@include "rna/_cr_ana_stages.mro"

call RUN_UMAP(
    matrix_h5      = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u78ffd1aff0/files/preprocessed_matrix_h5.h5",
    pca_h5         = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u78ffd1affa/files/pca_h5.h5",
    random_seed    = null,
    n_neighbors    = null,
    input_pcs      = null,
    max_dims       = null,
    min_dist       = null,
    metric         = null,
    implementation = "original",
)
