@include "rna/_cr_ana_stages.mro"

call RUN_GRAPH_CLUSTERING(
    matrix_h5           = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u78ffd1aff0/files/preprocessed_matrix_h5.h5",
    pca_h5              = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u78ffd1affa/files/pca_h5.h5",
    num_neighbors       = null,
    neighbor_a          = null,
    neighbor_b          = null,
    input_pcs           = null,
    resolution          = null,
    random_seed         = null,
    threads             = 4,
    parallel_clustering = false,
)
