## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[LS70_Li2-CRR995110.2x36mers.noMT.bwa.unique.bam] OUTPUT=LS70_Li2-CRR995110.2x36mers.noMT.bwa.unique.dedup.bam METRICS_FILE=LS70_Li2-CRR995110.2x36mers.noMT.bwa.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 13 16:18:49 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	20593205	0	0	5232291	3374699	0.254079	73952313

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.170149
2.0	2.055886
3.0	2.726339
4.0	3.233835
5.0	3.61798
6.0	3.908757
7.0	4.128859
8.0	4.295464
9.0	4.421574
10.0	4.517033
11.0	4.58929
12.0	4.643984
13.0	4.685384
14.0	4.716722
15.0	4.740443
16.0	4.758399
17.0	4.77199
18.0	4.782278
19.0	4.790065
20.0	4.79596
21.0	4.800422
22.0	4.803799
23.0	4.806356
24.0	4.808291
25.0	4.809756
26.0	4.810864
27.0	4.811704
28.0	4.812339
29.0	4.81282
30.0	4.813184
31.0	4.813459
32.0	4.813668
33.0	4.813826
34.0	4.813945
35.0	4.814036
36.0	4.814104
37.0	4.814156
38.0	4.814195
39.0	4.814225
40.0	4.814247
41.0	4.814264
42.0	4.814277
43.0	4.814287
44.0	4.814294
45.0	4.8143
46.0	4.814304
47.0	4.814307
48.0	4.81431
49.0	4.814312
50.0	4.814313
51.0	4.814314
52.0	4.814315
53.0	4.814315
54.0	4.814316
55.0	4.814316
56.0	4.814316
57.0	4.814317
58.0	4.814317
59.0	4.814317
60.0	4.814317
61.0	4.814317
62.0	4.814317
63.0	4.814317
64.0	4.814317
65.0	4.814317
66.0	4.814317
67.0	4.814317
68.0	4.814317
69.0	4.814317
70.0	4.814317
71.0	4.814317
72.0	4.814317
73.0	4.814317
74.0	4.814317
75.0	4.814317
76.0	4.814317
77.0	4.814317
78.0	4.814317
79.0	4.814317
80.0	4.814317
81.0	4.814317
82.0	4.814317
83.0	4.814317
84.0	4.814317
85.0	4.814317
86.0	4.814317
87.0	4.814317
88.0	4.814317
89.0	4.814317
90.0	4.814317
91.0	4.814317
92.0	4.814317
93.0	4.814317
94.0	4.814317
95.0	4.814317
96.0	4.814317
97.0	4.814317
98.0	4.814317
99.0	4.814317
100.0	4.814317