[stdout]
['crconverter', 'cellranger-aggr-Aiptasia', 'SC_RNA_AGGREGATOR_CS', '--matrix', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/WRITE_MATRICES/fork0/join-u78ffd1afdc/files/filtered_matrix_h5.h5', '--analysis', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u78ffd1b0d4/files/analysis/analysis.h5', '--output', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/output_for_cloupe.cloupe', '--description', 'aggr-Aiptasia', '--metrics', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SUMMARIZE_AGGREGATED_REPORTS/fork0/join-u78ffd1b0d7/files/summary.json', '--aggregation', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia.csv', '--gemgroups', '/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/gem_group_index_json.json']
