python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-14_neuron_rep1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-14_neuron_rep1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-14_neuron_rep2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-14_neuron_rep2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-21_neuron_rep1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-21_neuron_rep1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-21_neuron_rep2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-21_neuron_rep2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-28_neuron_rep1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-28_neuron_rep1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Quant-seq_Day-28_neuron_rep2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.bam  SAMstats-Quant-seq_Day-28_neuron_rep2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes  samtools -paired