Martian Runtime - v4.0.13
2025-03-12 08:57:59 [build  ] Built with Go version go1.23.2 X:nocoverageredesign
2025-03-12 08:57:59 [cmdline] mrp __cellranger-aggr-Aiptasia.mro cellranger-aggr-Aiptasia
2025-03-12 08:57:59 [pid    ] 30975
2025-03-12 08:57:59 [environ] SLURM_JOB_START_TIME=1741794902
2025-03-12 08:57:59 [environ] SLURM_NODELIST=sh02-05n39
2025-03-12 08:57:59 [environ] SLURM_JOB_NAME=sdev
2025-03-12 08:57:59 [environ] SLURM_TOPOLOGY_ADDR=sh02.sh02-isw-05n02.sh02-05n39
2025-03-12 08:57:59 [environ] HOSTNAME=sh02-05n39.int
2025-03-12 08:57:59 [environ] SLURM_PRIO_PROCESS=0
2025-03-12 08:57:59 [environ] SLURM_SRUN_COMM_PORT=36280
2025-03-12 08:57:59 [environ] SHELL=/bin/bash
2025-03-12 08:57:59 [environ] TERM=xterm
2025-03-12 08:57:59 [environ] SLURM_PTY_WIN_ROW=56
2025-03-12 08:57:59 [environ] SLURM_MPI_TYPE=pmix
2025-03-12 08:57:59 [environ] SLURM_JOB_QOS=normal
2025-03-12 08:57:59 [environ] SLURM_TOPOLOGY_ADDR_PATTERN=switch.switch.node
2025-03-12 08:57:59 [environ] SSH_CLIENT=10.130.71.191 59825 22
2025-03-12 08:57:59 [environ] TMPDIR=/tmp
2025-03-12 08:57:59 [environ] CONDA_SHLVL=1
2025-03-12 08:57:59 [environ] LIBRARY_PATH=/share/software/user/open/java/1.8.0_131/jre/lib/amd64:/share/software/user/open/java/1.8.0_131/lib/amd64:/share/software/user/open/R/3.6.1/lib64/R/lib:/share/software/user/open/gsl/2.3/lib:/share/software/user/open/texinfo/6.6/lib:/share/software/user/open/perl/5.26.0/lib:/share/software/user/open/libtiff/4.0.8/lib:/share/software/user/open/pango/1.40.10/lib:/share/software/user/open/harfbuzz/1.4.8/lib:/share/software/user/open/icu/59.1/lib:/share/software/user/open/cairo/1.14.10/lib:/share/software/user/open/gobject-introspection/1.52.1/lib:/share/software/user/open/glib/2.52.3/lib:/share/software/user/open/libffi/3.2.1/lib64:/share/software/user/open/fontconfig/2.12.4/lib:/share/software/user/open/x11/7.7/lib:/share/software/user/open/libxkbcommon/0.9.1/lib64:/share/software/user/open/llvm/4.0.0/lib:/share/software/user/open/libxml2/2.9.4/lib:/share/software/user/open/freetype/2.8.1/lib:/share/software/user/open/libpng/1.2.57/lib:/share/software/user/open/curl/8.4.0/lib:/share/software/user/open/openssl/3.0.7/lib64:/share/software/user/open/xz/5.2.3/lib:/share/software/user/open/pcre/8.40/lib:/share/software/user/open/libjpeg-turbo/1.5.1/lib:/share/software/user/open/openblas/0.2.19/lib:/share/software/user/open/python/2.7.13/lib:/share/software/user/open/sqlite/3.18.0/lib:/share/software/user/open/tcltk/8.6.6/lib:/share/software/user/open/libressl/2.5.3/lib:/share/software/user/open/zlib/1.2.11/lib
2025-03-12 08:57:59 [environ] CONDA_PROMPT_MODIFIER=(base) 
2025-03-12 08:57:59 [environ] SLURM_JOB_END_TIME=1741967705
2025-03-12 08:57:59 [environ] SSH_TTY=/dev/pts/7
2025-03-12 08:57:59 [environ] USER=marinovg
2025-03-12 08:57:59 [environ] SLURM_NNODES=1
2025-03-12 08:57:59 [environ] LS_COLORS=su=00:sg=00:ca=00:or=40;31;01
2025-03-12 08:57:59 [environ] SLURM_TRES_PER_TASK=cpu=8
2025-03-12 08:57:59 [environ] PYTHONPYCACHEPREFIX=/tmp
