@@download/ENCFF134XDY.bed.gz hg19 released antibody characterized with exemption, low read depth ENCFF329SVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF134XDY 540968 ENCODE Processing Pipeline 9ecba6d73e013503633e43224ba1e986 https://www.encodeproject.org/files/ENCFF329SVQ/@@download/ENCFF329SVQ.bigBed hg19 released antibody characterized with exemption, low read depth ENCFF659AFH fastq reads ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 1 50 single-ended 1236300066 Richard Myers, HAIB 6b6ffbbd60215218e67f36ebd3320e02 SRA:SRR5331494 https://www.encodeproject.org/files/ENCFF659AFH/@@download/ENCFF659AFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF225JIA/ released antibody characterized with exemption, low read depth ENCFF944THM fastq reads ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 1 50 single-ended 1914905820 Richard Myers, HAIB 0aea4de91701152b5612ececdb21ff2b SRA:SRR5331493 https://www.encodeproject.org/files/ENCFF944THM/@@download/ENCFF944THM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released antibody characterized with exemption, low read depth ENCFF840IOC bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF659AFH, ENCFF807MUK 865886259 ENCODE Processing Pipeline 4b9f7e56fcb62f62d34227f61dc7e817 https://www.encodeproject.org/files/ENCFF840IOC/@@download/ENCFF840IOC.bam hg19 released antibody characterized with exemption, low read depth ENCFF572PHE bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF807MUK, ENCFF944THM 1455091884 ENCODE Processing Pipeline cb15bb9a0d9dc3c0fda8b4df1b963217 https://www.encodeproject.org/files/ENCFF572PHE/@@download/ENCFF572PHE.bam hg19 released antibody characterized with exemption, low read depth ENCFF672GCG bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 924037309 ENCODE Processing Pipeline 834d1af59d0b27ee1bdfefe724a09630 https://www.encodeproject.org/files/ENCFF672GCG/@@download/ENCFF672GCG.bigWig hg19 archived antibody characterized with exemption, low read depth ENCFF140GHI bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 421241567 ENCODE Processing Pipeline c8f617aa90fe8a66e063cbd74e417ddc https://www.encodeproject.org/files/ENCFF140GHI/@@download/ENCFF140GHI.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF912SRD bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 568431004 ENCODE Processing Pipeline b6a249187474b615d72b556881e9631b https://www.encodeproject.org/files/ENCFF912SRD/@@download/ENCFF912SRD.bigWig hg19 archived antibody characterized with exemption, low read depth ENCFF311FRR bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 606433388 ENCODE Processing Pipeline f0c6afc8390667d8bb9e06c3275b80e9 https://www.encodeproject.org/files/ENCFF311FRR/@@download/ENCFF311FRR.bigWig hg19 archived antibody characterized with exemption, low read depth ENCFF413GIF bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 5883774 ENCODE Processing Pipeline 9c5b278573a71d45d07c399a054649bb https://www.encodeproject.org/files/ENCFF413GIF/@@download/ENCFF413GIF.bed.gz hg19 archived antibody characterized with exemption, low read depth ENCFF794YQY bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5902503 ENCODE Processing Pipeline 27f17640ac9d66f593f212a03fe30789 https://www.encodeproject.org/files/ENCFF794YQY/@@download/ENCFF794YQY.bed.gz hg19 archived antibody characterized with exemption, low read depth ENCFF553HHF bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 6948814 ENCODE Processing Pipeline 7c4993ce9212ce866e20b999922e32fa https://www.encodeproject.org/files/ENCFF553HHF/@@download/ENCFF553HHF.bed.gz hg19 archived antibody characterized with exemption, low read depth ENCFF501CXC bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF413GIF 13440807 ENCODE Processing Pipeline 1f2e76ff5e41c070bc48e3400d29264b https://www.encodeproject.org/files/ENCFF501CXC/@@download/ENCFF501CXC.bigBed hg19 archived antibody characterized with exemption, low read depth ENCFF824RKL bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 353063159 ENCODE Processing Pipeline 0895f56903ed84dcd5272cc4e57ad829 https://www.encodeproject.org/files/ENCFF824RKL/@@download/ENCFF824RKL.bigWig hg19 released antibody characterized with exemption, low read depth ENCFF865SUF bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 1020518546 ENCODE Processing Pipeline 06da1aa2a5f52a9a7b2a76f4ade81b4f https://www.encodeproject.org/files/ENCFF865SUF/@@download/ENCFF865SUF.bigWig hg19 archived antibody characterized with exemption, low read depth ENCFF356PQJ bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF794YQY 13046742 ENCODE Processing Pipeline 2979f681e523cc4202498ec54cb1ed56 https://www.encodeproject.org/files/ENCFF356PQJ/@@download/ENCFF356PQJ.bigBed hg19 archived antibody characterized with exemption, low read depth ENCFF601ECA bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF553HHF 13237132 ENCODE Processing Pipeline eaf6053b7053266bdf54628e41bef921 https://www.encodeproject.org/files/ENCFF601ECA/@@download/ENCFF601ECA.bigBed hg19 archived antibody characterized with exemption, low read depth ENCFF132CNC bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF643CGH, ENCFF659AFH 1293921659 ENCODE Processing Pipeline 3d746d6bfeee228ba5d889d2c5d584bf https://www.encodeproject.org/files/ENCFF132CNC/@@download/ENCFF132CNC.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF117EYR bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF643CGH, ENCFF944THM 2017606843 ENCODE Processing Pipeline 07ea84fa11f4a4be792dfccda5176b13 https://www.encodeproject.org/files/ENCFF117EYR/@@download/ENCFF117EYR.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF346SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF643CGH, ENCFF659AFH 870473063 ENCODE Processing Pipeline 41e9f739b18ca49736b7443a57fb5fb5 https://www.encodeproject.org/files/ENCFF346SPJ/@@download/ENCFF346SPJ.