## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Mu3-CRR995114.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Mu3-CRR995114.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Mu3-CRR995114.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:50 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	21091790	0	0	4290572	2561307	0.203424	93006610

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.123204
2.0	2.018509
3.0	2.732154
4.0	3.301
5.0	3.754426
6.0	4.115851
7.0	4.403942
8.0	4.633579
9.0	4.816622
10.0	4.962526
11.0	5.078825
12.0	5.171527
13.0	5.24542
14.0	5.304319
15.0	5.351268
16.0	5.388691
17.0	5.418521
18.0	5.442298
19.0	5.461251
20.0	5.476358
21.0	5.4884
22.0	5.497998
23.0	5.505649
24.0	5.511748
25.0	5.516609
26.0	5.520484
27.0	5.523573
28.0	5.526035
29.0	5.527997
30.0	5.529561
31.0	5.530808
32.0	5.531802
33.0	5.532594
34.0	5.533226
35.0	5.533729
36.0	5.53413
37.0	5.53445
38.0	5.534705
39.0	5.534908
40.0	5.53507
41.0	5.535199
42.0	5.535302
43.0	5.535384
44.0	5.53545
45.0	5.535502
46.0	5.535543
47.0	5.535576
48.0	5.535603
49.0	5.535624
50.0	5.535641
51.0	5.535654
52.0	5.535665
53.0	5.535673
54.0	5.53568
55.0	5.535685
56.0	5.53569
57.0	5.535693
58.0	5.535696
59.0	5.535698
60.0	5.5357
61.0	5.535701
62.0	5.535702
63.0	5.535703
64.0	5.535704
65.0	5.535704
66.0	5.535705
67.0	5.535705
68.0	5.535705
69.0	5.535706
70.0	5.535706
71.0	5.535706
72.0	5.535706
73.0	5.535706
74.0	5.535706
75.0	5.535706
76.0	5.535706
77.0	5.535706
78.0	5.535706
79.0	5.535706
80.0	5.535706
81.0	5.535706
82.0	5.535706
83.0	5.535706
84.0	5.535706
85.0	5.535706
86.0	5.535706
87.0	5.535706
88.0	5.535706
89.0	5.535706
90.0	5.535706
91.0	5.535706
92.0	5.535706
93.0	5.535706
94.0	5.535706
95.0	5.535706
96.0	5.535706
97.0	5.535706
98.0	5.535706
99.0	5.535706
100.0	5.535706