@include "rna/_cell_annotation_common_stages.mro"

call CELL_ANNOTATION_PREFLIGHT(
    is_cr_annotate              = false,
    is_multi                    = false,
    tenx_cloud_token_path       = null,
    cell_annotation_model       = null,
    reference_path              = "/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-GCA_001417965_1_Aiptasia_genome_1_1_genomic",
    cas_track_name              = null,
    skip_cell_annotation        = true,
    cr_annotate_filtered_matrix = null,
    cr_annotate_sample_cloupe   = null,
)