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF386SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF643CGH, ENCFF944THM 1463075215 ENCODE Processing Pipeline 0cd3fe133f7e2556bc6510b83a90491c https://www.encodeproject.org/files/ENCFF386SPJ/@@download/ENCFF386SPJ.bam GRCh38 released antibody characterized with exemption, low read depth ENCFF983DDH bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 435452252 ENCODE Processing Pipeline a883dd552e356bfa09e4ff0a1220acf5 https://www.encodeproject.org/files/ENCFF983DDH/@@download/ENCFF983DDH.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF224PHC bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 1004074289 ENCODE Processing Pipeline 8e06fa53e69449cbf2e6d101cf13246c https://www.encodeproject.org/files/ENCFF224PHC/@@download/ENCFF224PHC.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF867OZW bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 567455313 ENCODE Processing Pipeline 3c2c7b0082d1dbf597124e87e8e44df9 https://www.encodeproject.org/files/ENCFF867OZW/@@download/ENCFF867OZW.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF398VAT bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 365788161 ENCODE Processing Pipeline cfa4aa51bf5f08d9b7cbc17b2a543aa9 https://www.encodeproject.org/files/ENCFF398VAT/@@download/ENCFF398VAT.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF909VUX bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 541750733 ENCODE Processing Pipeline 0c3151b8e9da4bf7571c6afcdf963963 https://www.encodeproject.org/files/ENCFF909VUX/@@download/ENCFF909VUX.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF562GJY bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 971760948 ENCODE Processing Pipeline af7a9a89bdbf8714ca798686539008c0 https://www.encodeproject.org/files/ENCFF562GJY/@@download/ENCFF562GJY.bigWig GRCh38 released antibody characterized with exemption, low read depth ENCFF455PYV bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 5633743 ENCODE Processing Pipeline 2187595ea0aa96a6ba5b334a009d2dee https://www.encodeproject.org/files/ENCFF455PYV/@@download/ENCFF455PYV.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF729YXW bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF194XAP 13054300 ENCODE Processing Pipeline 0aa1b6a4fb15cdf69fd8fbb681ba8f0c https://www.encodeproject.org/files/ENCFF729YXW/@@download/ENCFF729YXW.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF194XAP bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 5762378 ENCODE Processing Pipeline 2a6c137c287268a0a9158b33760653d8 https://www.encodeproject.org/files/ENCFF194XAP/@@download/ENCFF194XAP.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF888OLG bed narrowPeak peaks and background as input for IDR ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 6803695 ENCODE Processing Pipeline 5080892fa50454524b90ba348018bda7 https://www.encodeproject.org/files/ENCFF888OLG/@@download/ENCFF888OLG.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF154RHL bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF455PYV 13403797 ENCODE Processing Pipeline 1c6108162f2b6f0b9de8bd72ae08deff https://www.encodeproject.org/files/ENCFF154RHL/@@download/ENCFF154RHL.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF421VXL bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF888OLG 13247692 ENCODE Processing Pipeline 3b159f48b31d43cb728425dd9bfa077d https://www.encodeproject.org/files/ENCFF421VXL/@@download/ENCFF421VXL.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF891JAX bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194XAP, ENCFF419RSJ, ENCFF455PYV, ENCFF888OLG 175231 ENCODE Processing Pipeline b93efdb933e03fd9cbceb817f50b86f7 https://www.encodeproject.org/files/ENCFF891JAX/@@download/ENCFF891JAX.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF173NBG bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF891JAX 408517 ENCODE Processing Pipeline e093dc3456115c4489c28bf531b031a5 https://www.encodeproject.org/files/ENCFF173NBG/@@download/ENCFF173NBG.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF855SJG bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194XAP, ENCFF419RSJ, ENCFF455PYV, ENCFF888OLG 213654 ENCODE Processing Pipeline 3a660a224b00c18129ab276553653d1f https://www.encodeproject.org/files/ENCFF855SJG/@@download/ENCFF855SJG.bed.gz GRCh38 released antibody characterized with exemption, low read depth ENCFF870HED bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF855SJG 551742 ENCODE Processing Pipeline 22d38f5adda7de0de2d7325d00092c9b https://www.encodeproject.org/files/ENCFF870HED/@@download/ENCFF870HED.bigBed GRCh38 released antibody characterized with exemption, low read depth ENCFF173PXO bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF711TMS 411605 ENCODE Processing Pipeline 5e4c90c9d69fada20f8c4bb427febc79 https://www.encodeproject.org/files/ENCFF173PXO/@@download/ENCFF173PXO.bigBed hg19 archived antibody characterized with exemption, low read depth ENCFF560LXS bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194YJY 301650 ENCODE Processing Pipeline f2dc5b0b07d1e54f95b5d114fc9d3350 https://www.encodeproject.org/files/ENCFF560LXS/@@download/ENCFF560LXS.bigBed hg19 archived antibody characterized with exemption, low read depth ENCFF194YJY bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF413GIF, ENCFF553HHF, ENCFF794YQY 144623 ENCODE Processing Pipeline f06e872ab0f8312854eec27f9bac80f4 https://www.encodeproject.org/files/ENCFF194YJY/@@download/ENCFF194YJY.bed.gz hg19 archived antibody characterized with exemption, low read depth ENCFF711TMS bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF413GIF, ENCFF553HHF, ENCFF794YQY 173931 ENCODE Processing Pipeline ab21595564b935d834567abac5d3a9c9 https://www.encodeproject.org/files/ENCFF711TMS/@@download/ENCFF711TMS.bed.gz hg19 archived antibody characterized with exemption, low read depth ENCFF023QAR fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF785LRF 3707078511 Michael Snyder, Stanford 9284868ca2401b3d850d14d2006c9559 SRA:SRR6214030 https://www.encodeproject.org/files/ENCFF023QAR/@@download/ENCFF023QAR.