python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.bam SAMstats-Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.bam SAMstats-Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.bam SAMstats-Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.bam SAMstats-Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.bam SAMstats-Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.bam SAMstats-Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.bam SAMstats-Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.bam SAMstats-Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.bam SAMstats-Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.bam SAMstats-Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.bam SAMstats-Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.bam SAMstats-Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.bam SAMstats-Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.bam SAMstats-Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.bam SAMstats-Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.bam SAMstats-Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.bam SAMstats-Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.bam SAMstats-Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.bam SAMstats-Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.bam SAMstats-Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.bam SAMstats-Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.bam SAMstats-Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.bam SAMstats-Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.bam SAMstats-Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.bam SAMstats-Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.bam SAMstats-Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.bam SAMstats-Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep1-ATAC-GSM7164788.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Heart-0day-rep2-ATAC-GSM7164789.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep1-ATAC-GSM7164790.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Kidney-0day-rep2-ATAC-GSM7164791.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep1-ATAC-GSM7164792.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Lung-0day-rep2-ATAC-GSM7164793.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep1-ATAC-GSM7164794.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Muscle-0day-rep2-ATAC-GSM7164795.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep1-ATAC-GSM7164796.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Spleen-0day-rep2-ATAC-GSM7164797.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep1-ATAC-GSM7164798.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-0day-rep2-ATAC-GSM7164799.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep1-ATAC-GSM7164800.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-28day-rep2-ATAC-GSM7164801.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep1-ATAC-GSM7164802.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Liver-180day-rep2-ATAC-GSM7164803.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &