### /oak/stanford/groups/akundaje/marinovg/programs/cellranger-9.0.1/lib/bin/STAR   --runMode genomeGenerate   --runThreadN 20   --genomeDir /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/mkref_cellranger-Symbiodinium_minutum_Clade_B1_Ver1_120123/MAKE_REFERENCE/_MAKE_REFERENCE/fork0/join-u1517cf57d6/files/reference/star   --genomeFastaFiles /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/mkref_cellranger-Symbiodinium_minutum_Clade_B1_Ver1_120123/MAKE_REFERENCE/_MAKE_REFERENCE/fork0/join-u1517cf57d6/files/reference/fasta/genome.fa      --genomeSAindexNbases 13   --genomeChrBinNbits 14   --genomeSAsparseD 1   --limitGenomeGenerateRAM 17179869184   --sjdbGTFfile /oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/mkref_cellranger-Symbiodinium_minutum_Clade_B1_Ver1_120123/MAKE_REFERENCE/_MAKE_REFERENCE/fork0/join-u1517cf57d6/files/reference/genes/genes.gtf
### GstrandBit 32
versionGenome	2.7.1a
genomeFastaFiles	/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/mkref_cellranger-Symbiodinium_minutum_Clade_B1_Ver1_120123/MAKE_REFERENCE/_MAKE_REFERENCE/fork0/join-u1517cf57d6/files/reference/fasta/genome.fa 
genomeSAindexNbases	13
genomeChrBinNbits	14
genomeSAsparseD	1
sjdbOverhang	100
sjdbFileChrStartEnd	- 
sjdbGTFfile	/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/mkref_cellranger-Symbiodinium_minutum_Clade_B1_Ver1_120123/MAKE_REFERENCE/_MAKE_REFERENCE/fork0/join-u1517cf57d6/files/reference/genes/genes.gtf
sjdbGTFchrPrefix	-
sjdbGTFfeatureExon	exon
sjdbGTFtagExonParentTranscript	transcript_id
sjdbGTFtagExonParentGene	gene_id
sjdbInsertSave	Basic
genomeFileSizes	1052494788 6299963558