2025-03-12 08:57:59 [environ] CONDA_EXE=/oak/stanford/groups/akundaje/marinovg/programs/Anaconda2/bin/conda
2025-03-12 08:57:59 [environ] SLURM_STEP_NUM_NODES=1
2025-03-12 08:57:59 [environ] SLURM_JOBID=61258961
2025-03-12 08:57:59 [environ] SLURM_LAUNCH_NODE_IPADDR=10.20.0.61
2025-03-12 08:57:59 [environ] SLURM_STEP_ID=4294967290
2025-03-12 08:57:59 [environ] SLURM_STEP_LAUNCHER_PORT=36280
2025-03-12 08:57:59 [environ] PATH=/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/lib/bin:/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/external/martian/bin:/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/external/anaconda/bin:/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/bin/tenkit:/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/bin:/oak/stanford/groups/akundaje/marinovg/programs/Anaconda2/bin:/oak/stanford/groups/akundaje/marinovg/programs/Anaconda2/condabin:/share/software/user/srcc/bin:/share/software/user/open/java/1.8.0_131/bin:/share/software/user/open/R/3.6.1/bin:/share/software/user/open/gsl/2.3/bin:/share/software/user/open/texinfo/6.6/bin:/share/software/user/open/texlive/2019/bin/x86_64-linux:/home/users/marinovg/perl5/bin:/share/software/user/open/perl/5.26.0/bin:/share/software/user/open/libtiff/4.0.8/bin:/share/software/user/open/pango/1.40.10/bin:/share/software/user/open/harfbuzz/1.4.8/bin:/share/software/user/open/icu/59.1/bin:/share/software/user/open/cairo/1.14.10/bin:/share/software/user/open/gobject-introspection/1.52.1/bin:/share/software/user/open/glib/2.52.3/bin:/share/software/user/open/fontconfig/2.12.4/bin:/share/software/user/open/x11/7.7/bin:/share/software/user/open/llvm/4.0.0/bin:/share/software/user/open/libxml2/2.9.4/bin:/share/software/user/open/freetype/2.8.1/bin:/share/software/user/open/libpng/1.2.57/bin:/share/software/user/open/curl/8.4.0/bin:/share/software/user/open/openssl/3.0.7/bin:/share/software/user/open/xz/5.2.3/bin:/share/software/user/open/pcre/8.40/bin:/share/software/user/open/libjpeg-turbo/1.5.1/bin:/share/software/user/open/py-numpy/1.14.3_py27/bin:/share/software/user/open/python/2.7.13/bin:/share/software/user/open/sqlite/3.18.0/bin:/share/software/user/open/tcltk/8.6.6/bin:/share/software/user/open/libressl/2.5.3/bin:/share/software/user/srcc/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/users/marinovg/anaconda2-V2:/oak/stanford/groups/akundaje/marinovg/programs/htslib-1.10.2:/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19
2025-03-12 08:57:59 [environ] SLURM_TASKS_PER_NODE=1
2025-03-12 08:57:59 [environ] SLURM_CONF=/var/spool/slurmd/conf-cache/slurm.conf
2025-03-12 08:57:59 [environ] MKL_NUM_THREADS=8
2025-03-12 08:57:59 [environ] SLURM_OOM_KILL_STEP=0
2025-03-12 08:57:59 [environ] SLURM_JOB_ID=61258961
2025-03-12 08:57:59 [environ] SLURM_CPUS_PER_TASK=8
2025-03-12 08:57:59 [environ] CONDA_PREFIX=/oak/stanford/groups/akundaje/marinovg/programs/Anaconda2
2025-03-12 08:57:59 [environ] SLURM_PMIX_MAPPING_SERV=(vector,(0,1,1))
2025-03-12 08:57:59 [environ] SLURM_JOB_USER=marinovg
2025-03-12 08:57:59 [environ] SLURM_STEPID=4294967290
