@include "rna/_cr_ana_stages.mro"

call RUN_DIFFERENTIAL_EXPRESSION_NG as RUN_DIFFERENTIAL_EXPRESSION(
    matrix_h5        = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u29f8cfd3e7/files/preprocessed_matrix_h5.h5",
    clustering_h5    = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-Aiptasia-sym_reprep1/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-u29f8cfd438/files/clustering_h5.h5",
    is_antibody_only = false,
)
