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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_L_Li3-CRR995092.2x36mers.noMT.bwa.unique.dedup.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Br2-CRR995095.2x36mers.noMT.bwa.unique.dedup.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Mu3-CRR995102.2x36mers.noMT.bwa.unique.dedup.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Li3-CRR995111.2x36mers.noMT.bwa.unique.dedup.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Mu1-CRR995112.2x36mers.noMT.bwa.unique.dedup.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Mu2-CRR995113.2x36mers.noMT.bwa.unique.dedup.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Li3-CRR995017.2x36mers.noMT.bwa.unique.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Mu2-CRR995019.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Mu3-CRR995020.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Pl1-CRR995021.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Pl2-CRR995022.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS40_Pl3-CRR995023.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Br1-CRR995024.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Br2-CRR995025.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Br3-CRR995026.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Li1-CRR995027.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Li2-CRR995028.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Li3-CRR995029.2x36mers.noMT.bwa.unique.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Pl1-CRR995033.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index DS70_Pl3-CRR995034.2x36mers.noMT.bwa.unique.bam
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/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Li2-CRR995069.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Li3-CRR995070.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Mu1-CRR995071.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Mu2-CRR995072.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Mu3-CRR995073.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Pl1-CRR995074.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Pl2-CRR995075.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LB70_Pl3-CRR995076.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Br1-CRR995077.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Br2-CRR995078.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Br3-CRR995079.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Li1-CRR995080.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Li2-CRR995081.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Li3-CRR995082.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Mu1-CRR995083.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Mu2-CRR995084.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS115_Mu3-CRR995085.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_B_Li1-CRR995087.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_B_Mu1-CRR995088.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_C_Br2-CRR995089.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_C_Li2-CRR995090.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_C_Mu2-CRR995091.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS168_L_Li3-CRR995092.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Br2-CRR995095.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Br3-CRR995096.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Li1-CRR995097.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Li2-CRR995098.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Li3-CRR995099.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Mu1-CRR995100.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Mu2-CRR995101.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Mu3-CRR995102.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Pl1-CRR995103.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Pl2-CRR995104.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS40_Pl3-CRR995105.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Br1-CRR995106.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Br2-CRR995107.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Br3-CRR995108.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Li1-CRR995109.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Li2-CRR995110.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Li3-CRR995111.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Mu1-CRR995112.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Mu2-CRR995113.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Mu3-CRR995114.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Pl2-CRR995115.2x36mers.noMT.bwa.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index LS70_Pl3-CRR995116.2x36mers.noMT.bwa.unique.bam