2025-03-12 08:57:59 [environ] PWD=/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq
2025-03-12 08:57:59 [environ] JAVA_HOME=/share/software/user/open/java/1.8.0_131
2025-03-12 08:57:59 [environ] SLURM_SRUN_COMM_HOST=10.20.0.61
2025-03-12 08:57:59 [environ] LANG=C
2025-03-12 08:57:59 [environ] SLURM_PTY_WIN_COL=227
2025-03-12 08:57:59 [environ] SLURM_JOB_UID=312359
2025-03-12 08:57:59 [environ] SLURM_NODEID=0
2025-03-12 08:57:59 [environ] SLURM_PMIXP_ABORT_AGENT_PORT=42662
2025-03-12 08:57:59 [environ] SLURM_SUBMIT_DIR=/home/users/marinovg
2025-03-12 08:57:59 [environ] SLURM_TASK_PID=30446
2025-03-12 08:57:59 [environ] SLURM_CPUS_ON_NODE=8
2025-03-12 08:57:59 [environ] SLURM_PROCID=0
2025-03-12 08:57:59 [environ] SLURM_JOB_NODELIST=sh02-05n39
2025-03-12 08:57:59 [environ] SLURM_PTY_PORT=42337
2025-03-12 08:57:59 [environ] HOME=/home/users/marinovg
2025-03-12 08:57:59 [environ] SHLVL=4
2025-03-12 08:57:59 [environ] SLURM_LOCALID=0
2025-03-12 08:57:59 [environ] SLURM_JOB_GID=48931
2025-03-12 08:57:59 [environ] SLURM_JOB_CPUS_PER_NODE=8
2025-03-12 08:57:59 [environ] SLURM_CLUSTER_NAME=sherlock
2025-03-12 08:57:59 [environ] SLURM_GTIDS=0
2025-03-12 08:57:59 [environ] SLURM_SUBMIT_HOST=sh04-ln01.stanford.edu
2025-03-12 08:57:59 [environ] BASH_ENV=/share/software/user/open/lmod/lmod/init/bash
2025-03-12 08:57:59 [environ] SLURM_JOB_PARTITION=sfgf
2025-03-12 08:57:59 [environ] CONDA_PYTHON_EXE=/oak/stanford/groups/akundaje/marinovg/programs/Anaconda2/bin/python
2025-03-12 08:57:59 [environ] LOGNAME=marinovg
2025-03-12 08:57:59 [environ] SLURM_STEP_NUM_TASKS=1
2025-03-12 08:57:59 [environ] SSH_CONNECTION=10.130.71.191 59825 171.67.99.167 22
2025-03-12 08:57:59 [environ] SLURM_JOB_ACCOUNT=akundaje
2025-03-12 08:57:59 [environ] SLURM_JOB_NUM_NODES=1
2025-03-12 08:57:59 [environ] CONDA_DEFAULT_ENV=base
2025-03-12 08:57:59 [environ] OMP_NUM_THREADS=8
2025-03-12 08:57:59 [environ] SLURM_STEP_TASKS_PER_NODE=1
2025-03-12 08:57:59 [environ] SLURM_SCRIPT_CONTEXT=prolog_task
2025-03-12 08:57:59 [environ] SLURM_STEP_NODELIST=sh02-05n39
2025-03-12 08:57:59 [environ] XDG_RUNTIME_DIR=/tmp
2025-03-12 08:57:59 [environ] SLURM_MEM_PER_NODE=65536
2025-03-12 08:57:59 [environ] BASH_FUNC__cache_cmd()=() {  local cache=$HOME/.cache/sh/;
 local cmd=${1:-};
 local cachelife=${2:-};
 local entry exp;
 shift 2;
 [[ -d ${cache} ]] || /bin/mkdir -p "${cache}";
 read -r prm_hash dash <<< "$(/bin/md5sum <<< "$@")";
 entry="${cache}/${cmd##*/}_${prm_hash}";
 exp=$(/bin/date -d -"${cachelife}"sec +%s);
 if [[ -s ${entry} ]] && [[ $(/bin/date -r "${entry}" +%s) -gt $exp ]]; then
 cat "${entry}";
 else
 ${cmd} "$@" 2>&1 | tee "${entry}" 2> /dev/null || rm "${entry}" 2> /dev/null;
 fi;
 set +m;
 $SH_TIMEOUT_CMD 5 find "${cache}" -type f -name "${cmd##*/}_*" \! -newermt @"$exp" -delete &>/dev/null;
 set -m
