[stdout]
Checking sample info...
Checking FASTQ folder...
Checking reference...
Checking reference_path (/oak/stanford/groups/akundaje/marinovg/various/2025-02-27-Tingting-scRNA-seq/cellranger-GCA_001417965_1_Aiptasia_genome_1_1_genomic) on sh02-02n29.int...
Checking system environment...
Checking optional arguments...
mro: v4.0.13
mrp: v4.0.13
python: Python 3.10.8
numpy: 1.26.4
scipy: 1.10.1
pysam: 0.21.0
h5py: 3.9.0
pandas: 2.1.4
STAR: 2.7.2a
samtools: samtools 1.16.1