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF263DDP fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF861XUI 2077219288 Michael Snyder, Stanford 0021e434d06314005cbebded4f9c0273 SRA:SRR6214029 https://www.encodeproject.org/files/ENCFF263DDP/@@download/ENCFF263DDP.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF785LRF fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF023QAR 3095909210 Michael Snyder, Stanford be4ad2be42e67718bca432d089f77dbf SRA:SRR6214030 https://www.encodeproject.org/files/ENCFF785LRF/@@download/ENCFF785LRF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF861XUI fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF263DDP 2498555758 Michael Snyder, Stanford 64603ce7eb38ef61cafaa71fd752cc6d SRA:SRR6214029 https://www.encodeproject.org/files/ENCFF861XUI/@@download/ENCFF861XUI.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF604LZU bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF807MUK, ENCFF861XUI 4491969166 ENCODE Processing Pipeline ba83209f750abbc02ce49ec76a1e6238 https://www.encodeproject.org/files/ENCFF604LZU/@@download/ENCFF604LZU.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF950ZBS bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF807MUK, ENCFF861XUI 2587570927 ENCODE Processing Pipeline e792c277302c3b16f675d829839cf135 https://www.encodeproject.org/files/ENCFF950ZBS/@@download/ENCFF950ZBS.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF258PBX bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF643CGH, ENCFF785LRF 6507933758 ENCODE Processing Pipeline decc5003f5f484bee9b3375f7dd6ef11 https://www.encodeproject.org/files/ENCFF258PBX/@@download/ENCFF258PBX.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF601CNB bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF785LRF, ENCFF807MUK 6506712541 ENCODE Processing Pipeline 784c6e6bf42e7b2fa01cc2e52510b24d https://www.encodeproject.org/files/ENCFF601CNB/@@download/ENCFF601CNB.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF831ANK bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF643CGH, ENCFF785LRF 3039290727 ENCODE Processing Pipeline 6a9ce81f18df2772801560aa3db834aa https://www.encodeproject.org/files/ENCFF831ANK/@@download/ENCFF831ANK.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF699MBA bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF785LRF, ENCFF807MUK 3035032348 ENCODE Processing Pipeline f62b4a1207f05ca657fbd0db8356c5ed https://www.encodeproject.org/files/ENCFF699MBA/@@download/ENCFF699MBA.bam hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF115DER bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF643CGH, ENCFF861XUI 4492991086 ENCODE Processing Pipeline b9474936328b1d0c63475347d2b5b770 https://www.encodeproject.org/files/ENCFF115DER/@@download/ENCFF115DER.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF159BQG bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF643CGH, ENCFF861XUI 2591621597 ENCODE Processing Pipeline bbc3fe3f43c2dfec4bb5be7539221da0 https://www.encodeproject.org/files/ENCFF159BQG/@@download/ENCFF159BQG.bam GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF104GOQ bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 912336281 ENCODE Processing Pipeline f13c63967c5c0ff85cdba94e70907f33 https://www.encodeproject.org/files/ENCFF104GOQ/@@download/ENCFF104GOQ.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF823GZT bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF271HBJ 12977553 ENCODE Processing Pipeline cfc2d1696fdbebb33be17fd91e659c47 https://www.encodeproject.org/files/ENCFF823GZT/@@download/ENCFF823GZT.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF826BGL bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 1579189543 ENCODE Processing Pipeline c249b3445b690182a48dd02c858d2e89 https://www.encodeproject.org/files/ENCFF826BGL/@@download/ENCFF826BGL.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF271HBJ bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 7173201 ENCODE Processing Pipeline 19438d81ccf2ca3edeb8e6f6d23b6993 https://www.encodeproject.org/files/ENCFF271HBJ/@@download/ENCFF271HBJ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF874DBO bigBed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF444FZU 1155697 ENCODE Processing Pipeline 384fef61add51387aad41c1aa34fc283 https://www.encodeproject.org/files/ENCFF874DBO/@@download/ENCFF874DBO.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF960HDA bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 977189912 ENCODE Processing Pipeline 533993152c09aa092ec2e50323cc94cd https://www.encodeproject.org/files/ENCFF960HDA/@@download/ENCFF960HDA.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF914CTT bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 1860489538 ENCODE Processing Pipeline 56f0282dad94926c42dfde85ad4c8ddc https://www.encodeproject.org/files/ENCFF914CTT/@@download/ENCFF914CTT.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF564DIM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF855RKW 13223167 ENCODE Processing Pipeline 49dc98c9c7d3e04c12d7ee677fa8d379 https://www.encodeproject.org/files/ENCFF564DIM/@@download/ENCFF564DIM.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF456YII bed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF040LOQ, ENCFF271HBJ, ENCFF855RKW 635087 ENCODE Processing Pipeline d393dfe420253ec3d9141425df3f5a5b https://www.encodeproject.org/files/ENCFF456YII/@@download/ENCFF456YII.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF976YJV bigBed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF456YII 1378207 ENCODE Processing Pipeline ef14f99529327d01bb453bcfc1afcf3e https://www.encodeproject.org/files/ENCFF976YJV/@@download/ENCFF976YJV.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF202KTR bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 896837967 ENCODE Processing Pipeline d495db03ecd06e09675dd45ba873c3a8 https://www.encodeproject.org/files/ENCFF202KTR/@@download/ENCFF202KTR.