INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/female.mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_0h_Rep2-GSM1689012/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_0h_Rep2-GSM1689012/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.8170478344 s Creating peak regions... Creating peak regions took 34.0745401382 s Estimating background... Estimating background took 4.14576411247 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.95367097855 s Creating peak regions... Creating peak regions took 33.0173881054 s Estimating background... Estimating background took 4.71197390556 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.44999504089 s Creating peak regions... Creating peak regions took 36.1430029869 s Estimating background... Estimating background took 4.23074698448 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.37068796158 s Creating peak regions... Creating peak regions took 32.293943882 s Estimating background... Estimating background took 5.36907482147 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.47902202606 s Creating peak regions... Creating peak regions took 40.3829238415 s Estimating background... Estimating background took 4.28271389008 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.32504796982 s Creating peak regions... Creating peak regions took 28.06229496 s Estimating background... Estimating background took 3.58741998672 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.21759700775 s Creating peak regions... Creating peak regions took 26.0267760754 s Estimating background... Estimating background took 3.31492614746 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.01571893692 s Creating peak regions... Creating peak regions took 23.4898118973 s Estimating background... Estimating background took 3.62976789474 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.15217494965 s Creating peak regions... Creating peak regions took 23.8135659695 s Estimating background... Estimating background took 3.36163520813 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.995222091675 s Creating peak regions... Creating peak regions took 17.3011939526 s Estimating background... Estimating background took 2.66888785362 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 2.84428501129 s Creating peak regions... Creating peak regions took 53.8193280697 s Estimating background... Estimating background took 8.88094496727 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.076189994812 s Creating peak regions... Creating peak regions took 0.220319986343 s Estimating background... Estimating background took 0.301955938339 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0701050758362 s Creating peak regions... Creating peak regions took 0.238890886307 s Estimating background... Estimating background took 0.301204919815 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.070011138916 s Creating peak regions... Creating peak regions took 0.193096160889 s Estimating background... Estimating background took 0.304036855698 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.04678606987 s Creating peak regions... Creating peak regions took 0.214807033539 s Estimating background... Estimating background took 0.300855875015 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 2.9417951107 s Creating peak regions... Creating peak regions took 53.276843071 s Estimating background... Estimating background took 6.79662895203 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.99226999283 s Creating peak regions... Creating peak regions took 43.1769061089 s Estimating background... Estimating background took 5.60431790352 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.63533616066 s Creating peak regions... Creating peak regions took 48.4522721767 s Estimating background... Estimating background took 6.22126102448 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0677819252014 s Creating peak regions... Creating peak regions took 0.160025835037 s Estimating background... Estimating background took 0.361228942871 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0382058620453 s Creating peak regions... Creating peak regions took 0.0197851657867 s Estimating background... Estimating background took 0.367184877396 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 2.12461590767 s Creating peak regions... Creating peak regions took 46.7957370281 s Estimating background... Estimating background took 6.12957191467 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0650210380554 s Creating peak regions... Creating peak regions took 0.245327949524 s Estimating background... Estimating background took 0.378818035126 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0384411811829 s Creating peak regions... Creating peak regions took 0.540729999542 s Estimating background... Estimating background took 0.362424135208 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 2.10338711739 s Creating peak regions... Creating peak regions took 46.8416678905 s Estimating background... Estimating background took 5.84615421295 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 2.3924241066 s Creating peak regions... Creating peak regions took 44.0082280636 s Estimating background... Estimating background took 6.40307688713 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.55135202408 s Creating peak regions... Creating peak regions took 42.2528910637 s Estimating background... Estimating background took 5.80139303207 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 1.8754119873 s Creating peak regions... Creating peak regions took 37.6796591282 s Estimating background... Estimating background took 5.13490986824 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0795340538025 s Creating peak regions... Creating peak regions took 0.115313053131 s Estimating background... Estimating background took 0.305109024048 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0546100139618 s Creating peak regions... Creating peak regions took 0.0820181369781 s Estimating background... Estimating background took 0.331495046616 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0755939483643 s Creating peak regions... Creating peak regions took 0.0433201789856 s Estimating background... Estimating background took 0.329753160477 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.051451921463 s Creating peak regions... Creating peak regions took 0.0473649501801 s Estimating background... Estimating background took 0.336649179459 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0755770206451 s Creating peak regions... Creating peak regions took 0.0856380462646 s Estimating background... Estimating background took 0.351572990417 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0748081207275 s Creating peak regions... Creating peak regions took 0.0793080329895 s Estimating background... Estimating background took 0.342175960541 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0725200176239 s Creating peak regions... Creating peak regions took 0.0354099273682 s Estimating background... Estimating background took 0.340366125107 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0616059303284 s Creating peak regions... Creating peak regions took 0.0484359264374 s Estimating background... Estimating background took 0.354149103165 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0703070163727 s Creating peak regions... Creating peak regions took 0.0434670448303 s Estimating background... Estimating background took 0.338601112366 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0757532119751 s Creating peak regions... Creating peak regions took 0.0526330471039 s Estimating background... Estimating background took 0.338303089142 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0733959674835 s Creating peak regions... Creating peak regions took 0.117499113083 s Estimating background... Estimating background took 0.340178012848 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0979599952698 s Creating peak regions... Creating peak regions took 0.0503849983215 s Estimating background... Estimating background took 0.34205698967 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0744738578796 s Creating peak regions... Creating peak regions took 0.0294258594513 s Estimating background... Estimating background took 0.351593017578 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0829138755798 s Creating peak regions... Creating peak regions took 0.102195978165 s Estimating background... Estimating background took 0.335462808609 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.07173204422 s Creating peak regions... Creating peak regions took 0.0460970401764 s Estimating background... Estimating background took 0.350165128708 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0783128738403 s Creating peak regions... Creating peak regions took 0.0483658313751 s Estimating background... Estimating background took 0.346973896027 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.286082029343 s Creating peak regions... Creating peak regions took 0.0791199207306 s Estimating background... Estimating background took 0.316992044449 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0582389831543 s Creating peak regions... Creating peak regions took 0.0661480426788 s Estimating background... Estimating background took 0.335867881775 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.100255966187 s Creating peak regions... Creating peak regions took 0.0662968158722 s Estimating background... Estimating background took 0.346174001694 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0817708969116 s Creating peak regions... Creating peak regions took 0.139456987381 s Estimating background... Estimating background took 0.35595202446 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0547070503235 s Creating peak regions... Creating peak regions took 0.0436079502106 s Estimating background... Estimating background took 0.339366912842 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0583169460297 s Creating peak regions... Creating peak regions took 0.0545380115509 s Estimating background... Estimating background took 0.343376159668 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.114245891571 s Creating peak regions... Creating peak regions took 0.196491956711 s Estimating background... Estimating background took 0.423064947128 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.941937208176 s Creating peak regions... Creating peak regions took 50.9310719967 s Estimating background... Estimating background took 0.685401201248 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.144949913025 s Creating peak regions... Creating peak regions took 0.528173923492 s Estimating background... Estimating background took 0.332251787186 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Reading data took 0.0461981296539 s Creating peak regions... Creating peak regions took 22.2601640224 s Estimating background... Estimating background took 0.329188108444 s Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam Reading in data...