@include "rna/sc_rna_aggregator_cs.mro"

call SC_RNA_AGGREGATOR_CS(
    sample_id                = "cellranger-aggr-Aiptasia",
    sample_desc              = "aggr-Aiptasia",
    pipestance_root          = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq",
    aggregation_csv          = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia.csv",
    normalization_mode       = "mapped",
    no_secondary_analysis    = false,
    min_crispr_umi_threshold = 3,
    enable_tsne              = false,
)