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_quota()=() {  _cache_cmd $SRCC_PATH/sh_quota 180 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sstat()=() {  _cache_cmd /usr/bin/sstat 10 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_usage()=() {  _cache_cmd $SRCC_PATH/sh_usage 90 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_jobwait()=() {  _cache_cmd $SRCC_PATH/sh_jobwait 300 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_squeue()=() {  _cache_cmd /usr/bin/squeue 20 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_module()=() {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_part()=() {  _cache_cmd $SRCC_PATH/sh_part 30 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_next_downtime()=() {  _cache_cmd $SRCC_PATH/sh_next_downtime 3600 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sudo()=() {  $SRCC_PATH/sudo
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sleep()=() {  timeout $TMOUT sleep "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_bc()=() {  timeout $TMOUT bc "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sinfo()=() {  _cache_cmd /usr/bin/sinfo 60 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sacct()=() {  _cache_cmd /usr/bin/sacct 60 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_jobs()=() {  _cache_cmd $SRCC_PATH/sh_jobs 90 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_sh_status()=() {  _cache_cmd $SRCC_PATH/sh_status 3600 "$@"
}
2025-03-12 08:57:59 [environ] BASH_FUNC_ml()=() {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
2025-03-12 08:57:59 [environ] _=/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/cellranger
2025-03-12 08:57:59 [environ] HDF5_USE_FILE_LOCKING=FALSE
2025-03-12 08:57:59 [environ] LC_CTYPE=en_US.UTF-8
2025-03-12 08:57:59 [environ] MKL_CBWR=COMPATIBLE
2025-03-12 08:57:59 [environ] PYTHONNOUSERSITE=1
2025-03-12 08:57:59 [environ] RUST_BACKTRACE=1
2025-03-12 08:57:59 [environ] PYTHONPATH=/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/lib/python:/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/external/martian/adapters/python
2025-03-12 08:57:59 [environ] TENX_PRODUCT=cellranger
2025-03-12 08:57:59 [environ] TENX_VERSION=cellranger-9.0.1
2025-03-12 08:57:59 [environ] TENX_COPYRIGHT=Copyright 2023 10x Genomics, Inc. All rights reserved.
2025-03-12 08:57:59 [environ] MROPATH=/oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/mro
2025-03-12 08:57:59 [version] MRO Version=cellranger-9.0.1
2025-03-12 08:57:59 [options] --jobmode=local
2025-03-12 08:57:59 [options] --vdrmode=rolling
2025-03-12 08:57:59 [options] --profile=disable
2025-03-12 08:57:59 [options] --stackvars=false
2025-03-12 08:57:59 [options] --zip=false
2025-03-12 08:57:59 [options] --limit-loadavg=false
2025-03-12 08:57:59 [options] --noexit=false
2025-03-12 08:57:59 [options] --nopreflight=false
2025-03-12 08:57:59 [jobmngr] Job config = /oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/external/martian/jobmanagers/config.json
2025-03-12 08:57:59 [jobmngr] Using 8 logical cores available on system.
2025-03-12 08:57:59 [jobmngr] Detected cgroup memory limit of 68719476736 bytes.  Using it instead of total system memory 270108504064
2025-03-12 08:57:59 [jobmngr] Using 61 GB, 96% of system memory.
