## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Mu1-CRR995112.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Mu1-CRR995112.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Mu1-CRR995112.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:15 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18028485	0	0	4459584	2425653	0.247363	54524209

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.131335
2.0	1.944149
3.0	2.52812
4.0	2.947678
5.0	3.249111
6.0	3.465678
7.0	3.621272
8.0	3.733059
9.0	3.813373
10.0	3.871075
11.0	3.912531
12.0	3.942316
13.0	3.963715
14.0	3.979089
15.0	3.990135
16.0	3.998071
17.0	4.003772
18.0	4.007869
19.0	4.010812
20.0	4.012926
21.0	4.014445
22.0	4.015537
23.0	4.016321
24.0	4.016884
25.0	4.017289
26.0	4.01758
27.0	4.017789
28.0	4.017939
29.0	4.018046
30.0	4.018124
31.0	4.01818
32.0	4.01822
33.0	4.018248
34.0	4.018269
35.0	4.018284
36.0	4.018294
37.0	4.018302
38.0	4.018308
39.0	4.018312
40.0	4.018314
41.0	4.018316
42.0	4.018318
43.0	4.018319
44.0	4.01832
45.0	4.01832
46.0	4.018321
47.0	4.018321
48.0	4.018321
49.0	4.018321
50.0	4.018321
51.0	4.018321
52.0	4.018322
53.0	4.018322
54.0	4.018322
55.0	4.018322
56.0	4.018322
57.0	4.018322
58.0	4.018322
59.0	4.018322
60.0	4.018322
61.0	4.018322
62.0	4.018322
63.0	4.018322
64.0	4.018322
65.0	4.018322
66.0	4.018322
67.0	4.018322
68.0	4.018322
69.0	4.018322
70.0	4.018322
71.0	4.018322
72.0	4.018322
73.0	4.018322
74.0	4.018322
75.0	4.018322
76.0	4.018322
77.0	4.018322
78.0	4.018322
79.0	4.018322
80.0	4.018322
81.0	4.018322
82.0	4.018322
83.0	4.018322
84.0	4.018322
85.0	4.018322
86.0	4.018322
87.0	4.018322
88.0	4.018322
89.0	4.018322
90.0	4.018322
91.0	4.018322
92.0	4.018322
93.0	4.018322
94.0	4.018322
95.0	4.018322
96.0	4.018322
97.0	4.018322
98.0	4.018322
99.0	4.018322
100.0	4.018322