/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.bam -n 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.bam -n 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.bam -n 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.bam -n DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.bam -n H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.maxFL120bp.bam -n H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.maxFL120bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_CTCF_auto-GSM3677740.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_CTCF_hiCa-GSM3677741.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_EOMES-GSM3677742.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_FoxA1_auto-GSM3677743.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_FoxA1_hiCa-GSM3677744.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_FoxA1_std-GSM3677745.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_FoxA2_auto-GSM3677746.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_FoxA2_hiCa-GSM3677747.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_GATA4-GSM3677748.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_H3K27ac-GSM3677749.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_H3K27me3-GSM3677750.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_H3K4me2-GSM3677751.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_Nanog-GSM3677755.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_POU5F1_hiCa-GSM3677756.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_POU5F1_std-GSM3677757.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_Sox17-GSM3677758.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_Sox2-GSM3677759.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 2d_IgG_std-GSM3677754.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 2d_T-GSM3677760.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_CTCF_auto-GSM3677762.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_CTCF_hiCa-GSM3677763.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_EOMES-GSM3677764.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_FoxA1_auto-GSM3677765.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_FoxA1_hiCa-GSM3677766.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_FoxA1_std-GSM3677767.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_FoxA2_auto-GSM3677768.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_FoxA2_hiCa-GSM3677769.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_GATA4-GSM3677770.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_H3K27ac-GSM3677771.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_H3K27me3-GSM3677772.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_H3K4me2-GSM3677773.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_Nanog-GSM3677777.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_POU5F1_hiCa-GSM3677778.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_POU5F1_std-GSM3677779.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_Sox17-GSM3677780.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_Sox2-GSM3677781.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 3d_IgG_std-GSM3677776.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 3d_T-GSM3677782.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_CTCF_auto-GSM3677784.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_CTCF_hiCa-GSM3677785.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_EOMES-GSM3677786.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_FoxA1_auto-GSM3677787.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_FoxA1_hiCa-GSM3677788.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_FoxA1_std-GSM3677789.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_FoxA2_auto-GSM3677790.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_FoxA2_hiCa-GSM3677791.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_GATA4-GSM3677792.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_H3K27ac-GSM3677793.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_H3K27me3-GSM3677794.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_H3K4me2-GSM3677795.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_Nanog-GSM3677799.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_POU5F1_hiCa-GSM3677800.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_POU5F1_std-GSM3677801.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_Sox17-GSM3677802.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_Sox2-GSM3677803.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c 4d_IgG_std-GSM3677798.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n 4d_T-GSM3677804.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_CTCF_auto-GSM3677806.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_CTCF_hiCa-GSM3677807.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_EOMES-GSM3677808.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_FoxA1_auto-GSM3677809.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_FoxA1_hiCa-GSM3677810.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_FoxA2_auto-GSM3677811.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_FoxA2_hiCa-GSM3677812.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_GATA4-GSM3677813.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_H3K27ac-GSM3677814.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_H3K27me3-GSM3677815.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_H3K4me2-GSM3677816.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_Nanog-GSM3677819.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_POU5F1-GSM3677820.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_Sox17-GSM3677821.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c DE_IgG_A_auto-GSM3677817.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n DE_Sox2-GSM3677822.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_CTCF-GSM3677824.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_EOMES-GSM3677825.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_FoxA1_auto-GSM3677826.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_FoxA1_std-GSM3677827.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_FoxA2_auto-GSM3677828.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_FoxA2_hiCa-GSM3677829.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_GATA4-GSM3677830.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_H3.3-GSM3677831.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_H3K27ac-GSM3677832.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_H3K27me3-GSM3677833.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_H3K4me2-GSM3677834.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_Nanog-GSM3677838.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_POU5F1_hiCa-GSM3677839.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_POU5F1_std-GSM3677840.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_SUZ12-GSM3677844.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_Sox17-GSM3677841.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_Sox2_auto-GSM3677842.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_Sox2_std-GSM3677843.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.minFL150bp.bam -c H1_IgG_std-GSM3677837.2x25mers.hg38-no_haps.unique.minFL150bp.bam -n H1_T-GSM3677845.2x25mers.hg38-no_haps.unique.minFL150bp.MACS2 -g hs -f BAMPE --nomodel &