2025-03-12 08:58:01 [sysinfo] linux amd64
2025-03-12 08:58:01 [sysinfo] Linux kernel release version: 3.10.0-1160.119.1.el7.tuxcare.els14.x86_64
2025-03-12 08:58:01 [sysinfo] glibc version: 2.17
2025-03-12 08:58:01 [filesys] Pipestance path /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia
2025-03-12 08:58:01 [filesys] Pipestance filesystem type lustre
2025-03-12 08:58:01 [filesys] 4.6 TB and 67,831,689 inodes available.
2025-03-12 08:58:01 [filesys] Pipestance filesystem lustre mount options: rw,nosuid,rw,checksum,flock,user_xattr,lruresize,lazystatfs,nouser_fid2path,verbose,noencrypt,statfs_project
2025-03-12 08:58:01 [filesys] Pipestance directory permissions dgrwxrwx--- owned by uid 312359 gid 1003325
2025-03-12 08:58:02 [filesys] Bin path /oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/external/martian/bin
2025-03-12 08:58:02 [filesys] Bin filesystem type lustre
2025-03-12 08:58:02 [filesys] Bin filesystem lustre mount options: rw,nosuid,rw,checksum,flock,user_xattr,lruresize,lazystatfs,nouser_fid2path,verbose,noencrypt,statfs_project
2025-03-12 08:58:02 [filesys] Executable file permissions -rwxrwx--- owned by uid 312359 gid 1003325
2025-03-12 08:58:02 [user   ] User marinovg uid 312359 / gid 48931
Serving UI at http://sh02-05n39.int:33698?auth=UOmGvHIxPC7bvFP3i9naU8Uh_vA86utFT8QNSdiY3F4

Running preflight checks (please wait)...
2025-03-12 08:58:02 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.PARSE_AGGR_CSV
2025-03-12 08:58:02 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.PARSE_AGGR_CSV.fork0.chnk0.main
2025-03-12 08:58:03 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.PARSE_AGGR_CSV
2025-03-12 08:58:04 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.AGGREGATOR_PREFLIGHT
2025-03-12 08:58:04 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.AGGREGATOR_PREFLIGHT.fork0.chnk0.main
2025-03-12 09:00:10 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.AGGREGATOR_PREFLIGHT
2025-03-12 09:00:10 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION
2025-03-12 09:00:10 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.split
2025-03-12 09:00:12 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION
2025-03-12 09:00:12 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.chnk0.main
2025-03-12 09:00:12 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.chnk1.main
2025-03-12 09:00:12 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.chnk2.main
2025-03-12 09:00:12 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.chnk3.main
2025-03-12 09:00:12 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.chnk4.main
2025-03-12 09:00:14 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION
2025-03-12 09:00:14 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION.fork0.join
2025-03-12 09:00:18 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_MOLECULE_INFO_VERSION
2025-03-12 09:00:18 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SETUP_SAMPLES
2025-03-12 09:00:18 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SETUP_SAMPLES.fork0.chnk0.main
2025-03-12 09:00:18 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR._ANTIGEN_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:00:18 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR._ANTIGEN_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:00:19 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SETUP_SAMPLES
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.PROCESS_VDJ_PROTO
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.SETUP_VDJ_AGGR
2025-03-12 09:00:19 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES
2025-03-12 09:00:19 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.split
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.RUN_ENCLONE_AGGR
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_CLONOTYPE_OUTS
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_CONSENSUS_TXT
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_WEB_SUMMARY_JSON
2025-03-12 09:00:19 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.FILL_CLONOTYPE_INFO
2025-03-12 09:00:20 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES
2025-03-12 09:00:20 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.chnk0.main
2025-03-12 09:00:20 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.chnk1.main
2025-03-12 09:00:20 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.chnk2.main
2025-03-12 09:00:20 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.chnk3.main
2025-03-12 09:00:20 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.chnk4.main
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_ANN_CSV
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.CALCULATE_CLONOTYPE_DIVERSITY
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.SUMMARIZE_VDJ_FILTERS
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_CONCAT_REF_OUTS
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.CREATE_AIRR_TSV
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.WRITE_AGGR_ANN
2025-03-12 09:00:20 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.BUILD_AGGR_WEB_SUMMARY
2025-03-12 09:00:24 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES
2025-03-12 09:00:24 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES.fork0.join
2025-03-12 09:00:54 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.MERGE_MOLECULES
2025-03-12 09:00:55 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CRISPR_AGGR_INPUT_PREP
2025-03-12 09:00:55 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CRISPR_AGGR_INPUT_PREP
