@include "rna/_cr_ana_stages.mro"

call RUN_DIFFERENTIAL_EXPRESSION_NG as RUN_DIFFERENTIAL_EXPRESSION(
    matrix_h5        = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u78ffd1aff0/files/preprocessed_matrix_h5.h5",
    clustering_h5    = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u78ffd1b060/files/clustering_h5.h5",
    is_antibody_only = false,
)
