python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM