@include "rna/_cr_ana_stages.mro"

call RUN_UMAP(
    matrix_h5      = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u29f8cfd3e7/files/preprocessed_matrix_h5.h5",
    pca_h5         = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u29f8cfd3fa/files/pca_h5.h5",
    random_seed    = null,
    n_neighbors    = null,
    input_pcs      = null,
    max_dims       = null,
    min_dist       = null,
    metric         = null,
    implementation = "original",
)