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF040LOQ bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 6545854 ENCODE Processing Pipeline e0d3f12c791753d1349de45edbfde9f7 https://www.encodeproject.org/files/ENCFF040LOQ/@@download/ENCFF040LOQ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF444FZU bed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF040LOQ, ENCFF271HBJ, ENCFF855RKW 512344 ENCODE Processing Pipeline d043d4d8050cece9f235e8cb422bb9c8 https://www.encodeproject.org/files/ENCFF444FZU/@@download/ENCFF444FZU.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF340FPE bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 998180448 ENCODE Processing Pipeline 66b44a5352acb815d7bbbae7b9eaca72 https://www.encodeproject.org/files/ENCFF340FPE/@@download/ENCFF340FPE.bigWig hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF855RKW bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 6488095 ENCODE Processing Pipeline d4dfe31150b5ecc1afaad5c0b16c4845 https://www.encodeproject.org/files/ENCFF855RKW/@@download/ENCFF855RKW.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF311NGT bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF040LOQ 13249990 ENCODE Processing Pipeline d0d7b957a30412cacb44bcc58229553c https://www.encodeproject.org/files/ENCFF311NGT/@@download/ENCFF311NGT.bigBed hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF828AZJ bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 879424927 ENCODE Processing Pipeline 7e90180eba653c8fd34b5a2e1c0741e5 https://www.encodeproject.org/files/ENCFF828AZJ/@@download/ENCFF828AZJ.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF344NUU bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 1860410067 ENCODE Processing Pipeline fab3ae12142bcb45ad49acfa2d8ac2d3 https://www.encodeproject.org/files/ENCFF344NUU/@@download/ENCFF344NUU.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF030NUR bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF036YVM 13230408 ENCODE Processing Pipeline 86dce8a803bac5b8468512d1aeefaba4 https://www.encodeproject.org/files/ENCFF030NUR/@@download/ENCFF030NUR.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF771LQC bigBed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF199EDM 1167536 ENCODE Processing Pipeline 2ce28523833f658836650b4a073c9e98 https://www.encodeproject.org/files/ENCFF771LQC/@@download/ENCFF771LQC.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF560BOJ bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 913118370 ENCODE Processing Pipeline 48a1b42cae9423ba967c87caacceb6a9 https://www.encodeproject.org/files/ENCFF560BOJ/@@download/ENCFF560BOJ.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF298AIX bed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF036YVM, ENCFF087UQB, ENCFF419RSJ, ENCFF478WIS 639464 ENCODE Processing Pipeline 32405453d0d042d69827e46fb12abe14 https://www.encodeproject.org/files/ENCFF298AIX/@@download/ENCFF298AIX.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF754CHY bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 896590233 ENCODE Processing Pipeline 5652a6933bde283d4fe4f0ebaff7a402 https://www.encodeproject.org/files/ENCFF754CHY/@@download/ENCFF754CHY.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF941PXI bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 1622117175 ENCODE Processing Pipeline ed2ce231aabc580407757bb80ba21351 https://www.encodeproject.org/files/ENCFF941PXI/@@download/ENCFF941PXI.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF478WIS bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 7203373 ENCODE Processing Pipeline a32813ff4be27ff8e602ec553d7bd370 https://www.encodeproject.org/files/ENCFF478WIS/@@download/ENCFF478WIS.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF343CPM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF478WIS 13013438 ENCODE Processing Pipeline ab079e62b5bb644ca35109eb21dabf8b https://www.encodeproject.org/files/ENCFF343CPM/@@download/ENCFF343CPM.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF199EDM bed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF036YVM, ENCFF087UQB, ENCFF419RSJ, ENCFF478WIS 520370 ENCODE Processing Pipeline 97bf249f53a1322c506df698239e157b https://www.encodeproject.org/files/ENCFF199EDM/@@download/ENCFF199EDM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF265GOV bigBed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF298AIX 1385457 ENCODE Processing Pipeline b97994ce4e72274b04878b93ce22aa90 https://www.encodeproject.org/files/ENCFF265GOV/@@download/ENCFF265GOV.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF438TTB bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 976405301 ENCODE Processing Pipeline ee92b9d892e9e919320bf098e746669d https://www.encodeproject.org/files/ENCFF438TTB/@@download/ENCFF438TTB.bigWig GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF087UQB bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 6565054 ENCODE Processing Pipeline aaf603edfc4bddefd0dd0074c73d2f09 https://www.encodeproject.org/files/ENCFF087UQB/@@download/ENCFF087UQB.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF036YVM bed narrowPeak peaks and background as input for IDR ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 6491397 ENCODE Processing Pipeline 93219b3b2b8a62092e8b096f21feef4a https://www.encodeproject.org/files/ENCFF036YVM/@@download/ENCFF036YVM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF894ODM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF087UQB 13280688 ENCODE Processing Pipeline 03173b6ee043407b936397b06d508c22 https://www.encodeproject.org/files/ENCFF894ODM/@@download/ENCFF894ODM.bigBed GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking ENCFF000VWS bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VXD 364929056 Michael Snyder, Stanford 97dfc3f42cecedd86a0062b08430b971 https://www.encodeproject.org/files/ENCFF000VWS/@@download/ENCFF000VWS.