python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.bam SAMstats-Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.bam SAMstats-ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.bam SAMstats-ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.bam SAMstats-ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.bam SAMstats-ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.bam SAMstats-ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.bam SAMstats-ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.bam SAMstats-ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.bam SAMstats-LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.bam SAMstats-LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.bam SAMstats-LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.bam SAMstats-LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.bam SAMstats-LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.bam SAMstats-MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.bam SAMstats-MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.bam SAMstats-MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.bam SAMstats-MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.bam SAMstats-Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.bam SAMstats-ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.bam SAMstats-LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.bam SAMstats-LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.bam SAMstats-LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.bam SAMstats-LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.bam SAMstats-LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.bam SAMstats-MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.bam SAMstats-MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.bam SAMstats-MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam SAMstats-MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.InsLen -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.wig -notitle -uniqueBAM -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Fat_ATAC-GSM4256374.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Fat_ATAC-GSM4256375.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Heart_ATAC-GSM4256376.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Heart_ATAC-GSM4256377.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Liver_ATAC-GSM4256378.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Liver_ATAC-GSM4256379.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Muscle_ATAC-GSM4256380.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_2_Muscle_ATAC-GSM4256381.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes Duroc_2W_1_Spleen_ATAC-GSM4256382.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Fat_ATAC-GSM4256383.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Fat_ATAC-GSM4256384.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Heart_ATAC-GSM4256385.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Liver_ATAC-GSM4256387.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Muscle_ATAC-GSM4256388.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_2_Muscle_ATAC-GSM4256389.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ES_2W_1_Spleen_ATAC-GSM4256390.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Fat_ATAC-GSM4256391.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Fat_ATAC-GSM4256392.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Liver_ATAC-GSM4256393.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_1_Muscle_ATAC-GSM4256395.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes LW_2W_2_Muscle_ATAC-GSM4256396.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_1_Fat_ATAC-GSM4256397.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Fat_ATAC-GSM4256398.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Liver_ATAC-GSM4256400.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.5p.counts.wig -notitle -uniqueBAM -shift 4 &