@include "rna/_common_stages.mro"

call PARSE_TARGET_FEATURES(
    target_set_name      = null,
    target_set           = null,
    reference_path       = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-GCA_001417965_1_Aiptasia_genome_1_1_genomic",
    gene_index           = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-u29f8cf672c/files/gene_index.json",
    filter_probes        = null,
    no_target_umi_filter = false,
    no_bam               = false,
    is_pd                = false,
    is_antibody_only     = false,
)
