INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/female.mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_3h_Rep2-GSM1689015/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_3h_Rep2-GSM1689015/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.3282752037 s Creating peak regions... Creating peak regions took 28.4766860008 s Estimating background... Estimating background took 0.582545995712 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.44680714607 s Creating peak regions... Creating peak regions took 28.8081159592 s Estimating background... Estimating background took 0.455924034119 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.527780056 s Creating peak regions... Creating peak regions took 28.5508580208 s Estimating background... Estimating background took 0.355334043503 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.51054596901 s Creating peak regions... Creating peak regions took 26.4299509525 s Estimating background... Estimating background took 0.322731018066 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.64632606506 s Creating peak regions... Creating peak regions took 26.7040920258 s Estimating background... Estimating background took 0.451581001282 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.3667640686 s Creating peak regions... Creating peak regions took 22.4149429798 s Estimating background... Estimating background took 0.331387996674 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.10169100761 s Creating peak regions... Creating peak regions took 20.8287639618 s Estimating background... Estimating background took 0.331202030182 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.1172709465 s Creating peak regions... Creating peak regions took 20.056388855 s Estimating background... Estimating background took 0.321749925613 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.08643198013 s Creating peak regions... Creating peak regions took 18.6815719604 s Estimating background... Estimating background took 0.34185218811 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.805891990662 s Creating peak regions... Creating peak regions took 13.0446801186 s Estimating background... Estimating background took 0.331282138824 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 3.18292403221 s Creating peak regions... Creating peak regions took 41.6043109894 s Estimating background... Estimating background took 0.735878944397 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.114882946014 s Creating peak regions... Creating peak regions took 0.186940908432 s Estimating background... Estimating background took 0.297595977783 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0576689243317 s Creating peak regions... Creating peak regions took 0.259625911713 s Estimating background... Estimating background took 0.260047912598 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0505309104919 s Creating peak regions... Creating peak regions took 0.173682928085 s Estimating background... Estimating background took 0.309747934341 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0404770374298 s Creating peak regions... Creating peak regions took 0.218480110168 s Estimating background... Estimating background took 0.285664081573 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 3.04347801208 s Creating peak regions... Creating peak regions took 42.712485075 s Estimating background... Estimating background took 3.97303986549 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.7118678093 s Creating peak regions... Creating peak regions took 35.2156939507 s Estimating background... Estimating background took 0.483403921127 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.78400015831 s Creating peak regions... Creating peak regions took 34.2341279984 s Estimating background... Estimating background took 0.344152927399 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0748891830444 s Creating peak regions... Creating peak regions took 0.0690529346466 s Estimating background... Estimating background took 0.266616106033 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0261149406433 s Creating peak regions... Creating peak regions took 0.00484013557434 s Estimating background... Estimating background took 0.265535831451 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.87724399567 s Creating peak regions... Creating peak regions took 32.7855238914 s Estimating background... Estimating background took 0.377218008041 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0272381305695 s Creating peak regions... Creating peak regions took 0.49684715271 s Estimating background... Estimating background took 0.245791912079 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 2.07718014717 s Creating peak regions... Creating peak regions took 31.2696349621 s Estimating background... Estimating background took 0.468549013138 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 2.17030882835 s Creating peak regions... Creating peak regions took 31.2846641541 s Estimating background... Estimating background took 0.473357915878 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.47256684303 s Creating peak regions... Creating peak regions took 28.2776229382 s Estimating background... Estimating background took 0.379140138626 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.90946388245 s Creating peak regions... Creating peak regions took 26.8185579777 s Estimating background... Estimating background took 0.470940113068 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.108402967453 s Creating peak regions... Creating peak regions took 0.0529661178589 s Estimating background... Estimating background took 0.232701063156 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0564668178558 s Creating peak regions... Creating peak regions took 0.0613298416138 s Estimating background... Estimating background took 0.267688035965 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0400230884552 s Creating peak regions... Creating peak regions took 0.0460729598999 s Estimating background... Estimating background took 0.295540809631 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0561120510101 s Creating peak regions... Creating peak regions took 0.0810780525208 s Estimating background... Estimating background took 0.245148181915 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0871589183807 s Creating peak regions... Creating peak regions took 0.0859830379486 s Estimating background... Estimating background took 0.273368835449 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0565950870514 s Creating peak regions... Creating peak regions took 0.0301570892334 s Estimating background... Estimating background took 0.278909921646 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0561051368713 s Creating peak regions... Creating peak regions took 0.0472071170807 s Estimating background... Estimating background took 0.285014867783 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0392770767212 s Creating peak regions... Creating peak regions took 0.0356318950653 s Estimating background... Estimating background took 0.271915912628 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0572168827057 s Creating peak regions... Creating peak regions took 0.113313913345 s Estimating background... Estimating background took 0.266053915024 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0563979148865 s Creating peak regions... Creating peak regions took 0.0405230522156 s Estimating background... Estimating background took 0.280131101608 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0561289787292 s Creating peak regions... Creating peak regions took 0.041494846344 s Estimating background... Estimating background took 0.27641916275 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0625500679016 s Creating peak regions... Creating peak regions took 0.119378089905 s Estimating background... Estimating background took 0.271763086319 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0552761554718 s Creating peak regions... Creating peak regions took 0.0618879795074 s Estimating background... Estimating background took 0.271811008453 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0547380447388 s Creating peak regions... Creating peak regions took 0.043710231781 s Estimating background... Estimating background took 0.262830018997 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.157892942429 s Creating peak regions... Creating peak regions took 0.0335309505463 s Estimating background... Estimating background took 0.236804008484 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0593118667603 s Creating peak regions... Creating peak regions took 0.0540108680725 s Estimating background... Estimating background took 0.245431900024 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0577030181885 s Creating peak regions... Creating peak regions took 0.0533390045166 s Estimating background... Estimating background took 0.26093506813 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0619280338287 s Creating peak regions... Creating peak regions took 0.107488155365 s Estimating background... Estimating background took 0.262194156647 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.057165145874 s Creating peak regions... Creating peak regions took 0.0444419384003 s Estimating background... Estimating background took 0.271658182144 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0405471324921 s Creating peak regions... Creating peak regions took 0.0403270721436 s Estimating background... Estimating background took 0.261250972748 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0534749031067 s Creating peak regions... Creating peak regions took 0.190783023834 s Estimating background... Estimating background took 0.269572973251 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 1.11215615273 s Creating peak regions... Creating peak regions took 41.0429620743 s Estimating background... Estimating background took 0.25181889534 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0920460224152 s Creating peak regions... Creating peak regions took 0.402970075607 s Estimating background... Estimating background took 0.279078006744 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Reading data took 0.0650179386139 s Creating peak regions... Creating peak regions took 19.3866689205 s Estimating background... Estimating background took 0.27658200264 s Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam Reading in data...