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VWT bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEK 538784 Michael Snyder, Stanford 7c8c8d62cad019f51fbd20096479dae1 https://www.encodeproject.org/files/ENCFF000VWT/@@download/ENCFF000VWT.bigBed hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VWU bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VXI 501808267 Michael Snyder, Stanford 15c9ab1bf9ca3976d93d10349ac5b26f https://www.encodeproject.org/files/ENCFF000VWU/@@download/ENCFF000VWU.bam hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VWW bigWig signal ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 309235830 Michael Snyder, Stanford 937ffd69e5d4ed84a2d3a84f25285027 https://www.encodeproject.org/files/ENCFF000VWW/@@download/ENCFF000VWW.bigWig hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000VXD fastq reads ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 821754419 Michael Snyder, Stanford 1355750990a2c1459a0f36fb3947b277 https://www.encodeproject.org/files/ENCFF000VXD/@@download/ENCFF000VXD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released borderline replicate concordance, inconsistent control read length, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000VXI fastq reads ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1020709586 Michael Snyder, Stanford c6b2774b5f8f08adaf300d89466bb7ab https://www.encodeproject.org/files/ENCFF000VXI/@@download/ENCFF000VXI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released borderline replicate concordance, inconsistent control read length, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001VEK bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 290220 Michael Snyder, Stanford 16c07e6692536c56243b4faf6c4b6c2a https://www.encodeproject.org/files/ENCFF001VEK/@@download/ENCFF001VEK.bed.gz hg19 archived borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF465UKD bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF643CGH 1116958899 ENCODE Processing Pipeline bfd25fa7d39c1da93657f3e0bddda288 https://www.encodeproject.org/files/ENCFF465UKD/@@download/ENCFF465UKD.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF489KNC bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF643CGH 884724485 ENCODE Processing Pipeline b7f1cad76e3e6a7939409c8d0f4e7c2f https://www.encodeproject.org/files/ENCFF489KNC/@@download/ENCFF489KNC.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF935OOR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF643CGH 670126053 ENCODE Processing Pipeline 5d5c19d35d8e5976f61e7fb92fe3a301 https://www.encodeproject.org/files/ENCFF935OOR/@@download/ENCFF935OOR.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF519GVE bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF643CGH 494931638 ENCODE Processing Pipeline e31bbb788c62f1aef00040428ade11b4 https://www.encodeproject.org/files/ENCFF519GVE/@@download/ENCFF519GVE.bam GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF962GER bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF807MUK 880737510 ENCODE Processing Pipeline 3a48d059529dfdd1064d85f0b9c1a5f5 https://www.encodeproject.org/files/ENCFF962GER/@@download/ENCFF962GER.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF920XYY bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF807MUK 1110887097 ENCODE Processing Pipeline e8cad1f1368d4ef66d6bf58fd2cf0e66 https://www.encodeproject.org/files/ENCFF920XYY/@@download/ENCFF920XYY.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF205RMR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF807MUK 493320684 ENCODE Processing Pipeline 445adae8bfe5c17c9dac401c0d8b0a0e https://www.encodeproject.org/files/ENCFF205RMR/@@download/ENCFF205RMR.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF083VSQ bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF807MUK 669689385 ENCODE Processing Pipeline b583afe624ddb0aab2f099ea62fae064 https://www.encodeproject.org/files/ENCFF083VSQ/@@download/ENCFF083VSQ.bam hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF308RNF bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 194005028 ENCODE Processing Pipeline 4ce756473cfb60390b444d87a080db43 https://www.encodeproject.org/files/ENCFF308RNF/@@download/ENCFF308RNF.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF505BOW bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 218294487 ENCODE Processing Pipeline badc0e2e36e6dcc153f238dee5ba97e8 https://www.encodeproject.org/files/ENCFF505BOW/@@download/ENCFF505BOW.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF816DRH bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 160800960 ENCODE Processing Pipeline 0bf3a8e7880d10629d5cf96e8751dd43 https://www.encodeproject.org/files/ENCFF816DRH/@@download/ENCFF816DRH.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF303TVZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF271PVK, ENCFF434CQV, ENCFF678BIU 36479 ENCODE Processing Pipeline 814f0bb635cc8a5600eb2018921ab663 https://www.encodeproject.org/files/ENCFF303TVZ/@@download/ENCFF303TVZ.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF551LWV bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 71781328 ENCODE Processing Pipeline eda3c4b27806bb4bfb7c08ce3f960fd8 https://www.encodeproject.org/files/ENCFF551LWV/@@download/ENCFF551LWV.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF660VHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF303TVZ 115297 ENCODE Processing Pipeline 331ef8540a82cdae1ed5b17d3bdaad3f https://www.encodeproject.org/files/ENCFF660VHC/@@download/ENCFF660VHC.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF744MVR bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 232592649 ENCODE Processing Pipeline 48c8d44e013cec3c4be56e7431b0e9b6 https://www.encodeproject.org/files/ENCFF744MVR/@@download/ENCFF744MVR.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF431TJS bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 449386393 ENCODE Processing Pipeline 7c2e39c74e82eecb305ff01f74a47aad https://www.encodeproject.org/files/ENCFF431TJS/@@download/ENCFF431TJS.bigWig hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF678BIU bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 3364966 ENCODE Processing Pipeline d6c07a3b94a1fe925fb64986b72cb4d2 https://www.encodeproject.org/files/ENCFF678BIU/@@download/ENCFF678BIU.