## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.bam] OUTPUT=MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.bam METRICS_FILE=MS_2W_2_Muscle_ATAC-GSM4256401.2x36mers.noMT.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Jul 09 18:58:54 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	58091138	0	0	20348574	0	0.350287	62147002

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.392689
3.0	1.546893
4.0	1.607448
5.0	1.631227
6.0	1.640565
7.0	1.644232
8.0	1.645671
9.0	1.646237
10.0	1.646459
11.0	1.646546
12.0	1.64658
13.0	1.646594
14.0	1.646599
15.0	1.646601
16.0	1.646602
17.0	1.646602
18.0	1.646602
19.0	1.646603
20.0	1.646603
21.0	1.646603
22.0	1.646603
23.0	1.646603
24.0	1.646603
25.0	1.646603
26.0	1.646603
27.0	1.646603
28.0	1.646603
29.0	1.646603
30.0	1.646603
31.0	1.646603
32.0	1.646603
33.0	1.646603
34.0	1.646603
35.0	1.646603
36.0	1.646603
37.0	1.646603
38.0	1.646603
39.0	1.646603
40.0	1.646603
41.0	1.646603
42.0	1.646603
43.0	1.646603
44.0	1.646603
45.0	1.646603
46.0	1.646603
47.0	1.646603
48.0	1.646603
49.0	1.646603
50.0	1.646603
51.0	1.646603
52.0	1.646603
53.0	1.646603
54.0	1.646603
55.0	1.646603
56.0	1.646603
57.0	1.646603
58.0	1.646603
59.0	1.646603
60.0	1.646603
61.0	1.646603
62.0	1.646603
63.0	1.646603
64.0	1.646603
65.0	1.646603
66.0	1.646603
67.0	1.646603
68.0	1.646603
69.0	1.646603
70.0	1.646603
71.0	1.646603
72.0	1.646603
73.0	1.646603
74.0	1.646603
75.0	1.646603
76.0	1.646603
77.0	1.646603
78.0	1.646603
79.0	1.646603
80.0	1.646603
81.0	1.646603
82.0	1.646603
83.0	1.646603
84.0	1.646603
85.0	1.646603
86.0	1.646603
87.0	1.646603
88.0	1.646603
89.0	1.646603
90.0	1.646603
91.0	1.646603
92.0	1.646603
93.0	1.646603
94.0	1.646603
95.0	1.646603
96.0	1.646603
97.0	1.646603
98.0	1.646603
99.0	1.646603
100.0	1.646603