[stdout]
2025-03-12 09:24:07 [cr_ana::stages::graph_clustering] computing k-nearest neighbors with k = 179
2025-03-12 09:24:07 [scan_rs::nn] constructing ball tree of 2581 points
2025-03-12 09:24:07 [scan_rs::nn] querying points for 179 neighbors
2025-03-12 09:24:07 [cr_ana::stages::graph_clustering] running louvain
2025-03-12 09:24:07 [cr_ana::louvain] building network for neighbor matrix of shape: (2581,179)
2025-03-12 09:24:08 [cr_ana::louvain] louvain starting cpm score: -0.000407
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 0
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.597660
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 1
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.610995
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 2
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.612527
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 3
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.617887
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 4
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.633766
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 5
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.633965
2025-03-12 09:24:08 [cr_ana::louvain]   iteration 6
2025-03-12 09:24:08 [cr_ana::louvain]     cpm score: 0.633965
2025-03-12 09:24:08 [cr_ana::louvain] louvain optimized in 7 iterations
2025-03-12 09:24:08 [cr_ana::louvain] louvain final cpm score: 0.633965
optimization time: 61.63ms
2025-03-12 09:24:08 [cr_ana::stages::graph_clustering] merging clusters
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE params on 22898 x 686 matrix
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE on 404 vs 282 cells
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE params on 22898 x 565 matrix
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE on 345 vs 220 cells
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE params on 22898 x 648 matrix
2025-03-12 09:24:08 [scan_rs::merge_clusters] computing DE on 477 vs 171 cells
2025-03-12 09:24:09 [scan_rs::merge_clusters] computing DE params on 22898 x 330 matrix
2025-03-12 09:24:09 [scan_rs::merge_clusters] computing DE on 193 vs 137 cells
