python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P348-GSM4799608.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P348-GSM4799608.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P348-GSM4799608.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P350-GSM4799609.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P350-GSM4799609.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_adipose_rep_P350-GSM4799609.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P348-GSM4799611.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P348-GSM4799611.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P348-GSM4799611.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P350-GSM4799612.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P350-GSM4799612.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_cerebellum_rep_P350-GSM4799612.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P348-GSM4799615.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P348-GSM4799615.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P348-GSM4799615.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P350-GSM4799616.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P350-GSM4799616.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_cerebral_cortex_rep_P350-GSM4799616.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P348-GSM4799619.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P348-GSM4799619.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P348-GSM4799619.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P350-GSM4799620.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P350-GSM4799620.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_hypothalamus_rep_P350-GSM4799620.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P348-GSM4799623.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P348-GSM4799623.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P348-GSM4799623.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P350-GSM4799624.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P350-GSM4799624.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_liver_rep_P350-GSM4799624.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P348-GSM4799627.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P348-GSM4799627.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P348-GSM4799627.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P350-GSM4799628.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P350-GSM4799628.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_lung_rep_P350-GSM4799628.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P348-GSM4799631.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P348-GSM4799631.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P348-GSM4799631.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P350-GSM4799632.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P350-GSM4799632.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_skeletal_muscle_rep_P350-GSM4799632.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P348-GSM4799635.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P348-GSM4799635.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P348-GSM4799635.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P350-GSM4799636.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak 0 ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P350-GSM4799636.2x36mers.noMT.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Sus_scrofa-Sscrofa11.1/Sus_scrofa.Sscrofa11.1.dna.toplevel.chrom.sizes ATAC-seq_from_UC_Davis_FAANG_pig_spleen_rep_P350-GSM4799636.2x36mers.noMT.unique.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -uniqueBAM