# R script for Peak Model
#  -- generated by MACS
p <- c(0.00737097115002,0.00786236922669,0.00933656345669,0.01031935961,0.0113021557634,0.0108107576867,0.00835376730335,0.00786236922669,0.00737097115002,0.00638817499668,0.00589677692002,0.00540537884335,0.00442258269001,0.00343978653668,0.00343978653668,0.00343978653668,0.00393118461334,0.00442258269001,0.00442258269001,0.00442258269001,0.00442258269001,0.00540537884335,0.00589677692002,0.00737097115002,0.00835376730335,0.00835376730335,0.00786236922669,0.00884516538002,0.00933656345669,0.01031935961,0.0113021557634,0.0113021557634,0.0108107576867,0.01179355384,0.00982796153336,0.00884516538002,0.00933656345669,0.00786236922669,0.00835376730335,0.00786236922669,0.00835376730335,0.00786236922669,0.00786236922669,0.00589677692002,0.00638817499668,0.00786236922669,0.00737097115002,0.00884516538002,0.00737097115002,0.00786236922669,0.00638817499668,0.00687957307335,0.00687957307335,0.00638817499668,0.00786236922669,0.00687957307335,0.00687957307335,0.00638817499668,0.00737097115002,0.00687957307335,0.00737097115002,0.00786236922669,0.00786236922669,0.00835376730335,0.00737097115002,0.00687957307335,0.00687957307335,0.00786236922669,0.00737097115002,0.00786236922669,0.00835376730335,0.00737097115002,0.00687957307335,0.00687957307335,0.00786236922669,0.00835376730335,0.00884516538002,0.00687957307335,0.00737097115002,0.00687957307335,0.00589677692002,0.00737097115002,0.00786236922669,0.00884516538002,0.00737097115002,0.00687957307335,0.00589677692002,0.00638817499668,0.00687957307335,0.00737097115002,0.00786236922669,0.00589677692002,0.00540537884335,0.00589677692002,0.00638817499668,0.00687957307335,0.00786236922669,0.00786236922669,0.00786236922669,0.00786236922669,0.00786236922669,0.0108107576867,0.01179355384,0.01031935961,0.01031935961,0.0108107576867,0.01031935961,0.00982796153336,0.01031935961,0.00982796153336,0.00933656345669,0.00687957307335,0.00687957307335,0.00638817499668,0.00540537884335,0.00589677692002,0.00589677692002,0.00589677692002,0.00491398076668,0.00491398076668,0.00589677692002,0.00589677692002,0.00638817499668,0.00687957307335,0.00786236922669,0.00687957307335,0.00835376730335,0.00933656345669,0.00933656345669,0.00982796153336,0.00884516538002,0.0108107576867,0.01031935961,0.00982796153336,0.00884516538002,0.01031935961,0.01031935961,0.00982796153336,0.00884516538002,0.00835376730335,0.00884516538002,0.00737097115002,0.00687957307335,0.00737097115002,0.00786236922669,0.00638817499668,0.00589677692002,0.00589677692002,0.00589677692002,0.00638817499668,0.00638817499668,0.00638817499668,0.00638817499668,0.00687957307335,0.00786236922669,0.00933656345669,0.00884516538002,0.00884516538002,0.00933656345669,0.01031935961,0.00982796153336,0.00933656345669,0.00933656345669,0.00884516538002,0.00933656345669,0.00786236922669,0.00884516538002,0.00933656345669,0.00933656345669,0.00835376730335,0.00884516538002,0.00884516538002,0.0108107576867,0.01179355384,0.00982796153336,0.00982796153336,0.00786236922669,0.00737097115002,0.00835376730335,0.00884516538002,0.00884516538002,0.00884516538002,0.00638817499668,0.00638817499668,0.00687957307335,0.00687957307335,0.00786236922669,0.00737097115002,0.00638817499668,0.00589677692002,0.00589677692002,0.00589677692002,0.00589677692002,0.00540537884335,0.00589677692002,0.00737097115002,0.00786236922669,0.00835376730335,0.00835376730335,0.00737097115002,0.00687957307335,0.00737097115002,0.00835376730335,0.00982796153336,0.00982796153336,0.00786236922669,0.00687957307335,0.00835376730335,0.00933656345669,0.00982796153336,0.01031935961,0.01031935961,0.0108107576867,0.00933656345669,0.00933656345669,0.00982796153336,0.01031935961,0.00835376730335,0.00737097115002,0.00933656345669,0.0108107576867,0.0108107576867,0.00982796153336,0.01031935961,0.01031935961,0.01031935961,0.00933656345669,0.00933656345669,0.01031935961,0.00835376730335,0.00687957307335,0.00638817499668,0.00638817499668,0.00589677692002,0.00737097115002,0.00737097115002,0.00982796153336,0.00982796153336,0.00933656345669,0.0122849519167,0.0127763499934,0.01326774807,0.0142505442234,0.0137591461467,0.0127763499934,0.01326774807,0.0113021557634,0.0127763499934,0.0122849519167,0.00933656345669,0.00933656345669,0.00884516538002,0.00835376730335,0.00933656345669,0.00884516538002,0.00933656345669,0.01031935961,0.00933656345669,0.00933656345669,0.00982796153336,0.01179355384,0.0122849519167,0.01179355384,0.0127763499934,0.01326774807,0.01179355384,0.01179355384,0.01179355384,0.0113021557634,0.01179355384,0.00982796153336,0.00884516538002,0.00982796153336,0.00737097115002,0.00638817499668,0.00638817499668,0.00589677692002,0.00589677692002,0.00786236922669,0.00786236922669,0.00835376730335,0.00835376730335,0.00737097115002,0.00737097115002,0.00737097115002,0.00884516538002,0.00933656345669,0.00933656345669,0.00786236922669,0.00737097115002,0.00687957307335,0.00687957307335,0.00687957307335,0.00884516538002,0.00884516538002,0.00737097115002,0.00589677692002,0.00638817499668,0.00687957307335,0.00884516538002,0.019164524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m <- 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altd  <- c(295)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('LUC-BG4-vs-LUC-IgG.2x25mers.MACS-2.1.0.p1e-1_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 295',bty='n')
dev.off()