2025-03-12 09:00:55 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH
2025-03-12 09:00:55 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH.fork0.split
2025-03-12 09:00:56 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH
2025-03-12 09:00:56 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH.fork0.chnk0.main
2025-03-12 09:01:29 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH
2025-03-12 09:01:29 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH.fork0.join
2025-03-12 09:01:32 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.NORMALIZE_DEPTH
2025-03-12 09:01:32 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.WRITE_MATRICES
2025-03-12 09:01:32 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.WRITE_MATRICES.fork0.split
2025-03-12 09:01:34 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.WRITE_MATRICES
2025-03-12 09:01:34 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.WRITE_MATRICES.fork0.join
2025-03-12 09:01:50 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.WRITE_MATRICES
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR.CALCULATE_ANTIGEN_SPECIFICITY
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.VLOUPE_PREPROCESS
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR.CREATE_CLONOTYPE_CLUSTERMAP
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR.CREATE_BARCODE_CSV
2025-03-12 09:01:50 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER.CALL_PROTOSPACERS
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER.CALL_PROTOSPACERS
2025-03-12 09:01:50 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_INVARIANTS
2025-03-12 09:01:50 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.CHECK_INVARIANTS
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2025-03-12 09:01:51 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR._ANTIGEN_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR._ANTIGEN_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR.BUILD_ANTIGEN_AGGR_WEB_SUMMARY
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR._ANTIGEN_ANALYZER
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.MATCH_VDJ_AGGR_OUTS
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.MATCH_VDJ_AGGR_OUTS
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.SC_VDJ_AGGREGATOR.ANTIGEN_AGGR
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2025-03-12 09:01:51 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.COPY_VDJ_REFERENCE
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR.COPY_VDJ_REFERENCE
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR._CRISPR_ANALYZER
2025-03-12 09:01:51 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.VDJ_AGGR
2025-03-12 09:01:52 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2025-03-12 09:01:52 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2025-03-12 09:01:52 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2025-03-12 09:01:53 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2025-03-12 09:01:53 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2025-03-12 09:02:01 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIGEN_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIGEN_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.PCA_PREP
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.PCA_PREP
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIGEN_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIGEN_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2025-03-12 09:02:01 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.RUN_PCA2
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.RUN_PCA2
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIGEN_ANALYZER
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.POST_PCA
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA.POST_PCA
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER._ANTIBODY_ANALYZER
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_BATCH_CORRECTION_PCA
2025-03-12 09:02:01 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2025-03-12 09:02:01 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2025-03-12 09:02:02 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA
2025-03-12 09:02:02 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2025-03-12 09:02:02 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA
2025-03-12 09:02:02 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2025-03-12 09:02:02 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2025-03-12 09:02:02 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2025-03-12 09:02:06 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2025-03-12 09:02:16 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2025-03-12 09:02:16 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_PCA
2025-03-12 09:02:16 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2025-03-12 09:02:16 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_TSNE
2025-03-12 09:02:16 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_TSNE
2025-03-12 09:02:16 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2025-03-12 09:02:16 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2025-03-12 09:02:16 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2025-03-12 09:02:16 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2025-03-12 09:02:16 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2025-03-12 09:02:16 [jobmngr] Need 4 threads to start the next job (2 threads available).  Waiting for jobs to complete.
2025-03-12 09:02:36 [jobmngr] Need 4 threads to start the next job (3 threads available). Waiting for jobs to complete.
