@include "rna/_cr_ana_stages.mro"

call RUN_TSNE(
    matrix_h5       = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u29f8cfd3e7/files/preprocessed_matrix_h5.h5",
    pca_h5          = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork0/join-u29f8cfd3fa/files/pca_h5.h5",
    random_seed     = null,
    perplexity      = null,
    input_pcs       = null,
    max_dims        = null,
    max_iter        = null,
    stop_lying_iter = null,
    mom_switch_iter = null,
    theta           = null,
)