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF271PVK bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 3911417 ENCODE Processing Pipeline b1a4ae07c6b36e5ead839e85e0b59224 https://www.encodeproject.org/files/ENCFF271PVK/@@download/ENCFF271PVK.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF434CQV bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 3616303 ENCODE Processing Pipeline dd542aa81f9d46b5460ec319fc70bc21 https://www.encodeproject.org/files/ENCFF434CQV/@@download/ENCFF434CQV.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF361EQB bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF678BIU 7211549 ENCODE Processing Pipeline 0d96f62717aae4d63251a7fbefa30dc5 https://www.encodeproject.org/files/ENCFF361EQB/@@download/ENCFF361EQB.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF169DMC bed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF271PVK, ENCFF434CQV, ENCFF678BIU 31231 ENCODE Processing Pipeline cc2907c0d39515f81885744191d6045e https://www.encodeproject.org/files/ENCFF169DMC/@@download/ENCFF169DMC.bed.gz hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF325FVO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF169DMC 106805 ENCODE Processing Pipeline d9e83ed24c24e686dc4f47a490d0cb23 https://www.encodeproject.org/files/ENCFF325FVO/@@download/ENCFF325FVO.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF270ACF bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF434CQV 7579151 ENCODE Processing Pipeline 6defd6974dcec4fe1a01a99e95aabd01 https://www.encodeproject.org/files/ENCFF270ACF/@@download/ENCFF270ACF.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF193HBV bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF271PVK 10581897 ENCODE Processing Pipeline fdf699bebcda06b3c3828da902404268 https://www.encodeproject.org/files/ENCFF193HBV/@@download/ENCFF193HBV.bigBed hg19 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF949NJX bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 218443611 ENCODE Processing Pipeline fcaf30dc1ea4f9870c8ecd96d1b14ec3 https://www.encodeproject.org/files/ENCFF949NJX/@@download/ENCFF949NJX.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF652AUB bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 71815440 ENCODE Processing Pipeline 8dbf35a6dbfa5ba843ae7c5b1658dc16 https://www.encodeproject.org/files/ENCFF652AUB/@@download/ENCFF652AUB.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF499ZRE bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 3618252 ENCODE Processing Pipeline 0683e0c9383655520f7b34a0fd7f44f4 https://www.encodeproject.org/files/ENCFF499ZRE/@@download/ENCFF499ZRE.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF684JML bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 193884765 ENCODE Processing Pipeline e3500d8ae389886f0912fcd050d2803f https://www.encodeproject.org/files/ENCFF684JML/@@download/ENCFF684JML.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF024POC bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 160877690 ENCODE Processing Pipeline b1cd4f0dac0fcde4bfbdcf5d81e46e0f https://www.encodeproject.org/files/ENCFF024POC/@@download/ENCFF024POC.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF778TNJ bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 231931473 ENCODE Processing Pipeline 4c1a0a8ca257e179022701bdbbc365f3 https://www.encodeproject.org/files/ENCFF778TNJ/@@download/ENCFF778TNJ.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF294WAI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF719MXF 121630 ENCODE Processing Pipeline 2593e66c49e5510753f19c4b888eaa49 https://www.encodeproject.org/files/ENCFF294WAI/@@download/ENCFF294WAI.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF349ZBJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF823NYZ 107832 ENCODE Processing Pipeline 60c3d13ca1eb3acd17dba616d9f43e33 https://www.encodeproject.org/files/ENCFF349ZBJ/@@download/ENCFF349ZBJ.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF595QZS bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 450240031 ENCODE Processing Pipeline 1229aae6480ffffd9b5faee585c3d74c https://www.encodeproject.org/files/ENCFF595QZS/@@download/ENCFF595QZS.bigWig GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF584ANN bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 3361947 ENCODE Processing Pipeline 1e1470c900a23965d8e83852a5ed4974 https://www.encodeproject.org/files/ENCFF584ANN/@@download/ENCFF584ANN.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF037RJX bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF499ZRE 7582617 ENCODE Processing Pipeline db0db830f65b1c7cde1cfd44c2a051a5 https://www.encodeproject.org/files/ENCFF037RJX/@@download/ENCFF037RJX.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF849NNY bed narrowPeak peaks and background as input for IDR ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 3908600 ENCODE Processing Pipeline e2ccbbb6323f854c8c7227d0976deb82 https://www.encodeproject.org/files/ENCFF849NNY/@@download/ENCFF849NNY.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF128DMU bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF584ANN 7207078 ENCODE Processing Pipeline 683fdf6215016579b257df7f343016d7 https://www.encodeproject.org/files/ENCFF128DMU/@@download/ENCFF128DMU.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF101MRQ bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF849NNY 10586175 ENCODE Processing Pipeline 73171fbcfe9c383dec19149f75588a3c https://www.encodeproject.org/files/ENCFF101MRQ/@@download/ENCFF101MRQ.bigBed GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF719MXF bed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF499ZRE, ENCFF584ANN, ENCFF849NNY 41175 ENCODE Processing Pipeline 8b84ec83c48271bb2b61da7e872c9821 https://www.encodeproject.org/files/ENCFF719MXF/@@download/ENCFF719MXF.