2025-03-12 09:02:36 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2025-03-12 09:02:36 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2025-03-12 09:03:24 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP
2025-03-12 09:03:24 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2025-03-12 09:03:29 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_UMAP
2025-03-12 09:03:31 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS
2025-03-12 09:03:31 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2025-03-12 09:03:33 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_KMEANS
2025-03-12 09:03:44 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2025-03-12 09:03:44 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2025-03-12 09:03:44 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2025-03-12 09:03:44 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_HIERARCHICAL_CLUSTERING
2025-03-12 09:03:44 [runtime] (disabled)        ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_HIERARCHICAL_CLUSTERING
2025-03-12 09:03:44 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2025-03-12 09:03:44 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2025-03-12 09:03:45 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2025-03-12 09:03:45 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2025-03-12 09:03:45 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2025-03-12 09:03:46 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2025-03-12 09:03:46 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2025-03-12 09:05:37 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2025-03-12 09:05:37 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2025-03-12 09:05:40 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2025-03-12 09:05:40 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2025-03-12 09:05:40 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2025-03-12 09:05:41 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2025-03-12 09:05:41 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2025-03-12 09:05:42 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2025-03-12 09:05:42 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
2025-03-12 09:05:42 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2025-03-12 09:05:43 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SUMMARIZE_AGGREGATED_REPORTS
2025-03-12 09:05:43 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SUMMARIZE_AGGREGATED_REPORTS.fork0.split
2025-03-12 09:06:25 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SUMMARIZE_AGGREGATED_REPORTS
2025-03-12 09:06:25 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SUMMARIZE_AGGREGATED_REPORTS.fork0.join
2025-03-12 09:06:37 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.SC_RNA_AGGREGATOR.SUMMARIZE_AGGREGATED_REPORTS
2025-03-12 09:06:37 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.CLOUPE_PREPROCESS
2025-03-12 09:06:38 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.CLOUPE_PREPROCESS.fork0.split
2025-03-12 09:06:38 [runtime] (ready)           ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.BUILD_COMBINED_WEB_SUMMARY
2025-03-12 09:06:38 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.BUILD_COMBINED_WEB_SUMMARY.fork0.chnk0.main
2025-03-12 09:06:39 [runtime] (chunks_complete) ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.BUILD_COMBINED_WEB_SUMMARY
2025-03-12 09:06:39 [runtime] (split_complete)  ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.CLOUPE_PREPROCESS
2025-03-12 09:06:39 [runtime] (run:local)       ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.CLOUPE_PREPROCESS.fork0.join
2025-03-12 09:07:02 [runtime] (join_complete)   ID.cellranger-aggr-Aiptasia.SC_RNA_AGGREGATOR_CS.COUNT_AGGR.CLOUPE_PREPROCESS
2025-03-12 09:07:03 [runtime] VDR killed 218 files, 1.4 GB.

Outputs:
- Copy of the input aggregation CSV: /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/aggregation.csv
- Aggregation metrics summary HTML:  /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/web_summary.html
- count:
    Aggregation metrics summary JSON:       /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/summary.json
    Secondary analysis output CSV:          /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/analysis
    Crispr analysis output:                 null
    Filtered feature-barcode matrices MEX:  /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/filtered_feature_bc_matrix
    Filtered feature-barcode matrices HDF5: /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/filtered_feature_bc_matrix.h5
    Loupe Browser file:                     /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/cloupe.cloupe
    Beam mode:                              null
    Antigen Specificity Controls:           {}
    feature_reference:                      /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/outs/count/feature_reference.csv
    Disable antigen aggregation:            true
- vdj_t:                             null
- vdj_t_gd:                          null
- vdj_b:                             null
- V(D)J reference:                   null
- antigen_analysis:                  null

2025-03-12 09:07:03 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2025-03-12 09:07:09 Shutting down.
2025-03-12 09:07:09 [jobmngr] Highest memory usage observed: {
  "rss": 2706485248,
  "shared": 72544256,
  "vmem": 12574195712,
  "text": 208961536,
  "stack": 12184584192,
  "proc_count": 83
}
