2025-03-12 09:06:39 [time] __start__
2025-03-12 09:06:39 [monitor] cgroup memory limit of 68719476736 bytes detected
2025-03-12 09:06:40 [info] Running crconverter: crconverter cellranger-aggr-Aiptasia SC_RNA_AGGREGATOR_CS --matrix /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/WRITE_MATRICES/fork0/join-u78ffd1afdc/files/filtered_matrix_h5.h5 --analysis /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u78ffd1b0d4/files/analysis/analysis.h5 --output /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/output_for_cloupe.cloupe --description aggr-Aiptasia --metrics /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SUMMARIZE_AGGREGATED_REPORTS/fork0/join-u78ffd1b0d7/files/summary.json --aggregation /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia.csv --gemgroups /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/gem_group_index_json.json
2025-03-12 09:07:02 [info] crconverter output: b'inputs: {name:cellranger-aggr-Aiptasia description:aggr-Aiptasia pipestanceType:2 outputPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/output_for_cloupe.cloupe matrixPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/WRITE_MATRICES/fork0/join-u78ffd1afdc/files/filtered_matrix_h5.h5 analysisPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u78ffd1b0d4/files/analysis/analysis.h5 metricsPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SUMMARIZE_AGGREGATED_REPORTS/fork0/join-u78ffd1b0d7/files/summary.json aggregationPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia.csv gemGroupsPath:/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/gem_group_index_json.json contigInfoPath: peakLocationsPath: fragmentsIndexPath: geneAnnotationsPath: geneAnnotationTypes:[] spatialImagePath: spatialFiducialsPath: spatialTissuePath: spatialDZIPath: spatialTilesPaths:[] spatialScaleFactorsPath: spatialAggregationPath: spatialImageType: spatialEnrichment: spatialImagePageNames:[] spatialDeconvolutionPath: spatialProductType: analysisTitle:Default Pipeline Analysis cellsPerSample: cellsPerTag: cellsPerProtospacer:}\nConverting matrix:  /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/WRITE_MATRICES/fork0/join-u78ffd1afdc/files/filtered_matrix_h5.h5\nConverting analysis.h5:  /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/SC_RNA_AGGREGATOR/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-u78ffd1b0d4/files/analysis/analysis.h5\nConverting RunInfo\nWrote .cloupe file to /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-aggr-Aiptasia/SC_RNA_AGGREGATOR_CS/COUNT_AGGR/CLOUPE_PREPROCESS/fork0/join-u78ffd1b10d/files/output_for_cloupe.cloupe\n'
2025-03-12 09:07:02 [time] __end__