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF823NYZ bed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF499ZRE, ENCFF584ANN, ENCFF849NNY 31502 ENCODE Processing Pipeline 92fe103819a4e2b86c7b7dc84b57743f https://www.encodeproject.org/files/ENCFF823NYZ/@@download/ENCFF823NYZ.bed.gz GRCh38 released borderline replicate concordance, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF017QRM fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF805JBH 2808257050 Michael Snyder, Stanford c87ed8b81c8e18e43e851d8eef02ca18 SRA:SRR6214376 https://www.encodeproject.org/files/ENCFF017QRM/@@download/ENCFF017QRM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF805JBH fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF017QRM 3191734554 Michael Snyder, Stanford 8b163f7dd77a878045861d0c12739dd2 SRA:SRR6214376 https://www.encodeproject.org/files/ENCFF805JBH/@@download/ENCFF805JBH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF194BDT fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF209IJT 2828404865 Michael Snyder, Stanford 18e78b74d8a8363b5a147ea5277d92a7 SRA:SRR6214377 https://www.encodeproject.org/files/ENCFF194BDT/@@download/ENCFF194BDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF209IJT fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF194BDT 3148028088 Michael Snyder, Stanford b4f36949c2b53309b7f35b86a4183c9e SRA:SRR6214377 https://www.encodeproject.org/files/ENCFF209IJT/@@download/ENCFF209IJT.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF678UMR bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF805JBH, ENCFF807MUK 5108333092 ENCODE Processing Pipeline 50781bb424fd64b15e41eb48c8ac041f https://www.encodeproject.org/files/ENCFF678UMR/@@download/ENCFF678UMR.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF828AOH bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF807MUK 5136910777 ENCODE Processing Pipeline 3b4930820f509b07ee95cfdd954d0168 https://www.encodeproject.org/files/ENCFF828AOH/@@download/ENCFF828AOH.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF812WOT bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF643CGH 5134694921 ENCODE Processing Pipeline de8dd9f91fd99d84b14121dd4d713b04 https://www.encodeproject.org/files/ENCFF812WOT/@@download/ENCFF812WOT.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF236GOA bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF643CGH 3241851579 ENCODE Processing Pipeline af06966b5edc76baee5fdfeb4e239d15 https://www.encodeproject.org/files/ENCFF236GOA/@@download/ENCFF236GOA.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF537UPI bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF643CGH, ENCFF805JBH 5104507959 ENCODE Processing Pipeline 3583b14f55acabc7538b0a4123f16023 https://www.encodeproject.org/files/ENCFF537UPI/@@download/ENCFF537UPI.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF949DKV bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF807MUK 3236452654 ENCODE Processing Pipeline 6a69b78ed811b81768f2f83ea7a66c38 https://www.encodeproject.org/files/ENCFF949DKV/@@download/ENCFF949DKV.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF126ECH bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF805JBH, ENCFF807MUK 3154484103 ENCODE Processing Pipeline bb319356ff8aef50d0a6052aa48eec11 https://www.encodeproject.org/files/ENCFF126ECH/@@download/ENCFF126ECH.bam hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF785FLS bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF643CGH, ENCFF805JBH 3160883822 ENCODE Processing Pipeline 2d335a54a7838ff9c17951f74a2536a8 https://www.encodeproject.org/files/ENCFF785FLS/@@download/ENCFF785FLS.bam GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF901VNK bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 1128709286 ENCODE Processing Pipeline 1279ba3ac84ef675483b4c2e8f22532f https://www.encodeproject.org/files/ENCFF901VNK/@@download/ENCFF901VNK.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF657GPM bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 1062798220 ENCODE Processing Pipeline 7812d0cffca094681de6b099f7a75248 https://www.encodeproject.org/files/ENCFF657GPM/@@download/ENCFF657GPM.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF165WVA bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 2160283143 ENCODE Processing Pipeline 866a07a95406941b5e12e16128c1249e https://www.encodeproject.org/files/ENCFF165WVA/@@download/ENCFF165WVA.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF151RRG bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 1986669405 ENCODE Processing Pipeline 05646f9c8a43cc173411b8a9fe9bee73 https://www.encodeproject.org/files/ENCFF151RRG/@@download/ENCFF151RRG.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF862GCR bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF041WNR 11438886 ENCODE Processing Pipeline 5b1987e59e082bef7afccbece08a11ae https://www.encodeproject.org/files/ENCFF862GCR/@@download/ENCFF862GCR.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF578XEH bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 1186689800 ENCODE Processing Pipeline 324edd663f2467ac438870d7b0f9bc1d https://www.encodeproject.org/files/ENCFF578XEH/@@download/ENCFF578XEH.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF119UKJ bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 5915378 ENCODE Processing Pipeline bcb85655ff06ed19a2fc2aa516084aaf https://www.encodeproject.org/files/ENCFF119UKJ/@@download/ENCFF119UKJ.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF685WLQ bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 5975222 ENCODE Processing Pipeline e1a4eb0ab7cac001a530003ac856e94e https://www.encodeproject.org/files/ENCFF685WLQ/@@download/ENCFF685WLQ.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF315ORF bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 7079066 ENCODE Processing Pipeline 7419e99395ce2c80800b476ad4613771 https://www.encodeproject.org/files/ENCFF315ORF/@@download/ENCFF315ORF.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF701GLE bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF685WLQ 11531715 ENCODE Processing Pipeline fa6c32b881b1496006af7ba809e45755 https://www.encodeproject.org/files/ENCFF701GLE/@@download/ENCFF701GLE.