## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[LUC1-H3K36ac.2x25mers.hg38.unique.bam] OUTPUT=LUC1-H3K36ac.2x25mers.hg38.unique.dedup.bam METRICS_FILE=LUC1-H3K36ac.2x25mers.hg38.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Feb 01 14:19:31 PST 2023 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 4910550 2429034 0 702443 446970 0.143048 37490944 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.093734 2.0 2.053197 3.0 2.894872 4.0 3.63322 5.0 4.280924 6.0 4.849114 7.0 5.34755 8.0 5.784796 9.0 6.168364 10.0 6.504843 11.0 6.800014 12.0 7.05895 13.0 7.286097 14.0 7.485358 15.0 7.660157 16.0 7.813498 17.0 7.948013 18.0 8.066015 19.0 8.16953 20.0 8.260337 21.0 8.339997 22.0 8.409877 23.0 8.471178 24.0 8.524954 25.0 8.572128 26.0 8.613511 27.0 8.649813 28.0 8.681659 29.0 8.709595 30.0 8.734102 31.0 8.7556 32.0 8.774459 33.0 8.791002 34.0 8.805515 35.0 8.818246 36.0 8.829414 37.0 8.839211 38.0 8.847806 39.0 8.855345 40.0 8.861959 41.0 8.86776 42.0 8.87285 43.0 8.877315 44.0 8.881231 45.0 8.884667 46.0 8.887681 47.0 8.890325 48.0 8.892645 49.0 8.894679 50.0 8.896464 51.0 8.89803 52.0 8.899403 53.0 8.900608 54.0 8.901665 55.0 8.902593 56.0 8.903406 57.0 8.90412 58.0 8.904745 59.0 8.905295 60.0 8.905776 61.0 8.906199 62.0 8.90657 63.0 8.906895 64.0 8.90718 65.0 8.90743 66.0 8.90765 67.0 8.907842 68.0 8.908011 69.0 8.908159 70.0 8.908289 71.0 8.908403 72.0 8.908503 73.0 8.908591 74.0 8.908668 75.0 8.908736 76.0 8.908795 77.0 8.908847 78.0 8.908893 79.0 8.908933 80.0 8.908968 81.0 8.908998 82.0 8.909025 83.0 8.909049 84.0 8.90907 85.0 8.909088 86.0 8.909104 87.0 8.909118 88.0 8.90913 89.0 8.909141 90.0 8.909151 91.0 8.909159 92.0 8.909166 93.0 8.909173 94.0 8.909178 95.0 8.909183 96.0 8.909187 97.0 8.909191 98.0 8.909195 99.0 8.909198 100.0 8.9092