## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Pl3-CRR995116.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Pl3-CRR995116.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Pl3-CRR995116.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20599734	0	0	4328618	2553121	0.21013	85595514

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.125207
2.0	2.009739
3.0	2.705074
4.0	3.251682
5.0	3.681373
6.0	4.019156
7.0	4.28469
8.0	4.493427
9.0	4.657516
10.0	4.786508
11.0	4.887909
12.0	4.967622
13.0	5.030284
14.0	5.079543
15.0	5.118266
16.0	5.148706
17.0	5.172635
18.0	5.191446
19.0	5.206234
20.0	5.217858
21.0	5.226996
22.0	5.23418
23.0	5.239827
24.0	5.244266
25.0	5.247755
26.0	5.250499
27.0	5.252655
28.0	5.25435
29.0	5.255683
30.0	5.25673
31.0	5.257554
32.0	5.258201
33.0	5.25871
34.0	5.25911
35.0	5.259425
36.0	5.259672
37.0	5.259866
38.0	5.260019
39.0	5.260139
40.0	5.260233
41.0	5.260308
42.0	5.260366
43.0	5.260412
44.0	5.260448
45.0	5.260476
46.0	5.260499
47.0	5.260516
48.0	5.26053
49.0	5.260541
50.0	5.260549
51.0	5.260556
52.0	5.260561
53.0	5.260565
54.0	5.260568
55.0	5.260571
56.0	5.260573
57.0	5.260575
58.0	5.260576
59.0	5.260577
60.0	5.260578
61.0	5.260578
62.0	5.260579
63.0	5.260579
64.0	5.260579
65.0	5.26058
66.0	5.26058
67.0	5.26058
68.0	5.26058
69.0	5.26058
70.0	5.26058
71.0	5.26058
72.0	5.26058
73.0	5.26058
74.0	5.26058
75.0	5.26058
76.0	5.26058
77.0	5.26058
78.0	5.26058
79.0	5.26058
80.0	5.26058
81.0	5.26058
82.0	5.26058
83.0	5.26058
84.0	5.26058
85.0	5.26058
86.0	5.26058
87.0	5.26058
88.0	5.26058
89.0	5.26058
90.0	5.26058
91.0	5.26058
92.0	5.26058
93.0	5.26058
94.0	5.26058
95.0	5.26058
96.0	5.26058
97.0	5.26058
98.0	5.26058
99.0	5.26058
100.0	5.26058