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF767ZHD bigBed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF538XDH 375520 ENCODE Processing Pipeline bc62e79f1a741e4882f696d15bbfd86d https://www.encodeproject.org/files/ENCFF767ZHD/@@download/ENCFF767ZHD.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF063GEV bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 1192705462 ENCODE Processing Pipeline 90b93e26803c6e90854340b4cb6415ec https://www.encodeproject.org/files/ENCFF063GEV/@@download/ENCFF063GEV.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF808WNB bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF315ORF 11454406 ENCODE Processing Pipeline b405de4ecb7bef075657e0a293b02af3 https://www.encodeproject.org/files/ENCFF808WNB/@@download/ENCFF808WNB.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF846PAN bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 1208232861 ENCODE Processing Pipeline 5fbae3c75833aa3c9703f2086d5b38dc https://www.encodeproject.org/files/ENCFF846PAN/@@download/ENCFF846PAN.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF880USY bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 1123549274 ENCODE Processing Pipeline d3cbe5d121917c262321dcede883d795 https://www.encodeproject.org/files/ENCFF880USY/@@download/ENCFF880USY.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF579NTH bigBed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF381SBC 428897 ENCODE Processing Pipeline 7d65c3c2426dfcdb30b9c917766a4d82 https://www.encodeproject.org/files/ENCFF579NTH/@@download/ENCFF579NTH.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF230QEQ bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 5918946 ENCODE Processing Pipeline 4a88be15eb67be41308b604522254ce3 https://www.encodeproject.org/files/ENCFF230QEQ/@@download/ENCFF230QEQ.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF678JVP bigBed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF462AKP 433193 ENCODE Processing Pipeline 553bcb1c8c3d4177d7392b3ca236bb4c https://www.encodeproject.org/files/ENCFF678JVP/@@download/ENCFF678JVP.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF941NOU bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 1203645483 ENCODE Processing Pipeline fdbe055fdb5b2a1012e78040b398f0ea https://www.encodeproject.org/files/ENCFF941NOU/@@download/ENCFF941NOU.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF510XVV bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 1123838334 ENCODE Processing Pipeline 6b75c6f2503b9a4f709e37bf1126c8d6 https://www.encodeproject.org/files/ENCFF510XVV/@@download/ENCFF510XVV.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF744QJM bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 5987091 ENCODE Processing Pipeline 192b958278b48b9d5b64111d962f62c9 https://www.encodeproject.org/files/ENCFF744QJM/@@download/ENCFF744QJM.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF225GPH bigBed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF035BOY 381371 ENCODE Processing Pipeline 6108a5f3722ea4d7221f44f980fe3215 https://www.encodeproject.org/files/ENCFF225GPH/@@download/ENCFF225GPH.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF111MGQ bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 1920692184 ENCODE Processing Pipeline f705ac4dcfd1b7ea9a79cc8f04e73a48 https://www.encodeproject.org/files/ENCFF111MGQ/@@download/ENCFF111MGQ.bigWig hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF041WNR bed narrowPeak peaks and background as input for IDR ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 7061204 ENCODE Processing Pipeline 6d67e1b6f586f91869c2e7319efe2e5a https://www.encodeproject.org/files/ENCFF041WNR/@@download/ENCFF041WNR.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF641GPG bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF119UKJ 11441072 ENCODE Processing Pipeline 68bb722b3cb5136b779c4c7a5da315fc https://www.encodeproject.org/files/ENCFF641GPG/@@download/ENCFF641GPG.bigBed hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF035BOY bed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF230QEQ, ENCFF315ORF, ENCFF419RSJ, ENCFF744QJM 166655 ENCODE Processing Pipeline 173c7e9d9767cdc54ad8cdb5d64c0036 https://www.encodeproject.org/files/ENCFF035BOY/@@download/ENCFF035BOY.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF538XDH bed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF041WNR, ENCFF119UKJ, ENCFF685WLQ 163852 ENCODE Processing Pipeline 9e1ac4889ae50348ad6e94c9915c5570 https://www.encodeproject.org/files/ENCFF538XDH/@@download/ENCFF538XDH.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF381SBC bed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF041WNR, ENCFF119UKJ, ENCFF685WLQ 198894 ENCODE Processing Pipeline 4eae90be6d7c11e1201772554bef3773 https://www.encodeproject.org/files/ENCFF381SBC/@@download/ENCFF381SBC.bed.gz hg19 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF980IVI bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 2136439972 ENCODE Processing Pipeline e9f081841ef5adcb6f6a5579836c1a95 https://www.encodeproject.org/files/ENCFF980IVI/@@download/ENCFF980IVI.bigWig GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF488PEW bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF230QEQ 11457796 ENCODE Processing Pipeline 3bca08aabcab1638c3513674e873d3e9 https://www.encodeproject.org/files/ENCFF488PEW/@@download/ENCFF488PEW.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF906TFF bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF744QJM 11555747 ENCODE Processing Pipeline 79255edf063c1dc6970a9be94993c40a https://www.encodeproject.org/files/ENCFF906TFF/@@download/ENCFF906TFF.bigBed GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking ENCFF462AKP bed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF230QEQ, ENCFF315ORF, ENCFF419RSJ, ENCFF744QJM 200694 ENCODE Processing Pipeline 6d46f4a9cd441f9c68fbf2e24a762559 https://www.encodeproject.org/files/ENCFF462AKP/@@download/ENCFF462AKP.bed.gz GRCh38 released moderate library complexity, antibody characterized with exemption, mild to moderate bottlenecking