## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Pl2-CRR995115.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Pl2-CRR995115.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Pl2-CRR995115.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17362732	0	0	3821439	2754684	0.220094	95089613

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.171956
2.0	2.148321
3.0	2.961737
4.0	3.6394
5.0	4.203966
6.0	4.674309
7.0	5.066155
8.0	5.392605
9.0	5.664572
10.0	5.891151
11.0	6.079914
12.0	6.237175
13.0	6.368189
14.0	6.477339
15.0	6.568271
16.0	6.644028
17.0	6.707142
18.0	6.759722
19.0	6.803527
20.0	6.840022
21.0	6.870425
22.0	6.895755
23.0	6.916857
24.0	6.934437
25.0	6.949084
26.0	6.961286
27.0	6.971451
28.0	6.97992
29.0	6.986976
30.0	6.992854
31.0	6.997751
32.0	7.00183
33.0	7.005229
34.0	7.008061
35.0	7.01042
36.0	7.012385
37.0	7.014023
38.0	7.015387
39.0	7.016523
40.0	7.01747
41.0	7.018259
42.0	7.018916
43.0	7.019463
44.0	7.019919
45.0	7.020299
46.0	7.020616
47.0	7.02088
48.0	7.021099
49.0	7.021282
50.0	7.021435
51.0	7.021562
52.0	7.021668
53.0	7.021756
54.0	7.021829
55.0	7.02189
56.0	7.021941
57.0	7.021984
58.0	7.022019
59.0	7.022049
60.0	7.022073
61.0	7.022094
62.0	7.022111
63.0	7.022125
64.0	7.022137
65.0	7.022147
66.0	7.022155
67.0	7.022162
68.0	7.022168
69.0	7.022172
70.0	7.022176
71.0	7.02218
72.0	7.022182
73.0	7.022185
74.0	7.022186
75.0	7.022188
76.0	7.022189
77.0	7.02219
78.0	7.022191
79.0	7.022192
80.0	7.022193
81.0	7.022193
82.0	7.022194
83.0	7.022194
84.0	7.022194
85.0	7.022195
86.0	7.022195
87.0	7.022195
88.0	7.022195
89.0	7.022195
90.0	7.022195
91.0	7.022196
92.0	7.022196
93.0	7.022196
94.0	7.022196
95.0	7.022196
96.0	7.022196
97.0	7.022196
98.0	7.022196
99.0	7.022196
100.0	7.022196